Query psy15183
Match_columns 1973
No_of_seqs 1149 out of 4443
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 22:40:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0681|consensus 100.0 1.2E-89 2.6E-94 811.6 43.3 615 845-1484 3-644 (645)
2 KOG2206|consensus 100.0 2.1E-79 4.6E-84 730.5 28.4 543 91-711 3-554 (687)
3 PTZ00452 actin; Provisional 100.0 7.4E-68 1.6E-72 650.9 35.0 368 867-1480 4-375 (375)
4 PTZ00466 actin-like protein; P 100.0 1.7E-67 3.7E-72 648.3 34.1 366 868-1480 12-380 (380)
5 KOG0676|consensus 100.0 3.8E-67 8.2E-72 625.3 27.7 366 864-1480 3-372 (372)
6 PTZ00281 actin; Provisional 100.0 4.3E-66 9.4E-71 636.6 32.8 368 867-1480 5-376 (376)
7 PTZ00004 actin-2; Provisional 100.0 1.6E-64 3.5E-69 623.3 34.9 370 866-1480 4-378 (378)
8 PTZ00280 Actin-related protein 100.0 5E-62 1.1E-66 608.2 35.0 373 868-1480 4-410 (414)
9 KOG0679|consensus 100.0 9.3E-61 2E-65 551.2 29.7 396 864-1479 7-425 (426)
10 KOG0677|consensus 100.0 5.2E-61 1.1E-65 524.9 21.4 364 867-1476 3-384 (389)
11 PF00022 Actin: Actin; InterP 100.0 5.8E-60 1.3E-64 586.5 27.3 366 866-1480 2-393 (393)
12 smart00268 ACTIN Actin. ACTIN 100.0 3.2E-58 6.9E-63 567.4 34.0 369 869-1480 2-373 (373)
13 KOG0680|consensus 100.0 9.4E-59 2E-63 522.1 24.9 386 868-1479 3-398 (400)
14 cd00012 ACTIN Actin; An ubiqui 100.0 1.5E-56 3.2E-61 552.2 33.7 365 870-1478 1-371 (371)
15 KOG2206|consensus 100.0 5.2E-58 1.1E-62 547.6 16.0 391 1536-1973 3-396 (687)
16 COG5277 Actin and related prot 100.0 2.2E-55 4.8E-60 542.7 31.7 383 868-1479 6-443 (444)
17 PRK10829 ribonuclease D; Provi 100.0 1E-47 2.3E-52 466.1 33.3 286 320-614 2-288 (373)
18 COG0349 Rnd Ribonuclease D [Tr 100.0 3.5E-44 7.7E-49 422.2 28.1 283 324-614 1-284 (361)
19 KOG0678|consensus 100.0 2.7E-44 5.9E-49 405.7 17.1 370 870-1478 6-408 (415)
20 TIGR01388 rnd ribonuclease D. 100.0 1.3E-42 2.9E-47 424.4 31.7 283 323-614 1-284 (367)
21 KOG0797|consensus 100.0 3.9E-33 8.4E-38 330.1 20.8 215 866-1085 31-352 (618)
22 KOG3463|consensus 100.0 1.2E-29 2.5E-34 245.3 6.4 75 1-76 1-76 (109)
23 PRK13930 rod shape-determining 100.0 1.9E-27 4.2E-32 289.8 21.1 205 870-1087 10-221 (335)
24 PRK10829 ribonuclease D; Provi 99.9 4E-27 8.7E-32 286.7 22.3 189 1765-1959 2-191 (373)
25 cd06129 RNaseD_like DEDDy 3'-5 99.9 6.5E-27 1.4E-31 256.5 16.2 157 330-486 2-161 (161)
26 PRK13927 rod shape-determining 99.9 2.7E-26 5.8E-31 279.9 21.8 200 870-1085 7-215 (334)
27 cd06146 mut-7_like_exo DEDDy 3 99.9 4.6E-26 9.9E-31 256.8 17.6 165 321-485 1-192 (193)
28 COG0349 Rnd Ribonuclease D [Tr 99.9 5.8E-26 1.3E-30 268.7 18.9 181 1769-1951 1-182 (361)
29 cd06129 RNaseD_like DEDDy 3'-5 99.9 4E-25 8.7E-30 242.4 18.8 157 1775-1931 2-161 (161)
30 TIGR00904 mreB cell shape dete 99.9 2.5E-24 5.4E-29 262.5 22.8 206 871-1086 5-218 (333)
31 cd06146 mut-7_like_exo DEDDy 3 99.9 1.9E-24 4E-29 243.7 18.8 165 1766-1930 1-192 (193)
32 cd06148 Egl_like_exo DEDDy 3'- 99.9 1E-24 2.2E-29 246.7 14.8 159 333-492 3-181 (197)
33 cd06141 WRN_exo DEDDy 3'-5' ex 99.9 3.2E-24 7E-29 236.9 17.3 162 324-485 1-169 (170)
34 PRK13929 rod-share determining 99.9 4.8E-24 1E-28 260.0 19.6 202 870-1086 6-218 (335)
35 COG5123 TOA2 Transcription ini 99.9 4.1E-25 8.9E-30 210.3 5.3 79 2-81 4-84 (113)
36 TIGR01388 rnd ribonuclease D. 99.9 3.7E-23 8E-28 253.8 22.3 185 1768-1958 1-186 (367)
37 PF01612 DNA_pol_A_exo1: 3'-5' 99.9 3.2E-23 6.9E-28 228.6 17.0 169 321-489 1-176 (176)
38 cd06141 WRN_exo DEDDy 3'-5' ex 99.9 9.9E-23 2.1E-27 225.1 18.4 161 1770-1930 2-169 (170)
39 cd06148 Egl_like_exo DEDDy 3'- 99.9 8.4E-23 1.8E-27 231.1 15.4 158 1778-1936 3-180 (197)
40 PF01612 DNA_pol_A_exo1: 3'-5' 99.9 4.6E-22 1E-26 219.3 17.9 169 1766-1934 1-176 (176)
41 PRK13928 rod shape-determining 99.9 5.9E-21 1.3E-25 233.3 18.3 201 871-1084 6-213 (336)
42 PF06723 MreB_Mbl: MreB/Mbl pr 99.8 7.1E-20 1.5E-24 220.0 21.1 204 870-1085 3-212 (326)
43 KOG3463|consensus 99.8 3.8E-22 8.2E-27 193.6 0.9 84 1454-1538 21-106 (109)
44 PF02751 TFIIA_gamma_C: Transc 99.8 6.9E-21 1.5E-25 165.5 3.9 50 1484-1534 1-52 (52)
45 PF02268 TFIIA_gamma_N: Transc 99.8 6E-20 1.3E-24 157.8 5.9 49 1-49 1-49 (49)
46 cd06142 RNaseD_exo DEDDy 3'-5' 99.7 3.5E-17 7.7E-22 181.5 19.4 162 330-492 2-164 (178)
47 cd06147 Rrp6p_like_exo DEDDy 3 99.7 8.5E-17 1.8E-21 181.6 20.0 187 318-504 2-189 (192)
48 cd06142 RNaseD_exo DEDDy 3'-5' 99.7 2.1E-16 4.6E-21 175.3 21.6 171 1775-1948 2-173 (178)
49 cd06147 Rrp6p_like_exo DEDDy 3 99.7 3.1E-16 6.7E-21 177.1 22.0 188 1763-1950 2-190 (192)
50 smart00474 35EXOc 3'-5' exonuc 99.7 6.1E-16 1.3E-20 169.5 18.3 166 322-488 2-171 (172)
51 smart00474 35EXOc 3'-5' exonuc 99.7 2.7E-15 5.9E-20 164.4 20.5 166 1767-1933 2-171 (172)
52 PF08066 PMC2NT: PMC2NT (NUC01 99.6 2.3E-16 5E-21 156.8 3.1 85 1550-1635 1-90 (91)
53 COG1077 MreB Actin-like ATPase 99.6 7.6E-14 1.7E-18 162.4 22.4 209 869-1086 7-221 (342)
54 PRK05755 DNA polymerase I; Pro 99.6 4.5E-14 9.8E-19 191.9 23.0 183 319-508 294-484 (880)
55 PF08066 PMC2NT: PMC2NT (NUC01 99.6 7.4E-16 1.6E-20 153.2 1.3 83 105-191 1-91 (91)
56 cd06140 DNA_polA_I_Bacillus_li 99.5 1.2E-13 2.7E-18 153.7 16.5 162 340-508 3-170 (178)
57 cd09018 DEDDy_polA_RNaseD_like 99.5 1.4E-13 3E-18 148.4 13.7 143 342-485 1-149 (150)
58 cd00007 35EXOc 3'-5' exonuclea 99.5 1.8E-13 3.9E-18 147.3 14.4 146 342-487 2-154 (155)
59 PRK14975 bifunctional 3'-5' ex 99.5 2.7E-13 5.8E-18 175.7 18.6 142 320-491 2-147 (553)
60 COG5123 TOA2 Transcription ini 99.5 4.4E-15 9.6E-20 142.4 1.6 84 1453-1537 21-112 (113)
61 cd06140 DNA_polA_I_Bacillus_li 99.5 7.5E-13 1.6E-17 147.4 18.1 160 1785-1947 3-168 (178)
62 cd00007 35EXOc 3'-5' exonuclea 99.5 6.9E-13 1.5E-17 142.8 16.2 146 1787-1932 2-154 (155)
63 cd09018 DEDDy_polA_RNaseD_like 99.5 6.5E-13 1.4E-17 143.1 15.2 143 1787-1930 1-149 (150)
64 PRK05755 DNA polymerase I; Pro 99.4 2.2E-12 4.8E-17 175.6 22.4 180 1764-1946 294-481 (880)
65 cd06139 DNA_polA_I_Ecoli_like_ 99.3 1.4E-11 3.1E-16 138.5 16.9 163 338-508 3-185 (193)
66 cd06139 DNA_polA_I_Ecoli_like_ 99.3 4.7E-11 1E-15 134.3 18.3 161 1783-1947 3-183 (193)
67 TIGR02529 EutJ ethanolamine ut 99.3 2.4E-10 5.2E-15 133.7 22.2 120 929-1058 28-151 (239)
68 KOG2207|consensus 99.2 7.7E-12 1.7E-16 154.5 7.7 176 314-489 385-586 (617)
69 PRK14975 bifunctional 3'-5' ex 99.2 3.5E-11 7.5E-16 156.2 14.0 142 1765-1936 2-147 (553)
70 PRK15080 ethanolamine utilizat 99.1 3E-09 6.4E-14 126.6 22.7 151 868-1058 24-178 (267)
71 PF00570 HRDC: HRDC domain Blo 99.1 7.2E-11 1.6E-15 111.2 6.3 68 538-605 1-68 (68)
72 KOG2207|consensus 99.1 1.2E-10 2.6E-15 144.1 9.9 175 1760-1934 386-586 (617)
73 smart00341 HRDC Helicase and R 99.1 2.1E-10 4.6E-15 111.7 9.3 78 536-613 2-79 (81)
74 COG0749 PolA DNA polymerase I 99.1 8.7E-10 1.9E-14 139.6 14.9 181 321-507 3-194 (593)
75 COG0749 PolA DNA polymerase I 99.1 1.5E-09 3.1E-14 137.6 16.4 168 1768-1936 5-183 (593)
76 TIGR00593 pola DNA polymerase 99.0 9.2E-09 2E-13 138.9 21.9 174 1766-1947 304-489 (887)
77 TIGR00593 pola DNA polymerase 99.0 8.4E-09 1.8E-13 139.2 18.9 176 321-508 304-491 (887)
78 CHL00094 dnaK heat shock prote 98.7 2.9E-07 6.2E-12 122.0 20.5 186 869-1061 3-238 (621)
79 PTZ00400 DnaK-type molecular c 98.7 2.9E-07 6.3E-12 122.5 20.4 97 964-1061 175-277 (663)
80 TIGR02350 prok_dnaK chaperone 98.6 4.7E-07 1E-11 119.6 18.6 180 870-1061 2-234 (595)
81 PLN03184 chloroplast Hsp70; Pr 98.6 1.3E-06 2.8E-11 116.4 22.2 181 869-1061 40-275 (673)
82 cd06128 DNA_polA_exo DEDDy 3'- 98.6 7.3E-07 1.6E-11 97.0 15.7 139 1790-1930 6-150 (151)
83 TIGR01991 HscA Fe-S protein as 98.6 1.1E-06 2.5E-11 115.8 20.0 179 871-1061 2-232 (599)
84 PTZ00009 heat shock 70 kDa pro 98.6 1.2E-06 2.6E-11 116.6 20.3 97 964-1061 141-245 (653)
85 PRK00290 dnaK molecular chaper 98.6 1.4E-06 3E-11 115.8 20.8 180 870-1061 4-236 (627)
86 PRK01433 hscA chaperone protei 98.6 1.5E-06 3.2E-11 114.3 19.8 116 940-1061 119-244 (595)
87 PTZ00186 heat shock 70 kDa pre 98.6 1.1E-06 2.3E-11 116.6 18.3 97 964-1061 161-263 (657)
88 PRK13411 molecular chaperone D 98.5 2.4E-06 5.3E-11 113.7 21.1 181 869-1061 3-237 (653)
89 PRK05183 hscA chaperone protei 98.5 7.2E-06 1.6E-10 108.6 25.3 180 869-1061 20-252 (616)
90 TIGR01174 ftsA cell division p 98.5 5.1E-06 1.1E-10 103.8 22.4 99 975-1085 156-257 (371)
91 PRK13410 molecular chaperone D 98.5 1E-06 2.2E-11 117.2 16.8 181 869-1061 3-238 (668)
92 PF02751 TFIIA_gamma_C: Transc 98.5 2.4E-08 5.3E-13 87.9 -0.2 25 51-76 1-25 (52)
93 cd06128 DNA_polA_exo DEDDy 3'- 98.5 1.7E-06 3.7E-11 94.2 14.1 128 356-485 17-150 (151)
94 PRK09472 ftsA cell division pr 98.4 2.7E-05 5.9E-10 98.9 25.4 98 975-1084 164-264 (420)
95 PRK11678 putative chaperone; P 98.4 1.5E-05 3.3E-10 101.5 21.9 178 871-1055 3-260 (450)
96 PF00012 HSP70: Hsp70 protein; 98.3 2E-05 4.3E-10 104.6 21.7 115 941-1061 114-239 (602)
97 COG0849 ftsA Cell division ATP 98.0 0.0004 8.7E-09 87.1 23.0 98 976-1085 164-264 (418)
98 TIGR01175 pilM type IV pilus a 97.9 0.0011 2.4E-08 82.2 24.0 96 974-1081 140-245 (348)
99 TIGR01389 recQ ATP-dependent D 97.7 5.2E-05 1.1E-09 100.5 8.1 70 538-607 521-590 (591)
100 PF11104 PilM_2: Type IV pilus 97.7 0.0023 4.9E-08 79.4 20.5 89 964-1058 126-223 (340)
101 KOG4373|consensus 97.6 0.00021 4.5E-09 84.9 9.1 126 1801-1926 146-281 (319)
102 cd06125 DnaQ_like_exo DnaQ-lik 97.5 0.00048 1E-08 69.8 9.2 73 343-425 1-83 (96)
103 KOG4373|consensus 97.5 0.00023 5E-09 84.6 7.8 127 355-481 145-281 (319)
104 TIGR03739 PRTRC_D PRTRC system 97.1 0.0028 6.1E-08 78.0 11.5 183 873-1062 2-216 (320)
105 COG0443 DnaK Molecular chapero 97.0 0.01 2.2E-07 78.4 16.2 187 868-1061 5-223 (579)
106 cd06125 DnaQ_like_exo DnaQ-lik 96.8 0.0051 1.1E-07 62.4 8.7 73 1788-1870 1-83 (96)
107 PRK10719 eutA reactivating fac 96.3 0.016 3.4E-07 73.2 10.5 169 868-1052 6-183 (475)
108 PRK08517 DNA polymerase III su 96.3 0.1 2.2E-06 62.4 16.4 156 1782-1962 65-256 (257)
109 KOG0104|consensus 96.2 0.62 1.3E-05 61.2 23.6 189 867-1061 21-276 (902)
110 PRK13917 plasmid segregation p 96.2 0.094 2E-06 65.4 16.4 198 869-1078 3-248 (344)
111 PRK06310 DNA polymerase III su 96.1 0.064 1.4E-06 63.9 13.8 132 337-488 4-174 (250)
112 cd06144 REX4_like DEDDh 3'-5' 96.1 0.018 3.8E-07 63.4 8.4 81 1828-1927 69-152 (152)
113 PRK11057 ATP-dependent DNA hel 96.0 0.014 3.1E-07 77.8 8.2 74 537-610 531-604 (607)
114 PRK06310 DNA polymerase III su 95.9 0.1 2.2E-06 62.2 14.3 132 1782-1933 4-174 (250)
115 cd06144 REX4_like DEDDh 3'-5' 95.8 0.047 1E-06 60.0 10.1 80 383-481 69-151 (152)
116 PRK06063 DNA polymerase III su 95.7 0.11 2.4E-06 63.9 14.0 134 340-492 15-183 (313)
117 PRK06807 DNA polymerase III su 95.7 0.11 2.4E-06 63.8 13.6 129 341-491 9-175 (313)
118 cd06137 DEDDh_RNase DEDDh 3'-5 95.6 0.097 2.1E-06 58.2 11.8 79 1830-1926 77-160 (161)
119 PRK08517 DNA polymerase III su 95.6 0.23 4.9E-06 59.5 15.5 133 337-490 65-233 (257)
120 PRK07740 hypothetical protein; 95.6 0.18 3.8E-06 60.0 14.6 91 384-493 134-231 (244)
121 cd06149 ISG20 DEDDh 3'-5' exon 95.5 0.081 1.8E-06 58.6 10.7 82 383-481 69-156 (157)
122 PRK07942 DNA polymerase III su 95.5 0.19 4.1E-06 59.3 14.3 136 339-492 5-184 (232)
123 PRK07942 DNA polymerase III su 95.4 0.33 7.1E-06 57.3 15.8 79 1839-1934 94-181 (232)
124 TIGR01298 RNaseT ribonuclease 95.4 0.22 4.9E-06 57.4 14.0 84 394-493 106-197 (200)
125 cd06137 DEDDh_RNase DEDDh 3'-5 95.3 0.15 3.2E-06 56.7 12.0 80 384-481 76-160 (161)
126 cd06145 REX1_like DEDDh 3'-5' 95.3 0.12 2.6E-06 56.8 11.0 80 1829-1926 68-149 (150)
127 PRK06807 DNA polymerase III su 95.3 0.34 7.3E-06 59.7 15.7 87 1828-1934 80-173 (313)
128 cd06149 ISG20 DEDDh 3'-5' exon 95.1 0.12 2.6E-06 57.3 10.3 83 1828-1927 69-157 (157)
129 PF06406 StbA: StbA protein; 95.1 0.13 2.9E-06 63.4 11.8 180 870-1060 2-212 (318)
130 cd06145 REX1_like DEDDh 3'-5' 95.1 0.18 3.9E-06 55.4 11.6 80 384-481 68-149 (150)
131 PRK06063 DNA polymerase III su 95.0 0.34 7.3E-06 59.7 15.0 90 1828-1936 86-182 (313)
132 PLN03137 ATP-dependent DNA hel 94.9 0.047 1E-06 75.4 7.8 72 539-610 1029-1102(1195)
133 PRK07740 hypothetical protein; 94.9 0.56 1.2E-05 55.8 15.9 89 1829-1936 134-229 (244)
134 cd06143 PAN2_exo DEDDh 3'-5' e 94.9 0.17 3.7E-06 56.8 10.8 77 385-481 95-173 (174)
135 TIGR01405 polC_Gram_pos DNA po 94.9 0.17 3.8E-06 71.6 13.4 133 1783-1936 188-358 (1213)
136 KOG2249|consensus 94.8 0.2 4.3E-06 58.7 11.2 131 1786-1936 106-269 (280)
137 TIGR01405 polC_Gram_pos DNA po 94.8 0.24 5.1E-06 70.3 14.0 135 338-493 188-360 (1213)
138 PRK07883 hypothetical protein; 94.7 0.22 4.7E-06 65.9 13.0 136 336-492 11-186 (557)
139 TIGR00573 dnaq exonuclease, DN 94.6 0.23 5.1E-06 57.9 11.4 135 337-491 4-180 (217)
140 PF06277 EutA: Ethanolamine ut 94.5 0.15 3.3E-06 64.6 10.2 165 870-1050 5-178 (473)
141 PRK05601 DNA polymerase III su 94.5 0.27 6E-06 60.9 11.9 136 337-484 43-245 (377)
142 KOG2249|consensus 94.4 0.3 6.6E-06 57.3 11.5 132 341-491 106-269 (280)
143 cd06131 DNA_pol_III_epsilon_Ec 94.4 0.36 7.8E-06 53.6 11.9 85 383-484 73-166 (167)
144 TIGR01406 dnaQ_proteo DNA poly 94.3 0.36 7.9E-06 56.7 12.3 127 342-486 2-170 (225)
145 cd05160 DEDDy_DNA_polB_exo DED 94.3 0.45 9.9E-06 54.4 12.7 99 1827-1926 67-198 (199)
146 cd06131 DNA_pol_III_epsilon_Ec 94.1 0.55 1.2E-05 52.1 12.7 85 1828-1929 73-166 (167)
147 COG2176 PolC DNA polymerase II 94.1 0.28 6E-06 67.0 11.6 140 1781-1943 417-594 (1444)
148 PRK05168 ribonuclease T; Provi 94.0 0.75 1.6E-05 53.5 13.8 148 330-493 7-206 (211)
149 COG4972 PilM Tfp pilus assembl 93.9 1.5 3.2E-05 53.4 16.1 56 1015-1081 195-250 (354)
150 PRK06309 DNA polymerase III su 93.8 1 2.2E-05 53.2 14.7 129 341-489 3-167 (232)
151 PRK07246 bifunctional ATP-depe 93.8 0.88 1.9E-05 63.0 16.2 90 1828-1936 78-173 (820)
152 PRK07883 hypothetical protein; 93.8 0.59 1.3E-05 61.9 14.0 135 1781-1936 11-185 (557)
153 PRK09145 DNA polymerase III su 93.8 1.1 2.3E-05 51.8 14.5 135 1775-1930 19-198 (202)
154 TIGR01406 dnaQ_proteo DNA poly 93.7 0.76 1.6E-05 54.1 13.4 87 1828-1931 74-170 (225)
155 TIGR00573 dnaq exonuclease, DN 93.7 0.64 1.4E-05 54.3 12.7 92 1828-1936 79-180 (217)
156 KOG2405|consensus 93.6 0.017 3.8E-07 69.6 -0.4 126 361-489 215-362 (458)
157 PRK09145 DNA polymerase III su 93.6 0.96 2.1E-05 52.2 13.8 134 331-485 20-198 (202)
158 COG4820 EutJ Ethanolamine util 93.6 0.025 5.4E-07 63.2 0.8 82 987-1081 116-197 (277)
159 PRK05711 DNA polymerase III su 93.6 0.65 1.4E-05 55.1 12.5 87 1829-1932 79-175 (240)
160 PRK05711 DNA polymerase III su 93.5 0.67 1.4E-05 55.0 12.5 128 341-487 5-175 (240)
161 TIGR01298 RNaseT ribonuclease 93.5 0.63 1.4E-05 53.7 12.0 83 1838-1936 105-195 (200)
162 COG2176 PolC DNA polymerase II 93.5 0.18 3.9E-06 68.6 8.3 137 336-493 417-591 (1444)
163 cd05160 DEDDy_DNA_polB_exo DED 93.3 0.68 1.5E-05 53.0 11.8 99 382-481 67-198 (199)
164 cd06134 RNaseT DEDDh 3'-5' exo 93.0 1.3 2.8E-05 50.7 13.4 78 394-487 103-188 (189)
165 PRK06309 DNA polymerase III su 93.0 1.6 3.5E-05 51.5 14.7 88 1829-1934 72-167 (232)
166 PRK07246 bifunctional ATP-depe 93.0 0.75 1.6E-05 63.7 13.5 131 340-492 7-174 (820)
167 PF13482 RNase_H_2: RNase_H su 92.9 0.29 6.3E-06 54.1 7.9 141 343-484 1-163 (164)
168 TIGR01407 dinG_rel DnaQ family 92.9 1.2 2.7E-05 62.0 15.7 130 342-492 2-169 (850)
169 cd05780 DNA_polB_Kod1_like_exo 92.9 1.5 3.2E-05 50.5 13.7 102 1827-1929 60-195 (195)
170 PRK09146 DNA polymerase III su 92.8 1.6 3.4E-05 51.9 14.2 87 1829-1934 122-228 (239)
171 PRK05168 ribonuclease T; Provi 92.5 1.5 3.3E-05 51.0 13.3 83 1838-1936 114-204 (211)
172 smart00479 EXOIII exonuclease 92.4 1.3 2.9E-05 48.7 12.3 89 383-489 72-168 (169)
173 PRK05601 DNA polymerase III su 92.4 1.3 2.8E-05 55.2 13.0 136 1782-1929 43-245 (377)
174 cd06134 RNaseT DEDDh 3'-5' exo 92.4 2 4.3E-05 49.2 13.9 78 1839-1932 103-188 (189)
175 PF13482 RNase_H_2: RNase_H su 92.3 0.35 7.7E-06 53.4 7.5 141 1788-1929 1-163 (164)
176 TIGR01407 dinG_rel DnaQ family 92.1 1.8 3.8E-05 60.6 15.6 89 1828-1935 72-167 (850)
177 cd06143 PAN2_exo DEDDh 3'-5' e 92.1 0.4 8.6E-06 53.9 7.5 80 1829-1926 94-173 (174)
178 PRK09146 DNA polymerase III su 91.9 1.7 3.7E-05 51.6 12.9 130 339-489 46-228 (239)
179 cd06127 DEDDh DEDDh 3'-5' exon 91.6 0.93 2E-05 48.8 9.7 81 383-481 71-158 (159)
180 cd06127 DEDDh DEDDh 3'-5' exon 91.5 1.3 2.8E-05 47.7 10.7 82 1827-1926 70-158 (159)
181 KOG2405|consensus 91.4 0.016 3.5E-07 69.9 -4.5 140 334-476 53-215 (458)
182 smart00479 EXOIII exonuclease 91.4 2.1 4.6E-05 47.1 12.4 90 1827-1934 71-168 (169)
183 cd05780 DNA_polB_Kod1_like_exo 91.2 1.8 3.9E-05 49.7 12.0 102 382-484 60-195 (195)
184 cd06130 DNA_pol_III_epsilon_li 91.1 2.3 5E-05 46.4 12.2 79 383-481 69-154 (156)
185 PRK08074 bifunctional ATP-depe 90.7 2.9 6.2E-05 59.0 15.4 89 1828-1935 76-171 (928)
186 cd06136 TREX1_2 DEDDh 3'-5' ex 90.6 2.2 4.8E-05 48.2 11.7 79 384-481 87-174 (177)
187 COG0514 RecQ Superfamily II DN 90.6 0.45 9.8E-06 62.4 6.9 72 538-609 517-588 (590)
188 PRK08074 bifunctional ATP-depe 90.2 3.4 7.3E-05 58.4 15.4 132 341-492 4-173 (928)
189 cd06136 TREX1_2 DEDDh 3'-5' ex 89.1 3.4 7.5E-05 46.7 11.7 81 1828-1927 86-175 (177)
190 PRK06195 DNA polymerase III su 88.8 5.4 0.00012 49.2 14.1 89 383-491 72-167 (309)
191 cd06130 DNA_pol_III_epsilon_li 88.7 5.4 0.00012 43.5 12.6 79 1828-1926 69-154 (156)
192 PRK09182 DNA polymerase III su 88.5 5.5 0.00012 48.8 13.7 100 383-507 112-214 (294)
193 TIGR03706 exo_poly_only exopol 88.1 1.9 4E-05 53.0 9.5 87 966-1054 74-164 (300)
194 PRK10854 exopolyphosphatase; P 87.5 3.9 8.4E-05 54.0 12.4 152 870-1053 13-175 (513)
195 PRK00448 polC DNA polymerase I 87.4 2.5 5.5E-05 61.3 11.3 137 336-493 415-589 (1437)
196 PRK07247 DNA polymerase III su 87.0 4.3 9.3E-05 46.9 10.9 85 383-488 76-169 (195)
197 PRK06195 DNA polymerase III su 87.0 11 0.00025 46.5 15.3 88 1828-1935 72-166 (309)
198 PRK11031 guanosine pentaphosph 86.4 5.7 0.00012 52.2 13.0 88 965-1054 79-171 (496)
199 PRK00448 polC DNA polymerase I 85.5 5.1 0.00011 58.3 12.7 89 1829-1936 492-587 (1437)
200 PRK07247 DNA polymerase III su 85.5 10 0.00022 43.8 12.9 87 1827-1934 75-170 (195)
201 cd05785 DNA_polB_like2_exo Unc 85.1 8.9 0.00019 44.7 12.4 139 1785-1926 9-206 (207)
202 PF09281 Taq-exonuc: Taq polym 85.0 2.9 6.3E-05 44.4 7.3 72 1843-1933 67-138 (138)
203 KOG0103|consensus 84.7 9.3 0.0002 50.7 13.2 98 963-1061 137-247 (727)
204 PRK09182 DNA polymerase III su 83.7 15 0.00032 45.3 13.9 84 1828-1931 112-199 (294)
205 KOG0101|consensus 83.5 15 0.00034 48.8 14.6 94 964-1058 144-245 (620)
206 PRK11779 sbcB exonuclease I; P 83.3 11 0.00024 49.2 13.2 129 340-487 6-197 (476)
207 cd05785 DNA_polB_like2_exo Unc 82.5 9.7 0.00021 44.4 11.3 137 341-481 10-206 (207)
208 COG0248 GppA Exopolyphosphatas 79.6 4.7 0.0001 52.6 8.1 156 869-1054 4-168 (492)
209 PRK11779 sbcB exonuclease I; P 79.4 27 0.00059 45.7 14.8 87 1829-1932 84-197 (476)
210 PRK07983 exodeoxyribonuclease 78.8 24 0.00051 41.6 12.9 78 1839-1932 75-153 (219)
211 cd05784 DNA_polB_II_exo DEDDy 78.7 11 0.00023 43.5 9.9 98 1827-1927 55-193 (193)
212 COG4819 EutA Ethanolamine util 78.5 16 0.00034 44.6 11.1 167 868-1050 5-180 (473)
213 TIGR03123 one_C_unchar_1 proba 78.4 20 0.00043 44.5 12.5 25 1013-1037 128-152 (318)
214 cd05781 DNA_polB_B3_exo DEDDy 78.2 29 0.00062 39.9 13.1 142 1786-1929 4-188 (188)
215 KOG1275|consensus 76.6 2.2 4.8E-05 57.2 3.8 93 388-504 1009-1102(1118)
216 KOG3657|consensus 75.8 6.4 0.00014 52.6 7.5 95 1838-1935 241-385 (1075)
217 PRK07983 exodeoxyribonuclease 74.6 37 0.00081 40.0 13.0 76 395-486 76-152 (219)
218 PF11408 Helicase_Sgs1: Sgs1 R 74.2 6.9 0.00015 38.7 5.6 56 541-596 8-63 (80)
219 KOG1275|consensus 73.2 1.6 3.5E-05 58.4 1.4 97 1833-1950 1009-1107(1118)
220 PRK07748 sporulation inhibitor 72.2 31 0.00067 40.1 11.5 89 383-488 84-180 (207)
221 PRK07748 sporulation inhibitor 71.2 45 0.00097 38.8 12.5 90 1827-1933 83-180 (207)
222 cd05779 DNA_polB_epsilon_exo D 70.2 49 0.0011 38.6 12.4 98 1827-1927 77-204 (204)
223 cd05784 DNA_polB_II_exo DEDDy 69.5 21 0.00046 41.1 9.3 97 383-482 56-193 (193)
224 TIGR02259 benz_CoA_red_A benzo 65.3 5.9 0.00013 49.9 3.8 52 1398-1452 381-432 (432)
225 PF14450 FtsA: Cell division p 63.8 25 0.00054 37.3 7.8 59 1016-1085 2-71 (120)
226 PF02541 Ppx-GppA: Ppx/GppA ph 63.4 20 0.00043 43.6 8.0 85 966-1054 60-151 (285)
227 COG0847 DnaQ DNA polymerase II 63.3 82 0.0018 37.2 12.9 88 1829-1932 87-181 (243)
228 TIGR03286 methan_mark_15 putat 63.0 4 8.6E-05 51.7 1.9 67 1377-1453 335-402 (404)
229 TIGR02261 benz_CoA_red_D benzo 62.4 5 0.00011 48.2 2.5 50 1400-1452 213-262 (262)
230 cd05782 DNA_polB_like1_exo Unc 62.1 50 0.0011 38.6 10.5 129 351-482 45-207 (208)
231 cd05782 DNA_polB_like1_exo Unc 61.8 79 0.0017 37.0 12.1 129 1796-1927 45-207 (208)
232 COG0847 DnaQ DNA polymerase II 61.6 59 0.0013 38.5 11.3 132 340-487 13-181 (243)
233 cd06133 ERI-1_3'hExo_like DEDD 61.4 96 0.0021 34.4 12.4 86 383-484 80-175 (176)
234 cd05783 DNA_polB_B1_exo DEDDy 61.2 1E+02 0.0022 35.9 12.8 96 1827-1927 77-202 (204)
235 cd05781 DNA_polB_B3_exo DEDDy 59.5 96 0.0021 35.7 12.1 142 341-484 4-188 (188)
236 TIGR00241 CoA_E_activ CoA-subs 59.2 9.5 0.0002 45.5 4.1 42 1401-1450 206-247 (248)
237 cd06138 ExoI_N N-terminal DEDD 58.8 45 0.00098 37.9 9.3 80 1829-1925 75-181 (183)
238 PF09281 Taq-exonuc: Taq polym 58.1 25 0.00055 37.7 6.3 69 402-488 70-138 (138)
239 cd05779 DNA_polB_epsilon_exo D 57.8 1.1E+02 0.0024 35.7 12.3 97 383-482 78-204 (204)
240 KOG2248|consensus 57.2 25 0.00054 44.6 7.3 83 1829-1929 286-371 (380)
241 PRK13317 pantothenate kinase; 57.1 9.8 0.00021 46.3 3.7 72 1377-1453 200-273 (277)
242 PRK13324 pantothenate kinase; 56.7 1.8E+02 0.004 35.2 14.2 19 870-888 2-20 (258)
243 TIGR03192 benz_CoA_bzdQ benzoy 55.8 6.1 0.00013 48.2 1.7 49 1397-1453 238-287 (293)
244 TIGR00241 CoA_E_activ CoA-subs 54.7 1.5E+02 0.0033 35.4 13.2 45 1014-1058 92-137 (248)
245 COG3359 Predicted exonuclease 53.1 2.2E+02 0.0047 34.2 13.2 149 1786-1936 99-272 (278)
246 PF01968 Hydantoinase_A: Hydan 51.7 16 0.00035 44.8 4.4 32 1004-1037 69-101 (290)
247 PRK06722 exonuclease; Provisio 51.6 1.9E+02 0.0042 35.5 13.4 85 1828-1930 82-178 (281)
248 PRK13321 pantothenate kinase; 50.8 1.5E+02 0.0033 35.7 12.4 18 871-888 3-20 (256)
249 KOG2248|consensus 49.7 56 0.0012 41.6 8.7 83 384-484 286-371 (380)
250 cd05783 DNA_polB_B1_exo DEDDy 49.2 1.9E+02 0.0041 33.8 12.5 96 382-482 77-202 (204)
251 cd06133 ERI-1_3'hExo_like DEDD 47.9 3E+02 0.0064 30.5 13.5 86 1828-1929 80-175 (176)
252 COG1924 Activator of 2-hydroxy 46.1 12 0.00025 46.8 2.0 45 1402-1454 346-390 (396)
253 PRK06722 exonuclease; Provisio 44.7 1.5E+02 0.0032 36.5 11.0 86 383-486 82-179 (281)
254 KOG0100|consensus 44.7 1.5E+02 0.0032 37.5 10.7 100 953-1058 167-273 (663)
255 KOG3657|consensus 43.2 45 0.00097 45.2 6.6 97 393-492 241-387 (1075)
256 COG1548 Predicted transcriptio 42.4 16 0.00035 43.2 2.3 23 1012-1034 129-151 (330)
257 PRK05762 DNA polymerase II; Re 42.3 2.4E+02 0.0052 39.7 13.8 100 1827-1929 207-348 (786)
258 COG3359 Predicted exonuclease 41.5 2.2E+02 0.0049 34.1 11.1 150 341-491 99-272 (278)
259 cd06138 ExoI_N N-terminal DEDD 38.7 79 0.0017 36.0 7.1 80 384-480 75-181 (183)
260 PF08841 DDR: Diol dehydratase 37.5 1.6E+02 0.0034 36.0 9.2 99 975-1084 93-196 (332)
261 PF10925 DUF2680: Protein of u 37.4 59 0.0013 30.6 4.7 33 16-48 21-53 (59)
262 PF03309 Pan_kinase: Type III 34.8 4.5E+02 0.0097 30.6 12.6 18 871-888 2-19 (206)
263 COG1521 Pantothenate kinase ty 34.8 2.9E+02 0.0064 33.4 11.1 20 871-890 3-22 (251)
264 PF00929 RNase_T: Exonuclease; 33.1 19 0.0004 38.7 0.9 81 384-481 75-164 (164)
265 PRK05762 DNA polymerase II; Re 30.9 2.4E+02 0.0052 39.7 11.1 100 382-484 207-348 (786)
266 PRK13318 pantothenate kinase; 30.3 6.9E+02 0.015 30.1 13.6 17 871-887 3-19 (258)
267 TIGR03286 methan_mark_15 putat 30.0 2.9E+02 0.0063 35.6 10.6 84 941-1036 179-264 (404)
268 PRK13917 plasmid segregation p 28.7 33 0.00072 43.1 2.2 44 1399-1453 292-335 (344)
269 PF01869 BcrAD_BadFG: BadF/Bad 26.8 10 0.00022 45.7 -2.8 67 1378-1452 205-271 (271)
270 smart00842 FtsA Cell division 24.7 2.2E+02 0.0047 32.5 7.7 24 931-954 36-59 (187)
271 TIGR00671 baf pantothenate kin 22.3 6.6E+02 0.014 30.2 11.3 18 871-888 2-19 (243)
272 TIGR00744 ROK_glcA_fam ROK fam 20.9 8.5E+02 0.018 29.9 12.4 55 982-1038 89-148 (318)
No 1
>KOG0681|consensus
Probab=100.00 E-value=1.2e-89 Score=811.59 Aligned_cols=615 Identities=38% Similarity=0.643 Sum_probs=498.1
Q ss_pred cCCCCCCCCCCCccccccccCCCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceecccccccccc
Q psy15183 845 MAKPDTKILPDPYYEYLDELRDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAV 924 (1973)
Q Consensus 845 ~~~~~~~~~p~~~~~~~~~~~~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~ 924 (1973)
..+.|....|+|+- + .++. ...||||||||+.|||||+|+..|+++|+|++.|+++.... ....+||+++......
T Consensus 3 ~~~r~p~a~p~p~~-~-q~~~-n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~-~s~t~vgnd~~~~~~~ 78 (645)
T KOG0681|consen 3 LELRDPRAFPDPNR-E-QSYS-NTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLG-ASVTLVGNDILNFQGV 78 (645)
T ss_pred eeccCccccCCchh-h-hccc-CCCcEEEeCCceeEeecccCCCCccchhhhhhccccccccc-cccccccchhhhhhhh
Confidence 34445445566663 0 1122 26799999999999999999999999999999999966522 2245999999998888
Q ss_pred ccEEeecccCCcccCHHHHHHHHHHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHh
Q psy15183 925 RFQLKTQFDKNVVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFS 1004 (1973)
Q Consensus 925 ~~~l~~Pi~~G~V~dwd~le~i~~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS 1004 (1973)
+...++||++.+|+||+.+|+|+||+|.+||++..+ ++|||||||+.+||..+|+.|+|+|||+||||+|.++.++++|
T Consensus 79 Rs~~rSPFd~nVvtNwel~E~ilDY~F~~LG~~~~~-idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS 157 (645)
T KOG0681|consen 79 RSSPRSPFDRNVVTNWELMEQILDYIFGKLGVDGQG-IDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFS 157 (645)
T ss_pred hccCCCCCcCCccccHHHHHHHHHHHHHhcCCCccC-CCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHH
Confidence 888999999999999999999999999999999986 8999999999999999999999999999999999999999999
Q ss_pred hhhcCC--CCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhe
Q psy15183 1005 YQYNGW--EGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYG 1082 (1973)
Q Consensus 1005 ~ya~G~--g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c 1082 (1973)
+|.+-. ++.+|+||++||++|||+||.||..+...++|+|+||.+++.||.+||+.+||.|.+.+++..++.+++.||
T Consensus 158 ~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHc 237 (645)
T KOG0681|consen 158 FYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHC 237 (645)
T ss_pred HhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhc
Confidence 996422 135799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHhhhccccccccceecccCcc-CCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH------HHHH
Q psy15183 1083 FVATDYREHLRKWLDAEFYDSNVVKVQLPYA-VPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDE------RHLN 1155 (1973)
Q Consensus 1083 ~va~dy~~el~~~~~~~~~~~~~~~iqlP~~-~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e------~~l~ 1155 (1973)
||++||.+++..|...+.++++.+++|+||. ++.++ +....+++|++ +||+++++-+|.+++.+.+ ++|.
T Consensus 238 yis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~-e~~l~Ae~kqe--kRlq~~a~lkrv~k~~~re~~redeqql~ 314 (645)
T KOG0681|consen 238 YISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEV-ELALTAEKKQE--KRLQEQAALKRVEKINARENRREDEQQLE 314 (645)
T ss_pred eeCcchHHHHHHHhhhhhhhccceEEecccccccchh-hhhccHHHHHH--HHHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 9999999999999999999999999999999 33332 12235556665 7888888888887776663 3333
Q ss_pred HHHHHHHHhhcCCCCchhhHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcc--cCcch
Q psy15183 1156 ELLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEI--AVPES 1233 (1973)
Q Consensus 1156 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~--~~p~~ 1233 (1973)
.+..++...++. .. +...+.-....++-+. .+-..+.++++...+.+.+|-+-+ ||...|+ +.-++
T Consensus 315 ~~~kaq~e~e~~---~D-~~q~~~ll~v~~eL~~-------d~lk~k~~qr~lkas~dar~rar~-eke~Er~~k~~~~r 382 (645)
T KOG0681|consen 315 SYNKAQGEQESN---LD-LEQKFPLLNVPAELDE-------DQLKEKKKQRILKASTDARLRARV-EKELERLNKLEEER 382 (645)
T ss_pred HHHHhhhchhcC---cc-HhhhchhhcchhhhCH-------HHHHHHHHHHHHHhhhhhhccccc-cchHHHhhcccccc
Confidence 332222111111 00 1111111111111111 111122222222222222222111 1111111 11223
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh--------ccCCCCCCCCCcchhhhhh
Q psy15183 1234 EAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARK--------EKRDDDFGMRDEDWDVYKV 1305 (1973)
Q Consensus 1234 ~~~~~~~~~~~r~~r~~i~~k~~~r~~~~~~~~~r~s~a~q~r~~~i~~~~~~--------~~~~d~f~lpd~dw~vy~~ 1305 (1973)
..++..|++++|.++..++++++++++++.++++|+|.++|.||+.++.++.+ ...+|.||+.|+||++|.+
T Consensus 383 ~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~ 462 (645)
T KOG0681|consen 383 EENLISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYED 462 (645)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHH
Confidence 47799999999999999999999999999999999999999999999999887 2348889999999999965
Q ss_pred hccCCCCCChHHHHHHHHHHHHHHhhCCCCcccccccc--------ccCCCCCcEEEecceeeecccccCCCCCcCcccc
Q psy15183 1306 INKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQ--------ELSPKEANQLHIGVERMCGPECLFQPSMLGSIQA 1377 (1973)
Q Consensus 1306 i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~~~~~--------~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~ 1377 (1973)
+ +.+.+.+.+.+..++..|.++||.|+...... +.-+.+.+++++|+||+++|||+|+|+++|.+|+
T Consensus 463 l-----ee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQa 537 (645)
T KOG0681|consen 463 L-----EEENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQA 537 (645)
T ss_pred h-----hhhhhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhh
Confidence 4 22233445788899999999999999974221 1124778899999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceeccccccccccc
Q psy15183 1378 GISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENF 1457 (1973)
Q Consensus 1378 gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf 1457 (1973)
||.|++..++.+.|.+.+..|.+||+||||+|++||+.+||..||+++.|.++.|+|+.+.||..+||+||+.||....|
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f 617 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTF 617 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeHHHHhhcCCceeecccCCCCc
Q psy15183 1458 HDFAVTQSDYQEKGGEFFRVHPCSNNK 1484 (1973)
Q Consensus 1458 ~~~~ITreeY~E~G~~il~rk~~~n~~ 1484 (1973)
...||||+||+|.|+.+++.++++|..
T Consensus 618 ~~~~~Tr~dy~E~G~e~~kEh~~~n~~ 644 (645)
T KOG0681|consen 618 TLTQITRKDYEEKGEEYLKEHVASNIY 644 (645)
T ss_pred chhhhhHHhhhhhhHHHHHHHhhcccc
Confidence 999999999999999999999988754
No 2
>KOG2206|consensus
Probab=100.00 E-value=2.1e-79 Score=730.48 Aligned_cols=543 Identities=35% Similarity=0.557 Sum_probs=463.7
Q ss_pred cccHHHHHHHHHHHHHhhhhcccCCCCccccccccccCCCCCCc---cchHHHHHHHHHHHHhhcccCCCCCC--Ccccc
Q psy15183 91 SKTLDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGV---AGTSDKVMTLVDSLLKTQNISKSMSK--LYLEG 165 (1973)
Q Consensus 91 s~~~~~~~~~~~~~~~~~~~~~~~lp~~~~d~~f~~s~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 165 (1973)
+...+.|++.+.++++.+++. ||+||+| ||+| +..++|++.+|+.+..++||.++.-+ .++++
T Consensus 3 s~~~ds~~k~~~~s~~~~t~~---------D~~fY~s---f~~F~~~~~~~~rl~~~mn~v~~s~~~~~~~~d~~~~~~~ 70 (687)
T KOG2206|consen 3 SENPDSLVKRVINSVRAATSL---------DYDFYYS---FPGFSKLKSKADRLADMMNEVILSIGCHSESFDRPEDIED 70 (687)
T ss_pred cccHHHHHHHHhhccccceec---------cceeecc---CchhhhcchhHHHHHHHHHHHHHhhhccccccCCchhHHH
Confidence 345678888888887666654 9999999 7777 88999999999999999999887733 88999
Q ss_pred ccchhhhhhHHHHhhhchhhhhhcCCCCCCCCCCCCcccccccccccccccchhhhcccccccccccccccCCCCCCCcc
Q psy15183 166 QKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQ 245 (1973)
Q Consensus 166 ~~~~~~~~~D~lle~~~~~ld~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~kPQ 245 (1973)
.|++++++||+|+||+|++|||+++.++..... ..++|++..+ + +.++ +.++|.|||
T Consensus 71 ~~d~l~~~~D~i~Er~d~~lDe~k~~~k~e~~~-----~~s~~~r~fs---------G-Ka~s--------p~~~l~kpq 127 (687)
T KOG2206|consen 71 LWDNLGNANDNILERFDHLLDELKRARKSESRG-----SPSEYDREFS---------G-KAKS--------PTMNLLKPQ 127 (687)
T ss_pred HHHHHHhhhhHHHHHhcchHHHHHhhhhccccC-----Chhhhhhhcc---------c-cccC--------ccccccchH
Confidence 999999999999999999999999999873211 1256676522 1 1222 257899999
Q ss_pred cccCcCCCCCCCCCCcccCCcCCCCCChhhHhhhhcc-CCCCCCCCcHHHhccCCCCccccccCCCCCCCCCCCCCcEEe
Q psy15183 246 LQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD-AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMI 324 (1973)
Q Consensus 246 ~~f~~~~dn~~~~pf~p~l~~Kp~a~~~l~~~~~~~~-~~~~~~hPy~~ei~~~~~~~~~~~~~~p~~~~p~~~~~~~~I 324 (1973)
++|+.+|||+. +||.|++.+ .....+ ...++.|||+||+.+|.+.+.+++..+|..+.|+..+++.||
T Consensus 128 ~~f~~~idn~~-~pf~~~~~~----------~vEr~e~~~~~~~hpye~e~~~f~~~~~~le~~~~~~~~~le~T~~~~I 196 (687)
T KOG2206|consen 128 VRFVEGIDNLH-HPFCSMLAS----------EVERLEDRPREVQHPYEDEERHFRQIDKQLEEGEPRKSSPLEITPKVWI 196 (687)
T ss_pred HHHhhcccccc-CCchhhhhh----------hhhchhhcchhccCcchhhhhhhcccchhhhcccccCCCcccccCceee
Confidence 99999999997 999999864 112222 355699999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeecchhHh
Q psy15183 325 TEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSD 404 (1973)
Q Consensus 325 dt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~D 404 (1973)
++..+|.++.+.|....++|+|+|+|++++|.|.+|||||+|++++|+||++.+++.+..|+++|.||+|+||+||++.|
T Consensus 197 ~t~~el~~l~~~l~~~~Efavdlehhsyrsf~gltclmqISTr~ed~iIDt~~l~~~i~~l~e~fsdp~ivkvfhgaD~d 276 (687)
T KOG2206|consen 197 CTLGELEALPEILDSVIEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTFKLRDHIGILNEVFSDPGIVKVFHGADTD 276 (687)
T ss_pred echHHHHHHHHHHhhhhhhhhhccccchhhhcCceeEEEeeccchhheehhHHHHHHHHHhhhhccCCCeEEEEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 405 IKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 405 l~~L~r~~Gi~~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
+.|||++|||+++|+|||..|+++||.+++||++|++.|||+..+|.+|++||++|||+.+|+.||+.|+|||++||+.|
T Consensus 277 iiwlqrdfgiyvvnLfdt~~a~r~L~~~r~sL~~ll~~~~~v~~nk~yqladwR~rpLp~~Mv~yar~dthyllyiyD~l 356 (687)
T KOG2206|consen 277 IIWLQRDFGIYVVNLFDTIQASRLLGLPRPSLAYLLECVCGVLTNKKYQLADWRIRPLPEEMVRYAREDTHYLLYIYDVL 356 (687)
T ss_pred hhhhhccceEEEEechhhHHHHHHhCCCcccHHHHHHHHHhhhhhhhhhhchhccccCcHHHHHHHhhcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCcccc
Q psy15183 485 KLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVL 564 (1973)
Q Consensus 485 ~~~L~e~g~~~~~~l~~v~~e~e~~~~~~y~~~~~~~~~~~~~~~k~~~l~~~ql~~l~~L~~WRd~~Ar~~D~s~~~Vl 564 (1973)
+.+|.+.+.+. .-.+.++..+|.+.|.++.+..++|+.++.....++++|+.+|++|++|||.+||.+|||++|||
T Consensus 357 r~el~~~a~~~----~~~~~~~~d~c~~~~~k~~~~~~sy~~v~~~q~~ln~~q~~~l~~L~~wRd~iARaeDES~~yVl 432 (687)
T KOG2206|consen 357 RKELKRLAKGR----AVTYSESRDMCTNGYKKKTFCTKSYLEVEDIQSRLNSSQLDVLRALLRWRDFIARAEDESVHYVL 432 (687)
T ss_pred HHHHHHHhccc----ccccchhhhhhhcceecccCCCcchHhHHHHHhccchhHHHHHHHHHHHHHHHHhhccCCCceec
Confidence 99999887542 44567888999999999999999999998887789999999999999999999999999999999
Q ss_pred cchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHhcCCCCCccc--cCCchhhhhhhhccccCCCCCcc
Q psy15183 565 PNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEK--LQPSLDGMKKKQQQQVSPPHDSM 642 (1973)
Q Consensus 565 ~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 642 (1973)
||++|++||+.+|.+.++|++||++.+|+||||+++++.+|..|++..+...... +..+-..+-...-+..+.|||.+
T Consensus 433 pN~~ll~l~e~~P~~v~gl~~~ln~~~p~vkq~~~~~~~ii~~a~~~~l~~~~~a~g~~~sp~~v~~~l~e~i~~~~d~~ 512 (687)
T KOG2206|consen 433 PNDQLLKLAEERPDTVDGLLGGLNRLSPLVKQNVMDFLYIIRSAGRGFLLQNLTASGRKSSPTKVDEILIEPISEPHDTG 512 (687)
T ss_pred ccHHHHHHHHHCCccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhchhhccCCCCCcchhhhhhcccccccccc
Confidence 9999999999999999999999999999999999999999999998776532111 00000001112223355555522
Q ss_pred cccccCCCCCCCCCCcccCCcccccccCCcccccccccccccccccccc-cccchhhhhhhhcccCcccc
Q psy15183 643 DCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIG-SNKYQKIKLKTSRFETPYQR 711 (1973)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 711 (1973)
..- ++.. ..-++++++++... -+..+|.+..++.+|+++++
T Consensus 513 e~~---------ss~s-------------------l~~~~~~~~~k~ss~~g~l~K~~~d~~~~ed~~~k 554 (687)
T KOG2206|consen 513 ERA---------SSSS-------------------LEKSLVNESKKSSSGLGKLLKEEHDEEVSEDLPNK 554 (687)
T ss_pred ccc---------cccc-------------------cchhhhcccccccccccccchhhhhHHhhhhhhhh
Confidence 111 0111 11278888777655 33467999999999998887
No 3
>PTZ00452 actin; Provisional
Probab=100.00 E-value=7.4e-68 Score=650.93 Aligned_cols=368 Identities=22% Similarity=0.382 Sum_probs=327.2
Q ss_pred CCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCC---ccccceeccccccccccccEEeecccCCcccCHHHH
Q psy15183 867 SSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGK---KDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQ 943 (1973)
Q Consensus 867 ~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~---~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~l 943 (1973)
..++||||+||+++||||||++.|+++|||+||+++...+. .....++|+++..... .+.+++|+++|.|.|||++
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~-~~~l~~Pi~~G~I~dwd~~ 82 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRG-VLAIKEPIQNGIINSWDDI 82 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhcccc-CcEEcccCcCCEEcCHHHH
Confidence 35689999999999999999999999999999998765321 1224689999866433 4899999999999999999
Q ss_pred HHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCC
Q psy15183 944 EQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGY 1022 (1973)
Q Consensus 944 e~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~ 1022 (1973)
|.+|+|+| +.|+++|+ ++||+|||++++++..|++|+|+|||+|++|+++++.+++||+|++|+ +||||||+|+
T Consensus 83 e~iw~~~f~~~l~v~p~---~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~--~tglVVDiG~ 157 (375)
T PTZ00452 83 EIIWHHAFYNELCMSPE---DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK--TIGLVVDSGE 157 (375)
T ss_pred HHHHHHHHHhhcCCCcc---cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC--ceeeeecCCC
Confidence 99999999 57999987 899999999999999999999999999999999999999999999999 9999999999
Q ss_pred CceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhcccccc
Q psy15183 1023 QCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFYD 1102 (1973)
Q Consensus 1023 s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~~~~ 1102 (1973)
+.|+|+||+||++++++++|+++||+++|+||.++|..++..+....+...+++|||++|||+.||.+++..+.
T Consensus 158 ~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~------ 231 (375)
T PTZ00452 158 GVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYK------ 231 (375)
T ss_pred CcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhh------
Confidence 99999999999999999999999999999999999987755444444566799999999999987654421100
Q ss_pred ccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhhhcC
Q psy15183 1103 SNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMG 1182 (1973)
Q Consensus 1103 ~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 1182 (1973)
..
T Consensus 232 ---------------------------------------------------------------~~--------------- 233 (375)
T PTZ00452 232 ---------------------------------------------------------------ES--------------- 233 (375)
T ss_pred ---------------------------------------------------------------cc---------------
Confidence 00
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1183 INNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRR 1262 (1973)
Q Consensus 1183 ~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~~~~ 1262 (1973)
+.
T Consensus 234 ----------------------------~~-------------------------------------------------- 235 (375)
T PTZ00452 234 ----------------------------NS-------------------------------------------------- 235 (375)
T ss_pred ----------------------------CC--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCccccccc
Q psy15183 1263 QDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQE 1342 (1973)
Q Consensus 1263 ~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~~~~ 1342 (1973)
...
T Consensus 236 --------------------------~~~--------------------------------------------------- 238 (375)
T PTZ00452 236 --------------------------QDS--------------------------------------------------- 238 (375)
T ss_pred --------------------------cCc---------------------------------------------------
Confidence 011
Q ss_pred cccCCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHH
Q psy15183 1343 QELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDL 1422 (1973)
Q Consensus 1343 ~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL 1422 (1973)
.|.+|||+.|.++.|||.|||+||+|+++|.+..||+++|.+||.+||.|+|+.|++||+|+||+|+||||.+||++||
T Consensus 239 -~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El 317 (375)
T PTZ00452 239 -PYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNEL 317 (375)
T ss_pred -eEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHH
Confidence 2445668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceeecccC
Q psy15183 1423 LENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 1480 (1973)
Q Consensus 1423 ~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk~~ 1480 (1973)
+.++|...+++|..+++|.+++|+||||||++++|+++||||++|+|+|+++++++|+
T Consensus 318 ~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 318 TNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred HHhCCCCceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 9999988889999999999999999999999999999999999999999999998874
No 4
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.7e-67 Score=648.30 Aligned_cols=366 Identities=22% Similarity=0.414 Sum_probs=327.4
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCC---CCccccceeccccccccccccEEeecccCCcccCHHHHH
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER---GKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQE 944 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~---~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le 944 (1973)
..+||||+||++|||||||++.|+.+|||+||+++... +.....+++|+++..... .+.+++||++|+|+|||++|
T Consensus 12 ~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~-~~~l~~Pi~~G~v~dwd~~e 90 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRG-LLKVTYPINHGIIENWNDME 90 (380)
T ss_pred CCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCc-CceeCccccCCeECCHHHHH
Confidence 45899999999999999999999999999999987653 111235689999876443 37899999999999999999
Q ss_pred HHHHHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCCCc
Q psy15183 945 QIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQC 1024 (1973)
Q Consensus 945 ~i~~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~s~ 1024 (1973)
.||+|+|++|+++++ ++||+|||++++++..|++|+|+|||+|++|+++++.+++||+|++|+ +||||||+|++.
T Consensus 91 ~iw~~~f~~l~v~~~---~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~--~tglVVD~G~~~ 165 (380)
T PTZ00466 91 NIWIHVYNSMKINSE---EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK--TNGTVLDCGDGV 165 (380)
T ss_pred HHHHHHHhhcccCCc---cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC--ceEEEEeCCCCc
Confidence 999999999999987 899999999999999999999999999999999999999999999999 999999999999
Q ss_pred eEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhcccccccc
Q psy15183 1025 THVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFYDSN 1104 (1973)
Q Consensus 1025 T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~~~~~~ 1104 (1973)
|+|+||+||+++.++++++++||+++++||+++|..++..+....+...++++||++|||+.||..++...
T Consensus 166 t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~--------- 236 (380)
T PTZ00466 166 CHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSS--------- 236 (380)
T ss_pred eEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhc---------
Confidence 99999999999999999999999999999999998775544445567789999999999998765432100
Q ss_pred ceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhhhcCCc
Q psy15183 1105 VVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGIN 1184 (1973)
Q Consensus 1105 ~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 1184 (1973)
.
T Consensus 237 --------------------------------------------------------------~----------------- 237 (380)
T PTZ00466 237 --------------------------------------------------------------E----------------- 237 (380)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred chhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1185 NIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQD 1264 (1973)
Q Consensus 1185 ~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~~~~~~ 1264 (1973)
..
T Consensus 238 --------------------------~~---------------------------------------------------- 239 (380)
T PTZ00466 238 --------------------------KA---------------------------------------------------- 239 (380)
T ss_pred --------------------------cc----------------------------------------------------
Confidence 00
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCccccccccc
Q psy15183 1265 LAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQE 1344 (1973)
Q Consensus 1265 ~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~~~~~~ 1344 (1973)
. ....
T Consensus 240 -------------------------~--------------------------------------------------~~~~ 244 (380)
T PTZ00466 240 -------------------------L--------------------------------------------------TTLP 244 (380)
T ss_pred -------------------------c--------------------------------------------------ccee
Confidence 0 0012
Q ss_pred cCCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHHhh
Q psy15183 1345 LSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLE 1424 (1973)
Q Consensus 1345 ~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL~~ 1424 (1973)
|.+|||.+|.++.|||++||+||+|+++|.+..||+++|.+||.+||.|.|+.|++||+|+||+|++|||.+||++||+.
T Consensus 245 y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~ 324 (380)
T PTZ00466 245 YILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRK 324 (380)
T ss_pred EECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceeecccC
Q psy15183 1425 NRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 1480 (1973)
Q Consensus 1425 l~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk~~ 1480 (1973)
+.|...+++|...++|.+++|+||||||++++|++.||||++|+|+|+++++++++
T Consensus 325 l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 325 FAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred hCCCCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 99988889999999999999999999999999999999999999999999988763
No 5
>KOG0676|consensus
Probab=100.00 E-value=3.8e-67 Score=625.25 Aligned_cols=366 Identities=27% Similarity=0.474 Sum_probs=331.4
Q ss_pred cCCCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC---CccccceeccccccccccccEEeecccCCcccCH
Q psy15183 864 LRDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHY 940 (1973)
Q Consensus 864 ~~~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~---~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dw 940 (1973)
+..+..+||||+||..||+||||++.|+.+|||++|+++.... ......++|+++...+ .+++|+++|+|+||
T Consensus 3 ~~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~----~l~~Pie~Giv~~w 78 (372)
T KOG0676|consen 3 EADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR----TLKYPIERGIVTDW 78 (372)
T ss_pred CcCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc----cccCccccccccch
Confidence 3445689999999999999999999999999999999886652 2334679999998776 57999999999999
Q ss_pred HHHHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEe
Q psy15183 941 DIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIIS 1019 (1973)
Q Consensus 941 d~le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVD 1019 (1973)
++++.||.|+| +.|+++|+ +|||++||++++|+..|++|+|+|||+|++|+++++.++++ |+.|+ +||||||
T Consensus 79 d~me~iw~~if~~~L~~~Pe---e~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~--ttG~VvD 151 (372)
T KOG0676|consen 79 DDMEKIWHHLFYSELLVAPE---EHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGR--TTGLVVD 151 (372)
T ss_pred HHHHHHHHHHHHHhhccCcc---cCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCC--eeEEEEE
Confidence 99999999999 68999998 79999999999999999999999999999999999888877 99999 9999999
Q ss_pred eCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhccc
Q psy15183 1020 CGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAE 1099 (1973)
Q Consensus 1020 iG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~ 1099 (1973)
+|++.||++||+||+++++++.++++||+++|+||+..|..++..+......+.++++|+++|||++||.+++.. ..
T Consensus 152 ~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~-~~-- 228 (372)
T KOG0676|consen 152 SGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEET-AN-- 228 (372)
T ss_pred cCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhc-cc--
Confidence 999999999999999999999999999999999999999988777777788889999999999999887665432 00
Q ss_pred cccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhh
Q psy15183 1100 FYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFK 1179 (1973)
Q Consensus 1100 ~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~ 1179 (1973)
.
T Consensus 229 -------------------------------------------------------------------~------------ 229 (372)
T KOG0676|consen 229 -------------------------------------------------------------------T------------ 229 (372)
T ss_pred -------------------------------------------------------------------c------------
Confidence 0
Q ss_pred hcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1180 SMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARK 1259 (1973)
Q Consensus 1180 ~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~ 1259 (1973)
.. .+
T Consensus 230 -------------------------------~~-------------------------------------~l-------- 233 (372)
T KOG0676|consen 230 -------------------------------SS-------------------------------------SL-------- 233 (372)
T ss_pred -------------------------------cc-------------------------------------cc--------
Confidence 00 00
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCcccc
Q psy15183 1260 QRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSL 1339 (1973)
Q Consensus 1260 ~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~ 1339 (1973)
..+|.
T Consensus 234 ------------------------------~~~y~--------------------------------------------- 238 (372)
T KOG0676|consen 234 ------------------------------ESSYE--------------------------------------------- 238 (372)
T ss_pred ------------------------------ccccc---------------------------------------------
Confidence 11133
Q ss_pred ccccccCCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHH
Q psy15183 1340 NQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLN 1419 (1973)
Q Consensus 1340 ~~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~ 1419 (1973)
+|||+.+.+++|||+|||+||+|+.+|.+..||++++.+||.+|+.|+|+.||+||+|+||+|++|||.+||+
T Consensus 239 -------lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~ 311 (372)
T KOG0676|consen 239 -------LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQ 311 (372)
T ss_pred -------CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHH
Confidence 4458889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceeecccC
Q psy15183 1420 KDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 1480 (1973)
Q Consensus 1420 ~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk~~ 1480 (1973)
+||+.+.|...+++|..++++.+++|+||||+|++++|+++|||+++|+|.|+.+++++|+
T Consensus 312 kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 312 KELQALAPSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred HHHhhcCCCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 6
>PTZ00281 actin; Provisional
Probab=100.00 E-value=4.3e-66 Score=636.55 Aligned_cols=368 Identities=24% Similarity=0.467 Sum_probs=327.5
Q ss_pred CCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC---CccccceeccccccccccccEEeecccCCcccCHHHH
Q psy15183 867 SSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQ 943 (1973)
Q Consensus 867 ~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~---~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~l 943 (1973)
+.++||||+||+++|+||||++.|++++||+||+++.... ......++|+++..... .+.+++|+++|.|.||+++
T Consensus 5 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~l~~Pi~~G~i~dwd~~ 83 (376)
T PTZ00281 5 DVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRG-ILTLKYPIEHGIVTNWDDM 83 (376)
T ss_pred cCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhcccc-CcEEeccCcCCEEcCHHHH
Confidence 4568999999999999999999999999999999876531 11224689999765433 3889999999999999999
Q ss_pred HHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCC
Q psy15183 944 EQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGY 1022 (1973)
Q Consensus 944 e~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~ 1022 (1973)
|.+|+|+| ++|+++|. ++||+||||+++++..|++|+|+|||+|++|+++++.+++||+|++|+ +||||||+|+
T Consensus 84 e~l~~~~f~~~l~v~p~---~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~--~tglVVDiG~ 158 (376)
T PTZ00281 84 EKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVMDSGD 158 (376)
T ss_pred HHHHHHHHHhhccCCCc---cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC--ceEEEEECCC
Confidence 99999999 68999988 899999999999999999999999999999999999999999999999 9999999999
Q ss_pred CceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhcccccc
Q psy15183 1023 QCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFYD 1102 (1973)
Q Consensus 1023 s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~~~~ 1102 (1973)
+.|+|+||+||+++.++++++++||+++++||+++|..++..+.+..+...+++||+++|||+.||..++....
T Consensus 159 ~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~------ 232 (376)
T PTZ00281 159 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAA------ 232 (376)
T ss_pred ceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhh------
Confidence 99999999999999999999999999999999999988866555555677899999999999877543321000
Q ss_pred ccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhhhcC
Q psy15183 1103 SNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMG 1182 (1973)
Q Consensus 1103 ~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 1182 (1973)
.
T Consensus 233 ----------------------------------------------------------------~--------------- 233 (376)
T PTZ00281 233 ----------------------------------------------------------------S--------------- 233 (376)
T ss_pred ----------------------------------------------------------------c---------------
Confidence 0
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1183 INNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRR 1262 (1973)
Q Consensus 1183 ~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~~~~ 1262 (1973)
.. .+
T Consensus 234 ----------------------------~~-------------------------------------~~----------- 237 (376)
T PTZ00281 234 ----------------------------SS-------------------------------------AL----------- 237 (376)
T ss_pred ----------------------------Cc-------------------------------------cc-----------
Confidence 00 00
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCccccccc
Q psy15183 1263 QDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQE 1342 (1973)
Q Consensus 1263 ~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~~~~ 1342 (1973)
..
T Consensus 238 ---------------------------~~--------------------------------------------------- 239 (376)
T PTZ00281 238 ---------------------------EK--------------------------------------------------- 239 (376)
T ss_pred ---------------------------ce---------------------------------------------------
Confidence 01
Q ss_pred cccCCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHH
Q psy15183 1343 QELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDL 1422 (1973)
Q Consensus 1343 ~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL 1422 (1973)
.|.+|||+.|.++.|||.+||+||+|+.+|.+..||+++|.+||.+||.|+|+.|++|||||||+|+||||.+||++||
T Consensus 240 -~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El 318 (376)
T PTZ00281 240 -SYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKEL 318 (376)
T ss_pred -eEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHH
Confidence 2345568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceeecccC
Q psy15183 1423 LENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 1480 (1973)
Q Consensus 1423 ~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk~~ 1480 (1973)
+.+.|...+++|..+++|.+++|+||||+|++++|++.||||++|+|+|+++++++|.
T Consensus 319 ~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 319 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred HHhCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 9999988889999999999999999999999999999999999999999999998763
No 7
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.6e-64 Score=623.34 Aligned_cols=370 Identities=24% Similarity=0.445 Sum_probs=327.7
Q ss_pred CCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC---CccccceeccccccccccccEEeecccCCcccCHHH
Q psy15183 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDI 942 (1973)
Q Consensus 866 ~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~---~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~ 942 (1973)
.+.++||||+||++||+||||++.|++++||++|+++.... ......++|+++..... .+.+++|+++|.|+||++
T Consensus 4 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~l~~Pi~~G~i~d~d~ 82 (378)
T PTZ00004 4 EETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRG-ILTLKYPIEHGIVTNWDD 82 (378)
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccc-cceEcccCcCCEEcCHHH
Confidence 45678999999999999999999999999999999876421 11224689998865433 378999999999999999
Q ss_pred HHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeC
Q psy15183 943 QEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCG 1021 (1973)
Q Consensus 943 le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG 1021 (1973)
++.||+|+| .+|++++. ++||+||||+++++..|++++|+|||+|+||+++++.+++||+|++|+ +||||||+|
T Consensus 83 ~e~i~~~~~~~~l~v~~~---~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--~tglVVDiG 157 (378)
T PTZ00004 83 MEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--TTGIVLDSG 157 (378)
T ss_pred HHHHHHHHHHhhcccCCc---cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC--ceEEEEECC
Confidence 999999998 58999887 899999999999999999999999999999999999999999999999 999999999
Q ss_pred CCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhccccc
Q psy15183 1022 YQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFY 1101 (1973)
Q Consensus 1022 ~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~~~ 1101 (1973)
++.|+|+||+||+++.++++++++||+++++||+++|..++..+........+++||+++|||+.||.+++....
T Consensus 158 ~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~----- 232 (378)
T PTZ00004 158 DGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSA----- 232 (378)
T ss_pred CCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhh-----
Confidence 999999999999999999999999999999999999988866554444567799999999999988655422100
Q ss_pred cccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhhhc
Q psy15183 1102 DSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSM 1181 (1973)
Q Consensus 1102 ~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~ 1181 (1973)
.
T Consensus 233 -----------------------------------------------------------------~-------------- 233 (378)
T PTZ00004 233 -----------------------------------------------------------------G-------------- 233 (378)
T ss_pred -----------------------------------------------------------------c--------------
Confidence 0
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1182 GINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQR 1261 (1973)
Q Consensus 1182 ~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~~~ 1261 (1973)
..
T Consensus 234 -----------------------------~~------------------------------------------------- 235 (378)
T PTZ00004 234 -----------------------------SS------------------------------------------------- 235 (378)
T ss_pred -----------------------------Cc-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCcccccc
Q psy15183 1262 RQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQ 1341 (1973)
Q Consensus 1262 ~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~~~ 1341 (1973)
+ ..
T Consensus 236 -----------------------------~------------------------------------------------~~ 238 (378)
T PTZ00004 236 -----------------------------D------------------------------------------------KY 238 (378)
T ss_pred -----------------------------c------------------------------------------------cc
Confidence 0 00
Q ss_pred ccccCCCCCcEEEecceeeecccccCCCCCcCcc-cccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHH
Q psy15183 1342 EQELSPKEANQLHIGVERMCGPECLFQPSMLGSI-QAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNK 1420 (1973)
Q Consensus 1342 ~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~-~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~ 1420 (1973)
...|.+|||..|.++.|||.+||+||+|+.+|.+ ..||+++|.+||.+||.|+|+.|++||+|+||+|++|||.+||++
T Consensus 239 ~~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~ 318 (378)
T PTZ00004 239 EESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTK 318 (378)
T ss_pred ceEEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHH
Confidence 0124456689999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceeecccC
Q psy15183 1421 DLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 1480 (1973)
Q Consensus 1421 EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk~~ 1480 (1973)
||+.++|...+++|...++|.+++|+||||+|++++|++.||||++|+|+|++++.++|+
T Consensus 319 EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 319 ELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred HHHHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 999999988889999999999999999999999999999999999999999999988764
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=5e-62 Score=608.17 Aligned_cols=373 Identities=24% Similarity=0.426 Sum_probs=320.0
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCC------CCccccceeccccccccccccEEeecccCCcccCHH
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER------GKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYD 941 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~------~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd 941 (1973)
.++||||+||++|||||||++.|++++||+||+++... +.....+++|+++..... .+.+++||++|.|+|||
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~-~~~l~~Pi~~G~I~dwd 82 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASK-SYTLTYPMKHGIVEDWD 82 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcC-CcEEecCccCCEeCCHH
Confidence 45899999999999999999999999999999986632 111224689999877543 38999999999999999
Q ss_pred HHHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhc----------CC
Q psy15183 942 IQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYN----------GW 1010 (1973)
Q Consensus 942 ~le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~----------G~ 1010 (1973)
++|.+|+|+| +.|++++. ++|++||||+++|...|++|+|+|||+|++|+++++.+++||+|++ |+
T Consensus 83 ~~e~l~~~~~~~~L~~~p~---~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~ 159 (414)
T PTZ00280 83 LMEKFWEQCIFKYLRCEPE---EHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGT 159 (414)
T ss_pred HHHHHHHHHHHHhhccCCC---CCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCc
Confidence 9999999998 68999987 8999999999999999999999999999999999999999999999 88
Q ss_pred CCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHH
Q psy15183 1011 EGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYRE 1090 (1973)
Q Consensus 1011 g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~ 1090 (1973)
+||||||+|++.|+|+||+||+++.++++++++||++++++|.++|..++..+........+++|||++|||+.||..
T Consensus 160 --~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~ 237 (414)
T PTZ00280 160 --LTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAK 237 (414)
T ss_pred --eeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHH
Confidence 999999999999999999999999999999999999999999999988866555444567899999999999988765
Q ss_pred HHHhhhccccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCC
Q psy15183 1091 HLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSD 1170 (1973)
Q Consensus 1091 el~~~~~~~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~ 1170 (1973)
++..+.. +.
T Consensus 238 e~~~~~~--------------------------------------------------------------------~~--- 246 (414)
T PTZ00280 238 EFEKYDS--------------------------------------------------------------------DP--- 246 (414)
T ss_pred HHHHhhc--------------------------------------------------------------------Cc---
Confidence 5332100 00
Q ss_pred chhhHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHH
Q psy15183 1171 HSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAY 1250 (1973)
Q Consensus 1171 ~~~~~~~l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~ 1250 (1973)
..
T Consensus 247 ----------------------------------------~~-------------------------------------- 248 (414)
T PTZ00280 247 ----------------------------------------KN-------------------------------------- 248 (414)
T ss_pred ----------------------------------------cc--------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHh
Q psy15183 1251 IIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILR 1330 (1973)
Q Consensus 1251 i~~k~~~r~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~ 1330 (1973)
....|.+|| .
T Consensus 249 --------------------------------------~~~~~~~~d------------~-------------------- 258 (414)
T PTZ00280 249 --------------------------------------HFKKYTAVN------------S-------------------- 258 (414)
T ss_pred --------------------------------------ccceEECCC------------C--------------------
Confidence 001123332 0
Q ss_pred hCCCCccccccccccCCCCCcEEEecceeeecccccCCCCCcCcc-cccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCC
Q psy15183 1331 QHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSI-QAGISETLNFVLNSYPQHIAQSLANNIFVTGSLC 1409 (1973)
Q Consensus 1331 ~~dp~~~~~~~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~-~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S 1409 (1973)
....+..+.|+.|||.+||+||+|+++|.+ ..||+++|.++|.+||+|+|+.|++||+||||+|
T Consensus 259 ---------------~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s 323 (414)
T PTZ00280 259 ---------------VTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGST 323 (414)
T ss_pred ---------------CCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcc
Confidence 001134799999999999999999998766 4599999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhhcCC----------------CCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCc
Q psy15183 1410 QLPGFVERLNKDLLENRP----------------FQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGE 1473 (1973)
Q Consensus 1410 ~ipGf~eRL~~EL~~l~p----------------~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~ 1473 (1973)
+||||.+||++||+.++| ...+++|..++++.+++|+||||||++++|+++||||++|+|+|++
T Consensus 324 ~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~ 403 (414)
T PTZ00280 324 MFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPS 403 (414)
T ss_pred cCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChH
Confidence 999999999999999863 3457889988899999999999999999999999999999999999
Q ss_pred eeecccC
Q psy15183 1474 FFRVHPC 1480 (1973)
Q Consensus 1474 il~rk~~ 1480 (1973)
+++++.+
T Consensus 404 i~~~~~~ 410 (414)
T PTZ00280 404 ICRYNNV 410 (414)
T ss_pred heeeccc
Confidence 9988644
No 9
>KOG0679|consensus
Probab=100.00 E-value=9.3e-61 Score=551.22 Aligned_cols=396 Identities=23% Similarity=0.398 Sum_probs=311.9
Q ss_pred cCCCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCc--cccceeccccccccccccEEeecccCCcccCHH
Q psy15183 864 LRDSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKK--DGETQVGNDISNIEAVRFQLKTQFDKNVVTHYD 941 (1973)
Q Consensus 864 ~~~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~--~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd 941 (1973)
..++.++||||+||++|||||||++.|.++||+++|......+.. ...++++.++...+..++.+..|+++|+|.|||
T Consensus 7 ggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD 86 (426)
T KOG0679|consen 7 GGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWD 86 (426)
T ss_pred cccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhccCCCCCCeeccchhcCCcccHH
Confidence 467889999999999999999999999999999999643332211 123689999988888789999999999999999
Q ss_pred HHHHHHHHHHh-hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEee
Q psy15183 942 IQEQIFDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISC 1020 (1973)
Q Consensus 942 ~le~i~~~if~-~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDi 1020 (1973)
.++.+|+|+|+ +|.++|. +||++||||++|++..|++++|+|||.|+||+++++..++|.+|++|+ .|||||||
T Consensus 87 ~~~~~w~~~~~~~Lk~~p~---ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr--stalVvDi 161 (426)
T KOG0679|consen 87 LFEMQWRYAYKNQLKVNPE---EHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR--STALVVDI 161 (426)
T ss_pred HHHHHHHHHHhhhhhcCcc---ccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC--CceEEEEe
Confidence 99999999995 8999998 899999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhcccc
Q psy15183 1021 GYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEF 1100 (1973)
Q Consensus 1021 G~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~~ 1100 (1973)
|+++|+|+||+||+++.+++++.++||+.|+..++++|..+...... ...|+.+-- |
T Consensus 162 Ga~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P------~y~ia~k~~-v---------------- 218 (426)
T KOG0679|consen 162 GATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIP------MYNIASKEP-V---------------- 218 (426)
T ss_pred cCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCc------HHHhhhccc-c----------------
Confidence 99999999999999999999999999999999999999876321110 111111000 0
Q ss_pred ccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhhh
Q psy15183 1101 YDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKS 1180 (1973)
Q Consensus 1101 ~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~~ 1180 (1973)
....|.+ . .+
T Consensus 219 ------~~g~~an--------------------------~------------------~~-------------------- 228 (426)
T KOG0679|consen 219 ------REGYPAN--------------------------A------------------VL-------------------- 228 (426)
T ss_pred ------cccCcch--------------------------h------------------hh--------------------
Confidence 0000000 0 00
Q ss_pred cCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1181 MGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQ 1260 (1973)
Q Consensus 1181 ~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~~ 1260 (1973)
+...|....++..|.. +. +++
T Consensus 229 ----------------------------------------------~~~~~d~tes~~~y~~-----~~-v~~------- 249 (426)
T KOG0679|consen 229 ----------------------------------------------RVSIPDLTESYHNYME-----QR-VYQ------- 249 (426)
T ss_pred ----------------------------------------------cCChhHHHHHHHHHHH-----HH-HHH-------
Confidence 0000001111111111 00 110
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCcccc-
Q psy15183 1261 RRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSL- 1339 (1973)
Q Consensus 1261 ~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~- 1339 (1973)
....+ ...+. |.+|...
T Consensus 250 ---------------------e~ke~-----v~qv~------------------------------------dtp~de~~ 267 (426)
T KOG0679|consen 250 ---------------------EFKES-----VLQVS------------------------------------DTPFDEEV 267 (426)
T ss_pred ---------------------HHHHH-----HHhcc------------------------------------CCCCcccc
Confidence 00000 00000 1111111
Q ss_pred ---ccccccCCCCCcEEEecceeeecccccCCCCCcC------------cccccHHHHHHHHHhcCCHHHHHHhhcCEEE
Q psy15183 1340 ---NQEQELSPKEANQLHIGVERMCGPECLFQPSMLG------------SIQAGISETLNFVLNSYPQHIAQSLANNIFV 1404 (1973)
Q Consensus 1340 ---~~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig------------~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvL 1404 (1973)
..+..|+.|+|+...+|.|||++||.||.|+.+. ....|+++++..||..||.|+|..|++||||
T Consensus 268 ~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nViv 347 (426)
T KOG0679|consen 268 AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIV 347 (426)
T ss_pred cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhccEEE
Confidence 3345689999999999999999999999998653 2236999999999999999999999999999
Q ss_pred ECCCCCcccHHHHHHHHHhhcCCCCCceEEEecC---CCcccceeccccccccccccccceeHHHHhhcCC-ceeeccc
Q psy15183 1405 TGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAE---NPELDAWSGARQFSLSENFHDFAVTQSDYQEKGG-EFFRVHP 1479 (1973)
Q Consensus 1405 TGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~---dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~-~il~rk~ 1479 (1973)
|||+|+|+||.+||.+||..+.|.. ++++.++. +|+|++|+||||||++.+|+++||+|+||+|.|. +.+.++|
T Consensus 348 tGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 348 TGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred ecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 9999999999999999999999977 99999988 8999999999999999999999999999999999 5555555
No 10
>KOG0677|consensus
Probab=100.00 E-value=5.2e-61 Score=524.89 Aligned_cols=364 Identities=24% Similarity=0.411 Sum_probs=321.3
Q ss_pred CCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCC-----ccccceeccccccccccccEEeecccCCcccCHH
Q psy15183 867 SSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGK-----KDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYD 941 (1973)
Q Consensus 867 ~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~-----~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd 941 (1973)
+..+||.|+|+..+|+||||+..|.++||+.||||.-.... .-.++.||+++..++.. +.+.+|+++|+|.||+
T Consensus 3 ~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~-L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 3 SRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSL-LDINYPMENGIVRNWD 81 (389)
T ss_pred CCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHH-HhcCCccccccccChH
Confidence 36789999999999999999999999999999998644311 11267899999887765 8899999999999999
Q ss_pred HHHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEee
Q psy15183 942 IQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISC 1020 (1973)
Q Consensus 942 ~le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDi 1020 (1973)
+|+++|+|.| ++|.++|. +..+++|||++||...|++|+|+|||+|||.++|++.++++++|+.|. .||+|||.
T Consensus 82 dM~h~WDytF~ekl~idp~---~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL--~tGvVvDS 156 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPT---NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGL--LTGVVVDS 156 (389)
T ss_pred HHHHHHHhhhhhhccCCCc---cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcc--cceEEEec
Confidence 9999999999 68999998 789999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhcccc
Q psy15183 1021 GYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEF 1100 (1973)
Q Consensus 1021 G~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~~ 1100 (1973)
|.+.|||+||++|+++++-.+|++++|+++|.||.++|..++..+....+.+.+..|||+.||++.|+..+-+
T Consensus 157 GDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~k------- 229 (389)
T KOG0677|consen 157 GDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQK------- 229 (389)
T ss_pred CCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhH-------
Confidence 9999999999999999999999999999999999999999988888889999999999999999977543310
Q ss_pred ccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhhh
Q psy15183 1101 YDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKS 1180 (1973)
Q Consensus 1101 ~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~~ 1180 (1973)
| .++ .+
T Consensus 230 ----------------------------------L-----------------------alE----TT------------- 235 (389)
T KOG0677|consen 230 ----------------------------------L-----------------------ALE----TT------------- 235 (389)
T ss_pred ----------------------------------h-----------------------hhh----he-------------
Confidence 0 000 00
Q ss_pred cCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1181 MGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQ 1260 (1973)
Q Consensus 1181 ~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~~ 1260 (1973)
-+
T Consensus 236 ---------------------------------------------------------------------vL--------- 237 (389)
T KOG0677|consen 236 ---------------------------------------------------------------------VL--------- 237 (389)
T ss_pred ---------------------------------------------------------------------ee---------
Confidence 00
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCccccc
Q psy15183 1261 RRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLN 1340 (1973)
Q Consensus 1261 ~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~~ 1340 (1973)
-
T Consensus 238 -----------------------------v-------------------------------------------------- 238 (389)
T KOG0677|consen 238 -----------------------------V-------------------------------------------------- 238 (389)
T ss_pred -----------------------------e--------------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHH
Q psy15183 1341 QEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNK 1420 (1973)
Q Consensus 1341 ~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~ 1420 (1973)
..|++|||..|.+|.|||.+||+||+|.++..+..|++|++.++|+..++|.|..++.+|+|+||+++-||+..||++
T Consensus 239 --~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEk 316 (389)
T KOG0677|consen 239 --ESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEK 316 (389)
T ss_pred --eeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHH
Confidence 125667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-----CC------CCceEEEecCCCcccceecccccccc-ccccccceeHHHHhhcCCceee
Q psy15183 1421 DLLENR-----PF------QSHFSVSLAENPELDAWSGARQFSLS-ENFHDFAVTQSDYQEKGGEFFR 1476 (1973)
Q Consensus 1421 EL~~l~-----p~------~~~i~V~~~~dp~~~aW~GaSilasl-~sf~~~~ITreeY~E~G~~il~ 1476 (1973)
||.++. .. ..+++|-.+|.+.+.+|+||+++|.. ..-..+|+||++|+|.|...+.
T Consensus 317 Elkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~ 384 (389)
T KOG0677|consen 317 ELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLN 384 (389)
T ss_pred HHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHH
Confidence 999863 11 13566777778889999999999976 4455899999999999987654
No 11
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=5.8e-60 Score=586.48 Aligned_cols=366 Identities=28% Similarity=0.510 Sum_probs=303.9
Q ss_pred CCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHH
Q psy15183 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQ 945 (1973)
Q Consensus 866 ~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~ 945 (1973)
++.++||||+||++|||||||++.|+.++||++++++...... .+++|++... ....+.+++|+++|.|.||+.++.
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~--~~~~g~~~~~-~~~~~~~~~p~~~g~i~~~~~~e~ 78 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSN--DYYVGDEALS-PRSNLELRSPIENGVIVDWDALEE 78 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSS--SCEETHHHHH-TGTGEEEEESEETTEESSHHHHHH
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccce--eEEeeccccc-chhheeeeeecccccccccccccc
Confidence 5678999999999999999999999999999999987765322 4589988554 344489999999999999999999
Q ss_pred HHHHHHh-hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCCCc
Q psy15183 946 IFDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQC 1024 (1973)
Q Consensus 946 i~~~if~-~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~s~ 1024 (1973)
+|+|+|. .|++++. ++||||++|+++++..|+.|+|+|||+|+||+|+++.+++||+|++|. +||||||+|++.
T Consensus 79 i~~~~~~~~l~~~~~---~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~--~tglVVD~G~~~ 153 (393)
T PF00022_consen 79 IWDYIFSNLLKVDPS---DHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGR--TTGLVVDIGYSS 153 (393)
T ss_dssp HHHHHHHTTT-SSGG---GSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTB--SSEEEEEESSS-
T ss_pred ccccccccccccccc---cceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccccccc--ccccccccceee
Confidence 9999996 5888887 899999999999999999999999999999999999999999999999 999999999999
Q ss_pred eEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCC-----------------CCHHHHHHHHHHheecccc
Q psy15183 1025 THVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINS-----------------ITPSRSEELLWDYGFVATD 1087 (1973)
Q Consensus 1025 T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~-----------------~~~~~~e~iKe~~c~va~d 1087 (1973)
|+|+||+||+++.++++++++||++++.+|+++|..++...... .....++++|+++|+|+.+
T Consensus 154 t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~ 233 (393)
T PF00022_consen 154 TSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSED 233 (393)
T ss_dssp EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSS
T ss_pred eeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccc
Confidence 99999999999999999999999999999999999863322111 1122345555555555433
Q ss_pred HHHHHHhhhccccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcC
Q psy15183 1088 YREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELT 1167 (1973)
Q Consensus 1088 y~~el~~~~~~~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~ 1167 (1973)
+...-..
T Consensus 234 ~~~~~~~------------------------------------------------------------------------- 240 (393)
T PF00022_consen 234 PDEEQEE------------------------------------------------------------------------- 240 (393)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 2110000
Q ss_pred CCCchhhHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHH
Q psy15183 1168 PSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKK 1247 (1973)
Q Consensus 1168 ~~~~~~~~~~l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~ 1247 (1973)
T Consensus 241 -------------------------------------------------------------------------------- 240 (393)
T PF00022_consen 241 -------------------------------------------------------------------------------- 240 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHH
Q psy15183 1248 RAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEE 1327 (1973)
Q Consensus 1248 r~~i~~k~~~r~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~ 1327 (1973)
. + .
T Consensus 241 ---~----------------~---------------------~------------------------------------- 243 (393)
T PF00022_consen 241 ---Q----------------A---------------------S------------------------------------- 243 (393)
T ss_dssp ---H----------------H---------------------C-------------------------------------
T ss_pred ---c----------------c---------------------c-------------------------------------
Confidence 0 0 0
Q ss_pred HHhhCCCCccccccccccCCCCCcEEEecceeeecccccCCCCCcCcccc-------cHHHHHHHHHhcCCHHHHHHhhc
Q psy15183 1328 ILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQA-------GISETLNFVLNSYPQHIAQSLAN 1400 (1973)
Q Consensus 1328 ~l~~~dp~~~~~~~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~-------gL~e~I~~sI~~~~~d~r~~L~~ 1400 (1973)
......|.+|||+.+.++.+|+.+||+||+|+.+|.+.. ||+++|.+||.+||.|.|+.|++
T Consensus 244 -----------~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~ 312 (393)
T PF00022_consen 244 -----------ENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLS 312 (393)
T ss_dssp -----------STTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHT
T ss_pred -----------cccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccccccc
Confidence 001122456668999999999999999999999999877 99999999999999999999999
Q ss_pred CEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecC-CCcccceeccccccccccccccceeHHHHhhcCCceeeccc
Q psy15183 1401 NIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAE-NPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHP 1479 (1973)
Q Consensus 1401 NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~-dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk~ 1479 (1973)
||+||||+|+||||.+||++||+.+.|...+++|...+ +|.+++|+||||+|++++|+++||||++|+|+|++++++||
T Consensus 313 nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc 392 (393)
T PF00022_consen 313 NIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKC 392 (393)
T ss_dssp TEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT
T ss_pred ceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecC
Confidence 99999999999999999999999999988999999999 99999999999999999999999999999999999999987
Q ss_pred C
Q psy15183 1480 C 1480 (1973)
Q Consensus 1480 ~ 1480 (1973)
.
T Consensus 393 ~ 393 (393)
T PF00022_consen 393 F 393 (393)
T ss_dssp -
T ss_pred C
Confidence 4
No 12
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=3.2e-58 Score=567.39 Aligned_cols=369 Identities=27% Similarity=0.508 Sum_probs=323.1
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCC--ccccceeccccccccccccEEeecccCCcccCHHHHHHH
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGK--KDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQI 946 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~--~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i 946 (1973)
++||||+||++||+||+|++.|++++||+|++++..... ....+++|+++...... ..+++|+++|.|.||++++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGG-LELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCCC-ceecCCCcCCEEeCHHHHHHH
Confidence 589999999999999999999999999999998654321 11246899998654433 589999999999999999999
Q ss_pred HHHHHh-hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCCCce
Q psy15183 947 FDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCT 1025 (1973)
Q Consensus 947 ~~~if~-~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~s~T 1025 (1973)
|+|+|. .|++++. ++||+|++|.+++...|+.++++|||.|++|+++++.++++|+|++|. ++|||||+|++.|
T Consensus 81 ~~~~~~~~l~~~~~---~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~--~~~lVVDiG~~~t 155 (373)
T smart00268 81 WDYTFFNELRVEPE---EHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGR--TTGLVIDSGDGVT 155 (373)
T ss_pred HHHHHhhhcCCCCc---cCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCC--CEEEEEecCCCcc
Confidence 999996 7888886 899999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhccccccccc
Q psy15183 1026 HVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFYDSNV 1105 (1973)
Q Consensus 1026 ~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~~~~~~~ 1105 (1973)
+|+||+||+++.++++++++||++++++|.++|+.+...+........++++|+++|||+.++..++.....
T Consensus 156 ~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~-------- 227 (373)
T smart00268 156 HVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARE-------- 227 (373)
T ss_pred eEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhh--------
Confidence 999999999999999999999999999999999885333333445678999999999998765443211000
Q ss_pred eecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhhhcCCcc
Q psy15183 1106 VKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGINN 1185 (1973)
Q Consensus 1106 ~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 1185 (1973)
+.
T Consensus 228 ------------------------------------------------------------~~------------------ 229 (373)
T smart00268 228 ------------------------------------------------------------SS------------------ 229 (373)
T ss_pred ------------------------------------------------------------cc------------------
Confidence 00
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1186 IQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDL 1265 (1973)
Q Consensus 1186 ~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~~~~~~~ 1265 (1973)
.
T Consensus 230 --------------------------~----------------------------------------------------- 230 (373)
T smart00268 230 --------------------------E----------------------------------------------------- 230 (373)
T ss_pred --------------------------c-----------------------------------------------------
Confidence 0
Q ss_pred HHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCcccccccccc
Q psy15183 1266 AKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQEL 1345 (1973)
Q Consensus 1266 ~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~~~~~~~ 1345 (1973)
.. .....|
T Consensus 231 ------------------------~~------------------------------------------------~~~~~~ 238 (373)
T smart00268 231 ------------------------SS------------------------------------------------KLEKTY 238 (373)
T ss_pred ------------------------cc------------------------------------------------ccceeE
Confidence 00 000124
Q ss_pred CCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHHhhc
Q psy15183 1346 SPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLEN 1425 (1973)
Q Consensus 1346 ~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l 1425 (1973)
.+|+|..+.++.||+.+||+||+|+.+|.+..||+++|.++|.+||+|+|+.|++||+||||+|++|||.+||++||+.+
T Consensus 239 ~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~ 318 (373)
T smart00268 239 ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQL 318 (373)
T ss_pred ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHh
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceeecccC
Q psy15183 1426 RPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 1480 (1973)
Q Consensus 1426 ~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk~~ 1480 (1973)
.|...++++...++|.+++|+|||++|++++|+..||||++|+|+|+++++++|+
T Consensus 319 ~p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 319 APKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCCCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 9988889999999999999999999999999999999999999999999999874
No 13
>KOG0680|consensus
Probab=100.00 E-value=9.4e-59 Score=522.10 Aligned_cols=386 Identities=27% Similarity=0.448 Sum_probs=324.0
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccc-cEEeecccCCcccCHHHHHHH
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVR-FQLKTQFDKNVVTHYDIQEQI 946 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~-~~l~~Pi~~G~V~dwd~le~i 946 (1973)
.++||+|||+|++|+|+++...|. ++|||+.+.+..+. ..|+|+++.++.+.. +.+++|+++|.++||+.+.++
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~r----r~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~v 77 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGRR----RSFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQV 77 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCce-eccchhhhcccccc----hhhhhhhhhhccCccceEEeehhhcceeEeehhHHHH
Confidence 568999999999999999999995 77999999876652 249999999887754 999999999999999999999
Q ss_pred HHHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhh-cCCC--------CceEEE
Q psy15183 947 FDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQY-NGWE--------GQSGVI 1017 (1973)
Q Consensus 947 ~~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya-~G~g--------~~tgLV 1017 (1973)
|+|+|...+++.+ ..++.+++|||.++-+...+.+.|+|||.|+|.+++=...+.|+.+- +-++ +.+++|
T Consensus 78 WDy~f~~~~~~~~-~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lV 156 (400)
T KOG0680|consen 78 WDYCFGNPGFDVE-GKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLV 156 (400)
T ss_pred HHHHhcCCCcCcc-cCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEE
Confidence 9999987775543 45999999999999999999999999999999999999999998876 2221 348999
Q ss_pred EeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhc
Q psy15183 1018 ISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLD 1097 (1973)
Q Consensus 1018 VDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~ 1097 (1973)
||+||+.|||+||++|.+..++++|+++||+.||++|+++++.++.+ .+.....+++|||.+|||++||.+.+..+..
T Consensus 157 IDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lN--vmdET~vVNeiKEdvcfVSqnF~~~m~~~~~ 234 (400)
T KOG0680|consen 157 IDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLN--VMDETYVVNEIKEDVCFVSQNFKEDMDIAKT 234 (400)
T ss_pred EeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhc--ccchhhhhhhhhhheEEechhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998533 2344567999999999999999887654221
Q ss_pred cccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHH
Q psy15183 1098 AEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREA 1177 (1973)
Q Consensus 1098 ~~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~ 1177 (1973)
. .+++
T Consensus 235 k--~~~~------------------------------------------------------------------------- 239 (400)
T KOG0680|consen 235 K--FQEN------------------------------------------------------------------------- 239 (400)
T ss_pred c--cccc-------------------------------------------------------------------------
Confidence 0 0000
Q ss_pred hhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1178 FKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNA 1257 (1973)
Q Consensus 1178 l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~ 1257 (1973)
|
T Consensus 240 ---------------------------------------------~---------------------------------- 240 (400)
T KOG0680|consen 240 ---------------------------------------------K---------------------------------- 240 (400)
T ss_pred ---------------------------------------------e----------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCcc
Q psy15183 1258 RKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFT 1337 (1973)
Q Consensus 1258 r~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~ 1337 (1973)
...+|.||| |..+ +-| |.
T Consensus 241 -------------------------------~~i~YvLPD-----F~T~-k~G-------------------------yv 258 (400)
T KOG0680|consen 241 -------------------------------VMIDYVLPD-----FSTS-KRG-------------------------YV 258 (400)
T ss_pred -------------------------------eEEEEecCC-----cccc-cce-------------------------eE
Confidence 011223332 0000 000 00
Q ss_pred ccccccccCCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHH
Q psy15183 1338 SLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVER 1417 (1973)
Q Consensus 1338 ~~~~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eR 1417 (1973)
.. ..--...|.+.|+|++|||.+||+||+|+++|+.++||+|+|.+||+.||.++|+.|+.||+++||+|++|||.+|
T Consensus 259 r~--~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~R 336 (400)
T KOG0680|consen 259 RN--EDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQR 336 (400)
T ss_pred ec--CCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHH
Confidence 00 0000112347899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceeeccc
Q psy15183 1418 LNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHP 1479 (1973)
Q Consensus 1418 L~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk~ 1479 (1973)
|..||++++|.++.++|..+.||..-+|.||+-++..+.|...||||+||+|+|++++.+++
T Consensus 337 L~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~ 398 (400)
T KOG0680|consen 337 LARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKR 398 (400)
T ss_pred HHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999977764
No 14
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.5e-56 Score=552.17 Aligned_cols=365 Identities=28% Similarity=0.487 Sum_probs=321.7
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC---CccccceeccccccccccccEEeecccCCcccCHHHHHHH
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQI 946 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~---~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i 946 (1973)
+||||+||+++|+||+|++.|++++||++|+++.... .....+++|+++.......+.+++|+++|.|.||++++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 5999999999999999999999999999999875531 1123579999987766556899999999999999999999
Q ss_pred HHHHHh-hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCCCce
Q psy15183 947 FDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCT 1025 (1973)
Q Consensus 947 ~~~if~-~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~s~T 1025 (1973)
|+|+|. .|..++. ++||+|++|.+++...|+.++++|||.|++|+|+++.++++|+|++|. ++|||||+|++.|
T Consensus 81 ~~~~~~~~l~~~~~---~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~--~~~lVVDiG~~~t 155 (371)
T cd00012 81 WDHLFFNELKVNPE---EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR--TTGLVVDSGDGVT 155 (371)
T ss_pred HHHHHHHhcCCCCC---CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC--CeEEEEECCCCee
Confidence 999995 5777765 799999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhccccccccc
Q psy15183 1026 HVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFYDSNV 1105 (1973)
Q Consensus 1026 ~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~~~~~~~ 1105 (1973)
+|+||+||+++.++++++++||++++++|.++|+.+++.+........++++|+++|||+.++..++....
T Consensus 156 ~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~--------- 226 (371)
T cd00012 156 HVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSA--------- 226 (371)
T ss_pred EEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhh---------
Confidence 99999999999999999999999999999999998876555566778899999999999866543211000
Q ss_pred eecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhhhcCCcc
Q psy15183 1106 VKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGINN 1185 (1973)
Q Consensus 1106 ~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 1185 (1973)
..
T Consensus 227 ------------------------------------------------------------~~------------------ 228 (371)
T cd00012 227 ------------------------------------------------------------KE------------------ 228 (371)
T ss_pred ------------------------------------------------------------cc------------------
Confidence 00
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1186 IQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDL 1265 (1973)
Q Consensus 1186 ~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~~~~~~~ 1265 (1973)
..
T Consensus 229 -------------------------~~----------------------------------------------------- 230 (371)
T cd00012 229 -------------------------TS----------------------------------------------------- 230 (371)
T ss_pred -------------------------CC-----------------------------------------------------
Confidence 00
Q ss_pred HHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCcccccccccc
Q psy15183 1266 AKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQEL 1345 (1973)
Q Consensus 1266 ~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~~~~~~~ 1345 (1973)
..... +
T Consensus 231 ----------------------~~~~~----------------------------------------------------~ 236 (371)
T cd00012 231 ----------------------LLEKT----------------------------------------------------Y 236 (371)
T ss_pred ----------------------cccee----------------------------------------------------E
Confidence 00112 3
Q ss_pred CCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHHhhc
Q psy15183 1346 SPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLEN 1425 (1973)
Q Consensus 1346 ~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l 1425 (1973)
.+|++..+.++.|||.+||+||+|+.+|....||+++|..+|..||.+.|+.+++||+||||+|++|||.+||++||..+
T Consensus 237 ~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~ 316 (371)
T cd00012 237 ELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKL 316 (371)
T ss_pred ECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHh
Confidence 44558899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceeecc
Q psy15183 1426 RPF--QSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVH 1478 (1973)
Q Consensus 1426 ~p~--~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk 1478 (1973)
.|. ...+++....+|.+++|+|||++|++++|++.||||+||+|.|+.++++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 317 APPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred CCcccceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 987 55678888889999999999999999999999999999999999998774
No 15
>KOG2206|consensus
Probab=100.00 E-value=5.2e-58 Score=547.63 Aligned_cols=391 Identities=38% Similarity=0.649 Sum_probs=348.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhhcCCCCCCcchhhhcChhHHhhhhhhhhHHHHHHHHHHhhccccCCCC--ccccccccc
Q psy15183 1536 SKTLDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMS--KLYLEGQKD 1613 (1973)
Q Consensus 1536 s~t~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~ 1613 (1973)
+-..|.|++.+.++++.+|+. ++++|++||+|.. |+.+++|+..+|+.++.+.|+..+.. +.++++.+|
T Consensus 3 s~~~ds~~k~~~~s~~~~t~~--------D~~fY~sf~~F~~-~~~~~~rl~~~mn~v~~s~~~~~~~~d~~~~~~~~~d 73 (687)
T KOG2206|consen 3 SENPDSLVKRVINSVRAATSL--------DYDFYYSFPGFSK-LKSKADRLADMMNEVILSIGCHSESFDRPEDIEDLWD 73 (687)
T ss_pred cccHHHHHHHHhhccccceec--------cceeeccCchhhh-cchhHHHHHHHHHHHHHhhhccccccCCchhHHHHHH
Confidence 345788999999999888877 7999999999999 99999999999999999999877754 357889999
Q ss_pred hhhhhhhhHhhhcChhhhhccCCCCCCCCCCCccccccccccccccccchhhhcccccccccccccccCccccCCccccc
Q psy15183 1614 ILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQF 1693 (1973)
Q Consensus 1614 ~~~~~~d~~le~~~~~ld~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~f 1693 (1973)
+|+++||.|+||+|++|||+.|+++.....+ + ++|++..++ |.+++ ..||.|||+.|
T Consensus 74 ~l~~~~D~i~Er~d~~lDe~k~~~k~e~~~~-~----s~~~r~fsG----------Ka~sp--------~~~l~kpq~~f 130 (687)
T KOG2206|consen 74 NLGNANDNILERFDHLLDELKRARKSESRGS-P----SEYDREFSG----------KAKSP--------TMNLLKPQVRF 130 (687)
T ss_pred HHHhhhhHHHHHhcchHHHHHhhhhccccCC-h----hhhhhhccc----------cccCc--------cccccchHHHH
Confidence 9999999999999999999999987432111 1 457765331 22222 35899999999
Q ss_pred cccCCCCCCCCCcccccCCCCCCChhhHhhhhc-ccccccCCcchhhhccCCCCccccccCCCCCCCCCCCCCeEEeCCH
Q psy15183 1694 KVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY-DAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEP 1772 (1973)
Q Consensus 1694 ~~~~dn~~~~~~~p~~~~k~~~~~~~~~~~~~~-~~~~~~~hpy~~ei~~~~~~~~~~~~~~p~~~~~~~~~~~~~Idt~ 1772 (1973)
+..|||++ .||.|.+.+ ..+.. +....+.|||+||+.+|.+...+++..+|..+.++..|++.+|++.
T Consensus 131 ~~~idn~~-~pf~~~~~~----------~vEr~e~~~~~~~hpye~e~~~f~~~~~~le~~~~~~~~~le~T~~~~I~t~ 199 (687)
T KOG2206|consen 131 VEGIDNLH-HPFCSMLAS----------EVERLEDRPREVQHPYEDEERHFRQIDKQLEEGEPRKSSPLEITPKVWICTL 199 (687)
T ss_pred hhcccccc-CCchhhhhh----------hhhchhhcchhccCcchhhhhhhcccchhhhcccccCCCcccccCceeeech
Confidence 99999995 699998864 22222 3345689999999999998888888999999999999999999999
Q ss_pred HHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHH
Q psy15183 1773 EQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 1852 (1973)
Q Consensus 1773 e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~ 1852 (1973)
.++.++.+.|....++|+|+|||++++|.|.+|+|||+|++.+|+||++.+++.++.|+++|+||+|+||+||+..|+.|
T Consensus 200 ~el~~l~~~l~~~~Efavdlehhsyrsf~gltclmqISTr~ed~iIDt~~l~~~i~~l~e~fsdp~ivkvfhgaD~diiw 279 (687)
T KOG2206|consen 200 GELEALPEILDSVIEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTFKLRDHIGILNEVFSDPGIVKVFHGADTDIIW 279 (687)
T ss_pred HHHHHHHHHHhhhhhhhhhccccchhhhcCceeEEEeeccchhheehhHHHHHHHHHhhhhccCCCeEEEEecCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1853 LQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1853 Lqr~~GI~l~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
|||+||||++|+|||..|+++|+.+.++|++|++.|||+..+|.+|++|||.|||+.+|+.||+.|+||+++||+.|+.+
T Consensus 280 lqrdfgiyvvnLfdt~~a~r~L~~~r~sL~~ll~~~~~v~~nk~yqladwR~rpLp~~Mv~yar~dthyllyiyD~lr~e 359 (687)
T KOG2206|consen 280 LQRDFGIYVVNLFDTIQASRLLGLPRPSLAYLLECVCGVLTNKKYQLADWRIRPLPEEMVRYAREDTHYLLYIYDVLRKE 359 (687)
T ss_pred hhccceEEEEechhhHHHHHHhCCCcccHHHHHHHHHhhhhhhhhhhchhccccCcHHHHHHHhhcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcHHHHHHHHHHHHHHHhhhcCCCCCCcccccccC
Q psy15183 1933 LSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIF 1973 (1973)
Q Consensus 1933 L~e~~~g~~~Ll~~V~~~s~~~~~~~y~k~~~~~~~~~~~~ 1973 (1973)
|...+.|... ++.+|+++|.+.|.||.|++++|+++|
T Consensus 360 l~~~a~~~~~----~~~~~~d~c~~~~~k~~~~~~sy~~v~ 396 (687)
T KOG2206|consen 360 LKRLAKGRAV----TYSESRDMCTNGYKKKTFCTKSYLEVE 396 (687)
T ss_pred HHHHhccccc----ccchhhhhhhcceecccCCCcchHhHH
Confidence 9877544433 345999999999999999999999875
No 16
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.2e-55 Score=542.70 Aligned_cols=383 Identities=30% Similarity=0.532 Sum_probs=314.4
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEEEecceeecc-CCC---CCccccceecccccccccc-ccEEeecccCCcccCHHH
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPR-KER---GKKDGETQVGNDISNIEAV-RFQLKTQFDKNVVTHYDI 942 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~-~~~---~~~~~~~~vGdea~~~~~~-~~~l~~Pi~~G~V~dwd~ 942 (1973)
.++||||+||++||+||||++.|+++|||++++.+ ... .....+.++|+++....+. .+.+++|+++|.|.||++
T Consensus 6 ~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~ 85 (444)
T COG5277 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDA 85 (444)
T ss_pred CCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHH
Confidence 34499999999999999999999999999999996 111 1112356999998777665 599999999999999999
Q ss_pred HHHHHHHHHhh---cCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCc--eEEE
Q psy15183 943 QEQIFDYAFSH---LSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQ--SGVI 1017 (1973)
Q Consensus 943 le~i~~~if~~---L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~--tgLV 1017 (1973)
++.+|+|+|.. +...+. +||+++|||..++...|+.++|++||+|+||+++++.+++|++|++|. . +|||
T Consensus 86 ~e~~w~~~~~~~~~~~~~~~---~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~--~~~~g~V 160 (444)
T COG5277 86 MEQIWDYTFFNKGDLLPSPE---EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGS--SDETGLV 160 (444)
T ss_pred HHHHHHHhhcchhhccCCCc---CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCC--CCCceEE
Confidence 99999999954 566666 899999999999999999999999999999999999999999999999 8 9999
Q ss_pred EeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCC-----CCCCC---CCHHHHHHHHHHhe-------
Q psy15183 1018 ISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYP-----SHINS---ITPSRSEELLWDYG------- 1082 (1973)
Q Consensus 1018 VDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~-----~~~~~---~~~~~~e~iKe~~c------- 1082 (1973)
||+|++.|||+||+||.++.++++|+++||++++.+|.++|..+++ .+... -..+.++.+|+++|
T Consensus 161 iD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~ 240 (444)
T COG5277 161 IDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESA 240 (444)
T ss_pred EEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhcccccccc
Confidence 9999999999999999999999999999999999999999999643 11111 22455666666666
Q ss_pred eccccHHHHHHhhhccccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q psy15183 1083 FVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELRE 1162 (1973)
Q Consensus 1083 ~va~dy~~el~~~~~~~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~ 1162 (1973)
|+..+..+....+.. ...
T Consensus 241 y~~~~~~~~~~e~~~---------------------------------~~~----------------------------- 258 (444)
T COG5277 241 YVSLDAEEEFEEEEE---------------------------------KPA----------------------------- 258 (444)
T ss_pred chhhcchHHHHHHhh---------------------------------hhh-----------------------------
Confidence 333222221110000 000
Q ss_pred HhhcCCCCchhhHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHH
Q psy15183 1163 IVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLI 1242 (1973)
Q Consensus 1163 ~~~~~~~~~~~~~~~l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~ 1242 (1973)
++..
T Consensus 259 -----------------------------------------------------------~~~~----------------- 262 (444)
T COG5277 259 -----------------------------------------------------------EKST----------------- 262 (444)
T ss_pred -----------------------------------------------------------hhcc-----------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHH
Q psy15183 1243 ETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERL 1322 (1973)
Q Consensus 1243 ~~r~~r~~i~~k~~~r~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l 1322 (1973)
...+
T Consensus 263 -----------------------------------------------~~~~----------------------------- 266 (444)
T COG5277 263 -----------------------------------------------ESTF----------------------------- 266 (444)
T ss_pred -----------------------------------------------cccc-----------------------------
Confidence 0000
Q ss_pred HHHHHHHhhCCCCccccccccccCCCCCcEEEecce-eeecccccCCCC--CcCccccc---------------------
Q psy15183 1323 IELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVE-RMCGPECLFQPS--MLGSIQAG--------------------- 1378 (1973)
Q Consensus 1323 ~~le~~l~~~dp~~~~~~~~~~~~~~dg~~i~l~~E-R~~~pEiLF~Ps--~ig~~~~g--------------------- 1378 (1973)
+++-........+..|++..+.++.| ||.+||.+|+|. ..+++..|
T Consensus 267 ----------~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
T COG5277 267 ----------QLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNL 336 (444)
T ss_pred ----------cccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccc
Confidence 00000001112245667899999999 999999999999 88877777
Q ss_pred ------HHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceecccccc
Q psy15183 1379 ------ISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 1452 (1973)
Q Consensus 1379 ------L~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSila 1452 (1973)
|++++.++|..|+.+.|+.|++||+||||+|++|||.+||++||+.+.|....+.|..+++|.+.+|+||||||
T Consensus 337 ~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila 416 (444)
T COG5277 337 GNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILA 416 (444)
T ss_pred cccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhc
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred ccccccccceeHHHHhhcCCceeeccc
Q psy15183 1453 LSENFHDFAVTQSDYQEKGGEFFRVHP 1479 (1973)
Q Consensus 1453 sl~sf~~~~ITreeY~E~G~~il~rk~ 1479 (1973)
+++.|+.+||||+||+++|+.++++++
T Consensus 417 ~~~~~~~~~itk~eY~e~G~~~~~~~~ 443 (444)
T COG5277 417 SLETFQQLWITKEEYEEHGPDILQEKR 443 (444)
T ss_pred cccchhheEeeHHHhhhhhhHHHhhcc
Confidence 999999999999999999999988765
No 17
>PRK10829 ribonuclease D; Provisional
Probab=100.00 E-value=1e-47 Score=466.08 Aligned_cols=286 Identities=24% Similarity=0.374 Sum_probs=265.0
Q ss_pred CcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeec
Q psy15183 320 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 399 (1973)
Q Consensus 320 ~~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H 399 (1973)
.|.+|+|+++|.++++.+..++.+||||||++.++|++.+|||||++++++|+||++++. ++.+|+++|+|++|+||+|
T Consensus 2 ~~~~I~t~~~L~~~~~~l~~~~~lalDtEf~~~~ty~~~l~LiQl~~~~~~~LiD~l~~~-d~~~L~~ll~~~~ivKV~H 80 (373)
T PRK10829 2 NYQMITTDDALASVCEAARAFPAIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLGIT-DWSPFKALLRDPQVTKFLH 80 (373)
T ss_pred CcEEeCCHHHHHHHHHHHhcCCeEEEecccccCccCCCceeEEEEecCCceEEEecCCcc-chHHHHHHHcCCCeEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999884 6899999999999999999
Q ss_pred chhHhHHHHHHHhCCcccceeehhhhhhhcCCC-CccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHH
Q psy15183 400 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 478 (1973)
Q Consensus 400 ~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~-~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll 478 (1973)
++++|+.+|++.+|+.+.++|||++|+++||.+ ++||+.|+++|||++++|.+|++||+.||||++|+.|||.||+||+
T Consensus 81 ~~~~Dl~~l~~~~g~~p~~~fDTqiaa~~lg~~~~~gl~~Lv~~~lgv~ldK~~~~sDW~~RPLs~~ql~YAa~Dv~~L~ 160 (373)
T PRK10829 81 AGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPLSCGFASMVEEYTGVTLDKSESRTDWLARPLSERQCEYAAADVFYLL 160 (373)
T ss_pred ChHhHHHHHHHHcCCCcCCeeeHHHHHHHcCCCccccHHHHHHHHhCCccCcccccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15183 479 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 558 (1973)
Q Consensus 479 ~L~d~L~~~L~e~g~~~~~~l~~v~~e~e~~~~~~y~~~~~~~~~~~~~~~k~~~l~~~ql~~l~~L~~WRd~~Ar~~D~ 558 (1973)
.||+.|.++|.+.| ++.|+.++++.++..... +..+.+.|.++.+ ...|+++|++++++|++|||++||++|+
T Consensus 161 ~l~~~L~~~L~~~g-----~~~w~~ee~~~l~~~~~~-~~~~~~~~~~ik~-~~~L~~~~lavl~~L~~WRe~~Ar~~d~ 233 (373)
T PRK10829 161 PIAAKLMAETEAAG-----WLPAALDECRLLCQRRQE-VLAPEEAYRDITN-AWQLRTRQLACLQLLADWRLRKARERDL 233 (373)
T ss_pred HHHHHHHHHHHHcC-----cHHHHHHHHHHHHhcccc-CCChHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999988 478899999888765432 1223466877732 1378999999999999999999999999
Q ss_pred CCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHhcCCC
Q psy15183 559 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 614 (1973)
Q Consensus 559 s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~~~~~ 614 (1973)
|++|||+|+.|++||+++|++.++|.++ +..++.+|+|+++|+++|++|++.|..
T Consensus 234 p~~~Vl~d~~L~~lA~~~P~~~~~L~~~-~~~~~~~r~~g~~ll~~i~~a~~~~~~ 288 (373)
T PRK10829 234 AVNFVVREEHLWQVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVAKAQALPEE 288 (373)
T ss_pred CcceecChHHHHHHHHhCCCCHHHHHhc-cCChHhHHhhHHHHHHHHHHHhcCCHh
Confidence 9999999999999999999999999998 888899999999999999999988765
No 18
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-44 Score=422.25 Aligned_cols=283 Identities=30% Similarity=0.417 Sum_probs=258.1
Q ss_pred eCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeecchhH
Q psy15183 324 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADS 403 (1973)
Q Consensus 324 Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~ 403 (1973)
|++.+.++.++..+.+++.||||||+.+.++|++.+|||||+.++++++||++....++..|..+|.|++|+||||++++
T Consensus 1 i~~~~~l~~~~~~~~~~~~iAiDTEf~r~~t~~p~LcLIQi~~~e~~~lIdpl~~~~d~~~l~~Ll~d~~v~KIfHaa~~ 80 (361)
T COG0349 1 ITTGDLLAAACALLRGSKAIAIDTEFMRLRTYYPRLCLIQISDGEGASLIDPLAGILDLPPLVALLADPNVVKIFHAARF 80 (361)
T ss_pred CCchhHHHHHHHHhcCCCceEEecccccccccCCceEEEEEecCCCceEecccccccccchHHHHhcCCceeeeeccccc
Confidence 45677899999999999999999999999999999999999999999999999865678999999999999999999999
Q ss_pred hHHHHHHHhCCcccceeehhhhhhhcCCC-CccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHH
Q psy15183 404 DIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 482 (1973)
Q Consensus 404 Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~-~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d 482 (1973)
|+.+|++.||+.+.++|||++|+.++|++ ++||++||++++|++++|++|.+||++||||++|++||+.||.||+.||+
T Consensus 81 DL~~l~~~~g~~p~plfdTqiAa~l~g~~~~~gl~~Lv~~ll~v~ldK~~q~SDW~~RPLs~~Ql~YAa~DV~yL~~l~~ 160 (361)
T COG0349 81 DLEVLLNLFGLLPTPLFDTQIAAKLAGFGTSHGLADLVEELLGVELDKSEQRSDWLARPLSEAQLEYAAADVEYLLPLYD 160 (361)
T ss_pred cHHHHHHhcCCCCCchhHHHHHHHHhCCcccccHHHHHHHHhCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999977 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q psy15183 483 CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGY 562 (1973)
Q Consensus 483 ~L~~~L~e~g~~~~~~l~~v~~e~e~~~~~~y~~~~~~~~~~~~~~~k~~~l~~~ql~~l~~L~~WRd~~Ar~~D~s~~~ 562 (1973)
.|.++|.+.| ++.++.++++.+..+++. ...+..+|.++.. ...+.+.++++++.|++|||+.||..|+|++|
T Consensus 161 ~L~~~L~~~~-----r~~~a~~ef~~l~~r~~~-~~~~~~~w~~i~~-a~~~~p~~la~l~~La~wRe~~Ar~rd~~~~~ 233 (361)
T COG0349 161 KLTEELAREG-----RLEWAEDEFRLLPTRRTY-KVLPEDAWREIKI-AHSLDPRELAVLRELAAWREREARERDLARNF 233 (361)
T ss_pred HHHHHHHHcC-----chHHHHHHHHHhhhcccc-ccChHhHHHHhhh-hhcCChHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999998 466666776666555332 2246789988754 33899999999999999999999999999999
Q ss_pred cccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHhcCCC
Q psy15183 563 VLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 614 (1973)
Q Consensus 563 Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~~~~~ 614 (1973)
||+|+.|+.+|+.+|++..++.++.... ..+|.|+..|+.+|..|++.|..
T Consensus 234 vl~de~i~~~a~~~P~~~~~l~~l~~~~-~~~~~~~~~l~~~~~~a~~~p~~ 284 (361)
T COG0349 234 VLKDEALWELARYTPKNLKELDALGLIP-KERRRHGKLLLALLANALASPES 284 (361)
T ss_pred ccchhHHHHHHHhCCCCHHHHHhccCCc-ccchhhhHHHHHHHHHHHhCchh
Confidence 9999999999999999999999875544 48899999999999999998875
No 19
>KOG0678|consensus
Probab=100.00 E-value=2.7e-44 Score=405.70 Aligned_cols=370 Identities=24% Similarity=0.406 Sum_probs=308.6
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCC-----------CCccccceeccccccccccccEEeecccCCccc
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER-----------GKKDGETQVGNDISNIEAVRFQLKTQFDKNVVT 938 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~-----------~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~ 938 (1973)
++|+|+|+.+.|.||||...|.+++|+|++...... +..+-++++|+++.. ...+.+.+|+++|.|.
T Consensus 6 p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~--~~~ysl~ypiRhg~ve 83 (415)
T KOG0678|consen 6 PCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD--ATTYSLKYPIRHGQVE 83 (415)
T ss_pred ceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh--hcccccccceeccccc
Confidence 499999999999999999999999999998653322 122347899999987 3359999999999999
Q ss_pred CHHHHHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCC----C--
Q psy15183 939 HYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGW----E-- 1011 (1973)
Q Consensus 939 dwd~le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~----g-- 1011 (1973)
||+.||++|+..+ .+|..+|+ +|-.+||||++|+...|+.++|++||.|++|++|++.++++|+-+.=. +
T Consensus 84 ~wd~mer~~~q~ifkylr~ePe---dh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er 160 (415)
T KOG0678|consen 84 DWDLMERFWEQCIFKYLRAEPE---DHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER 160 (415)
T ss_pred cHHHHHHHHhhhhhhhhcCCcc---cceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999976 79999998 899999999999999999999999999999999999999998776521 1
Q ss_pred CceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHH
Q psy15183 1012 GQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREH 1091 (1973)
Q Consensus 1012 ~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~e 1091 (1973)
.-||+|||.|.+.|||+||.+|+|+-++++.+|++|+++|.+++++|+.+++..+..-..+.++.+|+.+||+++|+..+
T Consensus 161 ~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivke 240 (415)
T KOG0678|consen 161 FLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKE 240 (415)
T ss_pred eeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHH
Confidence 46999999999999999999999999999999999999999999999988887766666778999999999999987766
Q ss_pred HHhhhccccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCc
Q psy15183 1092 LRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDH 1171 (1973)
Q Consensus 1092 l~~~~~~~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~ 1171 (1973)
..++-.
T Consensus 241 f~k~d~-------------------------------------------------------------------------- 246 (415)
T KOG0678|consen 241 FAKYDR-------------------------------------------------------------------------- 246 (415)
T ss_pred HHHhcc--------------------------------------------------------------------------
Confidence 443210
Q ss_pred hhhHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHH
Q psy15183 1172 SHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYI 1251 (1973)
Q Consensus 1172 ~~~~~~l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i 1251 (1973)
++..|++ .+..+
T Consensus 247 ----------------------------------------------------------------ep~K~ik----q~~~~ 258 (415)
T KOG0678|consen 247 ----------------------------------------------------------------EPAKWIK----QYTGI 258 (415)
T ss_pred ----------------------------------------------------------------CHHHHHH----HHhcc
Confidence 1122322 00000
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhh
Q psy15183 1252 IDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQ 1331 (1973)
Q Consensus 1252 ~~k~~~r~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~ 1331 (1973)
+.+
T Consensus 259 --------------------------~~i--------------------------------------------------- 261 (415)
T KOG0678|consen 259 --------------------------NVI--------------------------------------------------- 261 (415)
T ss_pred --------------------------chh---------------------------------------------------
Confidence 000
Q ss_pred CCCCccccccccccCCCCCcEEEecceeeecccccCCCCCcCccc-ccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCC
Q psy15183 1332 HDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQ-AGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ 1410 (1973)
Q Consensus 1332 ~dp~~~~~~~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~-~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ 1410 (1973)
......+.+|-|||..||++|+|.....+. ..|++++...|++||+|.|+-||.||++.||.++
T Consensus 262 ---------------~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~ 326 (415)
T KOG0678|consen 262 ---------------TGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTM 326 (415)
T ss_pred ---------------cCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhccchHH
Confidence 000245778899999999999998765443 5799999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhcC--------------CCCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceee
Q psy15183 1411 LPGFVERLNKDLLENR--------------PFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFR 1476 (1973)
Q Consensus 1411 ipGf~eRL~~EL~~l~--------------p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~ 1476 (1973)
+.+|..|+++++..+. +....+++....-.++++|.|||.+++...|-..+-|+++|+|+|++|+.
T Consensus 327 fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r 406 (415)
T KOG0678|consen 327 FKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICR 406 (415)
T ss_pred HHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhChhhhh
Confidence 9999999999886542 22234666666677899999999999999999999999999999999966
Q ss_pred cc
Q psy15183 1477 VH 1478 (1973)
Q Consensus 1477 rk 1478 (1973)
.+
T Consensus 407 ~~ 408 (415)
T KOG0678|consen 407 TN 408 (415)
T ss_pred cC
Confidence 54
No 20
>TIGR01388 rnd ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown.
Probab=100.00 E-value=1.3e-42 Score=424.44 Aligned_cols=283 Identities=24% Similarity=0.364 Sum_probs=259.4
Q ss_pred EeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeecchh
Q psy15183 323 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 402 (1973)
Q Consensus 323 ~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak 402 (1973)
||+|.++|.++++.+..++.|||||||++.++|++.+|||||++++.+|+||++.+ .++..|+++|+|++|.||+|+++
T Consensus 1 ~I~t~~~l~~~~~~l~~~~~ia~DtE~~~~~~y~~~l~LiQia~~~~~~liD~~~~-~~~~~L~~lL~d~~i~KV~h~~k 79 (367)
T TIGR01388 1 WITTDDELATVCEAVRTFPFVALDTEFVRERTFWPQLGLIQVADGEQLALIDPLVI-IDWSPLKELLRDESVVKVLHAAS 79 (367)
T ss_pred CcCCHHHHHHHHHHHhcCCEEEEeccccCCCCCCCcceEEEEeeCCeEEEEeCCCc-ccHHHHHHHHCCCCceEEEeecH
Confidence 58999999999999999999999999999999999999999999999999999987 46889999999999999999999
Q ss_pred HhHHHHHHHhCCcccceeehhhhhhhcCCC-CccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 403 SDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 403 ~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~-~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
+|+++|++.+|+.+.++||||+|+|+||.+ ++||+.|+++|||+.++|+++.+||..|||+.+|+.||+.||+||+.||
T Consensus 80 ~Dl~~L~~~~~~~~~~~fDtqlAa~lL~~~~~~~l~~Lv~~~Lg~~l~K~~~~sdW~~rPL~~~q~~YAa~Dv~~L~~L~ 159 (367)
T TIGR01388 80 EDLEVFLNLFGELPQPLFDTQIAAAFCGFGMSMGYAKLVQEVLGVELDKSESRTDWLARPLTDAQLEYAAADVTYLLPLY 159 (367)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999888888899999999999999975 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy15183 482 DCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 561 (1973)
Q Consensus 482 d~L~~~L~e~g~~~~~~l~~v~~e~e~~~~~~y~~~~~~~~~~~~~~~k~~~l~~~ql~~l~~L~~WRd~~Ar~~D~s~~ 561 (1973)
+.|.++|.+.| ++.++.++++.++..... ...+.+.|.++.+ ...|+++|++++++|++|||++||+.|+|++
T Consensus 160 ~~L~~~L~~~g-----~~~w~~ee~~~l~~~~~~-~~~~~~~~~~i~~-~~~l~~~~l~~l~~L~~wRe~~A~~~d~p~~ 232 (367)
T TIGR01388 160 AKLMERLEESG-----RLAWLEEECTLLTDRRTY-VVNPEDAWRDIKN-AWQLRPQQLAVLQALAAWREREARERDLPRN 232 (367)
T ss_pred HHHHHHHHHcC-----cHHHHHHHHHHHhccccC-CCChHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999987 467888888877764322 2224567887732 2378999999999999999999999999999
Q ss_pred ccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHhcCCC
Q psy15183 562 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 614 (1973)
Q Consensus 562 ~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~~~~~ 614 (1973)
|||+|+.|++||++.|++.++|.++ ++.+..+|+|+++|+++|++|.+.|..
T Consensus 233 ~il~d~~l~~lA~~~P~~~~~l~~~-~~~~~~~r~~~~~l~~~i~~a~~~~~~ 284 (367)
T TIGR01388 233 FVLKEEALWELARQAPGNLTELASL-GPKGSEIRKHGDTLLALVKTALALPED 284 (367)
T ss_pred eeeCHHHHHHHHHhCCCCHHHHHhc-cCChHHHHhhHHHHHHHHHHHhhCCHh
Confidence 9999999999999999999999998 899999999999999999999987765
No 21
>KOG0797|consensus
Probab=100.00 E-value=3.9e-33 Score=330.14 Aligned_cols=215 Identities=20% Similarity=0.191 Sum_probs=184.5
Q ss_pred CCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCc-------------------------------------
Q psy15183 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKK------------------------------------- 908 (1973)
Q Consensus 866 ~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~------------------------------------- 908 (1973)
.+...||||+||.+.|+|.|.+..|. ..|+|++|.+......
T Consensus 31 ed~k~ivih~gsqnlrig~a~d~np~-tv~~~iar~~rap~sdr~~~~p~l~p~~~e~~n~~~~~ef~~~lll~~s~lss 109 (618)
T KOG0797|consen 31 EDAKLIVIHLGSQNLRIGLAMDENPF-TVPNCIARYIRAPVSDRMLNTPVLTPQHVEERNYNSAAEFLKILLLDESSLSS 109 (618)
T ss_pred cCCCeeEecCCcchhhccccccCCCc-ccccceeecccCchhhhcccCcCCCccccccccccchhhhhHHHHHhhhhhhh
Confidence 35678999999999999999999995 6799999876332000
Q ss_pred -----cc-------------------------------------------------cceeccccccccccccEEeecccC
Q psy15183 909 -----DG-------------------------------------------------ETQVGNDISNIEAVRFQLKTQFDK 934 (1973)
Q Consensus 909 -----~~-------------------------------------------------~~~vGdea~~~~~~~~~l~~Pi~~ 934 (1973)
.. ...+|.++..+.. |.+++||++
T Consensus 110 ~~~~kk~ri~v~~~~q~lkn~n~~S~aetvP~ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i~~--y~l~~Pir~ 187 (618)
T KOG0797|consen 110 SASRKKGRIDVYNQAQTLKNDNVASPAETVPDPSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKISP--YCLYHPIRR 187 (618)
T ss_pred HHHhhcCcccccCchHHhhcccccCccccCCCCCCCcCCCCccccccchHHHHHHHHHHhhhhhhcCCc--ceeeccccc
Confidence 00 1233444444432 899999999
Q ss_pred CcccC----------HHHHHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHH
Q psy15183 935 NVVTH----------YDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLF 1003 (1973)
Q Consensus 935 G~V~d----------wd~le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sll 1003 (1973)
|..+- .++++.||+|++ +.|.|....+..|.+|++.|..+.+.+.+.+..+||-.++|.++.+++++++
T Consensus 188 G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESla 267 (618)
T KOG0797|consen 188 GHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLA 267 (618)
T ss_pred ceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhH
Confidence 98753 568899999999 6899999888899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhh-CCC----CCCCCCHHHHHHHH
Q psy15183 1004 SYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLK-YPS----HINSITPSRSEELL 1078 (1973)
Q Consensus 1004 S~ya~G~g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k-~~~----~~~~~~~~~~e~iK 1078 (1973)
++||+|. +++||||||++.|+|+||.||.+++++..++++||.+|+..|..+|... +|+ ..+.++|.+++++|
T Consensus 268 atfGaGl--ss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LK 345 (618)
T KOG0797|consen 268 ATFGAGL--SSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLNQLK 345 (618)
T ss_pred HHhcCCc--cceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999876 343 45677899999999
Q ss_pred HHheecc
Q psy15183 1079 WDYGFVA 1085 (1973)
Q Consensus 1079 e~~c~va 1085 (1973)
+++|.+.
T Consensus 346 e~Fc~l~ 352 (618)
T KOG0797|consen 346 EKFCHLR 352 (618)
T ss_pred HHhcccc
Confidence 9999875
No 22
>KOG3463|consensus
Probab=99.96 E-value=1.2e-29 Score=245.34 Aligned_cols=75 Identities=60% Similarity=0.859 Sum_probs=73.4
Q ss_pred Cc-hhhhhccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHhHHHHhhhhhccccccceecCccccccccccccccc
Q psy15183 1 MS-YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTFLFIVTKMSDT 76 (1973)
Q Consensus 1 m~-y~~yr~st~g~~l~~~lde~~~~~~i~~~la~~vl~~fd~~~~~~l~~~v~~k~~~k~g~l~~y~~~~~~~~~~ 76 (1973)
|+ |||||+||||++|++||||||++|.|+|+||++||.+|||||+++|+++||+|++|| |||+||||||+||+|.
T Consensus 1 m~~YelYR~ttlG~~L~~tLDe~v~~g~itp~la~~VL~~FDKSi~~al~~~vk~kmsfk-g~L~tYr~CDnVWTFi 76 (109)
T KOG3463|consen 1 MSYYELYRRTTLGNALQKTLDELVSDGVITPSLAKKVLEQFDKSINEALNDKVKNKMSFK-GKLDTYRFCDNVWTFI 76 (109)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcccceeee-eccceeeeccceeeEE
Confidence 55 999999999999999999999999999999999999999999999999999999999 9999999999999985
No 23
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=1.9e-27 Score=289.80 Aligned_cols=205 Identities=16% Similarity=0.102 Sum_probs=168.0
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccc---cccEEeecccCCcccCHHHHHHH
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEA---VRFQLKTQFDKNVVTHYDIQEQI 946 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~---~~~~l~~Pi~~G~V~dwd~le~i 946 (1973)
.|+||+||+++|+|++|++ +...+||+|+...... ..+++|+++..... ....+.+|+++|.|.||+.++.+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~----~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~l 84 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTG----KVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAM 84 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCC----eEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHH
Confidence 3999999999999999876 4667899999875321 13689999976532 23788999999999999999999
Q ss_pred HHHHHhhcCcC-CCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCC
Q psy15183 947 FDYAFSHLSIN-TEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGY 1022 (1973)
Q Consensus 947 ~~~if~~L~i~-~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~ 1022 (1973)
|+|+|+++... +. ..++++++.|..++...|+.+.+ +||.+|++.+++..++++|+|++|.. ..+++|||+|+
T Consensus 85 l~~~~~~~~~~~~~--~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~ 161 (335)
T PRK13930 85 LRYFIKKARGRRFF--RKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGG 161 (335)
T ss_pred HHHHHHHHhhcccC--CCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCC
Confidence 99999765332 22 26789999999999988888777 79999999999999999999999862 34689999999
Q ss_pred CceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheecccc
Q psy15183 1023 QCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATD 1087 (1973)
Q Consensus 1023 s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~d 1087 (1973)
++|+|+||.+|.++. ...+++||.++|++|.++|..++.. ......++.+|+++|++..+
T Consensus 162 gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~~~~---~~~~~~ae~~K~~~~~~~~~ 221 (335)
T PRK13930 162 GTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRKYNL---LIGERTAEEIKIEIGSAYPL 221 (335)
T ss_pred CeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHhhcCcCC
Confidence 999999999999885 5678999999999999999877421 23456788888888887633
No 24
>PRK10829 ribonuclease D; Provisional
Probab=99.95 E-value=4e-27 Score=286.75 Aligned_cols=189 Identities=25% Similarity=0.402 Sum_probs=174.4
Q ss_pred CeEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeec
Q psy15183 1765 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 1844 (1973)
Q Consensus 1765 ~~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~H 1844 (1973)
.+.+|+|.++|.++++.+...+.+|||+|+++.++|.+.+|||||++++++|+||++++. .+..|+++|+|++|+||+|
T Consensus 2 ~~~~I~t~~~L~~~~~~l~~~~~lalDtEf~~~~ty~~~l~LiQl~~~~~~~LiD~l~~~-d~~~L~~ll~~~~ivKV~H 80 (373)
T PRK10829 2 NYQMITTDDALASVCEAARAFPAIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLGIT-DWSPFKALLRDPQVTKFLH 80 (373)
T ss_pred CcEEeCCHHHHHHHHHHHhcCCeEEEecccccCccCCCceeEEEEecCCceEEEecCCcc-chHHHHHHHcCCCeEEEEe
Confidence 477999999999999999999999999999999999999999999999999999999875 4788999999999999999
Q ss_pred chHHHHHHHHHhcCCcccccchHHHHHHHCCCC-CCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHH
Q psy15183 1845 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 1923 (1973)
Q Consensus 1845 g~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~-~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL 1923 (1973)
++++|+.+|++.+|+.+.++|||++|+++||.+ +.||+.|+++|||++++|..|.+||+.|||+++|+.||+.||+|++
T Consensus 81 ~~~~Dl~~l~~~~g~~p~~~fDTqiaa~~lg~~~~~gl~~Lv~~~lgv~ldK~~~~sDW~~RPLs~~ql~YAa~Dv~~L~ 160 (373)
T PRK10829 81 AGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPLSCGFASMVEEYTGVTLDKSESRTDWLARPLSERQCEYAAADVFYLL 160 (373)
T ss_pred ChHhHHHHHHHHcCCCcCCeeeHHHHHHHcCCCccccHHHHHHHHhCCccCcccccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999889999999999999999999977 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhhhc
Q psy15183 1924 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKY 1959 (1973)
Q Consensus 1924 ~Lyd~L~~eL~e~~~g~~~Ll~~V~~~s~~~~~~~y 1959 (1973)
.||+.|.++|.+. |..+++ .+.+..+|..+.
T Consensus 161 ~l~~~L~~~L~~~--g~~~w~---~ee~~~l~~~~~ 191 (373)
T PRK10829 161 PIAAKLMAETEAA--GWLPAA---LDECRLLCQRRQ 191 (373)
T ss_pred HHHHHHHHHHHHc--CcHHHH---HHHHHHHHhccc
Confidence 9999999999976 666655 456666776654
No 25
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins. The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-
Probab=99.94 E-value=6.5e-27 Score=256.49 Aligned_cols=157 Identities=34% Similarity=0.545 Sum_probs=148.3
Q ss_pred HHHHHHHHh-cCCeEEEEeeeccCCccCCcEEEEEEEeC-CceEEEEccCccccHHHHHHHHcCCCceeeecchhHhHHH
Q psy15183 330 VTQLVSELK-QQQEIAIDLEYHNYRSYQGYTCLMQISTR-DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 407 (1973)
Q Consensus 330 L~~ll~~L~-~~~~IavDtE~~~~~s~~g~l~LIQIst~-~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~ 407 (1973)
|+++++.|. .++.||+|+||.+..++.+.+|+|||+++ +.+|+||+..++..+..|+++|+|++|.||+|+++.|+..
T Consensus 2 l~~~~~~l~~~~~~ig~D~E~~~~~~~~~~~~liQl~~~~~~~~l~d~~~~~~~~~~L~~lL~d~~i~Kvg~~~k~D~~~ 81 (161)
T cd06129 2 LSSLCEDLSMDGDVIAFDMEWPPGRRYYGEVALIQLCVSEEKCYLFDPLSLSVDWQGLKMLLENPSIVKALHGIEGDLWK 81 (161)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCCCCCceEEEEEEECCCCEEEEecccCccCHHHHHHHhCCCCEEEEEeccHHHHHH
Confidence 678899999 99999999999998888899999999999 8999999998866788899999999999999999999999
Q ss_pred HHHHhCCcccceeehhhhhhhcCCC-CccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHH
Q psy15183 408 LQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 486 (1973)
Q Consensus 408 L~r~~Gi~~~nlFDT~lAA~lLg~~-~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~ 486 (1973)
|++.+|+.+.++|||++|++++|.+ +.||+.|+++|+|+.++|..|++||..||||++|+.|||.||++++.||+.|++
T Consensus 82 L~~~~gi~~~~~~D~~~aa~ll~~~~~~~L~~l~~~~lg~~l~K~~~~s~W~~rpLt~~qi~YAa~Da~~l~~l~~~l~~ 161 (161)
T cd06129 82 LLRDFGEKLQRLFDTTIAANLKGLPERWSLASLVEHFLGKTLDKSISCADWSYRPLTEDQKLYAAADVYALLIIYTKLRN 161 (161)
T ss_pred HHHHcCCCcccHhHHHHHHHHhCCCCCchHHHHHHHHhCCCCCccceeccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9888999999999999999999965 579999999999999999999999999999999999999999999999999863
No 26
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.94 E-value=2.7e-26 Score=279.85 Aligned_cols=200 Identities=13% Similarity=0.118 Sum_probs=161.3
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceecccccccc---ccccEEeecccCCcccCHHHHHHH
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIE---AVRFQLKTQFDKNVVTHYDIQEQI 946 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~---~~~~~l~~Pi~~G~V~dwd~le~i 946 (1973)
.|+||+||+++|+|++|++. .+.+||+|+.++... ..+++|+++.... ...+.+.+|+++|.|.||+.++.+
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~----~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~l 81 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTK----KVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKM 81 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCC----eEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHH
Confidence 49999999999999999887 578999999985421 1358999997653 233778999999999999999999
Q ss_pred HHHHHh-hcCcCCCCCCCCc-EEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeC
Q psy15183 947 FDYAFS-HLSINTEGNVNHP-IVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCG 1021 (1973)
Q Consensus 947 ~~~if~-~L~i~~~~~~~~p-VlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG 1021 (1973)
|+|+|. .+.. +. ++| ++++.| .+....++++++.+||.+|++.+++..++++|+|++|.. .+.++|||+|
T Consensus 82 l~~~~~~~~~~-~~---~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG 156 (334)
T PRK13927 82 LKYFIKKVHKN-FR---PSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG 156 (334)
T ss_pred HHHHHHHHhhc-cC---CCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeC
Confidence 999995 4444 33 454 555555 666777778899999999999999999999999999862 3457999999
Q ss_pred CCceEEEEe-ecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheecc
Q psy15183 1022 YQCTHVIPV-INGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 1085 (1973)
Q Consensus 1022 ~s~T~V~PV-~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va 1085 (1973)
+++|+|+|| ++|.+.... +++||.++|++|.++|..++.. ..+...++.+|+++|++.
T Consensus 157 ggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~~~---~~~~~~ae~iK~~~~~~~ 215 (334)
T PRK13927 157 GGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNYNL---LIGERTAERIKIEIGSAY 215 (334)
T ss_pred CCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHhCc---CcCHHHHHHHHHHhhccC
Confidence 999999999 788776655 4799999999999999866421 234556888888888764
No 27
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins. The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=99.94 E-value=4.6e-26 Score=256.76 Aligned_cols=165 Identities=25% Similarity=0.373 Sum_probs=149.9
Q ss_pred cEEeCCHHHHHHHHHH--HhcCCeEEEEeeeccCCcc--CCcEEEEEEEeCCceEEEEccCccc-----cHHHHHHHHcC
Q psy15183 321 LMMITEPEQVTQLVSE--LKQQQEIAIDLEYHNYRSY--QGYTCLMQISTRDKDYIVDTLKLRE-----DLEVLNEVLTD 391 (1973)
Q Consensus 321 ~~~Idt~e~L~~ll~~--L~~~~~IavDtE~~~~~s~--~g~l~LIQIst~~~~~lID~l~l~~-----~l~~L~~lL~d 391 (1973)
+.+|+|++++.+++.. +.....||+|+||.+...+ .+.+|+|||++.+.+|+||+..++. ....|+++|+|
T Consensus 1 ~~~i~~~~el~~~~~~~~l~~~~vig~D~Ew~~~~~~~~~~~v~LiQiat~~~~~lid~~~~~~~~~~~~~~~L~~ll~d 80 (193)
T cd06146 1 IHIVDSEEELEALLLALSLEAGRVVGIDSEWKPSFLGDSDPRVAILQLATEDEVFLLDLLALENLESEDWDRLLKRLFED 80 (193)
T ss_pred CeEecCHHHHHHHHHHHhhccCCEEEEECccCCCccCCCCCCceEEEEecCCCEEEEEchhccccchHHHHHHHHHHhCC
Confidence 4689999999999999 8999999999999876654 6899999999999999999988751 34579999999
Q ss_pred CCceeeecchhHhHHHHHHHhCCc------ccceeehhhhhhhcC------------CCCccHHHHHHHHcCCCCCcccc
Q psy15183 392 KNIVKVFHGADSDIKWLQKDFGLY------VVGMFDTHQACKFLP------------MPRQSLAYLLKHYCDVDSDKTFQ 453 (1973)
Q Consensus 392 p~I~KV~H~ak~Dl~~L~r~~Gi~------~~nlFDT~lAA~lLg------------~~~~sLa~Lv~~ylgv~ldK~~q 453 (1973)
|+|+|||||+++|+.+|+++||+. +.|+|||+.+++.++ ....||+.|+++++|+.++|..|
T Consensus 81 ~~i~KVg~~~~~D~~~L~~~~~~~~~~~~~~~~v~Dl~~~a~~l~~~~~~~~~~~~~~~~~sL~~l~~~~lg~~l~K~~q 160 (193)
T cd06146 81 PDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQEVLGKPLDKSEQ 160 (193)
T ss_pred CCeeEEEechHHHHHHHHHhcCccccccccCCceEEHHHHHHHHhhccccccccccCcccCCHHHHHHHHhCCCcCcccc
Confidence 999999999999999999999984 689999999888765 23579999999999999999999
Q ss_pred cccCCCCCCCchhHhHHHHhHHHHHHHHHHHH
Q psy15183 454 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 485 (1973)
Q Consensus 454 ~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~ 485 (1973)
++||+.||||++|+.|||.||++++.||+.|.
T Consensus 161 ~SdW~~rpLs~~Qi~YAA~Da~~l~~l~~~L~ 192 (193)
T cd06146 161 CSNWERRPLREEQILYAALDAYCLLEVFDKLL 192 (193)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999985
No 28
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.8e-26 Score=268.67 Aligned_cols=181 Identities=34% Similarity=0.505 Sum_probs=169.5
Q ss_pred eCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeecchHH
Q psy15183 1769 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADS 1848 (1973)
Q Consensus 1769 Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~ 1848 (1973)
|++.+.++.++..+.+.+.||||+|+.+.++|.+.+|||||+.+++.++||++.....+..|..+|.|++|+||+|.+.+
T Consensus 1 i~~~~~l~~~~~~~~~~~~iAiDTEf~r~~t~~p~LcLIQi~~~e~~~lIdpl~~~~d~~~l~~Ll~d~~v~KIfHaa~~ 80 (361)
T COG0349 1 ITTGDLLAAACALLRGSKAIAIDTEFMRLRTYYPRLCLIQISDGEGASLIDPLAGILDLPPLVALLADPNVVKIFHAARF 80 (361)
T ss_pred CCchhHHHHHHHHhcCCCceEEecccccccccCCceEEEEEecCCCceEecccccccccchHHHHhcCCceeeeeccccc
Confidence 35667788999999999999999999999999999999999999999999999866677889999999999999999999
Q ss_pred HHHHHHHhcCCcccccchHHHHHHHCCCC-CCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15183 1849 DIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 1927 (1973)
Q Consensus 1849 Di~~Lqr~~GI~l~nlfDT~lAayLL~~~-~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd 1927 (1973)
|+.+|.+.||+.+.++|||++|+.++|.. ++||+.|+++++|++++|+.|.+||+.||||++|+.||+.|++||+.||+
T Consensus 81 DL~~l~~~~g~~p~plfdTqiAa~l~g~~~~~gl~~Lv~~ll~v~ldK~~q~SDW~~RPLs~~Ql~YAa~DV~yL~~l~~ 160 (361)
T COG0349 81 DLEVLLNLFGLLPTPLFDTQIAAKLAGFGTSHGLADLVEELLGVELDKSEQRSDWLARPLSEAQLEYAAADVEYLLPLYD 160 (361)
T ss_pred cHHHHHHhcCCCCCchhHHHHHHHHhCCcccccHHHHHHHHhCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999966 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHH
Q psy15183 1928 CMKLDLSAAAHGKQNLVLSTFTNS 1951 (1973)
Q Consensus 1928 ~L~~eL~e~~~g~~~Ll~~V~~~s 1951 (1973)
.|.++|.+. |...++.+.++..
T Consensus 161 ~L~~~L~~~--~r~~~a~~ef~~l 182 (361)
T COG0349 161 KLTEELARE--GRLEWAEDEFRLL 182 (361)
T ss_pred HHHHHHHHc--CchHHHHHHHHHh
Confidence 999999988 8888888886544
No 29
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins. The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-
Probab=99.93 E-value=4e-25 Score=242.36 Aligned_cols=157 Identities=34% Similarity=0.545 Sum_probs=147.3
Q ss_pred HHHHHHHHh-cCceeEEEeeeccCCccCCceeEEEEEeC-CceEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHH
Q psy15183 1775 VTQLVSELK-QQQEIAIDLEYHNYRSYQGYTCLMQISTR-DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKW 1852 (1973)
Q Consensus 1775 L~~ll~~L~-~a~~IavDlE~~~~~s~~g~v~LlQISt~-~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~ 1852 (1973)
++++++.|. ..+.||||+||.+...+.+.+|++||+++ +.+|+||+..++..+..|+++|+|++|.|||||++.|+..
T Consensus 2 l~~~~~~l~~~~~~ig~D~E~~~~~~~~~~~~liQl~~~~~~~~l~d~~~~~~~~~~L~~lL~d~~i~Kvg~~~k~D~~~ 81 (161)
T cd06129 2 LSSLCEDLSMDGDVIAFDMEWPPGRRYYGEVALIQLCVSEEKCYLFDPLSLSVDWQGLKMLLENPSIVKALHGIEGDLWK 81 (161)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCCCCCceEEEEEEECCCCEEEEecccCccCHHHHHHHhCCCCEEEEEeccHHHHHH
Confidence 678899999 99999999999988778899999999999 9999999998876778899999999999999999999999
Q ss_pred HHHhcCCcccccchHHHHHHHCCCC-CCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1853 LQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 1931 (1973)
Q Consensus 1853 Lqr~~GI~l~nlfDT~lAayLL~~~-~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~ 1931 (1973)
|.+++|+.+.++|||++|+|+++.+ +.||+.|+++|+|..++|..|.+||..|||+++|+.|||.||++++.||+.|++
T Consensus 82 L~~~~gi~~~~~~D~~~aa~ll~~~~~~~L~~l~~~~lg~~l~K~~~~s~W~~rpLt~~qi~YAa~Da~~l~~l~~~l~~ 161 (161)
T cd06129 82 LLRDFGEKLQRLFDTTIAANLKGLPERWSLASLVEHFLGKTLDKSISCADWSYRPLTEDQKLYAAADVYALLIIYTKLRN 161 (161)
T ss_pred HHHHcCCCcccHhHHHHHHHHhCCCCCchHHHHHHHHhCCCCCccceeccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9978999999999999999999964 679999999999999999999999999999999999999999999999999864
No 30
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.92 E-value=2.5e-24 Score=262.53 Aligned_cols=206 Identities=14% Similarity=0.117 Sum_probs=161.1
Q ss_pred EEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceecccccccc---ccccEEeecccCCcccCHHHHHHHH
Q psy15183 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIE---AVRFQLKTQFDKNVVTHYDIQEQIF 947 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~---~~~~~l~~Pi~~G~V~dwd~le~i~ 947 (1973)
|=||+||.++++-..+.. -....||+|+......+..+..+++|+++.... ...+.+.+|+.+|.|.||+.++.+|
T Consensus 5 ~giDlGt~~s~i~~~~~~-~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~~ 83 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG-IVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKMI 83 (333)
T ss_pred eEEecCcceEEEEECCCC-EEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHHH
Confidence 789999999998664432 234568999877543222222468999997762 2347889999999999999999999
Q ss_pred HHHHhh-cCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCC
Q psy15183 948 DYAFSH-LSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQ 1023 (1973)
Q Consensus 948 ~~if~~-L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s 1023 (1973)
+|+|.+ +..... ..-++++++|..++...|+. ++.+||.+|++.+++..++++|+|++|.. ..+++|||+|++
T Consensus 84 ~~~l~~~~~~~~~--~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~g 160 (333)
T TIGR00904 84 KYFIKQVHSRKSF--FKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGG 160 (333)
T ss_pred HHHHHHHhccccc--CCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCC
Confidence 999964 333221 12379999999999999887 56689999999999999999999999862 367899999999
Q ss_pred ceEEEEe-ecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccc
Q psy15183 1024 CTHVIPV-INGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVAT 1086 (1973)
Q Consensus 1024 ~T~V~PV-~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~ 1086 (1973)
+|+|++| ++|.++...+ ++||+++|+.|.+++..++. ...+...++.+|+++|++..
T Consensus 161 ttdvs~v~~~~~~~~~~~---~lGG~did~~l~~~l~~~~~---~~~~~~~ae~lK~~l~~~~~ 218 (333)
T TIGR00904 161 TTEVAVISLGGIVVSRSI---RVGGDEFDEAIINYIRRTYN---LLIGEQTAERIKIEIGSAYP 218 (333)
T ss_pred eEEEEEEEeCCEEecCCc---cchHHHHHHHHHHHHHHHhc---ccCCHHHHHHHHHHHhcccc
Confidence 9999999 7887776543 79999999999999876642 23445678888888887753
No 31
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins. The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=99.92 E-value=1.9e-24 Score=243.71 Aligned_cols=165 Identities=25% Similarity=0.376 Sum_probs=149.2
Q ss_pred eEEeCCHHHHHHHHHH--HhcCceeEEEeeeccCCcc--CCceeEEEEEeCCceEEEEcCCch-----hhHHHHHHHHcC
Q psy15183 1766 LMMITEPEQVTQLVSE--LKQQQEIAIDLEYHNYRSY--QGYTCLMQISTRDKDYIVDTLKLR-----EDLEVLNEVLTD 1836 (1973)
Q Consensus 1766 ~~~Idt~e~L~~ll~~--L~~a~~IavDlE~~~~~s~--~g~v~LlQISt~~~~~iiD~l~l~-----~~l~~L~~lLed 1836 (1973)
+++|++++++.+++.. +.....||||+||.+.... .+.+|+||||+.+.+|+||+..++ .....|+++|+|
T Consensus 1 ~~~i~~~~el~~~~~~~~l~~~~vig~D~Ew~~~~~~~~~~~v~LiQiat~~~~~lid~~~~~~~~~~~~~~~L~~ll~d 80 (193)
T cd06146 1 IHIVDSEEELEALLLALSLEAGRVVGIDSEWKPSFLGDSDPRVAILQLATEDEVFLLDLLALENLESEDWDRLLKRLFED 80 (193)
T ss_pred CeEecCHHHHHHHHHHHhhccCCEEEEECccCCCccCCCCCCceEEEEecCCCEEEEEchhccccchHHHHHHHHHHhCC
Confidence 4689999999999999 8899999999999876543 689999999999999999998765 245679999999
Q ss_pred CCceEeecchHHHHHHHHHhcCCc------ccccchHHHHHHHCC------------CCCCcHHHHHHHHcCCCCCcccc
Q psy15183 1837 KNIVKVFHGADSDIKWLQKDFGLY------VVGMFDTHQACKFLP------------MPRQSLAYLLKHYCDVDSDKTFQ 1898 (1973)
Q Consensus 1837 p~I~KV~Hg~K~Di~~Lqr~~GI~------l~nlfDT~lAayLL~------------~~~~sLa~La~~yLg~~l~K~~q 1898 (1973)
|+|+|||||++.|+.+|+++||+. +.|++||+.+++.+. ....||+.|++++||..++|..|
T Consensus 81 ~~i~KVg~~~~~D~~~L~~~~~~~~~~~~~~~~v~Dl~~~a~~l~~~~~~~~~~~~~~~~~sL~~l~~~~lg~~l~K~~q 160 (193)
T cd06146 81 PDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQEVLGKPLDKSEQ 160 (193)
T ss_pred CCeeEEEechHHHHHHHHHhcCccccccccCCceEEHHHHHHHHhhccccccccccCcccCCHHHHHHHHhCCCcCcccc
Confidence 999999999999999999999974 579999999888765 23569999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1899 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 1930 (1973)
Q Consensus 1899 ~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~ 1930 (1973)
++||+.|||+++|+.|||.||++++.||+.|.
T Consensus 161 ~SdW~~rpLs~~Qi~YAA~Da~~l~~l~~~L~ 192 (193)
T cd06146 161 CSNWERRPLREEQILYAALDAYCLLEVFDKLL 192 (193)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999985
No 32
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins. The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs. Some members of this subfamily do not have a completely conserved YX(3)D pattern at the ExoIII motif.
Probab=99.92 E-value=1e-24 Score=246.70 Aligned_cols=159 Identities=33% Similarity=0.432 Sum_probs=143.9
Q ss_pred HHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeC-CceEEEEccCcc--ccHHHHHHHHcCCCceeeecchhHhHHHHH
Q psy15183 333 LVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTR-DKDYIVDTLKLR--EDLEVLNEVLTDKNIVKVFHGADSDIKWLQ 409 (1973)
Q Consensus 333 ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~-~~~~lID~l~l~--~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~ 409 (1973)
+++.|.+++.||||+|+.+.+. .|.+|||||++. +.+||||++.++ .....|+++|++++|.||+||++.|+.+|+
T Consensus 3 ~~~~l~~~~~i~~D~E~~~~~~-~~~~~LiQia~~~~~v~l~D~~~~~~~~~~~~L~~iLe~~~i~Kv~h~~k~D~~~L~ 81 (197)
T cd06148 3 AIIHLKKQKVIGLDCEGVNLGR-KGKLCLVQIATRTGQIYLFDILKLGSIVFINGLKDILESKKILKVIHDCRRDSDALY 81 (197)
T ss_pred hhhhhhhCCEEEEEcccccCCC-CCCEEEEEEeeCCCcEEEEEhhhccchhHHHHHHHHhcCCCccEEEEechhHHHHHH
Confidence 4667888999999999988776 689999999999 999999999875 246789999999999999999999999998
Q ss_pred HHhCCcccceeehhhhhhhcCCC---------CccHHHHHHHHcCCCCCc--------ccccccCCCCCCCchhHhHHHH
Q psy15183 410 KDFGLYVVGMFDTHQACKFLPMP---------RQSLAYLLKHYCDVDSDK--------TFQLFDWRHRPLPEPAIQYART 472 (1973)
Q Consensus 410 r~~Gi~~~nlFDT~lAA~lLg~~---------~~sLa~Lv~~ylgv~ldK--------~~q~sDW~~RPLs~eql~YAa~ 472 (1973)
+.+|+.+.++|||++|+++|+.. ..||+.++++|+|+.++| ..+.+||..|||+++|+.|||.
T Consensus 82 ~~~gi~~~~~fDt~iA~~lL~~~~~~~~~~~~~~~L~~l~~~~l~~~~~k~~~~~~~~~~~~s~W~~RPLt~~ql~YAa~ 161 (197)
T cd06148 82 HQYGIKLNNVFDTQVADALLQEQETGGFNPDRVISLVQLLDKYLYISISLKEDVKKLMREDPKFWALRPLTEDMIRYAAL 161 (197)
T ss_pred HhcCccccceeeHHHHHHHHHHHhcCCccccccccHHHHHHHhhCCChHHHHHHHHHHhcCchhhhcCCCCHHHHHHHHH
Confidence 89999999999999999999632 259999999999999865 4678999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q psy15183 473 DTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 473 Da~~Ll~L~d~L~~~L~e~g 492 (1973)
||++|+.||+.|..+|.+..
T Consensus 162 Dv~~Ll~l~~~l~~~l~~~~ 181 (197)
T cd06148 162 DVLCLLPLYYAMLDALISKF 181 (197)
T ss_pred HHHhHHHHHHHHHHHhhhhH
Confidence 99999999999999999864
No 33
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins. WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.
Probab=99.91 E-value=3.2e-24 Score=236.90 Aligned_cols=162 Identities=25% Similarity=0.346 Sum_probs=150.5
Q ss_pred eCCHHHHHHHHHHHh-cCCeEEEEeeeccCCc--cCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeecc
Q psy15183 324 ITEPEQVTQLVSELK-QQQEIAIDLEYHNYRS--YQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHG 400 (1973)
Q Consensus 324 Idt~e~L~~ll~~L~-~~~~IavDtE~~~~~s--~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ 400 (1973)
+++.+++.++++.+. ....||+|+||.+..+ +.+.+|+|||++.+.+|+||+..+......|.++|++++|.||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ig~D~E~~~~~~~~~~~~~~liQl~~~~~~~l~~~~~~~~~~~~l~~ll~~~~i~kv~~~ 80 (170)
T cd06141 1 TDSAQDAEEAVKELLGKEKVVGFDTEWRPSFRKGKRNKVALLQLATESRCLLFQLAHMDKLPPSLKQLLEDPSILKVGVG 80 (170)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEeCccCCccCCCCCCCceEEEEecCCcEEEEEhhhhhcccHHHHHHhcCCCeeEEEee
Confidence 357888999999998 9999999999998766 7899999999999999999999876667789999999999999999
Q ss_pred hhHhHHHHHHHhCCcccceeehhhhhhhcCCC--CccHHHHHHHHcCCCCC--cccccccCCCCCCCchhHhHHHHhHHH
Q psy15183 401 ADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP--RQSLAYLLKHYCDVDSD--KTFQLFDWRHRPLPEPAIQYARTDTHY 476 (1973)
Q Consensus 401 ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~--~~sLa~Lv~~ylgv~ld--K~~q~sDW~~RPLs~eql~YAa~Da~~ 476 (1973)
++.|+..|++.+|+.+.++|||++|+++++.. ..||++|+.+|+|..++ |..|++||..|||+++|++|||.||++
T Consensus 81 ~k~D~~~L~~~~g~~~~~~~Dl~~aa~ll~~~~~~~~l~~l~~~~l~~~~~k~k~~~~s~W~~rpLt~~qi~YAa~Da~~ 160 (170)
T cd06141 81 IKGDARKLARDFGIEVRGVVDLSHLAKRVGPRRKLVSLARLVEEVLGLPLSKPKKVRCSNWEARPLSKEQILYAATDAYA 160 (170)
T ss_pred eHHHHHHHHhHcCCCCCCeeeHHHHHHHhCCCcCCccHHHHHHHHcCcccCCCCCcccCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999889999999999999999999964 47999999999999998 888999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy15183 477 LLYVYDCMK 485 (1973)
Q Consensus 477 Ll~L~d~L~ 485 (1973)
++.||+.|+
T Consensus 161 ~~~l~~~l~ 169 (170)
T cd06141 161 SLELYRKLL 169 (170)
T ss_pred HHHHHHHHh
Confidence 999999985
No 34
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.91 E-value=4.8e-24 Score=260.03 Aligned_cols=202 Identities=14% Similarity=0.190 Sum_probs=160.1
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccc---cccEEeecccCCcccCHHHHHHH
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEA---VRFQLKTQFDKNVVTHYDIQEQI 946 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~---~~~~l~~Pi~~G~V~dwd~le~i 946 (1973)
.|=||+||.++++-..+... -...||+|+...... ..++||++|..... ....+.+|+++|.|.||+.++.+
T Consensus 6 ~~giDlGt~~~~i~~~~~~~-~~~~ps~va~~~~~~----~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~ 80 (335)
T PRK13929 6 EIGIDLGTANILVYSKNKGI-ILNEPSVVAVDTETK----AVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDL 80 (335)
T ss_pred eEEEEcccccEEEEECCCcE-EecCCcEEEEECCCC----eEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHH
Confidence 48899999999983333321 123688888763322 13589999977542 23777899999999999999999
Q ss_pred HHHHHh----hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEe
Q psy15183 947 FDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIIS 1019 (1973)
Q Consensus 947 ~~~if~----~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVD 1019 (1973)
|+|++. .|+..+. .++++++.|..++...|+.+.+ +|+.+|++.+++..++++|+|++|.. ..+++|||
T Consensus 81 l~~~~~~~~~~l~~~~~---~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvD 156 (335)
T PRK13929 81 LKQIMKKAGKNIGMTFR---KPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVD 156 (335)
T ss_pred HHHHHHHHHHhcCCCCC---CCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEE
Confidence 999995 4666553 4789999999999999999999 99999999999999999999999741 47899999
Q ss_pred eCCCceEEEEe-ecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccc
Q psy15183 1020 CGYQCTHVIPV-INGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVAT 1086 (1973)
Q Consensus 1020 iG~s~T~V~PV-~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~ 1086 (1973)
+|+++|+|++| ++|.+... .+++||+++|++|.+.|..+|.. ......+|++|+++|++..
T Consensus 157 iG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~~~~---~~~~~~AE~iK~~l~~~~~ 218 (335)
T PRK13929 157 IGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKKYNL---LIGERTAEQVKMEIGYALI 218 (335)
T ss_pred eCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHHhCc---CcCHHHHHHHHHHHcCCCC
Confidence 99999999999 56655433 35799999999999999866421 1234678999999988753
No 35
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=99.91 E-value=4.1e-25 Score=210.27 Aligned_cols=79 Identities=46% Similarity=0.686 Sum_probs=75.7
Q ss_pred chhhhhccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHhHHHHhhhhhccccccceecCcccccccccccccc--cccc
Q psy15183 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTFLFIVTKMSD--TNQE 79 (1973)
Q Consensus 2 ~y~~yr~st~g~~l~~~lde~~~~~~i~~~la~~vl~~fd~~~~~~l~~~v~~k~~~k~g~l~~y~~~~~~~~~--~~~~ 79 (1973)
+|||||+|+||..|+|+|||||++|+|+|+|||+||+.|||+|.++|+++|++++||| |||+||+|||.||.| +||-
T Consensus 4 yYElYRrs~ig~~L~dalD~lis~g~isp~lam~vLetFDksv~e~l~~~v~s~ltfK-G~lDtY~fcD~VWtFi~kn~~ 82 (113)
T COG5123 4 YYELYRRSMIGKVLEDALDELISAGVISPNLAMHVLETFDKSVPEVLNKSVTSSLTFK-GKLDTYNFCDGVWTFITKNFV 82 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhhhHHHHHHHhhhheeeEEe-ecccccccccceeEEEecCeE
Confidence 4999999999999999999999999999999999999999999999999999999999 999999999999998 4666
Q ss_pred cC
Q psy15183 80 IP 81 (1973)
Q Consensus 80 ~~ 81 (1973)
|+
T Consensus 83 ~s 84 (113)
T COG5123 83 MS 84 (113)
T ss_pred EE
Confidence 65
No 36
>TIGR01388 rnd ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown.
Probab=99.90 E-value=3.7e-23 Score=253.81 Aligned_cols=185 Identities=25% Similarity=0.409 Sum_probs=167.5
Q ss_pred EeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeecchH
Q psy15183 1768 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 1847 (1973)
Q Consensus 1768 ~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K 1847 (1973)
+|+|.+++.++++.+..+++||||+|+++.++|.+.+|||||++++.+|+||++.+. .+..|.++|+|++|.||+||++
T Consensus 1 ~I~t~~~l~~~~~~l~~~~~ia~DtE~~~~~~y~~~l~LiQia~~~~~~liD~~~~~-~~~~L~~lL~d~~i~KV~h~~k 79 (367)
T TIGR01388 1 WITTDDELATVCEAVRTFPFVALDTEFVRERTFWPQLGLIQVADGEQLALIDPLVII-DWSPLKELLRDESVVKVLHAAS 79 (367)
T ss_pred CcCCHHHHHHHHHHHhcCCEEEEeccccCCCCCCCcceEEEEeeCCeEEEEeCCCcc-cHHHHHHHHCCCCceEEEeecH
Confidence 478999999999999999999999999998899999999999999999999999873 5788999999999999999999
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHCCCC-CCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15183 1848 SDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 1926 (1973)
Q Consensus 1848 ~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~-~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Ly 1926 (1973)
.|+.+|++.+|+...++|||++|+|+|+.. +.||+.|+++|||+.++|..+.++|..|||+.+|+.||+.||++++.||
T Consensus 80 ~Dl~~L~~~~~~~~~~~fDtqlAa~lL~~~~~~~l~~Lv~~~Lg~~l~K~~~~sdW~~rPL~~~q~~YAa~Dv~~L~~L~ 159 (367)
T TIGR01388 80 EDLEVFLNLFGELPQPLFDTQIAAAFCGFGMSMGYAKLVQEVLGVELDKSESRTDWLARPLTDAQLEYAAADVTYLLPLY 159 (367)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999977788788899999999999964 5799999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhhh
Q psy15183 1927 DCMKLDLSAAAHGKQNLVLSTFTNSRNICKLK 1958 (1973)
Q Consensus 1927 d~L~~eL~e~~~g~~~Ll~~V~~~s~~~~~~~ 1958 (1973)
+.|.++|.+. |...++. +++..+|...
T Consensus 160 ~~L~~~L~~~--g~~~w~~---ee~~~l~~~~ 186 (367)
T TIGR01388 160 AKLMERLEES--GRLAWLE---EECTLLTDRR 186 (367)
T ss_pred HHHHHHHHHc--CcHHHHH---HHHHHHhccc
Confidence 9999999877 6666654 5555666553
No 37
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli polI it is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D) [].; GO: 0003676 nucleic acid binding, 0008408 3'-5' exonuclease activity, 0006139 nucleobase-containing compound metabolic process, 0005622 intracellular; PDB: 2HBK_A 2HBJ_A 2HBM_A 2HBL_A 2FC0_A 2FBY_A 2FBX_A 2FBT_A 2FBV_A 1YT3_A ....
Probab=99.90 E-value=3.2e-23 Score=228.55 Aligned_cols=169 Identities=35% Similarity=0.582 Sum_probs=154.6
Q ss_pred cEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCc--cCCcEEEEEEEeCCceEEEEccCcccc--HHHHHHHHcCCCcee
Q psy15183 321 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRS--YQGYTCLMQISTRDKDYIVDTLKLRED--LEVLNEVLTDKNIVK 396 (1973)
Q Consensus 321 ~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s--~~g~l~LIQIst~~~~~lID~l~l~~~--l~~L~~lL~dp~I~K 396 (1973)
|++|+|.+++.+++..+.+.+.+|+|+|+.+..+ ..+.++++|+++++.+|++++...... +..|+++|+|++|.|
T Consensus 1 y~~v~~~~~l~~~~~~l~~~~~~a~D~E~~~~~~~~~~~~~~~iq~~~~~~~~i~~~~~~~~~~~~~~l~~ll~~~~i~k 80 (176)
T PF01612_consen 1 YQIVDTEEELEEAIKKLKNAKVLAFDTETTGLDPYSYNPKIALIQLATGEGCYIIDPIDLGDNWILDALKELLEDPNIIK 80 (176)
T ss_dssp SEEEHSHHHHHHHHHHHTTTSEEEEEEEEETSTSTTSSEEEEEEEEEESCEEEEECGTTSTTTTHHHHHHHHHTTTTSEE
T ss_pred CEecCCHHHHHHHHHHHcCCCeEEEEEEECCCCccccCCeEEEEEEecCCCceeeeeccccccchHHHHHHHHhCCCccE
Confidence 6789999999999999999999999999998776 678999999999999999999887653 789999999999999
Q ss_pred eecchhHhHHHHHHHhCCcccceeehhhhhhhcCCCC-ccHHHHHHHHcC-CCCCcccccccCC-CCCCCchhHhHHHHh
Q psy15183 397 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR-QSLAYLLKHYCD-VDSDKTFQLFDWR-HRPLPEPAIQYARTD 473 (1973)
Q Consensus 397 V~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~~-~sLa~Lv~~ylg-v~ldK~~q~sDW~-~RPLs~eql~YAa~D 473 (1973)
|+||+++|+.+|++.+|+.+.+++||++|+++++..+ +||++|+.+|+| ..+++..+.++|. .|||+++|+.|||.|
T Consensus 81 v~~n~~~D~~~L~~~~~i~~~~~~D~~l~~~~l~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~YAa~D 160 (176)
T PF01612_consen 81 VGHNAKFDLKWLYRSFGIDLKNVFDTMLAAYLLDPTRSYSLKDLAEEYLGNIDLDKKEQMSDWRKARPLSEEQIEYAAQD 160 (176)
T ss_dssp EESSHHHHHHHHHHHHTS--SSEEEHHHHHHHTTTSTTSSHHHHHHHHHSEEE-GHCCTTSSTTTSSS-HHHHHHHHHHH
T ss_pred EEEEEechHHHHHHHhccccCCccchhhhhhcccccccccHHHHHHHHhhhccCcHHHhhccCCcCCCChHHHHHHHHHH
Confidence 9999999999998889999999999999999999666 999999999999 7788899999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15183 474 THYLLYVYDCMKLDLS 489 (1973)
Q Consensus 474 a~~Ll~L~d~L~~~L~ 489 (1973)
|++++.||+.|.++|+
T Consensus 161 ~~~~~~l~~~l~~~l~ 176 (176)
T PF01612_consen 161 AVVTFRLYEKLKPQLE 176 (176)
T ss_dssp HHTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999873
No 38
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins. WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.
Probab=99.89 E-value=9.9e-23 Score=225.10 Aligned_cols=161 Identities=25% Similarity=0.350 Sum_probs=149.3
Q ss_pred CCHHHHHHHHHHHh-cCceeEEEeeeccCCc--cCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeecch
Q psy15183 1770 TEPEQVTQLVSELK-QQQEIAIDLEYHNYRS--YQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 1846 (1973)
Q Consensus 1770 dt~e~L~~ll~~L~-~a~~IavDlE~~~~~s--~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~ 1846 (1973)
++..++..+++.+. ....||||+||.+... +.+.+|++|||+.+.+|+||+..+......|+++|++++|.|||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ig~D~E~~~~~~~~~~~~~~liQl~~~~~~~l~~~~~~~~~~~~l~~ll~~~~i~kv~~~~ 81 (170)
T cd06141 2 DSAQDAEEAVKELLGKEKVVGFDTEWRPSFRKGKRNKVALLQLATESRCLLFQLAHMDKLPPSLKQLLEDPSILKVGVGI 81 (170)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEeCccCCccCCCCCCCceEEEEecCCcEEEEEhhhhhcccHHHHHHhcCCCeeEEEeee
Confidence 57788999999998 9999999999987665 67899999999999999999988766778899999999999999999
Q ss_pred HHHHHHHHHhcCCcccccchHHHHHHHCCCC--CCcHHHHHHHHcCCCCC--cccccccCCCCCCCHHHHHHHHHHHHHH
Q psy15183 1847 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMP--RQSLAYLLKHYCDVDSD--KTFQLFDWRHRPLPEPAIQYARTDTHYL 1922 (1973)
Q Consensus 1847 K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~--~~sLa~La~~yLg~~l~--K~~q~sdW~~RPLs~eqi~YAa~DA~~L 1922 (1973)
+.|+..|.+.+|+.+.++|||++|+|+++.. ..||+.|+++|+|..++ |..|++||..|||+++|+.|||.||+++
T Consensus 82 k~D~~~L~~~~g~~~~~~~Dl~~aa~ll~~~~~~~~l~~l~~~~l~~~~~k~k~~~~s~W~~rpLt~~qi~YAa~Da~~~ 161 (170)
T cd06141 82 KGDARKLARDFGIEVRGVVDLSHLAKRVGPRRKLVSLARLVEEVLGLPLSKPKKVRCSNWEARPLSKEQILYAATDAYAS 161 (170)
T ss_pred HHHHHHHHhHcCCCCCCeeeHHHHHHHhCCCcCCccHHHHHHHHcCcccCCCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999888999999999999999999954 46999999999999998 8889999999999999999999999999
Q ss_pred HHHHHHHH
Q psy15183 1923 LYVYDCMK 1930 (1973)
Q Consensus 1923 L~Lyd~L~ 1930 (1973)
+.||+.|+
T Consensus 162 ~~l~~~l~ 169 (170)
T cd06141 162 LELYRKLL 169 (170)
T ss_pred HHHHHHHh
Confidence 99999985
No 39
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins. The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs. Some members of this subfamily do not have a completely conserved YX(3)D pattern at the ExoIII motif.
Probab=99.89 E-value=8.4e-23 Score=231.15 Aligned_cols=158 Identities=34% Similarity=0.439 Sum_probs=142.2
Q ss_pred HHHHHhcCceeEEEeeeccCCccCCceeEEEEEeC-CceEEEEcCCch--hhHHHHHHHHcCCCceEeecchHHHHHHHH
Q psy15183 1778 LVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTR-DKDYIVDTLKLR--EDLEVLNEVLTDKNIVKVFHGADSDIKWLQ 1854 (1973)
Q Consensus 1778 ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~-~~~~iiD~l~l~--~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lq 1854 (1973)
+++.|++++.||||+|+.+.+. .|.+|++||++. +.+|+||+..++ .....|+++|++++|.||+||++.|+.+|+
T Consensus 3 ~~~~l~~~~~i~~D~E~~~~~~-~~~~~LiQia~~~~~v~l~D~~~~~~~~~~~~L~~iLe~~~i~Kv~h~~k~D~~~L~ 81 (197)
T cd06148 3 AIIHLKKQKVIGLDCEGVNLGR-KGKLCLVQIATRTGQIYLFDILKLGSIVFINGLKDILESKKILKVIHDCRRDSDALY 81 (197)
T ss_pred hhhhhhhCCEEEEEcccccCCC-CCCEEEEEEeeCCCcEEEEEhhhccchhHHHHHHHHhcCCCccEEEEechhHHHHHH
Confidence 5677888999999999987665 689999999999 999999999875 356789999999999999999999999997
Q ss_pred HhcCCcccccchHHHHHHHCCCC---------CCcHHHHHHHHcCCCCCc--------ccccccCCCCCCCHHHHHHHHH
Q psy15183 1855 KDFGLYVVGMFDTHQACKFLPMP---------RQSLAYLLKHYCDVDSDK--------TFQLFDWRHRPLPEPAIQYART 1917 (1973)
Q Consensus 1855 r~~GI~l~nlfDT~lAayLL~~~---------~~sLa~La~~yLg~~l~K--------~~q~sdW~~RPLs~eqi~YAa~ 1917 (1973)
+.+|+.+.++|||++|+|+|+.. ..||+.++++|+|..++| ..+.+||..|||+++|+.|||.
T Consensus 82 ~~~gi~~~~~fDt~iA~~lL~~~~~~~~~~~~~~~L~~l~~~~l~~~~~k~~~~~~~~~~~~s~W~~RPLt~~ql~YAa~ 161 (197)
T cd06148 82 HQYGIKLNNVFDTQVADALLQEQETGGFNPDRVISLVQLLDKYLYISISLKEDVKKLMREDPKFWALRPLTEDMIRYAAL 161 (197)
T ss_pred HhcCccccceeeHHHHHHHHHHHhcCCccccccccHHHHHHHhhCCChHHHHHHHHHHhcCchhhhcCCCCHHHHHHHHH
Confidence 78999999999999999999732 259999999999998864 4678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy15183 1918 DTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1918 DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
||++++.||+.|+.+|.+.
T Consensus 162 Dv~~Ll~l~~~l~~~l~~~ 180 (197)
T cd06148 162 DVLCLLPLYYAMLDALISK 180 (197)
T ss_pred HHHhHHHHHHHHHHHhhhh
Confidence 9999999999999999875
No 40
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli polI it is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D) [].; GO: 0003676 nucleic acid binding, 0008408 3'-5' exonuclease activity, 0006139 nucleobase-containing compound metabolic process, 0005622 intracellular; PDB: 2HBK_A 2HBJ_A 2HBM_A 2HBL_A 2FC0_A 2FBY_A 2FBX_A 2FBT_A 2FBV_A 1YT3_A ....
Probab=99.88 E-value=4.6e-22 Score=219.32 Aligned_cols=169 Identities=35% Similarity=0.582 Sum_probs=153.1
Q ss_pred eEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCc--cCCceeEEEEEeCCceEEEEcCCchhh--HHHHHHHHcCCCceE
Q psy15183 1766 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRS--YQGYTCLMQISTRDKDYIVDTLKLRED--LEVLNEVLTDKNIVK 1841 (1973)
Q Consensus 1766 ~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s--~~g~v~LlQISt~~~~~iiD~l~l~~~--l~~L~~lLedp~I~K 1841 (1973)
|++|++.+++.+++..+...+.+|+|+||.+... ..+.++++|+++++.+|+++....... +..|+++|+||+|.|
T Consensus 1 y~~v~~~~~l~~~~~~l~~~~~~a~D~E~~~~~~~~~~~~~~~iq~~~~~~~~i~~~~~~~~~~~~~~l~~ll~~~~i~k 80 (176)
T PF01612_consen 1 YQIVDTEEELEEAIKKLKNAKVLAFDTETTGLDPYSYNPKIALIQLATGEGCYIIDPIDLGDNWILDALKELLEDPNIIK 80 (176)
T ss_dssp SEEEHSHHHHHHHHHHHTTTSEEEEEEEEETSTSTTSSEEEEEEEEEESCEEEEECGTTSTTTTHHHHHHHHHTTTTSEE
T ss_pred CEecCCHHHHHHHHHHHcCCCeEEEEEEECCCCccccCCeEEEEEEecCCCceeeeeccccccchHHHHHHHHhCCCccE
Confidence 5789999999999999999999999999988776 577889999999999999998887653 789999999999999
Q ss_pred eecchHHHHHHHHHhcCCcccccchHHHHHHHCCCCC-CcHHHHHHHHcC-CCCCcccccccCC-CCCCCHHHHHHHHHH
Q psy15183 1842 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPR-QSLAYLLKHYCD-VDSDKTFQLFDWR-HRPLPEPAIQYARTD 1918 (1973)
Q Consensus 1842 V~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~~-~sLa~La~~yLg-~~l~K~~q~sdW~-~RPLs~eqi~YAa~D 1918 (1973)
||||+++|+.+|.+.+|+.+.+++||++++++++... +||+.|+.+|+| ...++..+.++|. .+|++++|+.|||.|
T Consensus 81 v~~n~~~D~~~L~~~~~i~~~~~~D~~l~~~~l~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~YAa~D 160 (176)
T PF01612_consen 81 VGHNAKFDLKWLYRSFGIDLKNVFDTMLAAYLLDPTRSYSLKDLAEEYLGNIDLDKKEQMSDWRKARPLSEEQIEYAAQD 160 (176)
T ss_dssp EESSHHHHHHHHHHHHTS--SSEEEHHHHHHHTTTSTTSSHHHHHHHHHSEEE-GHCCTTSSTTTSSS-HHHHHHHHHHH
T ss_pred EEEEEechHHHHHHHhccccCCccchhhhhhcccccccccHHHHHHHHhhhccCcHHHhhccCCcCCCChHHHHHHHHHH
Confidence 9999999999999789999999999999999999665 899999999999 7778889999999 899999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15183 1919 THYLLYVYDCMKLDLS 1934 (1973)
Q Consensus 1919 A~~LL~Lyd~L~~eL~ 1934 (1973)
|++++.||+.|+++|+
T Consensus 161 ~~~~~~l~~~l~~~l~ 176 (176)
T PF01612_consen 161 AVVTFRLYEKLKPQLE 176 (176)
T ss_dssp HHTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999874
No 41
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.85 E-value=5.9e-21 Score=233.26 Aligned_cols=201 Identities=16% Similarity=0.139 Sum_probs=154.3
Q ss_pred EEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccc---cccEEeecccCCcccCHHHHHHHH
Q psy15183 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEA---VRFQLKTQFDKNVVTHYDIQEQIF 947 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~---~~~~l~~Pi~~G~V~dwd~le~i~ 947 (1973)
|=||+|+.++++-..++. -....||+++...... ..+.+|+++..... ..+.+.+|+.+|.|.||+.++.+|
T Consensus 6 ~gIDlGt~~~~i~~~~~~-~v~~~psvv~~~~~~~----~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l 80 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG-IVLNEPSVVAIDKNTN----KVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKML 80 (336)
T ss_pred eEEEcccccEEEEECCCC-EEEccCCEEEEECCCC----eEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHH
Confidence 789999999999766443 2234688888774322 12479999876632 247778999999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCc-EEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCC
Q psy15183 948 DYAFSHLSINTEGNVNHP-IVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQ 1023 (1973)
Q Consensus 948 ~~if~~L~i~~~~~~~~p-VlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s 1023 (1973)
+|+++++.... ...+| ++++.|.. ....++++++.+|+.+|++.+.+..++++|+|++|.. +..++|||+|++
T Consensus 81 ~~~~~~~~~~~--~~~~p~~vitvP~~-~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGgg 157 (336)
T PRK13928 81 KYFINKACGKR--FFSKPRIMICIPTG-ITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGG 157 (336)
T ss_pred HHHHHHHhccC--CCCCCeEEEEeCCC-CCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCC
Confidence 99997654331 12567 77788555 4556778888889999999999999999999999862 467999999999
Q ss_pred ceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheec
Q psy15183 1024 CTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFV 1084 (1973)
Q Consensus 1024 ~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~v 1084 (1973)
+|.|++|..|.++... .+++||+++|+.|.+.|..+|.. ......+|.+|+.+|++
T Consensus 158 ttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~~~~---~~~~~~ae~lK~~~~~~ 213 (336)
T PRK13928 158 TTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKKYKL---LIGERTAEEIKIKIGTA 213 (336)
T ss_pred eEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHHhch---hcCHHHHHHHHHHhccc
Confidence 9999999999877543 67999999999999999866421 12334567777666655
No 42
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.84 E-value=7.1e-20 Score=219.99 Aligned_cols=204 Identities=15% Similarity=0.168 Sum_probs=152.5
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccc---cccEEeecccCCcccCHHHHHHH
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEA---VRFQLKTQFDKNVVTHYDIQEQI 946 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~---~~~~l~~Pi~~G~V~dwd~le~i 946 (1973)
-|=||+||.++++-..+.. =....||+|+....... -+.+|++|..+.. ..+.+.+|+++|+|.|++..+.+
T Consensus 3 ~igIDLGT~~t~i~~~~~G-iv~~epSvVA~~~~~~~----i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~ 77 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG-IVLNEPSVVAYDKDTGK----ILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEM 77 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE-EEEEEES-EEEETTT------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHH
T ss_pred ceEEecCcccEEEEECCCC-EEEecCcEEEEECCCCe----EEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHH
Confidence 4789999999999444443 33567999998865432 3578999977643 23899999999999999999999
Q ss_pred HHHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCC
Q psy15183 947 FDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQ 1023 (1973)
Q Consensus 947 ~~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s 1023 (1973)
+.|++++..-.. .+....++++.|.-.+...|+.+.+.+ ...|+..|++..+++++++|+|.. +...+|||||++
T Consensus 78 l~~~l~k~~~~~-~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~G 155 (326)
T PF06723_consen 78 LRYFLKKALGRR-SFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGG 155 (326)
T ss_dssp HHHHHHHHHTSS--SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS
T ss_pred HHHHHHHhccCC-CCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCC
Confidence 999997543221 122567999999999999999999988 568999999999999999999973 567899999999
Q ss_pred ceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheecc
Q psy15183 1024 CTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 1085 (1973)
Q Consensus 1024 ~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va 1085 (1973)
+|.|+-+.-|.++. .+.+++||+++++-+.+.++.+|. -.+....+|.||++++++.
T Consensus 156 tTdiavislggiv~--s~si~~gG~~~DeaI~~~ir~~y~---l~Ig~~tAE~iK~~~g~~~ 212 (326)
T PF06723_consen 156 TTDIAVISLGGIVA--SRSIRIGGDDIDEAIIRYIREKYN---LLIGERTAEKIKIEIGSAS 212 (326)
T ss_dssp -EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHHHHHHS---EE--HHHHHHHHHHH-BSS
T ss_pred eEEEEEEECCCEEE--EEEEEecCcchhHHHHHHHHHhhC---cccCHHHHHHHHHhcceee
Confidence 99999999999884 567789999999999999999963 3467788999999998875
No 43
>KOG3463|consensus
Probab=99.84 E-value=3.8e-22 Score=193.56 Aligned_cols=84 Identities=49% Similarity=0.759 Sum_probs=78.4
Q ss_pred cccccccceeHHHHhhcCCceeec-ccCCCCccccccccccccccccccccceEEEEEeceEEeecceEEe-eCcEEEEE
Q psy15183 1454 SENFHDFAVTQSDYQEKGGEFFRV-HPCSNNKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFREVAEIAR-VNKLKIVA 1531 (1973)
Q Consensus 1454 l~sf~~~~ITreeY~E~G~~il~r-k~~~n~~V~~~~~~k~~~~~~~~~~d~vw~f~~~~~~~~~~~~~~~-~~~~kiva 1531 (1973)
++.++...||++...++..+|++. ..+++.+|++|++|| |+|+||||||||||||++|++||++++.++ ||+|||||
T Consensus 21 De~v~~g~itp~la~~VL~~FDKSi~~al~~~vk~kmsfk-g~L~tYr~CDnVWTFil~~~~~r~~~e~~~~vdkvkIVA 99 (109)
T KOG3463|consen 21 DELVSDGVITPSLAKKVLEQFDKSINEALNDKVKNKMSFK-GKLDTYRFCDNVWTFILKDVEFREDNESFKTVDKVKIVA 99 (109)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcccceeee-eccceeeeccceeeEEEcCeEEecccccccccceEEEEE
Confidence 466778999999999999999888 778899999999999 999999999999999999999999999996 99999999
Q ss_pred cCCCCCC
Q psy15183 1532 CDELSKT 1538 (1973)
Q Consensus 1532 c~~~s~t 1538 (1973)
|||+...
T Consensus 100 Cdg~~~~ 106 (109)
T KOG3463|consen 100 CDGKDSG 106 (109)
T ss_pred ecCcccc
Confidence 9997653
No 44
>PF02751 TFIIA_gamma_C: Transcription initiation factor IIA, gamma subunit; InterPro: IPR015871 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the beta-barrel domain found at the C-terminal of the gamma subunit of transcription factor TFIIA. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=99.81 E-value=6.9e-21 Score=165.48 Aligned_cols=50 Identities=64% Similarity=1.192 Sum_probs=45.4
Q ss_pred ccccccccccccccccccccceEEEEEeceEEee--cceEEeeCcEEEEEcCC
Q psy15183 1484 KVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFRE--VAEIARVNKLKIVACDE 1534 (1973)
Q Consensus 1484 ~V~~~~~~k~~~~~~~~~~d~vw~f~~~~~~~~~--~~~~~~~~~~kivac~~ 1534 (1973)
+|++|++|| |+|+|||||||||||+++|++||+ +++.+++|+||||||||
T Consensus 1 ~vk~k~~fK-G~L~tYrfcDnVWTFi~kn~~fk~~~~~~~~~~dkvKIVACd~ 52 (52)
T PF02751_consen 1 KVKNKLSFK-GHLDTYRFCDNVWTFILKNVEFKMEDNNETVKVDKVKIVACDS 52 (52)
T ss_dssp T---EEEEE-EEEEEEEEETTEEEEEEEEEEEEEE-SSEEEEEEEEEEEEEES
T ss_pred CcceeEEEE-EeeeEEEeeCcEEEEEEcCEEEEEecCCcEEEcCeEEEEEcCC
Confidence 589999999 999999999999999999999999 68999999999999996
No 45
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=99.79 E-value=6e-20 Score=157.76 Aligned_cols=49 Identities=69% Similarity=0.969 Sum_probs=44.3
Q ss_pred CchhhhhccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHhHHHHhhhh
Q psy15183 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALP 49 (1973)
Q Consensus 1 m~y~~yr~st~g~~l~~~lde~~~~~~i~~~la~~vl~~fd~~~~~~l~ 49 (1973)
|+|||||+||||.||+|||||||++|.|+|+||++||.+|||||+++|+
T Consensus 1 ~~yelYR~stlG~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~~L~ 49 (49)
T PF02268_consen 1 MYYELYRRSTLGIALTDTLDELIQEGKITPQLAMKVLEQFDKSINEALS 49 (49)
T ss_dssp ---CGGGCSHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999999985
No 46
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins. Ribonuclease (RNase) D is a bacterial enzyme involved in the maturation of small stable RNAs and the 3' maturation of tRNA. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. In vivo, RNase D only becomes essential upon removal of other ribonucleases. Eukaryotic RNase D homologs include yeast Rrp6p, human PM/Scl-100, and the Drosophila melanogaster egalitarian protein.
Probab=99.75 E-value=3.5e-17 Score=181.52 Aligned_cols=162 Identities=38% Similarity=0.630 Sum_probs=139.1
Q ss_pred HHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeecchhHhHHHHH
Q psy15183 330 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQ 409 (1973)
Q Consensus 330 L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~ 409 (1973)
|.++++.+...+.+++|+|+.+..++.+.++++|+++.+.+|+||+... .....|+++|+|+++.||+||++.|+.+|+
T Consensus 2 ~~~~~~~l~~~~~l~~~~e~~~~~~~~~~~~~i~l~~~~~~~~i~~~~~-~~~~~l~~ll~~~~i~kv~~d~K~~~~~L~ 80 (178)
T cd06142 2 LEDLCERLASAGVIAVDTEFMRLNTYYPRLCLIQISTGGEVYLIDPLAI-GDLSPLKELLADPNIVKVFHAAREDLELLK 80 (178)
T ss_pred HHHHHHHHhcCCeEEEECCccCCCcCCCceEEEEEeeCCCEEEEeCCCc-ccHHHHHHHHcCCCceEEEeccHHHHHHHH
Confidence 3455555555668999999877766678999999999855888885543 345668999999999999999999999997
Q ss_pred HHhCCcccceeehhhhhhhcCCC-CccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHH
Q psy15183 410 KDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 488 (1973)
Q Consensus 410 r~~Gi~~~nlFDT~lAA~lLg~~-~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L 488 (1973)
+.+|+..+++|||++|+|+|+.. +++|++|+++|+|..+.+....++|..||++.+|+.||+.|+++++.|++.|.++|
T Consensus 81 ~~~gi~~~~~~D~~laayLl~p~~~~~l~~l~~~~l~~~~~~~~~~~~w~~~~l~~~~~~yaa~~a~~l~~L~~~l~~~L 160 (178)
T cd06142 81 RDFGILPQNLFDTQIAARLLGLGDSVGLAALVEELLGVELDKGEQRSDWSKRPLTDEQLEYAALDVRYLLPLYEKLKEEL 160 (178)
T ss_pred HHcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHhCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77799976789999999999963 47999999999999866666778999999999999999999999999999999999
Q ss_pred HHhc
Q psy15183 489 SAAA 492 (1973)
Q Consensus 489 ~e~g 492 (1973)
.+.|
T Consensus 161 ~e~~ 164 (178)
T cd06142 161 EEEG 164 (178)
T ss_pred HHcC
Confidence 9887
No 47
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins. Yeast Rrp6p and its human homolog, the polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome.
Probab=99.73 E-value=8.5e-17 Score=181.64 Aligned_cols=187 Identities=62% Similarity=1.069 Sum_probs=152.7
Q ss_pred CCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceee
Q psy15183 318 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKV 397 (1973)
Q Consensus 318 ~~~~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV 397 (1973)
++|+.||++.+++..+++.+...+.+++++|+.++.++.+.++++|++++++.|+|+++........|.++|+++++.||
T Consensus 2 ~~~~~~i~~~~~l~~~~~~l~~~~~l~~~~e~~~~~~~~~~~~~l~l~~~~~~~~i~~l~~~~~~~~L~~~L~~~~i~kv 81 (192)
T cd06147 2 ETPLTFVDTEEKLEELVEKLKNCKEIAVDLEHHSYRSYLGFTCLMQISTREEDYIVDTLKLRDDMHILNEVFTDPNILKV 81 (192)
T ss_pred CCCcEEECCHHHHHHHHHHHhcCCeEEEEeEecCCccCCCceEEEEEecCCCcEEEEecccccchHHHHHHhcCCCceEE
Confidence 57899997778888877777656689999988777777889999999988778888743333345568999999999999
Q ss_pred ecchhHhHHHHHHHhCCcccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHH
Q psy15183 398 FHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 477 (1973)
Q Consensus 398 ~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~L 477 (1973)
+|++|.|+.+|.+.+|+.+.++|||++|+|+|+..+++|+.|+++|++..+.|..+.++|..+||+.+|..||+.++.++
T Consensus 82 ~~d~K~~~~~L~~~~gi~~~~~fD~~laaYLL~p~~~~l~~l~~~yl~~~~~k~~~~~~~~~~~l~~~~~~y~a~~a~~l 161 (192)
T cd06147 82 FHGADSDIIWLQRDFGLYVVNLFDTGQAARVLNLPRHSLAYLLQKYCNVDADKKYQLADWRIRPLPEEMIKYAREDTHYL 161 (192)
T ss_pred EechHHHHHHHHHHhCCCcCchHHHHHHHHHhCCCcccHHHHHHHHhCCCcchhhhccccccCCCCHHHHHHHHhhHHHH
Confidence 99999999999448899887779999999999964569999999999887445456677988898999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC-CcchhHHHHH
Q psy15183 478 LYVYDCMKLDLSAAAHG-KQNLVLSTFT 504 (1973)
Q Consensus 478 l~L~d~L~~~L~e~g~~-~~~~l~~v~~ 504 (1973)
+.|++.|..+|+++... .+++++.|+.
T Consensus 162 ~~L~~~L~~~L~e~~~~~~~~~~~~~~~ 189 (192)
T cd06147 162 LYIYDRLRNELLERANALAPNLLESVLN 189 (192)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhhhh
Confidence 99999999999887532 2344554443
No 48
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins. Ribonuclease (RNase) D is a bacterial enzyme involved in the maturation of small stable RNAs and the 3' maturation of tRNA. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. In vivo, RNase D only becomes essential upon removal of other ribonucleases. Eukaryotic RNase D homologs include yeast Rrp6p, human PM/Scl-100, and the Drosophila melanogaster egalitarian protein.
Probab=99.73 E-value=2.1e-16 Score=175.34 Aligned_cols=171 Identities=36% Similarity=0.605 Sum_probs=142.2
Q ss_pred HHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHHHH
Q psy15183 1775 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQ 1854 (1973)
Q Consensus 1775 L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lq 1854 (1973)
+.++++.+...+.+++|+|+.+..++.+.++++|+++.+.+|+|++... .....|+++|+|+++.||+||+|.|.++|+
T Consensus 2 ~~~~~~~l~~~~~l~~~~e~~~~~~~~~~~~~i~l~~~~~~~~i~~~~~-~~~~~l~~ll~~~~i~kv~~d~K~~~~~L~ 80 (178)
T cd06142 2 LEDLCERLASAGVIAVDTEFMRLNTYYPRLCLIQISTGGEVYLIDPLAI-GDLSPLKELLADPNIVKVFHAAREDLELLK 80 (178)
T ss_pred HHHHHHHHhcCCeEEEECCccCCCcCCCceEEEEEeeCCCEEEEeCCCc-ccHHHHHHHHcCCCceEEEeccHHHHHHHH
Confidence 3445555555568999999877666678999999998855888875433 345668899999999999999999999999
Q ss_pred HhcCCcccccchHHHHHHHCCCC-CCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1855 KDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 1933 (1973)
Q Consensus 1855 r~~GI~l~nlfDT~lAayLL~~~-~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL 1933 (1973)
+.+|+...++|||++|+|+|+.. +++|+.++++|++..+.+....++|..+|++.+++.||+.||++++.|++.|.++|
T Consensus 81 ~~~gi~~~~~~D~~laayLl~p~~~~~l~~l~~~~l~~~~~~~~~~~~w~~~~l~~~~~~yaa~~a~~l~~L~~~l~~~L 160 (178)
T cd06142 81 RDFGILPQNLFDTQIAARLLGLGDSVGLAALVEELLGVELDKGEQRSDWSKRPLTDEQLEYAALDVRYLLPLYEKLKEEL 160 (178)
T ss_pred HHcCCCCCCcccHHHHHHHhCCCccccHHHHHHHHhCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77799955689999999999953 46999999999998865555778999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHH
Q psy15183 1934 SAAAHGKQNLVLSTF 1948 (1973)
Q Consensus 1934 ~e~~~g~~~Ll~~V~ 1948 (1973)
.+. ++.+++....
T Consensus 161 ~e~--~l~~L~~~~~ 173 (178)
T cd06142 161 EEE--GRLEWAEEEC 173 (178)
T ss_pred HHc--CcHHHHHHHH
Confidence 987 7888776543
No 49
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins. Yeast Rrp6p and its human homolog, the polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome.
Probab=99.72 E-value=3.1e-16 Score=177.07 Aligned_cols=188 Identities=62% Similarity=1.060 Sum_probs=152.6
Q ss_pred CCCeEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEe
Q psy15183 1763 DTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKV 1842 (1973)
Q Consensus 1763 ~~~~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV 1842 (1973)
++|+.+|++.+++..+++.+...+.+++++++.++.++.+.++++|+++.++.|+|+.+........|+++|+++++.||
T Consensus 2 ~~~~~~i~~~~~l~~~~~~l~~~~~l~~~~e~~~~~~~~~~~~~l~l~~~~~~~~i~~l~~~~~~~~L~~~L~~~~i~kv 81 (192)
T cd06147 2 ETPLTFVDTEEKLEELVEKLKNCKEIAVDLEHHSYRSYLGFTCLMQISTREEDYIVDTLKLRDDMHILNEVFTDPNILKV 81 (192)
T ss_pred CCCcEEECCHHHHHHHHHHHhcCCeEEEEeEecCCccCCCceEEEEEecCCCcEEEEecccccchHHHHHHhcCCCceEE
Confidence 57889997778888877767556689999987666666789999999988777777643333345568899999999999
Q ss_pred ecchHHHHHHHHHhcCCcccccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHH
Q psy15183 1843 FHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 1922 (1973)
Q Consensus 1843 ~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~L 1922 (1973)
+||+|.++.+|.+.+|+.+.++|||++|+|+|+..+++|+.|+++|++..+.|..+.++|..+|+..++..||+.+|+++
T Consensus 82 ~~d~K~~~~~L~~~~gi~~~~~fD~~laaYLL~p~~~~l~~l~~~yl~~~~~k~~~~~~~~~~~l~~~~~~y~a~~a~~l 161 (192)
T cd06147 82 FHGADSDIIWLQRDFGLYVVNLFDTGQAARVLNLPRHSLAYLLQKYCNVDADKKYQLADWRIRPLPEEMIKYAREDTHYL 161 (192)
T ss_pred EechHHHHHHHHHHhCCCcCchHHHHHHHHHhCCCcccHHHHHHHHhCCCcchhhhccccccCCCCHHHHHHHHhhHHHH
Confidence 99999999999746899988889999999999964569999999999876434455667887788999999999999999
Q ss_pred HHHHHHHHHHHHHhhcC-cHHHHHHHHHH
Q psy15183 1923 LYVYDCMKLDLSAAAHG-KQNLVLSTFTN 1950 (1973)
Q Consensus 1923 L~Lyd~L~~eL~e~~~g-~~~Ll~~V~~~ 1950 (1973)
+.|++.|+.+|+++.+. ..++++.|+.-
T Consensus 162 ~~L~~~L~~~L~e~~~~~~~~~~~~~~~~ 190 (192)
T cd06147 162 LYIYDRLRNELLERANALAPNLLESVLNC 190 (192)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 99999999999876443 24577776643
No 50
>smart00474 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proofreading domain present in DNA polymerase I, Werner syndrome helicase, RNase D and other enzymes
Probab=99.69 E-value=6.1e-16 Score=169.53 Aligned_cols=166 Identities=38% Similarity=0.584 Sum_probs=138.4
Q ss_pred EEeCCHHHHHHHHHHHh-cCCeEEEEeeeccCCccCCcEEEEEEEeCC-ceEEEEccCccccHHHHHHHHcCCCceeeec
Q psy15183 322 MMITEPEQVTQLVSELK-QQQEIAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 399 (1973)
Q Consensus 322 ~~Idt~e~L~~ll~~L~-~~~~IavDtE~~~~~s~~g~l~LIQIst~~-~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H 399 (1973)
.+|++.+++..+++.+. ....+++|+|+.+..++.+.++++|++..+ .+|+++.......+..|.++|+++.+.||+|
T Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~l~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~kv~~ 81 (172)
T smart00474 2 RVVTDSETLEELLEKLRAAGGEVALDTETTGLNSYSGKLVLIQISVTGEGAFIIDPLALGDDLEILKDLLEDETITKVGH 81 (172)
T ss_pred EEecCHHHHHHHHHHHHhcCCeEEEeccccCCccCCCCEEEEEEeEcCCceEEEEeccchhhHHHHHHHhcCCCceEEEe
Confidence 57888888888777776 566999999988777677899999999644 4566554333223556899999999999999
Q ss_pred chhHhHHHHHHHhCCcccceeehhhhhhhcCCC-C-ccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHH
Q psy15183 400 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-R-QSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 477 (1973)
Q Consensus 400 ~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~-~-~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~L 477 (1973)
|++.|+.+|+ .+|+.+.++|||++|+|+++.. + ++|+.++.+|++..+++..+.++|..+|+..+|+.||+.||+++
T Consensus 82 d~k~~~~~L~-~~gi~~~~~~D~~laayll~p~~~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ya~~~a~~~ 160 (172)
T smart00474 82 NAKFDLHVLA-RFGIELENIFDTMLAAYLLLGGPSKHGLATLLKEYLGVELDKEEQKSDWGARPLSEEQLQYAAEDADAL 160 (172)
T ss_pred chHHHHHHHH-HCCCcccchhHHHHHHHHHcCCCCcCCHHHHHHHHhCCCCCcccCccccccCCCCHHHHHHHHHHHHHH
Confidence 9999999996 4999998889999999998742 2 69999999999988766555678988999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy15183 478 LYVYDCMKLDL 488 (1973)
Q Consensus 478 l~L~d~L~~~L 488 (1973)
+.|++.|.++|
T Consensus 161 ~~L~~~l~~~l 171 (172)
T smart00474 161 LRLYEKLEKEL 171 (172)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 51
>smart00474 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proofreading domain present in DNA polymerase I, Werner syndrome helicase, RNase D and other enzymes
Probab=99.67 E-value=2.7e-15 Score=164.42 Aligned_cols=166 Identities=38% Similarity=0.596 Sum_probs=136.6
Q ss_pred EEeCCHHHHHHHHHHHh-cCceeEEEeeeccCCccCCceeEEEEEeCC-ceEEEEcCCchhhHHHHHHHHcCCCceEeec
Q psy15183 1767 MMITEPEQVTQLVSELK-QQQEIAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 1844 (1973)
Q Consensus 1767 ~~Idt~e~L~~ll~~L~-~a~~IavDlE~~~~~s~~g~v~LlQISt~~-~~~iiD~l~l~~~l~~L~~lLedp~I~KV~H 1844 (1973)
.+|++.+++..+++.+. ....+++|+|+.+...+.+.++++|++..+ ..|+++.......+..|.++|+++.+.||+|
T Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~l~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~kv~~ 81 (172)
T smart00474 2 RVVTDSETLEELLEKLRAAGGEVALDTETTGLNSYSGKLVLIQISVTGEGAFIIDPLALGDDLEILKDLLEDETITKVGH 81 (172)
T ss_pred EEecCHHHHHHHHHHHHhcCCeEEEeccccCCccCCCCEEEEEEeEcCCceEEEEeccchhhHHHHHHHhcCCCceEEEe
Confidence 46788888888777776 566899999987766667899999999644 4555544333333556889999999999999
Q ss_pred chHHHHHHHHHhcCCcccccchHHHHHHHCCCC--CCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHH
Q psy15183 1845 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 1922 (1973)
Q Consensus 1845 g~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~--~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~L 1922 (1973)
|+|.|+.+|++ +|+.+.++|||++|+|+|+.. .++|+.++..|++...++..+..+|..+|+...++.||+.||+++
T Consensus 82 d~k~~~~~L~~-~gi~~~~~~D~~laayll~p~~~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ya~~~a~~~ 160 (172)
T smart00474 82 NAKFDLHVLAR-FGIELENIFDTMLAAYLLLGGPSKHGLATLLKEYLGVELDKEEQKSDWGARPLSEEQLQYAAEDADAL 160 (172)
T ss_pred chHHHHHHHHH-CCCcccchhHHHHHHHHHcCCCCcCCHHHHHHHHhCCCCCcccCccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999985 999999999999999998742 269999999999987655445568977888999999999999999
Q ss_pred HHHHHHHHHHH
Q psy15183 1923 LYVYDCMKLDL 1933 (1973)
Q Consensus 1923 L~Lyd~L~~eL 1933 (1973)
+.|++.|.++|
T Consensus 161 ~~L~~~l~~~l 171 (172)
T smart00474 161 LRLYEKLEKEL 171 (172)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 52
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=99.60 E-value=2.3e-16 Score=156.75 Aligned_cols=85 Identities=24% Similarity=0.487 Sum_probs=79.0
Q ss_pred HHHHHhhhcCCCCCCcchhhhcC-hhHHhhhhhhhhHHHHHHHHHHhhccccCCCCccc----cccccchhhhhhhhHhh
Q psy15183 1550 IVKCTKTAQSFPSTHENSLLIAS-PNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLY----LEGQKDILTEANDKLLE 1624 (1973)
Q Consensus 1550 ~~~~~~~~~~lp~~~~~~~~~~~-p~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~d~~le 1624 (1973)
||++||+||+||+ .++.||.++ |+|++.++++++|||++|++||+.++..++...+. +|+.|+.|+|+||.|||
T Consensus 1 lv~~~raa~~Lp~-~D~~Fy~s~dp~f~~~ld~~s~rll~l~n~ll~~~~~~~~~~~~~~~~d~d~~~~~vvd~~D~LlE 79 (91)
T PF08066_consen 1 LVQTTRAANALPA-QDYDFYRSFDPEFAESLDEQSQRLLSLINSLLKSAGSKSNISSPDDVDDVDERWDSVVDVNDSLLE 79 (91)
T ss_pred CHHHHHHHHHccH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccHHHHHHHHHHHHHHHHH
Confidence 6899999999999 667777777 99999999999999999999999999988876654 89999999999999999
Q ss_pred hcChhhhhccC
Q psy15183 1625 SINTRIDVMAG 1635 (1973)
Q Consensus 1625 ~~~~~ld~~~g 1635 (1973)
|||+||||++|
T Consensus 80 k~D~~LDe~~g 90 (91)
T PF08066_consen 80 KADISLDELTG 90 (91)
T ss_pred HHhHHHHhHcC
Confidence 99999999998
No 53
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.59 E-value=7.6e-14 Score=162.42 Aligned_cols=209 Identities=16% Similarity=0.135 Sum_probs=162.6
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceecccccccccc---ccEEeecccCCcccCHHHHHH
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAV---RFQLKTQFDKNVVTHYDIQEQ 945 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~---~~~l~~Pi~~G~V~dwd~le~ 945 (1973)
..|=||+|+.++++-.-+.. --...||+|+.....+ ...-..+|+++..+-.. .....+|+.+|+|.|++..+.
T Consensus 7 ~diGIDLGTanTlV~~k~kg-IVl~ePSVVAi~~~~~--~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ 83 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG-IVLNEPSVVAIESEGK--TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTEL 83 (342)
T ss_pred ccceeeecccceEEEEcCce-EEecCceEEEEeecCC--CceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHH
Confidence 36889999999999555333 2345788888876411 22346899999876532 288899999999999999999
Q ss_pred HHHHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCC
Q psy15183 946 IFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGY 1022 (1973)
Q Consensus 946 i~~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~ 1022 (1973)
++.|..++..-+..-...-.++++.|.-.+...|+.+-|-+ +.-|...|++..++.+|++|.|.. ++-.+|||||.
T Consensus 84 ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGg 162 (342)
T COG1077 84 MLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGG 162 (342)
T ss_pred HHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCC
Confidence 99999865432221122446888999999999999998887 667889999999999999999983 56799999999
Q ss_pred CceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccc
Q psy15183 1023 QCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVAT 1086 (1973)
Q Consensus 1023 s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~ 1086 (1973)
++|.|.-+..|-++... .+.+||+.+++-+-+.++++|.- .+....+|+||...+++.+
T Consensus 163 GTTevaVISlggiv~~~--Sirv~GD~~De~Ii~yvr~~~nl---~IGe~taE~iK~eiG~a~~ 221 (342)
T COG1077 163 GTTEVAVISLGGIVSSS--SVRVGGDKMDEAIIVYVRKKYNL---LIGERTAEKIKIEIGSAYP 221 (342)
T ss_pred CceeEEEEEecCEEEEe--eEEEecchhhHHHHHHHHHHhCe---eecHHHHHHHHHHhccccc
Confidence 99999999877777544 34499999999999999988532 3455668899988887753
No 54
>PRK05755 DNA polymerase I; Provisional
Probab=99.58 E-value=4.5e-14 Score=191.86 Aligned_cols=183 Identities=21% Similarity=0.219 Sum_probs=152.1
Q ss_pred CCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCc-eEEEEccCcc-ccHHHHHHHHcCCCcee
Q psy15183 319 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLR-EDLEVLNEVLTDKNIVK 396 (1973)
Q Consensus 319 ~~~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~-~~lID~l~l~-~~l~~L~~lL~dp~I~K 396 (1973)
..|.+|++.++|.++++.+..+..+++|+|+.+.+++.+.++++|+++.++ .++|++..+. ..+..|.++|+++.+.|
T Consensus 294 ~~~~~I~~~~~L~~~l~~l~~~~~~a~DtEt~~l~~~~~~i~~i~ls~~~g~~~~ip~~~i~~~~l~~l~~~L~d~~v~k 373 (880)
T PRK05755 294 EDYETILDEEELEAWLAKLKAAGLFAFDTETTSLDPMQAELVGLSFAVEPGEAAYIPLDQLDREVLAALKPLLEDPAIKK 373 (880)
T ss_pred CceEEeCCHHHHHHHHHHhhccCeEEEEeccCCCCcccccEEEEEEEeCCCcEEEEecccccHHHHHHHHHHHhCCCCcE
Confidence 467889999999999999998899999999999999999999999999877 7777763332 35678999999999999
Q ss_pred eecchhHhHHHHHHHhCCcc-cceeehhhhhhhcCCCC-ccHHHHHHHHcCCCCCccc----ccccCCCCCCCchhHhHH
Q psy15183 397 VFHGADSDIKWLQKDFGLYV-VGMFDTHQACKFLPMPR-QSLAYLLKHYCDVDSDKTF----QLFDWRHRPLPEPAIQYA 470 (1973)
Q Consensus 397 V~H~ak~Dl~~L~r~~Gi~~-~nlFDT~lAA~lLg~~~-~sLa~Lv~~ylgv~ldK~~----q~sDW~~RPLs~eql~YA 470 (1973)
|+||+++|+.+|+ .+|+.+ .++|||++|+++++... +||+.|+++|+|.++.... ...+|..+|+ +.+..||
T Consensus 374 V~HNakfDl~~L~-~~gi~~~~~~~DT~iAa~Ll~~~~~~~L~~L~~~ylg~~~~~~~~~~gk~~~~~~~pl-e~~~~YA 451 (880)
T PRK05755 374 VGQNLKYDLHVLA-RYGIELRGIAFDTMLASYLLDPGRRHGLDSLAERYLGHKTISFEEVAGKQLTFAQVDL-EEAAEYA 451 (880)
T ss_pred EEeccHhHHHHHH-hCCCCcCCCcccHHHHHHHcCCCCCCCHHHHHHHHhCCCccchHHhcCCCCCccccCH-HHHHHHH
Confidence 9999999999995 578876 67999999999998643 8999999999998742211 1223445577 5789999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q psy15183 471 RTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRN 508 (1973)
Q Consensus 471 a~Da~~Ll~L~d~L~~~L~e~g~~~~~~l~~v~~e~e~ 508 (1973)
+.|+.+++.||..|..+|.+.+ .+.++|.+++.
T Consensus 452 a~Dv~~~~~L~~~L~~~L~~~~-----~l~~l~~eiE~ 484 (880)
T PRK05755 452 AEDADVTLRLHEVLKPKLLEEP-----GLLELYEEIEL 484 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHhhc
Confidence 9999999999999999998864 26678887663
No 55
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=99.55 E-value=7.4e-16 Score=153.16 Aligned_cols=83 Identities=24% Similarity=0.424 Sum_probs=74.8
Q ss_pred HHhhhhcccCCCCccccccccccCCCCCCc----cchHHHHHHHHHHHHhhcccCCCCCC----CccccccchhhhhhHH
Q psy15183 105 IVKCTKTAQSFPSTHENSLLIASPNYISGV----AGTSDKVMTLVDSLLKTQNISKSMSK----LYLEGQKDILTEANDK 176 (1973)
Q Consensus 105 ~~~~~~~~~~lp~~~~d~~f~~s~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~D~ 176 (1973)
||++||+||+||+ +||+||+|+| |+| +++++|||+++++||+++++.++... +++|+.|+.|+|+||.
T Consensus 1 lv~~~raa~~Lp~--~D~~Fy~s~d--p~f~~~ld~~s~rll~l~n~ll~~~~~~~~~~~~~~~~d~d~~~~~vvd~~D~ 76 (91)
T PF08066_consen 1 LVQTTRAANALPA--QDYDFYRSFD--PEFAESLDEQSQRLLSLINSLLKSAGSKSNISSPDDVDDVDERWDSVVDVNDS 76 (91)
T ss_pred CHHHHHHHHHccH--HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccHHHHHHHHHHHHHH
Confidence 5899999999995 8999999932 666 88999999999999999999888743 5799999999999999
Q ss_pred HHhhhchhhhhhcCC
Q psy15183 177 LLESINTRIDVMAGT 191 (1973)
Q Consensus 177 lle~~~~~ld~~~g~ 191 (1973)
||||||++|||++|.
T Consensus 77 LlEk~D~~LDe~~g~ 91 (91)
T PF08066_consen 77 LLEKADISLDELTGK 91 (91)
T ss_pred HHHHHhHHHHhHcCC
Confidence 999999999999983
No 56
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases. Bacillus stearothermophilus-like Polymerase I (Pol I), a subgroup of the family-A DNA polymerases, contains an inactive DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase region. The exonuclease-like domain of these proteins possess the same fold as the Klenow fragment (KF) of Escherichia coli Pol I, but does not contain the four critical metal-binding residues necessary for activity. The function of this domain is unknown. It might act as a spacer between the polymerase and the 5'-3' exonuclease domains. Some members of this subgroup, such as those from Bacillus sphaericus and Thermus aquaticus, are thermostable DNA polymerases.
Probab=99.53 E-value=1.2e-13 Score=153.72 Aligned_cols=162 Identities=20% Similarity=0.163 Sum_probs=131.5
Q ss_pred CCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeecchhHhHHHHHHHhCCccc-c
Q psy15183 340 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV-G 418 (1973)
Q Consensus 340 ~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~-n 418 (1973)
...++||+|..+..++.+.+++++++..++.|+|++-........|.++|+++++.||+||+|.|++.| ..+|+.+. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~i~l~~~~~~~~i~~~~~~~~~~~l~~~l~~~~~~ki~~d~K~~~~~l-~~~gi~~~~~ 81 (178)
T cd06140 3 ADEVALYVELLGENYHTADIIGLALANGGGAYYIPLELALLDLAALKEWLEDEKIPKVGHDAKRAYVAL-KRHGIELAGV 81 (178)
T ss_pred CCceEEEEEEcCCCcceeeEEEEEEEeCCcEEEEeccchHHHHHHHHHHHhCCCCceeccchhHHHHHH-HHCCCcCCCc
Confidence 356899999998888889999999998777777763211013455889999999999999999999999 57899875 5
Q ss_pred eeehhhhhhhcCCCC--ccHHHHHHHHcCCCCCcccccccCC---CCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 419 MFDTHQACKFLPMPR--QSLAYLLKHYCDVDSDKTFQLFDWR---HRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 419 lFDT~lAA~lLg~~~--~sLa~Lv~~ylgv~ldK~~q~sDW~---~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
+|||++|+|+|+..+ +++..|+.+|++.++.+..+..+|. .++....+..||+.|+.+++.|++.|..+|.+.+
T Consensus 82 ~fDt~laaYLL~p~~~~~~l~~l~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~a~~l~~l~~~l~~~L~~~~- 160 (178)
T cd06140 82 AFDTMLAAYLLDPTRSSYDLADLAKRYLGRELPSDEEVYGKGAKFAVPDEEVLAEHLARKAAAIARLAPKLEEELEENE- 160 (178)
T ss_pred chhHHHHHHHcCCCCCCCCHHHHHHHHcCCCCcchHHhcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 699999999999643 7999999999999876544455663 2444566778999999999999999999999876
Q ss_pred CCcchhHHHHHHHHH
Q psy15183 494 GKQNLVLSTFTNSRN 508 (1973)
Q Consensus 494 ~~~~~l~~v~~e~e~ 508 (1973)
+..+|+++|-
T Consensus 161 -----l~~L~~~iE~ 170 (178)
T cd06140 161 -----QLELYYEVEL 170 (178)
T ss_pred -----HHHHHHHHHh
Confidence 6779998873
No 57
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins. DEDDy exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. They contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of a specific YX(3)D pattern at ExoIII. The four conserved acidic residues serve as ligands for the two metal ions required for catalysis. This family of DEDDy exonucleases includes the proofreading domains of family A DNA polymerases, as well as RNases such as RNase D and yeast Rrp6p. The Egalitarian (Egl) and Bacillus-like DNA Polymerase I subfamilies do not possess a completely conserved YX(3)D pattern at the ExoIII motif. In addition, the Bacillus-like DNA polymerase I subfamily has inactive 3'-5' exonucle
Probab=99.50 E-value=1.4e-13 Score=148.36 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=115.1
Q ss_pred eEEEEeeeccCCccCCcEEEEEEEeCCc-eEEEEccCccccHHHHHHHHcCCCceeeecchhHhHHHHHHHhCCcc-cce
Q psy15183 342 EIAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV-VGM 419 (1973)
Q Consensus 342 ~IavDtE~~~~~s~~g~l~LIQIst~~~-~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~-~nl 419 (1973)
.+++|+|+.+..++.+.++++|++++++ +|+|++.........|.++|+|+++.||+||++.|+.+| +..|+.. +++
T Consensus 1 ~~~~~~e~~~~~~~~~~~~~l~l~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~~~kv~~d~K~~~~~L-~~~~~~~~~~~ 79 (150)
T cd09018 1 VFAFDTETDSLDNISANLVLIQLAIEPGVAALIPVAHDYLALELLKPLLEDEKALKVGQNLKYDRGIL-LNYFIELRGIA 79 (150)
T ss_pred CEEEEeecCCCCCCCceEEEEEEEcCCCcEEEEEcCCcccCHHHHHHHhcCCCCceeeecHHHHHHHH-HHcCCccCCcc
Confidence 3789998877776678999999998755 788875432113567999999999999999999999999 4556554 567
Q ss_pred eehhhhhhhcCCC--CccHHHHHHHHcCCCCCcccccc--cCCCCCCCchhHhHHHHhHHHHHHHHHHHH
Q psy15183 420 FDTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLF--DWRHRPLPEPAIQYARTDTHYLLYVYDCMK 485 (1973)
Q Consensus 420 FDT~lAA~lLg~~--~~sLa~Lv~~ylgv~ldK~~q~s--DW~~RPLs~eql~YAa~Da~~Ll~L~d~L~ 485 (1973)
|||++|+|+|+.. +.+|+.|+.+|++..+.+..+.. +|..+|++.+|+.||+.|+.+++.|++.|.
T Consensus 80 ~D~~laayLl~p~~~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ya~~~a~~l~~L~~~l~ 149 (150)
T cd09018 80 FDTMLEAYILNSVAGRWDMDSLVERWLGHKLIKFESIAGKLWFNQPLTEEQGRYAAEDADVTLQIHLKLW 149 (150)
T ss_pred hhHHHHHHHhCCCCCCCCHHHHHHHHhCCCcccHHHhcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999853 47999999999998855422222 386688899999999999999999999874
No 58
>cd00007 35EXOc 3'-5' exonuclease. The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).
Probab=99.50 E-value=1.8e-13 Score=147.31 Aligned_cols=146 Identities=33% Similarity=0.387 Sum_probs=116.0
Q ss_pred eEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccC-ccccHHHHHHHHcCCCceeeecchhHhHHHHHHHhCCccccee
Q psy15183 342 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 420 (1973)
Q Consensus 342 ~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~-l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlF 420 (1973)
.+++|+|+.+...+.+.++++|+++.++.+++.... .......|.++|+++.+.||+||+++|+.+|.+.++..+.++|
T Consensus 2 ~l~~d~e~~~~~~~~~~i~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~v~~~~k~d~~~L~~~~~~~~~~~~ 81 (155)
T cd00007 2 EVAFDTETTGLNYHRGKLVGIQIATAGEAAYIPDELELEEDLEALKELLEDEDITKVGHDAKFDLVVLARDGIELPGNIF 81 (155)
T ss_pred ceEEEEecCCCCcCCCeEEEEEEEECCcEEEEEcCCCHHHHHHHHHHHHcCCCCcEEeccHHHHHHHHHHCCCCCCCCcc
Confidence 579999987776667899999999864355543221 1234456889999999999999999999999655544567889
Q ss_pred ehhhhhhhcCCC--CccHHHHHHHHcCCCCCcccccccCC----CCCCCchhHhHHHHhHHHHHHHHHHHHHH
Q psy15183 421 DTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLFDWR----HRPLPEPAIQYARTDTHYLLYVYDCMKLD 487 (1973)
Q Consensus 421 DT~lAA~lLg~~--~~sLa~Lv~~ylgv~ldK~~q~sDW~----~RPLs~eql~YAa~Da~~Ll~L~d~L~~~ 487 (1973)
||++|+|+++.. +++|+.|+++|++..+.+..+..+|. .+|++.+|..||+.|+++++.|++.|.++
T Consensus 82 D~~~~ayll~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~da~~~~~l~~~l~~~ 154 (155)
T cd00007 82 DTMLAAYLLNPGEGSHSLDDLAKEYLGIELDKDEQIYGKGAKTFARPLSEELLEYAAEDADALLRLYEKLLEE 154 (155)
T ss_pred cHHHHHHHhCCCCCcCCHHHHHHHHcCCCCccHHHHhcCCCCccccCCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 999999999853 47999999999998765433455553 57889999999999999999999999765
No 59
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional
Probab=99.50 E-value=2.7e-13 Score=175.68 Aligned_cols=142 Identities=20% Similarity=0.170 Sum_probs=128.0
Q ss_pred CcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeec
Q psy15183 320 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 399 (1973)
Q Consensus 320 ~~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H 399 (1973)
.+.+|++.++|..++..+..++.+++|+|+.+.++ .+||+|++.++..|+||+++. +.+ +
T Consensus 2 ~~~~I~~~~~l~~~~~~l~~~~~~a~DtEf~r~~t---~l~liQ~~~~~~~~liDpl~~---l~~---~----------- 61 (553)
T PRK14975 2 DMKVILAPEELGAALERLSPAGVVAGDTETTGDDA---AAAAAQEGEEEPRWVWASTAA---LYP---R----------- 61 (553)
T ss_pred CceEEeccchhHHHHHHhccCCceeCCccccCCcc---hhheeeecCCCceEEECchHH---hHH---H-----------
Confidence 46789999999999999999999999999998877 899999999999999998752 221 1
Q ss_pred chhHhHHHHHHHhCCcccceeehhhhhhhcCCC----CccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHH
Q psy15183 400 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP----RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 475 (1973)
Q Consensus 400 ~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~----~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~ 475 (1973)
| ..+|+.+.++||||+|+|+||.+ +++|+.|+.+|+++.++|..+.+||. ||++++|+.||+.|+.
T Consensus 62 --------L-~~~Gv~~~~~fDT~LAa~lL~~~~~~~~~~l~~la~~~l~~~l~k~~~~sdw~-rpls~~q~~YAa~Dv~ 131 (553)
T PRK14975 62 --------L-LAAGVRVERCHDLMLASQLLLGSEGRAGSSLSAAAARALGEGLDKPPQTSALS-DPPDEEQLLYAAADAD 131 (553)
T ss_pred --------H-HHCCCccCCCchHHHHHHHcCCCCCcCCCCHHHHHHHHhCCCCCChhhhcccc-ccchHHHHHHHHHHhH
Confidence 4 46699988999999999999954 58999999999999999999999996 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy15183 476 YLLYVYDCMKLDLSAA 491 (1973)
Q Consensus 476 ~Ll~L~d~L~~~L~e~ 491 (1973)
+++.||+.|..+|.+.
T Consensus 132 ~l~~L~~~L~~qL~~~ 147 (553)
T PRK14975 132 VLLELYAVLADQLNRI 147 (553)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999876
No 60
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=99.50 E-value=4.4e-15 Score=142.36 Aligned_cols=84 Identities=33% Similarity=0.477 Sum_probs=72.9
Q ss_pred ccccccccceeHHHHhhcCCceeec-ccCCCCccccccccccccccccccccceEEEEEeceEEeecc------eE-Eee
Q psy15183 1453 LSENFHDFAVTQSDYQEKGGEFFRV-HPCSNNKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFREVA------EI-ARV 1524 (1973)
Q Consensus 1453 sl~sf~~~~ITreeY~E~G~~il~r-k~~~n~~V~~~~~~k~~~~~~~~~~d~vw~f~~~~~~~~~~~------~~-~~~ 1524 (1973)
.++.+....|+++..+.....|++. -..++.+|+++++|| |+|+||+|||+||||+++|+.|+.++ +. +.+
T Consensus 21 lD~lis~g~isp~lam~vLetFDksv~e~l~~~v~s~ltfK-G~lDtY~fcD~VWtFi~kn~~~s~~n~~~~a~e~~i~~ 99 (113)
T COG5123 21 LDELISAGVISPNLAMHVLETFDKSVPEVLNKSVTSSLTFK-GKLDTYNFCDGVWTFITKNFVMSLNNEYFNAGEVNIVA 99 (113)
T ss_pred HHHHHhcCCcCHHHHHHHHHHhhhHHHHHHHhhhheeeEEe-ecccccccccceeEEEecCeEEEeccccccccccceEe
Confidence 3466778899999999999999777 456699999999999 99999999999999999999999987 43 777
Q ss_pred CcEEEEEcCCCCC
Q psy15183 1525 NKLKIVACDELSK 1537 (1973)
Q Consensus 1525 ~~~kivac~~~s~ 1537 (1973)
+++.||||.++..
T Consensus 100 ~k~rIvaca~r~s 112 (113)
T COG5123 100 CKARIVACAGRRS 112 (113)
T ss_pred eeeeEEeeccccC
Confidence 8888999988753
No 61
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases. Bacillus stearothermophilus-like Polymerase I (Pol I), a subgroup of the family-A DNA polymerases, contains an inactive DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase region. The exonuclease-like domain of these proteins possess the same fold as the Klenow fragment (KF) of Escherichia coli Pol I, but does not contain the four critical metal-binding residues necessary for activity. The function of this domain is unknown. It might act as a spacer between the polymerase and the 5'-3' exonuclease domains. Some members of this subgroup, such as those from Bacillus sphaericus and Thermus aquaticus, are thermostable DNA polymerases.
Probab=99.48 E-value=7.5e-13 Score=147.43 Aligned_cols=160 Identities=20% Similarity=0.174 Sum_probs=127.0
Q ss_pred CceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHHHHHhcCCcccc-
Q psy15183 1785 QQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG- 1863 (1973)
Q Consensus 1785 a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~n- 1863 (1973)
.+.++|++|..+..++.+.++++++++.++.|+++..........|.++|+++++.|++||+|.|++.|. .+|+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~i~l~~~~~~~~i~~~~~~~~~~~l~~~l~~~~~~ki~~d~K~~~~~l~-~~gi~~~~~ 81 (178)
T cd06140 3 ADEVALYVELLGENYHTADIIGLALANGGGAYYIPLELALLDLAALKEWLEDEKIPKVGHDAKRAYVALK-RHGIELAGV 81 (178)
T ss_pred CCceEEEEEEcCCCcceeeEEEEEEEeCCcEEEEeccchHHHHHHHHHHHhCCCCceeccchhHHHHHHH-HCCCcCCCc
Confidence 3567899998877777889999999987666666532110134558899999999999999999999998 58998875
Q ss_pred cchHHHHHHHCCCC--CCcHHHHHHHHcCCCCCcccccccCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15183 1864 MFDTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLFDWR---HRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 1938 (1973)
Q Consensus 1864 lfDT~lAayLL~~~--~~sLa~La~~yLg~~l~K~~q~sdW~---~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~~~ 1938 (1973)
+|||++|+|+|+.. +++++.++.+|++.++.+..+.++|+ .++....+..|++.||.+++.|++.|+.+|++.
T Consensus 82 ~fDt~laaYLL~p~~~~~~l~~l~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~a~~l~~l~~~l~~~L~~~-- 159 (178)
T cd06140 82 AFDTMLAAYLLDPTRSSYDLADLAKRYLGRELPSDEEVYGKGAKFAVPDEEVLAEHLARKAAAIARLAPKLEEELEEN-- 159 (178)
T ss_pred chhHHHHHHHcCCCCCCCCHHHHHHHHcCCCCcchHHhcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 69999999999954 37999999999998865544455553 234456677899999999999999999999877
Q ss_pred CcHHHHHHH
Q psy15183 1939 GKQNLVLST 1947 (1973)
Q Consensus 1939 g~~~Ll~~V 1947 (1973)
++..+|+++
T Consensus 160 ~l~~L~~~i 168 (178)
T cd06140 160 EQLELYYEV 168 (178)
T ss_pred HHHHHHHHH
Confidence 777777654
No 62
>cd00007 35EXOc 3'-5' exonuclease. The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).
Probab=99.47 E-value=6.9e-13 Score=142.75 Aligned_cols=146 Identities=33% Similarity=0.387 Sum_probs=113.9
Q ss_pred eeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCC-chhhHHHHHHHHcCCCceEeecchHHHHHHHHHhcCCcccccc
Q psy15183 1787 EIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 1865 (1973)
Q Consensus 1787 ~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~-l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlf 1865 (1973)
.+++|+|+.+...+.+.++++|+++.++.+++.... .......|.++|+++.+.||+||+++|+.+|.+.++....++|
T Consensus 2 ~l~~d~e~~~~~~~~~~i~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~v~~~~k~d~~~L~~~~~~~~~~~~ 81 (155)
T cd00007 2 EVAFDTETTGLNYHRGKLVGIQIATAGEAAYIPDELELEEDLEALKELLEDEDITKVGHDAKFDLVVLARDGIELPGNIF 81 (155)
T ss_pred ceEEEEecCCCCcCCCeEEEEEEEECCcEEEEEcCCCHHHHHHHHHHHHcCCCCcEEeccHHHHHHHHHHCCCCCCCCcc
Confidence 579999987766567899999999864355443222 2234556889999999999999999999999854333345689
Q ss_pred hHHHHHHHCCCC--CCcHHHHHHHHcCCCCCcccccccCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1866 DTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLFDWR----HRPLPEPAIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1866 DT~lAayLL~~~--~~sLa~La~~yLg~~l~K~~q~sdW~----~RPLs~eqi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
||++|+|+++.. +++|+.|+++|++....+..+..+|+ .++++..+..||+.|+++++.|++.|+++
T Consensus 82 D~~~~ayll~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~da~~~~~l~~~l~~~ 154 (155)
T cd00007 82 DTMLAAYLLNPGEGSHSLDDLAKEYLGIELDKDEQIYGKGAKTFARPLSEELLEYAAEDADALLRLYEKLLEE 154 (155)
T ss_pred cHHHHHHHhCCCCCcCCHHHHHHHHcCCCCccHHHHhcCCCCccccCCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 999999999853 46999999999998754433345553 57889999999999999999999999765
No 63
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins. DEDDy exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. They contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of a specific YX(3)D pattern at ExoIII. The four conserved acidic residues serve as ligands for the two metal ions required for catalysis. This family of DEDDy exonucleases includes the proofreading domains of family A DNA polymerases, as well as RNases such as RNase D and yeast Rrp6p. The Egalitarian (Egl) and Bacillus-like DNA Polymerase I subfamilies do not possess a completely conserved YX(3)D pattern at the ExoIII motif. In addition, the Bacillus-like DNA polymerase I subfamily has inactive 3'-5' exonucle
Probab=99.46 E-value=6.5e-13 Score=143.10 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=114.0
Q ss_pred eeEEEeeeccCCccCCceeEEEEEeCCc-eEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHHHHHhcCCccc-cc
Q psy15183 1787 EIAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV-GM 1864 (1973)
Q Consensus 1787 ~IavDlE~~~~~s~~g~v~LlQISt~~~-~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~-nl 1864 (1973)
.+++|+|+.+..++.+.++++|+++.++ .|+++..........|.++|+|+++.||+||+|.|+.+|. ..|+... ++
T Consensus 1 ~~~~~~e~~~~~~~~~~~~~l~l~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~~~kv~~d~K~~~~~L~-~~~~~~~~~~ 79 (150)
T cd09018 1 VFAFDTETDSLDNISANLVLIQLAIEPGVAALIPVAHDYLALELLKPLLEDEKALKVGQNLKYDRGILL-NYFIELRGIA 79 (150)
T ss_pred CEEEEeecCCCCCCCceEEEEEEEcCCCcEEEEEcCCcccCHHHHHHHhcCCCCceeeecHHHHHHHHH-HcCCccCCcc
Confidence 3789998877666678999999998755 7777643321135668899999999999999999999998 4677665 57
Q ss_pred chHHHHHHHCCCC--CCcHHHHHHHHcCCCCCcccccc--cCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1865 FDTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLF--DWRHRPLPEPAIQYARTDTHYLLYVYDCMK 1930 (1973)
Q Consensus 1865 fDT~lAayLL~~~--~~sLa~La~~yLg~~l~K~~q~s--dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~ 1930 (1973)
|||++|+|+|+.. +++|+.|+++||+..+.+..+.. +|..+++..+|+.||+.|+.+++.|++.|.
T Consensus 80 ~D~~laayLl~p~~~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ya~~~a~~l~~L~~~l~ 149 (150)
T cd09018 80 FDTMLEAYILNSVAGRWDMDSLVERWLGHKLIKFESIAGKLWFNQPLTEEQGRYAAEDADVTLQIHLKLW 149 (150)
T ss_pred hhHHHHHHHhCCCCCCCCHHHHHHHHhCCCcccHHHhcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999953 46999999999998754422222 385578899999999999999999999874
No 64
>PRK05755 DNA polymerase I; Provisional
Probab=99.45 E-value=2.2e-12 Score=175.58 Aligned_cols=180 Identities=22% Similarity=0.227 Sum_probs=144.7
Q ss_pred CCeEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCc-eEEEEcCCch-hhHHHHHHHHcCCCceE
Q psy15183 1764 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLR-EDLEVLNEVLTDKNIVK 1841 (1973)
Q Consensus 1764 ~~~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~-~~iiD~l~l~-~~l~~L~~lLedp~I~K 1841 (1973)
..+.+|++.+++.++++.+..+..+++|+|+.+.+++.+.++++|+++.++ .++++...+. ..+..|.++|+++.+.|
T Consensus 294 ~~~~~I~~~~~L~~~l~~l~~~~~~a~DtEt~~l~~~~~~i~~i~ls~~~g~~~~ip~~~i~~~~l~~l~~~L~d~~v~k 373 (880)
T PRK05755 294 EDYETILDEEELEAWLAKLKAAGLFAFDTETTSLDPMQAELVGLSFAVEPGEAAYIPLDQLDREVLAALKPLLEDPAIKK 373 (880)
T ss_pred CceEEeCCHHHHHHHHHHhhccCeEEEEeccCCCCcccccEEEEEEEeCCCcEEEEecccccHHHHHHHHHHHhCCCCcE
Confidence 357789999999999999988899999999999888999999999998877 6666653322 35678899999999999
Q ss_pred eecchHHHHHHHHHhcCCccc-ccchHHHHHHHCCCC-CCcHHHHHHHHcCCCCCccc----ccccCCCCCCCHHHHHHH
Q psy15183 1842 VFHGADSDIKWLQKDFGLYVV-GMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTF----QLFDWRHRPLPEPAIQYA 1915 (1973)
Q Consensus 1842 V~Hg~K~Di~~Lqr~~GI~l~-nlfDT~lAayLL~~~-~~sLa~La~~yLg~~l~K~~----q~sdW~~RPLs~eqi~YA 1915 (1973)
|+||+++|+.+|. .+|+.+. ++|||++|+|+++.. .++|+.|+++|+|.++.... ...+|...|+ +.+..||
T Consensus 374 V~HNakfDl~~L~-~~gi~~~~~~~DT~iAa~Ll~~~~~~~L~~L~~~ylg~~~~~~~~~~gk~~~~~~~pl-e~~~~YA 451 (880)
T PRK05755 374 VGQNLKYDLHVLA-RYGIELRGIAFDTMLASYLLDPGRRHGLDSLAERYLGHKTISFEEVAGKQLTFAQVDL-EEAAEYA 451 (880)
T ss_pred EEeccHhHHHHHH-hCCCCcCCCcccHHHHHHHcCCCCCCCHHHHHHHHhCCCccchHHhcCCCCCccccCH-HHHHHHH
Confidence 9999999999998 4798874 589999999999854 38999999999997742211 1123444466 5788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHH
Q psy15183 1916 RTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 1946 (1973)
Q Consensus 1916 a~DA~~LL~Lyd~L~~eL~e~~~g~~~Ll~~ 1946 (1973)
+.|+.+++.||..|..+|.+. .+...++.+
T Consensus 452 a~Dv~~~~~L~~~L~~~L~~~-~~l~~l~~e 481 (880)
T PRK05755 452 AEDADVTLRLHEVLKPKLLEE-PGLLELYEE 481 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 999999999999999998763 234444443
No 65
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases. Escherichia coli-like Polymerase I (Pol I), a subgroup of family-A DNA polymerases, contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase domain. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The 3'-5' exonuclease domain of DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. E. coli DNA Pol I is involved in genome replication but is not the main replicating enzyme. It is also implicated in DNA repair.
Probab=99.35 E-value=1.4e-11 Score=138.48 Aligned_cols=163 Identities=23% Similarity=0.294 Sum_probs=127.3
Q ss_pred hcCCeEEEEeeeccCCccCCcEEEEEEEeCCc-eEEEEccC--------ccccHHHHHHHHcCCCceeeecchhHhHHHH
Q psy15183 338 KQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLK--------LREDLEVLNEVLTDKNIVKVFHGADSDIKWL 408 (1973)
Q Consensus 338 ~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~-~~lID~l~--------l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L 408 (1973)
.+...+++|+|..+.+++.+.++.++++..++ .++++... ....+..|.++|++..+.+|+||+++|+.+|
T Consensus 3 ~~~~~~a~d~e~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~hn~k~d~~~l 82 (193)
T cd06139 3 EKAKVFAFDTETTSLDPMQAELVGISFAVEPGEAYYIPLGHDYGGEQLPREEVLAALKPLLEDPSIKKVGQNLKFDLHVL 82 (193)
T ss_pred ccCCeEEEEeecCCCCcCCCeEEEEEEEcCCCCEEEEecCCCccccCCCHHHHHHHHHHHHhCCCCcEEeeccHHHHHHH
Confidence 34578999999988888889999999998765 66664321 1122345888999988899999999999999
Q ss_pred HHHhCCccc-ceeehhhhhhhcCCC--CccHHHHHHHHcCCCC-------CcccccccCCCCCCCchhHhHHHHhHHHHH
Q psy15183 409 QKDFGLYVV-GMFDTHQACKFLPMP--RQSLAYLLKHYCDVDS-------DKTFQLFDWRHRPLPEPAIQYARTDTHYLL 478 (1973)
Q Consensus 409 ~r~~Gi~~~-nlFDT~lAA~lLg~~--~~sLa~Lv~~ylgv~l-------dK~~q~sDW~~RPLs~eql~YAa~Da~~Ll 478 (1973)
+.+|+.+. .+|||++++|+++.. +++|+.++++|++... .|+.+..+|...|+ ..+..||+.|+.+++
T Consensus 83 -~~~gi~~~~~~~Dt~l~a~ll~p~~~~~~l~~l~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~ya~~d~~~~~ 160 (193)
T cd06139 83 -ANHGIELRGPAFDTMLASYLLNPGRRRHGLDDLAERYLGHKTISFEDLVGKGKKQITFDQVPL-EKAAEYAAEDADITL 160 (193)
T ss_pred -HHCCCCCCCCcccHHHHHHHhCCCCCCCCHHHHHHHHhCCCCccHHHHcCCCcCcCCccccCH-HHHHHHHHHHHHHHH
Confidence 67888764 579999999999853 5799999999998763 12223345654444 668899999999999
Q ss_pred HHHHHHHHHHHH-hcCCCcchhHHHHHHHHH
Q psy15183 479 YVYDCMKLDLSA-AAHGKQNLVLSTFTNSRN 508 (1973)
Q Consensus 479 ~L~d~L~~~L~e-~g~~~~~~l~~v~~e~e~ 508 (1973)
.|+..|..+|.+ .+ +.++|+++|.
T Consensus 161 ~l~~~l~~~l~~~~~------~~~l~~~iE~ 185 (193)
T cd06139 161 RLYELLKPKLKEEPG------LLELYEEIEM 185 (193)
T ss_pred HHHHHHHHHHhhhhh------HHHHHHHHhc
Confidence 999999999987 54 7788888763
No 66
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases. Escherichia coli-like Polymerase I (Pol I), a subgroup of family-A DNA polymerases, contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase domain. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The 3'-5' exonuclease domain of DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. E. coli DNA Pol I is involved in genome replication but is not the main replicating enzyme. It is also implicated in DNA repair.
Probab=99.31 E-value=4.7e-11 Score=134.28 Aligned_cols=161 Identities=25% Similarity=0.307 Sum_probs=123.5
Q ss_pred hcCceeEEEeeeccCCccCCceeEEEEEeCCc-eEEEEcCC--------chhhHHHHHHHHcCCCceEeecchHHHHHHH
Q psy15183 1783 KQQQEIAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLK--------LREDLEVLNEVLTDKNIVKVFHGADSDIKWL 1853 (1973)
Q Consensus 1783 ~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~-~~iiD~l~--------l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~L 1853 (1973)
.+.+.+++|+|+.++.++.+.++.++++..++ .++++... ....+..|..+|++..+.+|+||+++|+.+|
T Consensus 3 ~~~~~~a~d~e~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v~hn~k~d~~~l 82 (193)
T cd06139 3 EKAKVFAFDTETTSLDPMQAELVGISFAVEPGEAYYIPLGHDYGGEQLPREEVLAALKPLLEDPSIKKVGQNLKFDLHVL 82 (193)
T ss_pred ccCCeEEEEeecCCCCcCCCeEEEEEEEcCCCCEEEEecCCCccccCCCHHHHHHHHHHHHhCCCCcEEeeccHHHHHHH
Confidence 34577999999888877788999999997655 55554221 1223456888999988899999999999999
Q ss_pred HHhcCCcccc-cchHHHHHHHCCCC--CCcHHHHHHHHcCCCC-------CcccccccCCCCCCCHHHHHHHHHHHHHHH
Q psy15183 1854 QKDFGLYVVG-MFDTHQACKFLPMP--RQSLAYLLKHYCDVDS-------DKTFQLFDWRHRPLPEPAIQYARTDTHYLL 1923 (1973)
Q Consensus 1854 qr~~GI~l~n-lfDT~lAayLL~~~--~~sLa~La~~yLg~~l-------~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL 1923 (1973)
. .+|+.+.+ ++||++++|+++.. +++|+.++++|++... .|..+..+|...|+ ..+..||+.|+.+++
T Consensus 83 ~-~~gi~~~~~~~Dt~l~a~ll~p~~~~~~l~~l~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~ya~~d~~~~~ 160 (193)
T cd06139 83 A-NHGIELRGPAFDTMLASYLLNPGRRRHGLDDLAERYLGHKTISFEDLVGKGKKQITFDQVPL-EKAAEYAAEDADITL 160 (193)
T ss_pred H-HCCCCCCCCcccHHHHHHHhCCCCCCCCHHHHHHHHhCCCCccHHHHcCCCcCcCCccccCH-HHHHHHHHHHHHHHH
Confidence 8 58988764 79999999999843 5799999999998652 12223344543344 567899999999999
Q ss_pred HHHHHHHHHHHH-hhcCcHHHHHHH
Q psy15183 1924 YVYDCMKLDLSA-AAHGKQNLVLST 1947 (1973)
Q Consensus 1924 ~Lyd~L~~eL~e-~~~g~~~Ll~~V 1947 (1973)
.|+..|..+|.+ . ++.+++.++
T Consensus 161 ~l~~~l~~~l~~~~--~~~~l~~~i 183 (193)
T cd06139 161 RLYELLKPKLKEEP--GLLELYEEI 183 (193)
T ss_pred HHHHHHHHHHhhhh--hHHHHHHHH
Confidence 999999999987 5 566666554
No 67
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.28 E-value=2.4e-10 Score=133.72 Aligned_cols=120 Identities=11% Similarity=0.030 Sum_probs=101.7
Q ss_pred eecccCCcccCHHHHHHHHHHHHh----hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHh
Q psy15183 929 KTQFDKNVVTHYDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFS 1004 (1973)
Q Consensus 929 ~~Pi~~G~V~dwd~le~i~~~if~----~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS 1004 (1973)
..|+.+|.|.|++..+.+++++.+ +++.. -..++++.|.......|+.+.+.+ +.-|+.-+.+..+++++
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~-----~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aa 101 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIE-----LTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAA 101 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCCC-----cCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHH
Confidence 578999999999999999999993 45543 247999999988888888777554 66799999999999999
Q ss_pred hhhcCCCCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHH
Q psy15183 1005 YQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLL 1058 (1973)
Q Consensus 1005 ~ya~G~g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL 1058 (1973)
+.+.+. ...+|||+|+++|.++-+.+|.++. .+.+++||+++|+.+.+.+
T Consensus 102 a~~~~~--~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~ 151 (239)
T TIGR02529 102 AAVLQI--KNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAY 151 (239)
T ss_pred HHHhcC--CCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHh
Confidence 998877 6679999999999999899998885 5677899999998876554
No 68
>KOG2207|consensus
Probab=99.25 E-value=7.7e-12 Score=154.52 Aligned_cols=176 Identities=21% Similarity=0.271 Sum_probs=140.0
Q ss_pred CCCCCCCcEEeCCHHHHHHHH-HHHhcC-CeEEEEeeeccC-CccCCcEEEEEEEeCCceEEEEccCcccc----H-HHH
Q psy15183 314 LPLSDTPLMMITEPEQVTQLV-SELKQQ-QEIAIDLEYHNY-RSYQGYTCLMQISTRDKDYIVDTLKLRED----L-EVL 385 (1973)
Q Consensus 314 ~p~~~~~~~~Idt~e~L~~ll-~~L~~~-~~IavDtE~~~~-~s~~g~l~LIQIst~~~~~lID~l~l~~~----l-~~L 385 (1973)
.|....++.+|+++.++..++ +.+..+ -.||+|.||..+ .....++|++||+..+.+||||+.++... + ..+
T Consensus 385 ~~~~~~~i~~V~~e~El~~l~l~~l~~e~~yVGiDsEwkps~~v~dsk~~IlQif~~~~v~Lidc~~l~~~~se~w~~~~ 464 (617)
T KOG2207|consen 385 EPPWVESIGMVGNEKELRDLLLESLSEELRYVGIDSEWKPSKKVSDSKLAILQIFFKDCVYLIDCVKLENLASEIWHLLL 464 (617)
T ss_pred CCCcccceeeeCCHHHHHHHHHHHhhhcCEEEEEccccCcccCCChhHHHHHHHHhcCeEEEeehHHhhhchHHHHHHHH
Confidence 444457788999999999887 455555 689999999876 44467899999999999999999876422 2 356
Q ss_pred HHHHcCCCceeeecchhHhHHHHHHHhC-----Ccc---ccee-ehhhhhhhcC---------CCCccHHHHHHHHcCCC
Q psy15183 386 NEVLTDKNIVKVFHGADSDIKWLQKDFG-----LYV---VGMF-DTHQACKFLP---------MPRQSLAYLLKHYCDVD 447 (1973)
Q Consensus 386 ~~lL~dp~I~KV~H~ak~Dl~~L~r~~G-----i~~---~nlF-DT~lAA~lLg---------~~~~sLa~Lv~~ylgv~ 447 (1973)
..+|++++++|||++..+|++.|++..+ ..+ .+++ ++.++..+.+ ....+|++|....+|..
T Consensus 465 s~if~s~~i~kvGf~~~eDL~~l~~s~pa~~~q~ki~~~~l~~~~~kl~e~~~~~~~~i~n~~~~~~~L~~Lt~~llg~~ 544 (617)
T KOG2207|consen 465 SQIFESKSILKVGFSMREDLEVLEASSPALRFQMKIEGLQLVSCVLKLAENVIDLPLSIENLNEATKGLADLTDCLLGKK 544 (617)
T ss_pred HHHccCCceeeeecchhhhHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHhcccchhhhhcchhhhhhhhhHHHhhhh
Confidence 7799999999999999999999975333 222 2222 3444444332 22468999999999999
Q ss_pred CCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15183 448 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 489 (1973)
Q Consensus 448 ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~ 489 (1973)
++|..|++||..|||...|+.|||.|++.+..+|..+.....
T Consensus 545 lnKteqcsnWqcrpLr~nQi~yaalDa~~~~~ifkkv~~vv~ 586 (617)
T KOG2207|consen 545 LNKTEQCSNWQCRPLRRNQIYYAALDAVVLVEIFKKVCSVVE 586 (617)
T ss_pred cccccccchhhcCCchhhHHHHHHhcchhhHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999876655
No 69
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional
Probab=99.24 E-value=3.5e-11 Score=156.23 Aligned_cols=142 Identities=20% Similarity=0.178 Sum_probs=124.5
Q ss_pred CeEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeec
Q psy15183 1765 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 1844 (1973)
Q Consensus 1765 ~~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~H 1844 (1973)
.+.+|++.+++..++..+..++.+++|+|....++ .+|++|++..+..|+||++.. +.++
T Consensus 2 ~~~~I~~~~~l~~~~~~l~~~~~~a~DtEf~r~~t---~l~liQ~~~~~~~~liDpl~~------l~~~----------- 61 (553)
T PRK14975 2 DMKVILAPEELGAALERLSPAGVVAGDTETTGDDA---AAAAAQEGEEEPRWVWASTAA------LYPR----------- 61 (553)
T ss_pred CceEEeccchhHHHHHHhccCCceeCCccccCCcc---hhheeeecCCCceEEECchHH------hHHH-----------
Confidence 35689999999999999999999999999876555 899999999999999997642 1111
Q ss_pred chHHHHHHHHHhcCCcccccchHHHHHHHCCCC----CCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHH
Q psy15183 1845 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP----RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 1920 (1973)
Q Consensus 1845 g~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~----~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~ 1920 (1973)
|. .+|+.+.++|||++|+|+|+.. +++++.++.+||++.++|..+.+||. ||++++|+.||+.|+.
T Consensus 62 --------L~-~~Gv~~~~~fDT~LAa~lL~~~~~~~~~~l~~la~~~l~~~l~k~~~~sdw~-rpls~~q~~YAa~Dv~ 131 (553)
T PRK14975 62 --------LL-AAGVRVERCHDLMLASQLLLGSEGRAGSSLSAAAARALGEGLDKPPQTSALS-DPPDEEQLLYAAADAD 131 (553)
T ss_pred --------HH-HCCCccCCCchHHHHHHHcCCCCCcCCCCHHHHHHHHhCCCCCChhhhcccc-ccchHHHHHHHHHHhH
Confidence 44 4699988999999999999953 57999999999999999988899996 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy15183 1921 YLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1921 ~LL~Lyd~L~~eL~e~ 1936 (1973)
+++.||+.|..+|.+.
T Consensus 132 ~l~~L~~~L~~qL~~~ 147 (553)
T PRK14975 132 VLLELYAVLADQLNRI 147 (553)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999754
No 70
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.14 E-value=3e-09 Score=126.63 Aligned_cols=151 Identities=12% Similarity=0.016 Sum_probs=116.4
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHHHH
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIF 947 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i~ 947 (1973)
.-.++||+||.++|+=.+ +..+. + + -+| ...+.++.+|.|.|++.....+
T Consensus 24 ~~~~~iDiGSssi~~vv~-~~~~~-~----~--------------~~~----------~~~~~~vr~G~i~di~~a~~~i 73 (267)
T PRK15080 24 PLKVGVDLGTANIVLAVL-DEDGQ-P----V--------------AGA----------LEWADVVRDGIVVDFIGAVTIV 73 (267)
T ss_pred CEEEEEEccCceEEEEEE-cCCCC-E----E--------------EEE----------eccccccCCCEEeeHHHHHHHH
Confidence 346899999999998664 22222 1 1 111 2345788999999999999999
Q ss_pred HHHHh----hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCCC
Q psy15183 948 DYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQ 1023 (1973)
Q Consensus 948 ~~if~----~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~s 1023 (1973)
+++.+ .++... ..++++.|.......|..+. -..+.-|+.-..+..++.++.++.+. ..++|||||++
T Consensus 74 ~~~~~~ae~~~g~~i-----~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~--~~~~vvDIGgg 145 (267)
T PRK15080 74 RRLKATLEEKLGREL-----THAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGI--DNGAVVDIGGG 145 (267)
T ss_pred HHHHHHHHHHhCCCc-----CeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCC--CCcEEEEeCCC
Confidence 99885 346553 35777888887666777666 55688899988899999988888876 66899999999
Q ss_pred ceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHH
Q psy15183 1024 CTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLL 1058 (1973)
Q Consensus 1024 ~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL 1058 (1973)
+|.++-+.+|.++.. ..+++||+++|+.+.+.+
T Consensus 146 tt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l 178 (267)
T PRK15080 146 TTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAY 178 (267)
T ss_pred cEEEEEEECCeEEEE--ecccCchHHHHHHHHHHh
Confidence 999998999988754 567999999999887665
No 71
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=99.13 E-value=7.2e-11 Score=111.23 Aligned_cols=68 Identities=26% Similarity=0.432 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHH
Q psy15183 538 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 605 (1973)
Q Consensus 538 ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI 605 (1973)
|++++++|++||+++|++.|.|+++||+|..|.+||+.+|+|.++|.++.++.+..+++||++|+++|
T Consensus 1 q~~~~~~L~~~R~~~A~~~~~~~~~Il~~~~L~~ia~~~P~s~~~L~~i~g~~~~~~~~~g~~il~~I 68 (68)
T PF00570_consen 1 QLALLKALKEWREELAREEDVPPYRILSDEALLEIAKRLPTSIEELLQIPGMGKRKVRKYGDEILEII 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH--SSHHHHHTSTTCGHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCcCcccccCHHHHHHHHHhCCCCHHHHHHccCCCHHHHHHHHHHHHhhC
Confidence 68899999999999999999999999999999999999999999999999999999999999999987
No 72
>KOG2207|consensus
Probab=99.12 E-value=1.2e-10 Score=144.14 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=138.4
Q ss_pred CCCCCCeEEeCCHHHHHHHH-HHHhcC-ceeEEEeeeccC-CccCCceeEEEEEeCCceEEEEcCCchhh----H-HHHH
Q psy15183 1760 PLSDTPLMMITEPEQVTQLV-SELKQQ-QEIAIDLEYHNY-RSYQGYTCLMQISTRDKDYIVDTLKLRED----L-EVLN 1831 (1973)
Q Consensus 1760 ~~~~~~~~~Idt~e~L~~ll-~~L~~a-~~IavDlE~~~~-~s~~g~v~LlQISt~~~~~iiD~l~l~~~----l-~~L~ 1831 (1973)
|.....+.+|+++.++..++ +.+... -+||+|.||.++ .....++|++|++..+..|++|..++... + ..+.
T Consensus 386 ~~~~~~i~~V~~e~El~~l~l~~l~~e~~yVGiDsEwkps~~v~dsk~~IlQif~~~~v~Lidc~~l~~~~se~w~~~~s 465 (617)
T KOG2207|consen 386 PPWVESIGMVGNEKELRDLLLESLSEELRYVGIDSEWKPSKKVSDSKLAILQIFFKDCVYLIDCVKLENLASEIWHLLLS 465 (617)
T ss_pred CCcccceeeeCCHHHHHHHHHHHhhhcCEEEEEccccCcccCCChhHHHHHHHHhcCeEEEeehHHhhhchHHHHHHHHH
Confidence 33456788999999999887 455555 689999999765 34467899999999999999998775332 2 3567
Q ss_pred HHHcCCCceEeecchHHHHHHHHHh-----cCCccc---ccc-hHHHHHHHCC---------CCCCcHHHHHHHHcCCCC
Q psy15183 1832 EVLTDKNIVKVFHGADSDIKWLQKD-----FGLYVV---GMF-DTHQACKFLP---------MPRQSLAYLLKHYCDVDS 1893 (1973)
Q Consensus 1832 ~lLedp~I~KV~Hg~K~Di~~Lqr~-----~GI~l~---nlf-DT~lAayLL~---------~~~~sLa~La~~yLg~~l 1893 (1973)
.+|++++++|||++...|+..|++. +...+. +++ ++-++-.+.+ ....+|++|....+|..+
T Consensus 466 ~if~s~~i~kvGf~~~eDL~~l~~s~pa~~~q~ki~~~~l~~~~~kl~e~~~~~~~~i~n~~~~~~~L~~Lt~~llg~~l 545 (617)
T KOG2207|consen 466 QIFESKSILKVGFSMREDLEVLEASSPALRFQMKIEGLQLVSCVLKLAENVIDLPLSIENLNEATKGLADLTDCLLGKKL 545 (617)
T ss_pred HHccCCceeeeecchhhhHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHhcccchhhhhcchhhhhhhhhHHHhhhhc
Confidence 7999999999999999999999852 222222 232 4444444322 334589999999999999
Q ss_pred CcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1894 DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 1934 (1973)
Q Consensus 1894 ~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~ 1934 (1973)
+|..|+++|..|||...|+.|||.||+.+..+|..+.....
T Consensus 546 nKteqcsnWqcrpLr~nQi~yaalDa~~~~~ifkkv~~vv~ 586 (617)
T KOG2207|consen 546 NKTEQCSNWQCRPLRRNQIYYAALDAVVLVEIFKKVCSVVE 586 (617)
T ss_pred ccccccchhhcCCchhhHHHHHHhcchhhHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999876654
No 73
>smart00341 HRDC Helicase and RNase D C-terminal. Hypothetical role in nucleic acid binding. Mutations in the HRDC domain cause human disease.
Probab=99.12 E-value=2.1e-10 Score=111.67 Aligned_cols=78 Identities=29% Similarity=0.460 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHhcCC
Q psy15183 536 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSL 613 (1973)
Q Consensus 536 ~~ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~~~~ 613 (1973)
+.+++++++|+.||+++|++.|+|+++||+|.+|++||+.+|+|..+|.++.+.....+++|+..|+++|+.+.+.+.
T Consensus 2 ~~~~~~~~~L~~wR~~~A~~~~~~~~~I~~~~~L~~ia~~~P~~~~~L~~i~g~~~~~~~~~g~~~~~~i~~~~~~~~ 79 (81)
T smart00341 2 ERQLRLLRRLRQWRDEIARREDVPPYFVLPDETLIKMAAALPTNVSELLAIDGVGEEKARRYGKDLLAVIQEASDSPS 79 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCeEEECHHHHHHHHHHCCCCHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999987654
No 74
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]
Probab=99.08 E-value=8.7e-10 Score=139.59 Aligned_cols=181 Identities=20% Similarity=0.228 Sum_probs=138.2
Q ss_pred cEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccC---ccccHHHHHHHHcCCCceee
Q psy15183 321 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK---LREDLEVLNEVLTDKNIVKV 397 (1973)
Q Consensus 321 ~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~---l~~~l~~L~~lL~dp~I~KV 397 (1973)
+..+.+.+.+..++..+.....+++|+|+.+.+++.+.++.+.++..+..++|.... .-.....|++||+++.+.||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~a~~~et~~l~~~~~~lvg~s~~~~~~~~yi~~~~~~~~~~~~~~l~~~l~~~~~~kv 82 (593)
T COG0749 3 YGTITDLAVLNAWLTKLNAAANIAFDTETDGLDPHGADLVGLSVASEEEAAYIPLLHGPEQLNVLAALKPLLEDEGIKKV 82 (593)
T ss_pred chhhhHHHHHHHHHHHHhhcccceeeccccccCcccCCeeEEEeeccccceeEeeccchhhhhhHHHHHHHhhCcccchh
Confidence 344556677888888877776699999999999888888888888776544444332 11356789999999999999
Q ss_pred ecchhHhHHHHHHHhCCcccceeehhhhhhhcCCC--CccHHHHHHHHcCCCCCcccccccCCCCCCC------chhHhH
Q psy15183 398 FHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP------EPAIQY 469 (1973)
Q Consensus 398 ~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~--~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs------~eql~Y 469 (1973)
+||+|.|.+.| ..+|+..+..||||+|+|+++.+ .+++..|+++|++.+.-......+-...-++ +....|
T Consensus 83 ~~~~K~d~~~l-~~~Gi~~~~~~DtmlasYll~~~~~~~~~~~l~~r~l~~~~~~~~~i~~kg~~~~~~~~~~~~~~~~y 161 (593)
T COG0749 83 GQNLKYDYKVL-ANLGIEPGVAFDTMLASYLLNPGAGAHNLDDLAKRYLGLETITFEDIAGKGKKQLTFADVKLEKATEY 161 (593)
T ss_pred ccccchhHHHH-HHcCCcccchHHHHHHHhccCcCcCcCCHHHHHHHhcCCccchhHHhhccccccCccccchHHHHHHH
Confidence 99999999999 67886656789999999999844 5899999999998776433322221111011 344699
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q psy15183 470 ARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSR 507 (1973)
Q Consensus 470 Aa~Da~~Ll~L~d~L~~~L~e~g~~~~~~l~~v~~e~e 507 (1973)
++.|+..+++|+..|..+|.+.. -|..+|.++|
T Consensus 162 ~a~~a~~~~~L~~~l~~~l~~~~-----~L~~l~~~iE 194 (593)
T COG0749 162 AAEDADATLRLESILEPELLKTP-----VLLELYEEIE 194 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHh
Confidence 99999999999999999888765 3577888876
No 75
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]
Probab=99.07 E-value=1.5e-09 Score=137.64 Aligned_cols=168 Identities=21% Similarity=0.230 Sum_probs=127.2
Q ss_pred EeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCC---chhhHHHHHHHHcCCCceEeec
Q psy15183 1768 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLK---LREDLEVLNEVLTDKNIVKVFH 1844 (1973)
Q Consensus 1768 ~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~---l~~~l~~L~~lLedp~I~KV~H 1844 (1973)
.+.+.+.+..++..+...+.+++|+|+.+.++..+.++++.++..+..+++.... .-.....|++||+++.+.||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~a~~~et~~l~~~~~~lvg~s~~~~~~~~yi~~~~~~~~~~~~~~l~~~l~~~~~~kv~~ 84 (593)
T COG0749 5 TITDLAVLNAWLTKLNAAANIAFDTETDGLDPHGADLVGLSVASEEEAAYIPLLHGPEQLNVLAALKPLLEDEGIKKVGQ 84 (593)
T ss_pred hhhHHHHHHHHHHHHhhcccceeeccccccCcccCCeeEEEeeccccceeEeeccchhhhhhHHHHHHHhhCcccchhcc
Confidence 4455667778887777666699999999998888888888888776444443332 1124678999999999999999
Q ss_pred chHHHHHHHHHhcCCcccccchHHHHHHHCCCC--CCcHHHHHHHHcCCCCCcccccccCCCCCCC------HHHHHHHH
Q psy15183 1845 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP--RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP------EPAIQYAR 1916 (1973)
Q Consensus 1845 g~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~--~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs------~eqi~YAa 1916 (1973)
|+|.|.+.|+ .+|+.....||||+|+|+|+.. .++++.|+++|++.+.-......+-...-++ .....|++
T Consensus 85 ~~K~d~~~l~-~~Gi~~~~~~DtmlasYll~~~~~~~~~~~l~~r~l~~~~~~~~~i~~kg~~~~~~~~~~~~~~~~y~a 163 (593)
T COG0749 85 NLKYDYKVLA-NLGIEPGVAFDTMLASYLLNPGAGAHNLDDLAKRYLGLETITFEDIAGKGKKQLTFADVKLEKATEYAA 163 (593)
T ss_pred ccchhHHHHH-HcCCcccchHHHHHHHhccCcCcCcCCHHHHHHHhcCCccchhHHhhccccccCccccchHHHHHHHHH
Confidence 9999999999 5886634579999999999843 5899999999998776332222211111011 34459999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy15183 1917 TDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1917 ~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
.||.++++|+..|..+|.+.
T Consensus 164 ~~a~~~~~L~~~l~~~l~~~ 183 (593)
T COG0749 164 EDADATLRLESILEPELLKT 183 (593)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999888765
No 76
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=9.2e-09 Score=138.88 Aligned_cols=174 Identities=14% Similarity=0.055 Sum_probs=126.4
Q ss_pred eEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCC-c-eEEEEcC-----CchhhHHHHHHHHcCCC
Q psy15183 1766 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD-K-DYIVDTL-----KLREDLEVLNEVLTDKN 1838 (1973)
Q Consensus 1766 ~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~-~-~~iiD~l-----~l~~~l~~L~~lLedp~ 1838 (1973)
+..+.+.+++..+++. ...+.+++ .++.++.+.+.++.+++.+ + .|++... ........|+++|+|+.
T Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 378 (887)
T TIGR00593 304 AKESEEAAPLANPAEK-AEVGGFVL----ERLLDQLKKALALAFATENQSYVAYASEADGIPLLTILTDDKFARWLLNEQ 378 (887)
T ss_pred ceEeCCHHHHHHHHHh-CcCCeEEE----cCcccccCceeEEEEEecCCCceEEEecccchhhhhHHHHHHHHHHHhCCC
Confidence 4456667778887755 44446777 3444556778889999865 3 4444321 12223456899999999
Q ss_pred ceEeecchHHHHHHHHHhcCCcccc-cchHHHHHHHCCC-CCCcHHHHHHHHcCCCCCcccccccCCC--CCCC-HHHHH
Q psy15183 1839 IVKVFHGADSDIKWLQKDFGLYVVG-MFDTHQACKFLPM-PRQSLAYLLKHYCDVDSDKTFQLFDWRH--RPLP-EPAIQ 1913 (1973)
Q Consensus 1839 I~KV~Hg~K~Di~~Lqr~~GI~l~n-lfDT~lAayLL~~-~~~sLa~La~~yLg~~l~K~~q~sdW~~--RPLs-~eqi~ 1913 (1973)
+.||+||+|+|+++|. .+|+.+.+ +||||+|+|+|+. .+++|+.|+.+|++.......+...|.. ..++ +.+..
T Consensus 379 ~~~v~~n~K~d~~~l~-~~gi~~~~~~~Dt~la~yll~~~~~~~l~~la~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (887)
T TIGR00593 379 IKKIGHDAKFLMHLLK-REGIELGGVIFDTMLAAYLLDPAQVSTLDTLARRYLVEELILDEKIGGKLAKFAFPPLEEATE 457 (887)
T ss_pred CcEEEeeHHHHHHHHH-hCCCCCCCcchhHHHHHHHcCCCCCCCHHHHHHHHcCcccccHHHhccCCCCcccccHHHHHH
Confidence 9999999999999998 68999875 6999999999984 3469999999999976543222222211 1333 44568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH
Q psy15183 1914 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 1947 (1973)
Q Consensus 1914 YAa~DA~~LL~Lyd~L~~eL~e~~~g~~~Ll~~V 1947 (1973)
||+.||.++++||..|.++|.+. ++..++.++
T Consensus 458 ya~~d~~~~~~L~~~l~~~l~~~--~l~~l~~~i 489 (887)
T TIGR00593 458 YLARRAAATKRLAEELLKELDEN--KLLSLYREI 489 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHH
Confidence 99999999999999999999865 666776655
No 77
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=8.4e-09 Score=139.24 Aligned_cols=176 Identities=14% Similarity=0.060 Sum_probs=128.7
Q ss_pred cEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCC-c-eEEEEcc-----CccccHHHHHHHHcCCC
Q psy15183 321 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRD-K-DYIVDTL-----KLREDLEVLNEVLTDKN 393 (1973)
Q Consensus 321 ~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~-~-~~lID~l-----~l~~~l~~L~~lL~dp~ 393 (1973)
+..|.+.+++..+++. ...+.+++ .++.++...+..+.+++.+ + .|+++.. ........|.++|+|+.
T Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 378 (887)
T TIGR00593 304 AKESEEAAPLANPAEK-AEVGGFVL----ERLLDQLKKALALAFATENQSYVAYASEADGIPLLTILTDDKFARWLLNEQ 378 (887)
T ss_pred ceEeCCHHHHHHHHHh-CcCCeEEE----cCcccccCceeEEEEEecCCCceEEEecccchhhhhHHHHHHHHHHHhCCC
Confidence 4567677888887765 44456777 3444556778889999865 3 5554321 11122456899999999
Q ss_pred ceeeecchhHhHHHHHHHhCCccc-ceeehhhhhhhcCC-CCccHHHHHHHHcCCCCCcccccccCCC--CCCC-chhHh
Q psy15183 394 IVKVFHGADSDIKWLQKDFGLYVV-GMFDTHQACKFLPM-PRQSLAYLLKHYCDVDSDKTFQLFDWRH--RPLP-EPAIQ 468 (1973)
Q Consensus 394 I~KV~H~ak~Dl~~L~r~~Gi~~~-nlFDT~lAA~lLg~-~~~sLa~Lv~~ylgv~ldK~~q~sDW~~--RPLs-~eql~ 468 (1973)
+.||+||+|+|+.+| ..+|+.+. .+||||+|+|+|+. .+++|+.|+.+|++.......+...|.. ..++ +.+..
T Consensus 379 ~~~v~~n~K~d~~~l-~~~gi~~~~~~~Dt~la~yll~~~~~~~l~~la~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (887)
T TIGR00593 379 IKKIGHDAKFLMHLL-KREGIELGGVIFDTMLAAYLLDPAQVSTLDTLARRYLVEELILDEKIGGKLAKFAFPPLEEATE 457 (887)
T ss_pred CcEEEeeHHHHHHHH-HhCCCCCCCcchhHHHHHHHcCCCCCCCHHHHHHHHcCcccccHHHhccCCCCcccccHHHHHH
Confidence 999999999999999 67899875 56999999999984 3479999999999977544332222211 1232 34568
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q psy15183 469 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRN 508 (1973)
Q Consensus 469 YAa~Da~~Ll~L~d~L~~~L~e~g~~~~~~l~~v~~e~e~ 508 (1973)
||+.|+.+++.||..|.++|.+.+ +..+|.++|-
T Consensus 458 ya~~d~~~~~~L~~~l~~~l~~~~------l~~l~~~iE~ 491 (887)
T TIGR00593 458 YLARRAAATKRLAEELLKELDENK------LLSLYREIEL 491 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHH
Confidence 999999999999999999998765 6778877764
No 78
>CHL00094 dnaK heat shock protein 70
Probab=98.73 E-value=2.9e-07 Score=121.99 Aligned_cols=186 Identities=14% Similarity=0.083 Sum_probs=117.9
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC--C-ccccceecccccccccc---------------------
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG--K-KDGETQVGNDISNIEAV--------------------- 924 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~--~-~~~~~~vGdea~~~~~~--------------------- 924 (1973)
.+|=||+||.++++++..+..|. ++||--|....+.. . .+...++|+.|......
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~-ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPT-VIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEE-EEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 36889999999999998777775 34443332221110 0 01124566554321000
Q ss_pred ------ccE----------EeecccCCcccCHHHHHHHHHHHHh----hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHH
Q psy15183 925 ------RFQ----------LKTQFDKNVVTHYDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984 (1973)
Q Consensus 925 ------~~~----------l~~Pi~~G~V~dwd~le~i~~~if~----~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~E 984 (1973)
.+. +..+.....+..-+....++.++.. .++... ..+++|.|..+....|+.+.+
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v-----~~~VItVPa~f~~~qR~a~~~ 156 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETV-----TQAVITVPAYFNDSQRQATKD 156 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEEECCCCCHHHHHHHHH
Confidence 000 1111112223334555666666552 355433 368999999999999988876
Q ss_pred HHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEeecC--EE-ccCCcEEeeccHHHHHHHHHHHH
Q psy15183 985 LLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVING--CI-DASKAKRIDLGGFSVIHHLHKLL 1058 (1973)
Q Consensus 985 lLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~dG--~v-l~~si~rl~vGG~~lt~~L~~lL 1058 (1973)
.. +.-|+.-+.++.++.+|++++|.. ...-+|+|+|++++.|+-+.-| .. +..+....++||.+++..|.+.+
T Consensus 157 Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~ 235 (621)
T CHL00094 157 AG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWL 235 (621)
T ss_pred HH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHH
Confidence 64 778999999999999999988762 3578999999999999887533 21 11223346899999999999877
Q ss_pred hhh
Q psy15183 1059 QLK 1061 (1973)
Q Consensus 1059 ~~k 1061 (1973)
..+
T Consensus 236 ~~~ 238 (621)
T CHL00094 236 IKE 238 (621)
T ss_pred HHH
Confidence 544
No 79
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.73 E-value=2.9e-07 Score=122.48 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=77.5
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEee--cCEEc-c
Q psy15183 964 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVI--NGCID-A 1037 (1973)
Q Consensus 964 ~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~--dG~vl-~ 1037 (1973)
..++||.|.++....|+.+.+- .+.-|++-+.+..++.+|++++|.. +..-+|+|+|++++.|+-+. +|... .
T Consensus 175 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~ 253 (663)
T PTZ00400 175 KQAVITVPAYFNDSQRQATKDA-GKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVK 253 (663)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEE
Confidence 4799999999999999888664 4778999999999999999998762 46789999999999998663 55432 2
Q ss_pred CCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 1038 SKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1038 ~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
...--.++||.+++..|.+.+..+
T Consensus 254 a~~gd~~LGG~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 254 ATNGNTSLGGEDFDQRILNYLIAE 277 (663)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHH
Confidence 223345799999999998887544
No 80
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.64 E-value=4.7e-07 Score=119.63 Aligned_cols=180 Identities=16% Similarity=0.126 Sum_probs=114.7
Q ss_pred eEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceeccccccccccc-----cEE--------
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAVR-----FQL-------- 928 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~-----~~l-------- 928 (1973)
+|=||+||.++++++..+..|..+ +||+|+-... ...++|+.|....... +.+
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~------~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~ 75 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKN------GERLVGQPAKRQAVTNPENTIYSIKRFMGRRF 75 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC------CCEEECHHHHHhhhhCchhhhHHHHHHhCCCc
Confidence 467999999999999877767522 3455544321 1347777664321100 000
Q ss_pred --------eeccc----C--------CcccC-HHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHH
Q psy15183 929 --------KTQFD----K--------NVVTH-YDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMS 983 (1973)
Q Consensus 929 --------~~Pi~----~--------G~V~d-wd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ 983 (1973)
++|+. + |.... .+....++.++. .+++... ..++||.|..+....|+.+.
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v-----~~~VItVPa~f~~~qR~a~~ 150 (595)
T TIGR02350 76 DEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKV-----TEAVITVPAYFNDAQRQATK 150 (595)
T ss_pred hHHHHHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEEECCCCCHHHHHHHH
Confidence 11111 1 22112 233344454443 3455433 36999999999999998887
Q ss_pred HHHHHhcCCCeEeechhhHHhhhhcCCC----CceEEEEeeCCCceEEEEee--cCEE-ccCCcEEeeccHHHHHHHHHH
Q psy15183 984 ELLFECYQVPSVCYGIDSLFSYQYNGWE----GQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDLGGFSVIHHLHK 1056 (1973)
Q Consensus 984 ElLFE~~~vpav~~~~~sllS~ya~G~g----~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~rl~vGG~~lt~~L~~ 1056 (1973)
+. .+.-|++-+.+..++.+|++++|.. ..+-+|+|+|++++.|+-+. +|.. +..+.-..++||.+++..|.+
T Consensus 151 ~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 151 DA-GKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HH-HHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 64 4678999999999999998877541 46789999999999887763 3322 112222357999999999998
Q ss_pred HHhhh
Q psy15183 1057 LLQLK 1061 (1973)
Q Consensus 1057 lL~~k 1061 (1973)
.+..+
T Consensus 230 ~~~~~ 234 (595)
T TIGR02350 230 WLADE 234 (595)
T ss_pred HHHHH
Confidence 87544
No 81
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.63 E-value=1.3e-06 Score=116.44 Aligned_cols=181 Identities=15% Similarity=0.136 Sum_probs=118.5
Q ss_pred ceEEEEcCcceEEEEEeCCCCccE--------EEecceeeccCCCCCccccceecccccccccc----------------
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNL--------IFKNLIAKPRKERGKKDGETQVGNDISNIEAV---------------- 924 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~--------i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~---------------- 924 (1973)
.+|=||+|+.++.+++..+..|.. ..||+|+-... ...++|+.+......
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~------~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 113 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN------GDRLVGQIAKRQAVVNPENTFFSVKRFIGRK 113 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCC------CCEEECHHHHHhhhhCchhhhHHHHHhhCCC
Confidence 468899999999999987777752 23455544311 123566555321100
Q ss_pred -----------cc----------EEeecccCCcccCHHHHHHHHHHHHh----hcCcCCCCCCCCcEEEEeCCCCcHHHH
Q psy15183 925 -----------RF----------QLKTQFDKNVVTHYDIQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSR 979 (1973)
Q Consensus 925 -----------~~----------~l~~Pi~~G~V~dwd~le~i~~~if~----~L~i~~~~~~~~pVlltEp~~~p~~~R 979 (1973)
.+ .+..|.....+...+....++.++.. +++... ..++||.|..++...|
T Consensus 114 ~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v-----~~~VITVPa~f~~~qR 188 (673)
T PLN03184 114 MSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKV-----TKAVITVPAYFNDSQR 188 (673)
T ss_pred cchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEEECCCCCHHHH
Confidence 00 11111122233345555666666652 455332 4799999999999999
Q ss_pred HHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEee--cCEE-ccCCcEEeeccHHHHHHH
Q psy15183 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDLGGFSVIHH 1053 (1973)
Q Consensus 980 e~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~rl~vGG~~lt~~ 1053 (1973)
+.+.+. .+.-|+.-+.+..++.+|++++|.. ...-+|+|+|++++.|+-+. +|.. +..+.--.++||.+++..
T Consensus 189 ~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~ 267 (673)
T PLN03184 189 TATKDA-GRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 267 (673)
T ss_pred HHHHHH-HHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence 887664 4788999999999999999887651 45789999999999987764 3321 111222457999999999
Q ss_pred HHHHHhhh
Q psy15183 1054 LHKLLQLK 1061 (1973)
Q Consensus 1054 L~~lL~~k 1061 (1973)
|.+.+..+
T Consensus 268 L~~~~~~~ 275 (673)
T PLN03184 268 IVDWLASN 275 (673)
T ss_pred HHHHHHHH
Confidence 99887544
No 82
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases. The 3'-5' exonuclease domain of family-A DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-A DNA polymerases contain a DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-B DNA polymerases. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four invariant acidic residues that serve as ligands for the two metal ions required for catalysis. The Klenow fragment (KF) of Escherichia coli Pol I, the Thermus aquaticus (Taq) Pol I, and Bacillus stearothermophilus (BF) Pol I are examples of family-A DNA polymerases. They are involved in nucleotide excision repair and in the processing of Okazaki fragments that are generated during lagging strand synthesis. The N-terminal domains of BF Pol I and Taq Po
Probab=98.61 E-value=7.3e-07 Score=97.04 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=93.0
Q ss_pred EEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHHHHHhcCCcccc-cchHH
Q psy15183 1790 IDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG-MFDTH 1868 (1973)
Q Consensus 1790 vDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~n-lfDT~ 1868 (1973)
+.++..++.++.+.+.++.+++.++.|+++.-. ......|.++|++..+.|++||+|.+.++|. .+|+.+.+ .||||
T Consensus 6 ~~~~~~~~~~~~~~~~glal~~~~~~~yi~~~~-~~~~~~l~~~l~~~~~~ki~~d~K~~~~~l~-~~gi~l~~~~fD~~ 83 (151)
T cd06128 6 FGTETDSLDNISANLVGLAFAIEGVAAYIPVAH-DYALELLKPLLEDEKALKVGQNLKYDRVILA-NYGIELRGIAFDTM 83 (151)
T ss_pred EEecCCCCCcccCcEEEEEEEcCCCeEEEeCCC-CcCHHHHHHHHcCCCCCEEeeehHHHHHHHH-HCCCCCCCcchhHH
Confidence 334333333335677778888776666654211 0024568899999999999999999999997 68999886 59999
Q ss_pred HHHHHCCCC-C-CcHHHHHHHHcCCCCCcccccccCCC--CCC-CHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1869 QACKFLPMP-R-QSLAYLLKHYCDVDSDKTFQLFDWRH--RPL-PEPAIQYARTDTHYLLYVYDCMK 1930 (1973)
Q Consensus 1869 lAayLL~~~-~-~sLa~La~~yLg~~l~K~~q~sdW~~--RPL-s~eqi~YAa~DA~~LL~Lyd~L~ 1930 (1973)
+|+|||+.. + ++|+.|+.+|++...-...+...+.. ..+ ......|++..+.+++.|++.|.
T Consensus 84 LAaYLL~p~~~~~~l~~la~~yl~~~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~a~~l~~L~~~l~ 150 (151)
T cd06128 84 LEAYLLDPVAGRHDMDSLAERWLKEKTITFEEIAGKGLTFNQIALEEAGEYAAEDAAVTLQLHLKMW 150 (151)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHcCCCCccHHHHcCCCCChhhcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999953 2 59999999999876211011222210 011 11122478888888888888774
No 83
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.60 E-value=1.1e-06 Score=115.82 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=118.0
Q ss_pred EEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceecccccccccc---------------cc-
Q psy15183 871 IVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAV---------------RF- 926 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~---------------~~- 926 (1973)
|=||+||.++.+++..+..|..+ +||+|+-... ...+||..|...... .+
T Consensus 2 iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~ 75 (599)
T TIGR01991 2 VGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD------GGVEVGKEALAAAAEDPKNTISSVKRLMGRSIE 75 (599)
T ss_pred EEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC------CCEEecHHHHHhhhhChhhhHHHHHHHhCCCcc
Confidence 56999999999999876666532 4566655422 134677766321100 00
Q ss_pred ----EEeecc--------------cCCcccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHH
Q psy15183 927 ----QLKTQF--------------DKNVVTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984 (1973)
Q Consensus 927 ----~l~~Pi--------------~~G~V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~E 984 (1973)
.-.+|+ ..|.+.-.+....++.++. .+++... ..++||.|..+....|+.+.+
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v-----~~~VItVPa~f~~~qR~a~~~ 150 (599)
T TIGR01991 76 DIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDL-----VGAVITVPAYFDDAQRQATKD 150 (599)
T ss_pred chhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCCHHHHHHHHH
Confidence 000122 1233333444455555554 3566543 479999999999999988776
Q ss_pred HHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEee--cCEE-ccCCcEEeeccHHHHHHHHHHHH
Q psy15183 985 LLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDLGGFSVIHHLHKLL 1058 (1973)
Q Consensus 985 lLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~rl~vGG~~lt~~L~~lL 1058 (1973)
. .+..|+.-+.+..++.+|++++|.. ..+-+|+|+|++++.|+-+- +|.. +..+.--..+||.+++..|.+.+
T Consensus 151 A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l 229 (599)
T TIGR01991 151 A-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI 229 (599)
T ss_pred H-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 6 5889999999999999998877641 45789999999999988763 4432 11112234799999999999888
Q ss_pred hhh
Q psy15183 1059 QLK 1061 (1973)
Q Consensus 1059 ~~k 1061 (1973)
..+
T Consensus 230 ~~~ 232 (599)
T TIGR01991 230 LKQ 232 (599)
T ss_pred HHh
Confidence 654
No 84
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.59 E-value=1.2e-06 Score=116.60 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=75.1
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC-----CceEEEEeeCCCceEEEEee--cCEEc
Q psy15183 964 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE-----GQSGVIISCGYQCTHVIPVI--NGCID 1036 (1973)
Q Consensus 964 ~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g-----~~tgLVVDiG~s~T~V~PV~--dG~vl 1036 (1973)
..++||.|.++....|+.+.+ ..+..|+.-+.+..++.+|++++|.. ..+-+|+|+|++++.|+-|- +|..-
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 479999999999999888776 45788999999999999988887641 35789999999999987663 45422
Q ss_pred c-CCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 1037 A-SKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1037 ~-~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
- .+.-...+||.+++..|.+.+..+
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~~ 245 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQD 245 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHHH
Confidence 1 122235799999999998877543
No 85
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.59 E-value=1.4e-06 Score=115.79 Aligned_cols=180 Identities=15% Similarity=0.096 Sum_probs=115.1
Q ss_pred eEEEEcCcceEEEEEeCCCCccE--------EEecceeeccCCCCCccccceeccccccccccc-----cE---------
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNL--------IFKNLIAKPRKERGKKDGETQVGNDISNIEAVR-----FQ--------- 927 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~--------i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~-----~~--------- 927 (1973)
+|=||+||.++++++.....|.. .+||+|+-... ...++|+.|....... +.
T Consensus 4 viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~------~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~ 77 (627)
T PRK00290 4 IIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKD------GERLVGQPAKRQAVTNPENTIFSIKRLMGRRD 77 (627)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCC------CCEEEcHHHHHhhhhCchhhHHHHHHHhCCCc
Confidence 67799999999999986666642 23555554311 1346777664321100 00
Q ss_pred -------Eeeccc-------------CCcccC-HHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHH
Q psy15183 928 -------LKTQFD-------------KNVVTH-YDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSLM 982 (1973)
Q Consensus 928 -------l~~Pi~-------------~G~V~d-wd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l 982 (1973)
-.+|+. +|.... .+....++.++. .+++... ..++||.|..+....|+.+
T Consensus 78 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v-----~~~VItVPa~f~~~qR~a~ 152 (627)
T PRK00290 78 EEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKV-----TEAVITVPAYFNDAQRQAT 152 (627)
T ss_pred hHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCC-----ceEEEEECCCCCHHHHHHH
Confidence 011111 122122 233344555443 3455433 3699999999999999887
Q ss_pred HHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEeec--CEE-ccCCcEEeeccHHHHHHHHHH
Q psy15183 983 SELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVIN--GCI-DASKAKRIDLGGFSVIHHLHK 1056 (1973)
Q Consensus 983 ~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~d--G~v-l~~si~rl~vGG~~lt~~L~~ 1056 (1973)
.+.. +..|++-+.+..++.+|++++|.. ..+-+|+|+|++++.|+-+.- |.. +..+.-..++||.+++..|.+
T Consensus 153 ~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 231 (627)
T PRK00290 153 KDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIID 231 (627)
T ss_pred HHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHH
Confidence 6544 778999999999999998887651 467999999999998877643 222 112223457999999999988
Q ss_pred HHhhh
Q psy15183 1057 LLQLK 1061 (1973)
Q Consensus 1057 lL~~k 1061 (1973)
.+..+
T Consensus 232 ~~~~~ 236 (627)
T PRK00290 232 YLADE 236 (627)
T ss_pred HHHHH
Confidence 77544
No 86
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.57 E-value=1.5e-06 Score=114.31 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---C
Q psy15183 940 YDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---G 1012 (1973)
Q Consensus 940 wd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~ 1012 (1973)
.+....++.++- .++|... ..+++|.|..++...|+.+-+. .+.-|+.-+.+..++.+|++++|.. .
T Consensus 119 eei~a~iL~~lk~~ae~~lg~~v-----~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~ 192 (595)
T PRK01433 119 PEIAAEIFIYLKNQAEEQLKTNI-----TKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQK 192 (595)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCC
Confidence 344445555544 3455433 4799999999999998887765 5788999999999999999988762 3
Q ss_pred ceEEEEeeCCCceEEEEee--cCEEc-cCCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 1013 QSGVIISCGYQCTHVIPVI--NGCID-ASKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1013 ~tgLVVDiG~s~T~V~PV~--dG~vl-~~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
.+-+|+|+|++++.|+-+- +|..- ..+.--..+||.+++..|.+.+..+
T Consensus 193 ~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 193 GCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred CEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 4679999999999887763 55321 1112234699999999998887655
No 87
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.56 E-value=1.1e-06 Score=116.59 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=76.3
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEee--cCEEc-c
Q psy15183 964 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVI--NGCID-A 1037 (1973)
Q Consensus 964 ~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~--dG~vl-~ 1037 (1973)
..+|||.|..+....|+.+.+. .+.-|+.-+.+..++.+|++++|.. ...-+|+|+|++++.|+-+. +|..- .
T Consensus 161 ~~aVITVPayF~~~qR~at~~A-a~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDA-GTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHH-HHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 4799999999999998887654 4778999999999999999888752 46789999999999987764 66432 2
Q ss_pred CCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 1038 SKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1038 ~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
.+.--.++||.+++..|.+.+..+
T Consensus 240 at~Gd~~LGG~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 240 ATNGDTHLGGEDFDLALSDYILEE 263 (657)
T ss_pred EecCCCCCCchhHHHHHHHHHHHH
Confidence 222345799999999998877544
No 88
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.55 E-value=2.4e-06 Score=113.72 Aligned_cols=181 Identities=15% Similarity=0.092 Sum_probs=115.2
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceeccccccccccc-----cE--------
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAVR-----FQ-------- 927 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~-----~~-------- 927 (1973)
.+|=||+|+.++.+++.....|..+ .||+|+-... ...+||+.|....... +.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~------~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 76 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKS------GDRLVGQLAKRQAVTNAENTVYSIKRFIGRR 76 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCC------CCEEEcHHHHHhhhhCcccchHHHHHHhCCC
Confidence 3678999999999999876667533 3556655321 1346776653211000 00
Q ss_pred --------Eeecc-----cCC--------cccC-HHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHHH
Q psy15183 928 --------LKTQF-----DKN--------VVTH-YDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSL 981 (1973)
Q Consensus 928 --------l~~Pi-----~~G--------~V~d-wd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re~ 981 (1973)
-++|+ .+| .... .+....++.++. ..||... ..++||.|..+....|+.
T Consensus 77 ~~d~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v-----~~~VITVPa~f~~~qR~a 151 (653)
T PRK13411 77 WDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPV-----TQAVITVPAYFTDAQRQA 151 (653)
T ss_pred ccchhHHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCCcHHHHH
Confidence 01111 112 1112 233333444443 3455433 469999999999999998
Q ss_pred HHHHHHHhcCCCeEeechhhHHhhhhcCCC----CceEEEEeeCCCceEEEEee--cCEE-ccCCcEEeeccHHHHHHHH
Q psy15183 982 MSELLFECYQVPSVCYGIDSLFSYQYNGWE----GQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDLGGFSVIHHL 1054 (1973)
Q Consensus 982 l~ElLFE~~~vpav~~~~~sllS~ya~G~g----~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~rl~vGG~~lt~~L 1054 (1973)
+.+. .+.-|+.-+.+..++.+|++++|.. ...-+|+|+|++++.|+-+- +|.. +..+.--..+||.+++..|
T Consensus 152 ~~~A-a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 152 TKDA-GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHHH-HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 8764 5778999999999999999888651 35689999999999887653 3322 1122223469999999999
Q ss_pred HHHHhhh
Q psy15183 1055 HKLLQLK 1061 (1973)
Q Consensus 1055 ~~lL~~k 1061 (1973)
.+.+..+
T Consensus 231 ~~~l~~~ 237 (653)
T PRK13411 231 VDWLVEN 237 (653)
T ss_pred HHHHHHH
Confidence 8877544
No 89
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.54 E-value=7.2e-06 Score=108.62 Aligned_cols=180 Identities=12% Similarity=0.084 Sum_probs=117.0
Q ss_pred ceEEEEcCcceEEEEEeCCCCccE--------EEecceeeccCCCCCccccceecccccccccc---------------c
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNL--------IFKNLIAKPRKERGKKDGETQVGNDISNIEAV---------------R 925 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~--------i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~---------------~ 925 (1973)
.+|=||+||.++.+++..+..|.. .+||+|+-... ..++|..|...... .
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-------~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 92 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-------GIEVGYEARANAAQDPKNTISSVKRFMGRS 92 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-------CEEEcHHHHHhhHhCchhhHHHHHHHhCCC
Confidence 368899999999999986666642 24555554321 14667665321100 0
Q ss_pred c------EEeecc--------------cCCcccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHHH
Q psy15183 926 F------QLKTQF--------------DKNVVTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSL 981 (1973)
Q Consensus 926 ~------~l~~Pi--------------~~G~V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re~ 981 (1973)
+ .-.+|+ ..|.+.-.+....++.++. .+++... ..++||.|..+....|+.
T Consensus 93 ~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v-----~~~VITVPa~f~~~qR~a 167 (616)
T PRK05183 93 LADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGEL-----DGAVITVPAYFDDAQRQA 167 (616)
T ss_pred chhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCCHHHHHH
Confidence 0 001121 1222333344455555554 3455433 479999999999999988
Q ss_pred HHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEee--cCEE-ccCCcEEeeccHHHHHHHHH
Q psy15183 982 MSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDLGGFSVIHHLH 1055 (1973)
Q Consensus 982 l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~rl~vGG~~lt~~L~ 1055 (1973)
+.+. .+..|++-+.+..++.+|++++|.. ...-+|+|+|++++.|+.+- .|.. +..+.--..+||.+++..|.
T Consensus 168 ~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~ 246 (616)
T PRK05183 168 TKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLA 246 (616)
T ss_pred HHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHH
Confidence 7655 5889999999999999998877641 35679999999999987764 3432 11222335799999999999
Q ss_pred HHHhhh
Q psy15183 1056 KLLQLK 1061 (1973)
Q Consensus 1056 ~lL~~k 1061 (1973)
+.+..+
T Consensus 247 ~~~~~~ 252 (616)
T PRK05183 247 DWILEQ 252 (616)
T ss_pred HHHHHH
Confidence 887655
No 90
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.54 E-value=5.1e-06 Score=103.81 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHH
Q psy15183 975 PNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVI 1051 (1973)
Q Consensus 975 p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt 1051 (1973)
++...+.+.+ +++..|+.-+.+..+++++++++... ....+|||+|+++|+++.+.+|.++. .+.+++||+++|
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 4555555555 45788999889999999988876431 24579999999999999999998774 577899999999
Q ss_pred HHHHHHHhhhCCCCCCCCCHHHHHHHHHHheecc
Q psy15183 1052 HHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 1085 (1973)
Q Consensus 1052 ~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va 1085 (1973)
+.+.+.| ..+...+|.+|..++...
T Consensus 233 ~~i~~~l---------~~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 233 KDIAKAL---------RTPLEEAERIKIKYGCAS 257 (371)
T ss_pred HHHHHHh---------CCCHHHHHHHHHHeeEec
Confidence 9988765 245677999999888753
No 91
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.53 E-value=1e-06 Score=117.24 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=116.2
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceecccccccccc--c---cE--------
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAV--R---FQ-------- 927 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~--~---~~-------- 927 (1973)
.+|=||+|+.++.+++.....|..+ +||+|+-... ...+||+.|...... . +.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~------~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~ 76 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKD------GELLVGQLARRQLVLNPQNTFYNLKRFIGRR 76 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCC------CCEEECHHHHHhhHhCccceehHHhhhhCCC
Confidence 3678999999999999876666532 4555555321 134677665321100 0 00
Q ss_pred --------Eeecc-----cCCc-----------ccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHH
Q psy15183 928 --------LKTQF-----DKNV-----------VTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSR 979 (1973)
Q Consensus 928 --------l~~Pi-----~~G~-----------V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~R 979 (1973)
...|+ .+|. +.-.+....++.++. ..+|... ..++||.|..++...|
T Consensus 77 ~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v-----~~~VITVPa~f~~~qR 151 (668)
T PRK13410 77 YDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPV-----TGAVITVPAYFNDSQR 151 (668)
T ss_pred chhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCCHHHH
Confidence 01122 1121 111233334444443 3455433 3699999999999999
Q ss_pred HHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEee--cCEE-ccCCcEEeeccHHHHHHH
Q psy15183 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDLGGFSVIHH 1053 (1973)
Q Consensus 980 e~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~rl~vGG~~lt~~ 1053 (1973)
+.+.+.. +.-|+.-+.+..++.+|++++|.. ..+-+|+|+|++++.|+-+. +|.. +..+.--.++||.+++..
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~ 230 (668)
T PRK13410 152 QATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230 (668)
T ss_pred HHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence 8876654 788999999999999999888752 46789999999999887764 4432 112222357999999999
Q ss_pred HHHHHhhh
Q psy15183 1054 LHKLLQLK 1061 (1973)
Q Consensus 1054 L~~lL~~k 1061 (1973)
|.+.|..+
T Consensus 231 l~~~l~~~ 238 (668)
T PRK13410 231 IVDWLAEQ 238 (668)
T ss_pred HHHHHHHH
Confidence 98877544
No 92
>PF02751 TFIIA_gamma_C: Transcription initiation factor IIA, gamma subunit; InterPro: IPR015871 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the beta-barrel domain found at the C-terminal of the gamma subunit of transcription factor TFIIA. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=98.48 E-value=2.4e-08 Score=87.91 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=20.3
Q ss_pred ccccccceecCccccccccccccccc
Q psy15183 51 KVKSRLTFKSGKLNTFLFIVTKMSDT 76 (1973)
Q Consensus 51 ~v~~k~~~k~g~l~~y~~~~~~~~~~ 76 (1973)
+||+|++|| |||+||||||+||+|.
T Consensus 1 ~vk~k~~fK-G~L~tYrfcDnVWTFi 25 (52)
T PF02751_consen 1 KVKNKLSFK-GHLDTYRFCDNVWTFI 25 (52)
T ss_dssp T---EEEEE-EEEEEEEEETTEEEEE
T ss_pred CcceeEEEE-EeeeEEEeeCcEEEEE
Confidence 589999999 9999999999999864
No 93
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases. The 3'-5' exonuclease domain of family-A DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-A DNA polymerases contain a DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-B DNA polymerases. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four invariant acidic residues that serve as ligands for the two metal ions required for catalysis. The Klenow fragment (KF) of Escherichia coli Pol I, the Thermus aquaticus (Taq) Pol I, and Bacillus stearothermophilus (BF) Pol I are examples of family-A DNA polymerases. They are involved in nucleotide excision repair and in the processing of Okazaki fragments that are generated during lagging strand synthesis. The N-terminal domains of BF Pol I and Taq Po
Probab=98.48 E-value=1.7e-06 Score=94.18 Aligned_cols=128 Identities=18% Similarity=0.155 Sum_probs=88.7
Q ss_pred CCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeecchhHhHHHHHHHhCCcccc-eeehhhhhhhcCCCC-
Q psy15183 356 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG-MFDTHQACKFLPMPR- 433 (1973)
Q Consensus 356 ~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~n-lFDT~lAA~lLg~~~- 433 (1973)
.+.+..+.+++.++.|+|++-. ......|.++|++..+.|++||+|.++.+| +.+|+.+.+ +||||+|+|||+..+
T Consensus 17 ~~~~~glal~~~~~~~yi~~~~-~~~~~~l~~~l~~~~~~ki~~d~K~~~~~l-~~~gi~l~~~~fD~~LAaYLL~p~~~ 94 (151)
T cd06128 17 SANLVGLAFAIEGVAAYIPVAH-DYALELLKPLLEDEKALKVGQNLKYDRVIL-ANYGIELRGIAFDTMLEAYLLDPVAG 94 (151)
T ss_pred cCcEEEEEEEcCCCeEEEeCCC-CcCHHHHHHHHcCCCCCEEeeehHHHHHHH-HHCCCCCCCcchhHHHHHHHcCCCCC
Confidence 4667778888776677665211 003456889999999999999999999999 788998764 599999999999532
Q ss_pred -ccHHHHHHHHcCCCCCcccccccCCC--CCC-CchhHhHHHHhHHHHHHHHHHHH
Q psy15183 434 -QSLAYLLKHYCDVDSDKTFQLFDWRH--RPL-PEPAIQYARTDTHYLLYVYDCMK 485 (1973)
Q Consensus 434 -~sLa~Lv~~ylgv~ldK~~q~sDW~~--RPL-s~eql~YAa~Da~~Ll~L~d~L~ 485 (1973)
.++++|+.+|++...-...+...+.. .++ ......|++..+.+++.|++.|.
T Consensus 95 ~~~l~~la~~yl~~~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~a~~l~~L~~~l~ 150 (151)
T cd06128 95 RHDMDSLAERWLKEKTITFEEIAGKGLTFNQIALEEAGEYAAEDAAVTLQLHLKMW 150 (151)
T ss_pred CCCHHHHHHHHcCCCCccHHHHcCCCCChhhcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 59999999999876211011211210 011 11122378888888888888774
No 94
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.43 E-value=2.7e-05 Score=98.89 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHH
Q psy15183 975 PNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVI 1051 (1973)
Q Consensus 975 p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt 1051 (1973)
++...+.+.. +++.-|+.-..+..++++++++.... ....+|||+|+++|.++-+.+|.++ ....+++||+++|
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence 3444555555 56888999999999999999987541 3458999999999999999999887 5678899999999
Q ss_pred HHHHHHHhhhCCCCCCCCCHHHHHHHHHHheec
Q psy15183 1052 HHLHKLLQLKYPSHINSITPSRSEELLWDYGFV 1084 (1973)
Q Consensus 1052 ~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~v 1084 (1973)
+.+...|. ++...+|.+|.+++..
T Consensus 241 ~dIa~~l~---------i~~~~AE~lK~~~g~~ 264 (420)
T PRK09472 241 SDIAYAFG---------TPPSDAEAIKVRHGCA 264 (420)
T ss_pred HHHHHHhC---------cCHHHHHHHHHhccee
Confidence 99987662 4567789998887654
No 95
>PRK11678 putative chaperone; Provisional
Probab=98.40 E-value=1.5e-05 Score=101.52 Aligned_cols=178 Identities=14% Similarity=0.113 Sum_probs=109.1
Q ss_pred EEEEcCcceEEEEEeCCCCccE--------EEecceeeccCCC----------------------------------CCc
Q psy15183 871 IVFDNGAWCCRVGWASCEKPNL--------IFKNLIAKPRKER----------------------------------GKK 908 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age~~P~~--------i~Pn~vgr~~~~~----------------------------------~~~ 908 (1973)
|=||+||.++-+|+..+..|.. .+||+++-..... ...
T Consensus 3 iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T PRK11678 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDVT 82 (450)
T ss_pred EEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccccc
Confidence 5699999999999996655542 3556665431100 001
Q ss_pred cccceecccccccc--c-ccc-EE--------eecccCCcccCHH-HHHHHHHHHHh----hcCcCCCCCCCCcEEEEeC
Q psy15183 909 DGETQVGNDISNIE--A-VRF-QL--------KTQFDKNVVTHYD-IQEQIFDYAFS----HLSINTEGNVNHPIVLTEP 971 (1973)
Q Consensus 909 ~~~~~vGdea~~~~--~-~~~-~l--------~~Pi~~G~V~dwd-~le~i~~~if~----~L~i~~~~~~~~pVlltEp 971 (1973)
+..+++|..+.... . ... .+ ..++..+.+...+ ....+|.++-. .++... ..+||+.|
T Consensus 83 ~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~~v-----~~~VItvP 157 (450)
T PRK11678 83 AQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAAI-----TQAVIGRP 157 (450)
T ss_pred ccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCCCC-----CcEEEEEC
Confidence 22457888774321 1 011 11 1234434333322 23444444432 344332 46999999
Q ss_pred CCCc-----HHHHHHH--HHHHHHhcCCCeEeechhhHHhhhhcCC---CCceEEEEeeCCCceEEEEee-cC-------
Q psy15183 972 FLNP-----NYSRSLM--SELLFECYQVPSVCYGIDSLFSYQYNGW---EGQSGVIISCGYQCTHVIPVI-NG------- 1033 (1973)
Q Consensus 972 ~~~p-----~~~Re~l--~ElLFE~~~vpav~~~~~sllS~ya~G~---g~~tgLVVDiG~s~T~V~PV~-dG------- 1033 (1973)
..+. ...|... ..-..+.-|++.+.+..++.+|++++|. .+..-+|+|+|.+++.|+-|- ++
T Consensus 158 a~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~ 237 (450)
T PRK11678 158 VNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRAD 237 (450)
T ss_pred CccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCC
Confidence 8875 5555432 3445678899999999999999998874 146799999999999887763 21
Q ss_pred ---EEccCCcEEeeccHHHHHHHHH
Q psy15183 1034 ---CIDASKAKRIDLGGFSVIHHLH 1055 (1973)
Q Consensus 1034 ---~vl~~si~rl~vGG~~lt~~L~ 1055 (1973)
.++..+- ..+||.+++..|.
T Consensus 238 r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 238 RSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred cceeEEecCC--CCCChHHHHHHHH
Confidence 1222221 3699999999986
No 96
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.33 E-value=2e-05 Score=104.56 Aligned_cols=115 Identities=20% Similarity=0.208 Sum_probs=80.9
Q ss_pred HHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC----C
Q psy15183 941 DIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE----G 1012 (1973)
Q Consensus 941 d~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g----~ 1012 (1973)
+....++.++. ..++... ..+++|.|..++...|+.+.+.+ +.-|++.+.+..++.+|+++++.. +
T Consensus 114 ~~~~~~l~~l~~~a~~~~~~~~-----~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~ 187 (602)
T PF00012_consen 114 ELSAMILKYLKEMAEKYLGEKV-----TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKG 187 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHTSBE-----EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSE
T ss_pred cccccchhhhcccchhhccccc-----ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccc
Confidence 44455555554 2455443 36999999999999998887655 678999999999999988766541 4
Q ss_pred ceEEEEeeCCCceEEEEee--cCEEcc-CCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 1013 QSGVIISCGYQCTHVIPVI--NGCIDA-SKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1013 ~tgLVVDiG~s~T~V~PV~--dG~vl~-~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
.+-+|+|+|++++.|+-|. +|..-- .......+||.+++..|.+.+..+
T Consensus 188 ~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 188 KTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp EEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred cceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 6899999999999887763 554322 223346799999999999888644
No 97
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.04 E-value=0.0004 Score=87.11 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHH
Q psy15183 976 NYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIH 1052 (1973)
Q Consensus 976 ~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~ 1052 (1973)
...-+.+.. ++|.-|..=..+.-++++|..++-.. .-.+|+||||+++|+|+-+.+|.+.+ +..+|+||+++|.
T Consensus 164 ~~~~~Nl~k-~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~--~~~ipvgG~~vT~ 240 (418)
T COG0849 164 KNILENLEK-CVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY--TGVIPVGGDHVTK 240 (418)
T ss_pred hHHHHHHHH-HHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEE--EeeEeeCccHHHH
Confidence 333444433 44777888777888888888877431 45789999999999999999999995 4578999999999
Q ss_pred HHHHHHhhhCCCCCCCCCHHHHHHHHHHheecc
Q psy15183 1053 HLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 1085 (1973)
Q Consensus 1053 ~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va 1085 (1973)
-+...|. .+.+.+|+||.+|+...
T Consensus 241 DIa~~l~---------t~~~~AE~iK~~~g~a~ 264 (418)
T COG0849 241 DIAKGLK---------TPFEEAERIKIKYGSAL 264 (418)
T ss_pred HHHHHhC---------CCHHHHHHHHHHcCccc
Confidence 9999884 44677999999987654
No 98
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=97.93 E-value=0.0011 Score=82.25 Aligned_cols=96 Identities=7% Similarity=0.051 Sum_probs=65.0
Q ss_pred CcHHHHHHHHHHHHHhcCCCeEeechhhHH--hhhh-----c---CCCCceEEEEeeCCCceEEEEeecCEEccCCcEEe
Q psy15183 974 NPNYSRSLMSELLFECYQVPSVCYGIDSLF--SYQY-----N---GWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRI 1043 (1973)
Q Consensus 974 ~p~~~Re~l~ElLFE~~~vpav~~~~~sll--S~ya-----~---G~g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl 1043 (1973)
.++...+.+.++ |+..|+.-..+-.++++ -++. . .....+.++||+|+.+|+++-+.+|.++ .++.+
T Consensus 140 ~~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i 216 (348)
T TIGR01175 140 TRKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREV 216 (348)
T ss_pred ecHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEe
Confidence 366777777766 56677665555444444 3442 1 1101248999999999999999999988 47789
Q ss_pred eccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q psy15183 1044 DLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDY 1081 (1973)
Q Consensus 1044 ~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~ 1081 (1973)
++||.++++-+.+.+ .++...++++|...
T Consensus 217 ~~G~~~i~~~i~~~~---------~~~~~~Ae~~k~~~ 245 (348)
T TIGR01175 217 PFGTRQLTSELSRAY---------GLNPEEAGEAKQQG 245 (348)
T ss_pred echHHHHHHHHHHHc---------CCCHHHHHHHHhcC
Confidence 999999998887654 23445555555443
No 99
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.72 E-value=5.2e-05 Score=100.50 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHH
Q psy15183 538 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILK 607 (1973)
Q Consensus 538 ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~ 607 (1973)
+.++|++|.+||+++|++.|.|+++|++|..|.+||+.+|++..+|.++.+.....+++|+.+++++|++
T Consensus 521 ~~~l~~~L~~wR~~~A~~~~~p~~~If~d~~L~~ia~~~P~~~~~l~~i~gv~~~k~~~~G~~~l~~i~~ 590 (591)
T TIGR01389 521 DNALFEALRELRKEQADEQNVPPYVIFSDSTLREMAEKRPATLNALLKIKGVGQNKLDRYGEAFLEVIRE 590 (591)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEECHHHHHHHHHHCCCCHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4499999999999999999999999999999999999999999999999888899999999999999974
No 100
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.65 E-value=0.0023 Score=79.39 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=55.0
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeech--hhHHhhhhcC---CC----CceEEEEeeCCCceEEEEeecCE
Q psy15183 964 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGI--DSLFSYQYNG---WE----GQSGVIISCGYQCTHVIPVINGC 1034 (1973)
Q Consensus 964 ~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~--~sllS~ya~G---~g----~~tgLVVDiG~s~T~V~PV~dG~ 1034 (1973)
..|+++- .++...+...++ |+..|..-..+-. -+++-+|... .+ ..+-++||+|++.|+++-+.+|.
T Consensus 126 ~~Vll~A---a~k~~v~~~~~~-~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~ 201 (340)
T PF11104_consen 126 MEVLLVA---APKEIVESYVEL-FEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGK 201 (340)
T ss_dssp EEEEEEE---EEHHHHHHHHHH-HHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTE
T ss_pred eEEEEEE---EcHHHHHHHHHH-HHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCE
Confidence 4444443 245555555543 4677776544433 3444444331 10 13568999999999999999999
Q ss_pred EccCCcEEeeccHHHHHHHHHHHH
Q psy15183 1035 IDASKAKRIDLGGFSVIHHLHKLL 1058 (1973)
Q Consensus 1035 vl~~si~rl~vGG~~lt~~L~~lL 1058 (1973)
++ -.+.+++||.++++-+.+.+
T Consensus 202 ~~--f~R~i~~G~~~l~~~i~~~~ 223 (340)
T PF11104_consen 202 PI--FSRSIPIGGNDLTEAIAREL 223 (340)
T ss_dssp EE--EEEEES-SHHHHHHHHHHHT
T ss_pred EE--EEEEEeeCHHHHHHHHHHhc
Confidence 88 46788999999999888664
No 101
>KOG4373|consensus
Probab=97.57 E-value=0.00021 Score=84.90 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=100.6
Q ss_pred CCceeEEEEEeC-CceEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHHHHH-hcCCcccccchHHHH-HHHCC--
Q psy15183 1801 QGYTCLMQISTR-DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK-DFGLYVVGMFDTHQA-CKFLP-- 1875 (1973)
Q Consensus 1801 ~g~v~LlQISt~-~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr-~~GI~l~nlfDT~lA-ayLL~-- 1875 (1973)
.+....+||+.. ..|+|+..+......+.|+.+|+|++..+||-+.+.|...|.| .|++.+..+.|+... .-.++
T Consensus 146 ~P~~~~lqlcV~en~C~I~ql~~~~~IP~~LR~fl~D~~~~~vgv~~d~D~~KL~r~~hql~I~~~~dlr~~~~d~~g~~ 225 (319)
T KOG4373|consen 146 DPPPDTLQLCVGENRCLIIQLIHCKRIPHELRSFLEDPDHTFVGVWNDQDAGKLERKEHQLEIGELEDLRLLVNDSLGGS 225 (319)
T ss_pred CCCcchhhhhhcccceeeEEeeccccchHHHHHhhcCCCceEEeccccccHHHHhhhhhcccHHhhhhHHhhcchhhccC
Confidence 344678999988 6678887776666788899999999999999999999999987 789888877777653 33344
Q ss_pred CCCCcHHHHHHHHc---C--CCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15183 1876 MPRQSLAYLLKHYC---D--VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 1926 (1973)
Q Consensus 1876 ~~~~sLa~La~~yL---g--~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Ly 1926 (1973)
.+..+...|+...+ | +.+++..+++||...+|+.+|+.||+.|++..+.|+
T Consensus 226 ~~~~s~e~i~~~~~~~~~~~v~l~~~i~msdw~~~~Ls~~Ql~~asidvy~c~~lg 281 (319)
T KOG4373|consen 226 MPNDSFEEIVSETLGYYGKDVRLDKEIRMSDWSVYPLSDDQLLQASIDVYVCHKLG 281 (319)
T ss_pred ccCccHHHHHHHHhhccccccccChhcccccceeeeccHHHHHHHHhHHHHHHHHH
Confidence 23345555555554 4 456788899999999999999999999999999998
No 102
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily. The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy
Probab=97.48 E-value=0.00048 Score=69.85 Aligned_cols=73 Identities=22% Similarity=0.270 Sum_probs=57.2
Q ss_pred EEEEeeeccCCccCCcEEEEEEEeC--CceEEEEccCccccHHHHHHHHcCCC-ceeeecchhHhHHHHHHHhCC-----
Q psy15183 343 IAIDLEYHNYRSYQGYTCLMQISTR--DKDYIVDTLKLREDLEVLNEVLTDKN-IVKVFHGADSDIKWLQKDFGL----- 414 (1973)
Q Consensus 343 IavDtE~~~~~s~~g~l~LIQIst~--~~~~lID~l~l~~~l~~L~~lL~dp~-I~KV~H~ak~Dl~~L~r~~Gi----- 414 (1973)
+++|+|+.+.+++...++++|++.. +..+++| +.+++.+.. .+.|+||+.+|+..|.+.+..
T Consensus 1 ~~~DiEt~~~~~~~~~i~~i~~~~~~~~~~~~~~----------f~~~l~~~~~~v~V~hn~~fD~~fL~~~~~~~~~~~ 70 (96)
T cd06125 1 IAIDTEATGLDGAVHEIIEIALADVNPEDTAVID----------LKDILRDKPLAILVGHNGSFDLPFLNNRCAELGLKY 70 (96)
T ss_pred CEEEEECCCCCCCCCcEEEEEEEEccCCCEEEeh----------HHHHHhhCCCCEEEEeCcHHhHHHHHHHHHHcCCCC
Confidence 4799999999999999999999876 5567766 667787766 678999999999888765533
Q ss_pred --cccceeehhhh
Q psy15183 415 --YVVGMFDTHQA 425 (1973)
Q Consensus 415 --~~~nlFDT~lA 425 (1973)
.....+||+.+
T Consensus 71 p~~~~~~lDT~~l 83 (96)
T cd06125 71 PLLAGSWIDTIKL 83 (96)
T ss_pred CCcCCcEEEehHH
Confidence 23457788755
No 103
>KOG4373|consensus
Probab=97.47 E-value=0.00023 Score=84.56 Aligned_cols=127 Identities=19% Similarity=0.192 Sum_probs=100.2
Q ss_pred cCCcEEEEEEEeC-CceEEEEccCccccHHHHHHHHcCCCceeeecchhHhHHHHHH-HhCCcccceeehhh-hhhhcCC
Q psy15183 355 YQGYTCLMQISTR-DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQK-DFGLYVVGMFDTHQ-ACKFLPM 431 (1973)
Q Consensus 355 ~~g~l~LIQIst~-~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r-~~Gi~~~nlFDT~l-AA~lLg~ 431 (1973)
+.+....+||+.+ ..|+||..+........|+.+|+|++..+|+-+.++|...|.| .+++.+..+.|... +.-.+|.
T Consensus 145 ~~P~~~~lqlcV~en~C~I~ql~~~~~IP~~LR~fl~D~~~~~vgv~~d~D~~KL~r~~hql~I~~~~dlr~~~~d~~g~ 224 (319)
T KOG4373|consen 145 SDPPPDTLQLCVGENRCLIIQLIHCKRIPHELRSFLEDPDHTFVGVWNDQDAGKLERKEHQLEIGELEDLRLLVNDSLGG 224 (319)
T ss_pred cCCCcchhhhhhcccceeeEEeeccccchHHHHHhhcCCCceEEeccccccHHHHhhhhhcccHHhhhhHHhhcchhhcc
Confidence 3455778999998 5688887766655678899999999999999999999999888 89999888777653 2233442
Q ss_pred --CCccHHHHHHH---HcC--CCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 432 --PRQSLAYLLKH---YCD--VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 432 --~~~sLa~Lv~~---ylg--v~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
+.-+...|+.. +.| +.+++..+.+||...||+.+|+.||+.||+....|+
T Consensus 225 ~~~~~s~e~i~~~~~~~~~~~v~l~~~i~msdw~~~~Ls~~Ql~~asidvy~c~~lg 281 (319)
T KOG4373|consen 225 SMPNDSFEEIVSETLGYYGKDVRLDKEIRMSDWSVYPLSDDQLLQASIDVYVCHKLG 281 (319)
T ss_pred CccCccHHHHHHHHhhccccccccChhcccccceeeeccHHHHHHHHhHHHHHHHHH
Confidence 22344445544 445 567888899999999999999999999999999999
No 104
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=97.07 E-value=0.0028 Score=77.95 Aligned_cols=183 Identities=12% Similarity=0.006 Sum_probs=117.0
Q ss_pred EEcCcceEEEEEeC-CCCc-cEEEecceeeccCCCC---------------CccccceeccccccccccccEEeecccCC
Q psy15183 873 FDNGAWCCRVGWAS-CEKP-NLIFKNLIAKPRKERG---------------KKDGETQVGNDISNIEAVRFQLKTQFDKN 935 (1973)
Q Consensus 873 ID~GS~~iKaG~Ag-e~~P-~~i~Pn~vgr~~~~~~---------------~~~~~~~vGdea~~~~~~~~~l~~Pi~~G 935 (1973)
||+|-.++|+-+.+ +..+ +.+|||.++....... -.+..++||+.+...... ...+-+...
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~--~~~~~~~~~ 79 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT--NRARQLHDE 79 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC--ccceecccc
Confidence 79999999987742 2232 3579998875422210 011245677765322210 001111222
Q ss_pred cccCHHHHHHHHHHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHh--------cCCCeEeechhhHHhhhh
Q psy15183 936 VVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFEC--------YQVPSVCYGIDSLFSYQY 1007 (1973)
Q Consensus 936 ~V~dwd~le~i~~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~--------~~vpav~~~~~sllS~ya 1007 (1973)
. ..-+....++.+++...+.+. ...|++-.|.-.-...++.+.+.+-.. ..+..|.+.++++.|+|.
T Consensus 80 ~-~~~~~~~~L~~~Al~~~~~~~----~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~ 154 (320)
T TIGR03739 80 Y-TETPEYMALLRGALALSKVRE----IDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVH 154 (320)
T ss_pred c-cCCHHHHHHHHHHHHHhcCCC----CCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHH
Confidence 2 122467778888885544321 123444455544466778888776543 467788899999887765
Q ss_pred cCC-------CCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhC
Q psy15183 1008 NGW-------EGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKY 1062 (1973)
Q Consensus 1008 ~G~-------g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~ 1062 (1973)
.-. .....+|||||+.+|.++.+-++.+....+..++.|-..+.+-+.+.|..++
T Consensus 155 ~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~ 216 (320)
T TIGR03739 155 FVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKDI 216 (320)
T ss_pred HHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhhc
Confidence 310 1256799999999999998888888888888889999999999999887663
No 105
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.01 Score=78.42 Aligned_cols=187 Identities=16% Similarity=0.098 Sum_probs=123.8
Q ss_pred CceEEEEcCcceEEEEEeCCC-CccEEEecceeeccCCC--CCc-cccceecccccccccc-----ccEEeecccCC---
Q psy15183 868 SLPIVFDNGAWCCRVGWASCE-KPNLIFKNLIAKPRKER--GKK-DGETQVGNDISNIEAV-----RFQLKTQFDKN--- 935 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~-~P~~i~Pn~vgr~~~~~--~~~-~~~~~vGdea~~~~~~-----~~~l~~Pi~~G--- 935 (1973)
..+|=||+|+.++-+.+.... .|. +++|-.+....+. ... +...++|..+...... .+.+++.+-+|
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 357889999999999999766 564 4455555433322 000 1136888876542211 13344333322
Q ss_pred ----------cccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhh
Q psy15183 936 ----------VVTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDS 1001 (1973)
Q Consensus 936 ----------~V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~s 1001 (1973)
..+--+....++.++- ..|+-.. ..++||.|.++....|..+.+ ...-.|++-+.+.+++
T Consensus 84 ~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v-----~~~VItVPayF~d~qR~at~~-A~~iaGl~vlrlinEP 157 (579)
T COG0443 84 LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKV-----TDAVITVPAYFNDAQRQATKD-AARIAGLNVLRLINEP 157 (579)
T ss_pred CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCc-----ceEEEEeCCCCCHHHHHHHHH-HHHHcCCCeEEEecch
Confidence 1111223333444432 3455443 479999999999999776655 4577899999999999
Q ss_pred HHhhhhcCCC---CceEEEEeeCCCceEEEEeec--CE-EccCCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 1002 LFSYQYNGWE---GQSGVIISCGYQCTHVIPVIN--GC-IDASKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1002 llS~ya~G~g---~~tgLVVDiG~s~T~V~PV~d--G~-vl~~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
.+|+|++|.. ...-+|+|+|++++.|+=|-= |. -+..+.....+||++++..|...+..+
T Consensus 158 tAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 158 TAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred HHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHH
Confidence 9999999872 568999999999999887753 42 334455667899999999988877655
No 106
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily. The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy
Probab=96.79 E-value=0.0051 Score=62.42 Aligned_cols=73 Identities=25% Similarity=0.319 Sum_probs=54.0
Q ss_pred eEEEeeeccCCccCCceeEEEEEeC--CceEEEEcCCchhhHHHHHHHHcCCC-ceEeecchHHHHHHHHHhc---CCc-
Q psy15183 1788 IAIDLEYHNYRSYQGYTCLMQISTR--DKDYIVDTLKLREDLEVLNEVLTDKN-IVKVFHGADSDIKWLQKDF---GLY- 1860 (1973)
Q Consensus 1788 IavDlE~~~~~s~~g~v~LlQISt~--~~~~iiD~l~l~~~l~~L~~lLedp~-I~KV~Hg~K~Di~~Lqr~~---GI~- 1860 (1973)
+++|+|+.+.+++...++++|++.. +..++++ +.+++.+.. .+.|+||+.+|+..|.+.+ |+.
T Consensus 1 ~~~DiEt~~~~~~~~~i~~i~~~~~~~~~~~~~~----------f~~~l~~~~~~v~V~hn~~fD~~fL~~~~~~~~~~~ 70 (96)
T cd06125 1 IAIDTEATGLDGAVHEIIEIALADVNPEDTAVID----------LKDILRDKPLAILVGHNGSFDLPFLNNRCAELGLKY 70 (96)
T ss_pred CEEEEECCCCCCCCCcEEEEEEEEccCCCEEEeh----------HHHHHhhCCCCEEEEeCcHHhHHHHHHHHHHcCCCC
Confidence 5799999999999999999999866 5556655 667787766 7789999999998876543 222
Q ss_pred ---ccccchHHHH
Q psy15183 1861 ---VVGMFDTHQA 1870 (1973)
Q Consensus 1861 ---l~nlfDT~lA 1870 (1973)
....+||+.+
T Consensus 71 p~~~~~~lDT~~l 83 (96)
T cd06125 71 PLLAGSWIDTIKL 83 (96)
T ss_pred CCcCCcEEEehHH
Confidence 1235676655
No 107
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=96.33 E-value=0.016 Score=73.21 Aligned_cols=169 Identities=13% Similarity=0.076 Sum_probs=99.8
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHHHH
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIF 947 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i~ 947 (1973)
--.|=||+||.|+..=|+ +..+.|..+...-+. --++.-+..... --+..|+.....-|-+.+..+.
T Consensus 6 i~SVGIDIGTsTTqlvfS-----rl~l~n~a~~~~vpr-----~~I~dkev~yrS---~i~fTPl~~~~~ID~~~i~~~V 72 (475)
T PRK10719 6 LLSVGIDIGTTTTQVIFS-----RLELENRASVFQVPR-----IEIIDKEIIYRS---PIYFTPLLKQGEIDEAAIKELI 72 (475)
T ss_pred EEEEEEeccCceEEEEEE-----EEEEecccccccCce-----EEEeeeEEEEec---CceecCCCCCccccHHHHHHHH
Confidence 345779999999999887 344443322111000 001222211111 1246788777788999999999
Q ss_pred HHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHH---HHhcCCCeEeechhhHHhhhhcCC------CCceEEEE
Q psy15183 948 DYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELL---FECYQVPSVCYGIDSLFSYQYNGW------EGQSGVII 1018 (1973)
Q Consensus 948 ~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElL---FE~~~vpav~~~~~sllS~ya~G~------g~~tgLVV 1018 (1973)
+.-|.+-|+.+++-.-.-.|+|-. .+...+-.+..+-+ -..|=|....+..+++++.+|+|. .....++|
T Consensus 73 ~~ey~~Agi~~~die~~ahIITg~-~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~I 151 (475)
T PRK10719 73 EEEYQKAGIAPESIDSGAVIITGE-TARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNI 151 (475)
T ss_pred HHHHHHcCCCHHHccccEEEEEec-hhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEE
Confidence 999998888887543333444433 33333333333211 011111222223334444444433 14678999
Q ss_pred eeCCCceEEEEeecCEEccCCcEEeeccHHHHHH
Q psy15183 1019 SCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIH 1052 (1973)
Q Consensus 1019 DiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~ 1052 (1973)
|||+++|+++-+.+|.+++ ..-+++||++++.
T Consensus 152 DIGgGTT~iaVf~~G~l~~--T~~l~vGG~~IT~ 183 (475)
T PRK10719 152 DIGGGTANYALFDAGKVID--TACLNVGGRLIET 183 (475)
T ss_pred EeCCCceEEEEEECCEEEE--EEEEecccceEEE
Confidence 9999999999999999985 5578999998863
No 108
>PRK08517 DNA polymerase III subunit epsilon; Provisional
Probab=96.25 E-value=0.1 Score=62.39 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=96.7
Q ss_pred HhcCceeEEEeeeccCCccCCceeEEEEE---eCCce------EEEEcCCc---------------------hhhHHHHH
Q psy15183 1782 LKQQQEIAIDLEYHNYRSYQGYTCLMQIS---TRDKD------YIVDTLKL---------------------REDLEVLN 1831 (1973)
Q Consensus 1782 L~~a~~IavDlE~~~~~s~~g~v~LlQIS---t~~~~------~iiD~l~l---------------------~~~l~~L~ 1831 (1973)
+.....+.+|+|+.+..+..+. +++|+ ..++. .++.+-.+ ...+..+.
T Consensus 65 ~~~~~~vv~DiETTG~~~~~~~--IIEIGAv~v~~g~i~~~f~~~v~p~~ip~~~~~itGIt~e~l~~ap~~~evl~~f~ 142 (257)
T PRK08517 65 IKDQVFCFVDIETNGSKPKKHQ--IIEIGAVKVKNGEIIDRFESFVKAKEVPEYITELTGITYEDLENAPSLKEVLEEFR 142 (257)
T ss_pred CCCCCEEEEEEeCCCCCCCCCe--EEEEEEEEEECCEEEEEEEEEECCCCCChhhhhhcCcCHHHHcCCCCHHHHHHHHH
Confidence 4556789999999987765443 34444 11211 12222111 11234566
Q ss_pred HHHcCCCceEeecchHHHHHHHHH---hcCCcc--cccchHHHHHH-HCCCCCCcHHHHHHHHcCCCCCcccccccCCCC
Q psy15183 1832 EVLTDKNIVKVFHGADSDIKWLQK---DFGLYV--VGMFDTHQACK-FLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 1905 (1973)
Q Consensus 1832 ~lLedp~I~KV~Hg~K~Di~~Lqr---~~GI~l--~nlfDT~lAay-LL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~R 1905 (1973)
.++.+. +.|+||+.+|..+|.+ .+|... ...+||+-.++ ++..++++|+.|++. +|++....
T Consensus 143 ~fl~~~--v~VaHNa~FD~~fL~~~l~r~g~~~~~~~~ldtl~la~~~~~~~~~~L~~L~~~-lgi~~~~~--------- 210 (257)
T PRK08517 143 LFLGDS--VFVAHNVNFDYNFISRSLEEIGLGPLLNRKLCTIDLAKRTIESPRYGLSFLKEL-LGIEIEVH--------- 210 (257)
T ss_pred HHHCCC--eEEEECHHHHHHHHHHHHHHcCCCCCCCCcEehHHHHHHHccCCCCCHHHHHHH-cCcCCCCC---------
Confidence 676653 4689999999999864 345442 23678775554 455667899999875 57654311
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhhhcCCC
Q psy15183 1906 PLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKP 1962 (1973)
Q Consensus 1906 PLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~~~g~~~Ll~~V~~~s~~~~~~~y~k~ 1962 (1973)
+-|-.||.++..|+..+..++... ..-..+.++.|+..-+..+.++
T Consensus 211 -------HrAl~DA~ata~ll~~ll~~~~~~----~~t~~~L~~~~k~~~~~~~~~~ 256 (257)
T PRK08517 211 -------HRAYADALAAYEIFKICLLNLPSY----IKTTEDLIDFSKTAKTLKKKKP 256 (257)
T ss_pred -------CChHHHHHHHHHHHHHHHHHhHHh----hcCHHHHHHHhhhcccccCCCC
Confidence 127789999999999998887532 2235777777876666555543
No 109
>KOG0104|consensus
Probab=96.21 E-value=0.62 Score=61.15 Aligned_cols=189 Identities=16% Similarity=0.123 Sum_probs=112.3
Q ss_pred CCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC--Cccccceeccccccccccc-------------------
Q psy15183 867 SSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG--KKDGETQVGNDISNIEAVR------------------- 925 (1973)
Q Consensus 867 ~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~--~~~~~~~vGdea~~~~~~~------------------- 925 (1973)
...++=||.||..+|+|.-.-..|--|.=|--.|.+.+.. ..++.-++|+++..+....
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 3557889999999999998766776554444334333321 1122235555553322110
Q ss_pred ----cEEeecc-------cCCc---------ccCHH-HHHHHHHHHHh----hcCcCCCCCCCCcEEEEeCCCCcHHHHH
Q psy15183 926 ----FQLKTQF-------DKNV---------VTHYD-IQEQIFDYAFS----HLSINTEGNVNHPIVLTEPFLNPNYSRS 980 (1973)
Q Consensus 926 ----~~l~~Pi-------~~G~---------V~dwd-~le~i~~~if~----~L~i~~~~~~~~pVlltEp~~~p~~~Re 980 (1973)
|.-++|+ .++. .+..+ .+--++.|+-+ +.... -..+++|.|+++....|+
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~-----Ikd~ViTVP~~F~qaeR~ 175 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQP-----IKDMVITVPPFFNQAERR 175 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcc-----hhheEEeCCcccCHHHHH
Confidence 2222222 1221 12222 22334444431 22222 346999999999999999
Q ss_pred HHHHHHHHhcCCCeEeechhhHHhhhhcCC--------CCceEEEEeeCCCceEEEEeecCEEcc-------CCcEE---
Q psy15183 981 LMSELLFECYQVPSVCYGIDSLFSYQYNGW--------EGQSGVIISCGYQCTHVIPVINGCIDA-------SKAKR--- 1042 (1973)
Q Consensus 981 ~l~ElLFE~~~vpav~~~~~sllS~ya~G~--------g~~tgLVVDiG~s~T~V~PV~dG~vl~-------~si~r--- 1042 (1973)
.+.+-. .-.|..-++++.+..+++..+|. +++.-+|-|||.+.|+++-|.--.+-. ..++.
T Consensus 176 all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gv 254 (902)
T KOG0104|consen 176 ALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGV 254 (902)
T ss_pred HHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEee
Confidence 887654 44577778888888877776665 167889999999999988875221111 11222
Q ss_pred ---eeccHHHHHHHHHHHHhhh
Q psy15183 1043 ---IDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1043 ---l~vGG~~lt~~L~~lL~~k 1061 (1973)
..+||..++..|...|...
T Consensus 255 Gfd~tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 255 GFDRTLGGLEMTMRLRDHLANE 276 (902)
T ss_pred ccCCccchHHHHHHHHHHHHHH
Confidence 2368888888888777654
No 110
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=96.18 E-value=0.094 Score=65.36 Aligned_cols=198 Identities=16% Similarity=0.092 Sum_probs=116.8
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCC----C---C-c--------ccc---ceeccccccccccccEEe
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER----G---K-K--------DGE---TQVGNDISNIEAVRFQLK 929 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~----~---~-~--------~~~---~~vGdea~~~~~~~~~l~ 929 (1973)
.++=||+|-.++|.-+... ...+|+.++...... + . . +.. +++|+++...... ..
T Consensus 3 ~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~---~~ 76 (344)
T PRK13917 3 YVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNT---GK 76 (344)
T ss_pred eEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccc---cC
Confidence 3678999999999966522 246687776543111 1 0 0 112 6777775322210 00
Q ss_pred ec--ccCCcccCHHHHHHHHHHHHh-hcCcC-CCCCCCCcEEE-EeCCCCc--HHHHHHHHHHHHHh-----------cC
Q psy15183 930 TQ--FDKNVVTHYDIQEQIFDYAFS-HLSIN-TEGNVNHPIVL-TEPFLNP--NYSRSLMSELLFEC-----------YQ 991 (1973)
Q Consensus 930 ~P--i~~G~V~dwd~le~i~~~if~-~L~i~-~~~~~~~pVll-tEp~~~p--~~~Re~l~ElLFE~-----------~~ 991 (1973)
.+ ..... .-+....++..++. .+... +.+ .-.++| |--|... ...++.+.+.+-.. ..
T Consensus 77 ~~~~~~~~y--~~~~y~~L~~~Al~~~~~~~~~~~--~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~ 152 (344)
T PRK13917 77 DTYSTNDRY--DIKQFKTLVKCALAGLAARTVPEE--VVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTIN 152 (344)
T ss_pred Ccccccccc--cchhHHHHHHHHHHHhhhhhcCCC--cceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEE
Confidence 11 11222 23467778777762 22111 111 123333 3323222 22235565554222 34
Q ss_pred CCeEeechhhHHhhhhcCC-----------CCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhh
Q psy15183 992 VPSVCYGIDSLFSYQYNGW-----------EGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQL 1060 (1973)
Q Consensus 992 vpav~~~~~sllS~ya~G~-----------g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~ 1060 (1973)
|..|.+.++++.++|.... .....+|||||+.+|.++-+.+|.+....+..++.|+.++.+.+.+.+..
T Consensus 153 i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~ 232 (344)
T PRK13917 153 VKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISK 232 (344)
T ss_pred EEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHh
Confidence 5678888999888875432 01346999999999999999999999988888999999999999999965
Q ss_pred hCCCCCCCCCHHHHHHHH
Q psy15183 1061 KYPSHINSITPSRSEELL 1078 (1973)
Q Consensus 1061 k~~~~~~~~~~~~~e~iK 1078 (1973)
+... ..++...++.+.
T Consensus 233 ~~~~--~~~~~~~ie~~l 248 (344)
T PRK13917 233 KEEG--ASITPYMLEKGL 248 (344)
T ss_pred hCCC--CCCCHHHHHHHH
Confidence 5332 234445555554
No 111
>PRK06310 DNA polymerase III subunit epsilon; Validated
Probab=96.11 E-value=0.064 Score=63.90 Aligned_cols=132 Identities=18% Similarity=0.266 Sum_probs=85.0
Q ss_pred HhcCCeEEEEeeeccCCccCCcEEEEEEEe----CCc-----eEEEEccC-cc---------------------ccHHHH
Q psy15183 337 LKQQQEIAIDLEYHNYRSYQGYTCLMQIST----RDK-----DYIVDTLK-LR---------------------EDLEVL 385 (1973)
Q Consensus 337 L~~~~~IavDtE~~~~~s~~g~l~LIQIst----~~~-----~~lID~l~-l~---------------------~~l~~L 385 (1973)
|+....+.+|+|+++....... +|||+. .+. ..+|.|-. +. +.+..+
T Consensus 4 l~~~~~v~~D~ETTGl~~~~d~--IIEIa~v~v~~~~~~~~~~~li~P~~~I~~~a~~ihgIt~e~v~~~p~~~ev~~~~ 81 (250)
T PRK06310 4 LKDTEFVCLDCETTGLDVKKDR--IIEFAAIRFTFDEVIDSVEFLINPERVVSAESQRIHHISDAMLRDKPKIAEVFPQI 81 (250)
T ss_pred ccCCcEEEEEEeCCCCCCCCCe--EEEEEEEEEECCeEEEEEEEEECcCCCCCHhhhhccCcCHHHHhCCCCHHHHHHHH
Confidence 3456789999999987754443 344442 111 23454421 10 012345
Q ss_pred HHHHcCCCceeeecchhHhHHHHHHHh---CCcc----cceeehhhhhhhcC-CCCccHHHHHHHHcCCCCCcccccccC
Q psy15183 386 NEVLTDKNIVKVFHGADSDIKWLQKDF---GLYV----VGMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTFQLFDW 457 (1973)
Q Consensus 386 ~~lL~dp~I~KV~H~ak~Dl~~L~r~~---Gi~~----~nlFDT~lAA~lLg-~~~~sLa~Lv~~ylgv~ldK~~q~sDW 457 (1973)
.+++.+.. .-|+||+.+|+.+|.+.+ |+.. ..++||+-.++.++ .++++|+.|++.| |+....
T Consensus 82 ~~fl~~~~-~lvghn~~FD~~~L~~~~~r~g~~~~~~~~~~iDtl~lar~~~~~~~~~L~~l~~~~-g~~~~~------- 152 (250)
T PRK06310 82 KGFFKEGD-YIVGHSVGFDLQVLSQESERIGETFLSKHYYIIDTLRLAKEYGDSPNNSLEALAVHF-NVPYDG------- 152 (250)
T ss_pred HHHhCCCC-EEEEECHHHHHHHHHHHHHHcCCCccccCCcEEehHHHHHhcccCCCCCHHHHHHHC-CCCCCC-------
Confidence 55665533 458999999999986543 5432 45799998888776 3568999998776 654322
Q ss_pred CCCCCCchhHhHHHHhHHHHHHHHHHHHHHH
Q psy15183 458 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 488 (1973)
Q Consensus 458 ~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L 488 (1973)
.+=|..||..+..|+..|..++
T Consensus 153 ---------aH~Al~Da~at~~vl~~l~~~~ 174 (250)
T PRK06310 153 ---------NHRAMKDVEINIKVFKHLCKRF 174 (250)
T ss_pred ---------CcChHHHHHHHHHHHHHHHHhc
Confidence 1338899999999999886554
No 112
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins. This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clus
Probab=96.09 E-value=0.018 Score=63.36 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHhcCCcccccchHHHHHHHCC---CCCCcHHHHHHHHcCCCCCcccccccCCC
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP---MPRQSLAYLLKHYCDVDSDKTFQLFDWRH 1904 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~---~~~~sLa~La~~yLg~~l~K~~q~sdW~~ 1904 (1973)
..|..++.+ .+ -|+||+.+|+.+|. .+.....++||........ ..+++|+.|+++|+|++.....
T Consensus 69 ~~l~~~l~~-~v-lVgHn~~fD~~~L~--~~~~~~~~~dt~~l~~~~~~~~~~~~sL~~l~~~~lgi~~~~~~------- 137 (152)
T cd06144 69 KKVAELLKG-RI-LVGHALKNDLKVLK--LDHPKKLIRDTSKYKPLRKTAKGKSPSLKKLAKQLLGLDIQEGE------- 137 (152)
T ss_pred HHHHHHhCC-CE-EEEcCcHHHHHHhc--CcCCCccEEEeEEeeccccccCCCChhHHHHHHHHcCcccCCCC-------
Confidence 456677765 44 49999999999997 3333335678766444433 3568999999999997653211
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy15183 1905 RPLPEPAIQYARTDTHYLLYVYD 1927 (1973)
Q Consensus 1905 RPLs~eqi~YAa~DA~~LL~Lyd 1927 (1973)
+-|..||..+..||+
T Consensus 138 --------H~Al~DA~at~~l~~ 152 (152)
T cd06144 138 --------HSSVEDARAAMRLYR 152 (152)
T ss_pred --------cCcHHHHHHHHHHhC
Confidence 126789999988873
No 113
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=95.95 E-value=0.014 Score=77.81 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHh
Q psy15183 537 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 610 (1973)
Q Consensus 537 ~ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~ 610 (1973)
....++.+|-.||.++|++.+.|+..|++|..|.+||+.+|+|..++.++.|....-+.+|+.+++++|+...+
T Consensus 531 ~~~~l~~~Lr~~R~~~a~~~~~~~~~if~d~tL~~ia~~~P~t~~~l~~i~Gvg~~K~~~yg~~~l~~i~~~~~ 604 (607)
T PRK11057 531 YDRKLFAKLRKLRKSIADEENIPPYVVFNDATLIEMAEQMPITASEMLSVNGVGQRKLERFGKPFMALIRAHVD 604 (607)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCeEEECHHHHHHHHHHCCCCHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999998899999999999999987653
No 114
>PRK06310 DNA polymerase III subunit epsilon; Validated
Probab=95.91 E-value=0.1 Score=62.18 Aligned_cols=132 Identities=18% Similarity=0.258 Sum_probs=83.3
Q ss_pred HhcCceeEEEeeeccCCccCCceeEEEEEe----CCc-----eEEEEcC-Cch---------------------hhHHHH
Q psy15183 1782 LKQQQEIAIDLEYHNYRSYQGYTCLMQIST----RDK-----DYIVDTL-KLR---------------------EDLEVL 1830 (1973)
Q Consensus 1782 L~~a~~IavDlE~~~~~s~~g~v~LlQISt----~~~-----~~iiD~l-~l~---------------------~~l~~L 1830 (1973)
|+....+.||+|+++..+.... +++|+. .+. ..++.+- .+. ..+..+
T Consensus 4 l~~~~~v~~D~ETTGl~~~~d~--IIEIa~v~v~~~~~~~~~~~li~P~~~I~~~a~~ihgIt~e~v~~~p~~~ev~~~~ 81 (250)
T PRK06310 4 LKDTEFVCLDCETTGLDVKKDR--IIEFAAIRFTFDEVIDSVEFLINPERVVSAESQRIHHISDAMLRDKPKIAEVFPQI 81 (250)
T ss_pred ccCCcEEEEEEeCCCCCCCCCe--EEEEEEEEEECCeEEEEEEEEECcCCCCCHhhhhccCcCHHHHhCCCCHHHHHHHH
Confidence 3456789999999987654433 344441 111 1223321 010 012345
Q ss_pred HHHHcCCCceEeecchHHHHHHHHHh---cCCcc----cccchHHHHHHHCC-CCCCcHHHHHHHHcCCCCCcccccccC
Q psy15183 1831 NEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV----VGMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTFQLFDW 1902 (1973)
Q Consensus 1831 ~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l----~nlfDT~lAayLL~-~~~~sLa~La~~yLg~~l~K~~q~sdW 1902 (1973)
.+++.+. -.-|+||+.+|+.+|.+. .|+.. ..++||+-.++.++ .++++|+.|++.| |++...
T Consensus 82 ~~fl~~~-~~lvghn~~FD~~~L~~~~~r~g~~~~~~~~~~iDtl~lar~~~~~~~~~L~~l~~~~-g~~~~~------- 152 (250)
T PRK06310 82 KGFFKEG-DYIVGHSVGFDLQVLSQESERIGETFLSKHYYIIDTLRLAKEYGDSPNNSLEALAVHF-NVPYDG------- 152 (250)
T ss_pred HHHhCCC-CEEEEECHHHHHHHHHHHHHHcCCCccccCCcEEehHHHHHhcccCCCCCHHHHHHHC-CCCCCC-------
Confidence 5566543 356999999999988643 35543 34789999888876 3568999999876 654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1903 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 1933 (1973)
Q Consensus 1903 ~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL 1933 (1973)
. +-|..||.++..|+..+..++
T Consensus 153 a---------H~Al~Da~at~~vl~~l~~~~ 174 (250)
T PRK06310 153 N---------HRAMKDVEINIKVFKHLCKRF 174 (250)
T ss_pred C---------cChHHHHHHHHHHHHHHHHhc
Confidence 1 227889999999999887654
No 115
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins. This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clus
Probab=95.79 E-value=0.047 Score=60.01 Aligned_cols=80 Identities=21% Similarity=0.169 Sum_probs=56.3
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHHhCCcccceeehhhhhhhcC---CCCccHHHHHHHHcCCCCCcccccccCCC
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP---MPRQSLAYLLKHYCDVDSDKTFQLFDWRH 459 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg---~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~ 459 (1973)
..|..++.+ .+ -|+||+.+|+.+|. .+.....++||.....+.. ..+++|+.|+++|+|+.+....
T Consensus 69 ~~l~~~l~~-~v-lVgHn~~fD~~~L~--~~~~~~~~~dt~~l~~~~~~~~~~~~sL~~l~~~~lgi~~~~~~------- 137 (152)
T cd06144 69 KKVAELLKG-RI-LVGHALKNDLKVLK--LDHPKKLIRDTSKYKPLRKTAKGKSPSLKKLAKQLLGLDIQEGE------- 137 (152)
T ss_pred HHHHHHhCC-CE-EEEcCcHHHHHHhc--CcCCCccEEEeEEeeccccccCCCChhHHHHHHHHcCcccCCCC-------
Confidence 456777776 44 49999999999993 3443456789876544443 3568999999999997654211
Q ss_pred CCCCchhHhHHHHhHHHHHHHH
Q psy15183 460 RPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 460 RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
+=|..||..+..||
T Consensus 138 --------H~Al~DA~at~~l~ 151 (152)
T cd06144 138 --------HSSVEDARAAMRLY 151 (152)
T ss_pred --------cCcHHHHHHHHHHh
Confidence 22778999888876
No 116
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=95.75 E-value=0.11 Score=63.89 Aligned_cols=134 Identities=17% Similarity=0.144 Sum_probs=87.7
Q ss_pred CCeEEEEeeeccCCccCCcEEEEEEE-e-CCc------eEEEEccC------c---c-----------ccHHHHHHHHcC
Q psy15183 340 QQEIAIDLEYHNYRSYQGYTCLMQIS-T-RDK------DYIVDTLK------L---R-----------EDLEVLNEVLTD 391 (1973)
Q Consensus 340 ~~~IavDtE~~~~~s~~g~l~LIQIs-t-~~~------~~lID~l~------l---~-----------~~l~~L~~lL~d 391 (1973)
...++||+|+.+.++....++-|.+. . .++ ..+|.|-. + . +.+..|.+++.+
T Consensus 15 ~~fvvlD~ETTGl~p~~d~IIeIgav~v~~~g~i~~~~~~lv~P~~~~~~~~IhGIt~e~l~~ap~f~ev~~~l~~~l~~ 94 (313)
T PRK06063 15 RGWAVVDVETSGFRPGQARIISLAVLGLDADGNVEQSVVTLLNPGVDPGPTHVHGLTAEMLEGQPQFADIAGEVAELLRG 94 (313)
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEECCceeeeEEEEEECcCCCCCCeecCCCCHHHHhCCCCHHHHHHHHHHHcCC
Confidence 35789999999887655544332221 1 111 23454421 0 0 112456666665
Q ss_pred CCceeeecchhHhHHHHHHHh---CCc--ccceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccCCCCCCCc
Q psy15183 392 KNIVKVFHGADSDIKWLQKDF---GLY--VVGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 464 (1973)
Q Consensus 392 p~I~KV~H~ak~Dl~~L~r~~---Gi~--~~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~ 464 (1973)
. +-|+||+.+|+.+|.+.+ |+. ....+||+..++.+. ..+++|..|+++ +|+....
T Consensus 95 ~--~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~ldTl~lar~~~~~~~~~kL~~l~~~-~gi~~~~-------------- 157 (313)
T PRK06063 95 R--TLVAHNVAFDYSFLAAEAERAGAELPVDQVMCTVELARRLGLGLPNLRLETLAAH-WGVPQQR-------------- 157 (313)
T ss_pred C--EEEEeCHHHHHHHHHHHHHHcCCCCCCCCEEehHHHHHHhccCCCCCCHHHHHHH-cCCCCCC--------------
Confidence 3 458999999999997654 443 245789998887664 557899999986 4654321
Q ss_pred hhHhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 465 PAIQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 465 eql~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
-+-|..||..+..|+..+..++.+.+
T Consensus 158 --~H~Al~DA~ata~l~~~ll~~~~~~~ 183 (313)
T PRK06063 158 --PHDALDDARVLAGILRPSLERARERD 183 (313)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 13388999999999999988888776
No 117
>PRK06807 DNA polymerase III subunit epsilon; Validated
Probab=95.68 E-value=0.11 Score=63.78 Aligned_cols=129 Identities=22% Similarity=0.250 Sum_probs=82.9
Q ss_pred CeEEEEeeeccCCccCCcEEEEEEEe---CCc------eEEEEccC-c---------------------cccHHHHHHHH
Q psy15183 341 QEIAIDLEYHNYRSYQGYTCLMQIST---RDK------DYIVDTLK-L---------------------REDLEVLNEVL 389 (1973)
Q Consensus 341 ~~IavDtE~~~~~s~~g~l~LIQIst---~~~------~~lID~l~-l---------------------~~~l~~L~~lL 389 (1973)
..+++|+|+.+.++..+. ++||+. .++ ..+|.|-. + .+.+..|.+++
T Consensus 9 ~~Vv~DlETTGl~p~~~e--IIEIgaV~v~~g~i~~~f~~lVkP~~~I~~~a~~ihGIT~e~l~~~~~~~evl~~f~~fl 86 (313)
T PRK06807 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLPLFLAFL 86 (313)
T ss_pred CEEEEEEECCCCCCCCCe--EEEEEEEEEECCEEEEEEEEEECcCCCCCHhhhccCCCCHHHHhCCCCHHHHHHHHHHHH
Confidence 578999999887765443 456652 111 12333311 0 01123455566
Q ss_pred cCCCceeeecchhHhHHHHHHHh---CCc--ccceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccCCCCCC
Q psy15183 390 TDKNIVKVFHGADSDIKWLQKDF---GLY--VVGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 462 (1973)
Q Consensus 390 ~dp~I~KV~H~ak~Dl~~L~r~~---Gi~--~~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPL 462 (1973)
.+.. -|+||+.+|+..|.+.+ |+. ....+||+..++.+. .+.++|..|++. +|+.. .
T Consensus 87 ~~~~--lVaHNa~FD~~fL~~~~~~~gl~~~~~~~iDtl~la~~~~~~~~~~kL~~L~~~-lgi~~-~------------ 150 (313)
T PRK06807 87 HTNV--IVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRM-LGIRL-S------------ 150 (313)
T ss_pred cCCe--EEEEcHHHHHHHHHHHHHHcCCCCCCCCEeeHHHHHHHHhCCCCCCCHHHHHHH-cCCCC-C------------
Confidence 5543 38999999999997654 442 245789988666443 456899999865 56543 1
Q ss_pred CchhHhHHHHhHHHHHHHHHHHHHHHHHh
Q psy15183 463 PEPAIQYARTDTHYLLYVYDCMKLDLSAA 491 (1973)
Q Consensus 463 s~eql~YAa~Da~~Ll~L~d~L~~~L~e~ 491 (1973)
.+=|..||.++..|+..+.......
T Consensus 151 ----~H~Al~DA~~ta~l~~~l~~~~~~~ 175 (313)
T PRK06807 151 ----SHNAFDDCITCAAVYQKCASIEEEA 175 (313)
T ss_pred ----CcChHHHHHHHHHHHHHHHHhhhhc
Confidence 1337899999999999998887533
No 118
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins. This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong prefere
Probab=95.63 E-value=0.097 Score=58.16 Aligned_cols=79 Identities=15% Similarity=0.049 Sum_probs=54.7
Q ss_pred HHHHHcCCCceEeecchHHHHHHHHHhcCCcccccchHHHHHHHCC--C---CCCcHHHHHHHHcCCCCCcccccccCCC
Q psy15183 1830 LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP--M---PRQSLAYLLKHYCDVDSDKTFQLFDWRH 1904 (1973)
Q Consensus 1830 L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~--~---~~~sLa~La~~yLg~~l~K~~q~sdW~~ 1904 (1973)
|.+++.+. -+-||||+.+|+.+|.. . ...+.||...++.+. . .+++|..|+++|+|.+....+..
T Consensus 77 ~~~~i~~~-~vlVgHn~~fD~~fL~~-~---~~~~iDT~~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~----- 146 (161)
T cd06137 77 LWKFIDPD-TILVGHSLQNDLDALRM-I---HTRVVDTAILTREAVKGPLAKRQWSLRTLCRDFLGLKIQGGGEG----- 146 (161)
T ss_pred HHHhcCCC-cEEEeccHHHHHHHHhC-c---CCCeeEehhhhhhccCCCcCCCCccHHHHHHHHCCchhcCCCCC-----
Confidence 44455432 44699999999999973 1 234789999887664 2 46899999999999765431111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy15183 1905 RPLPEPAIQYARTDTHYLLYVY 1926 (1973)
Q Consensus 1905 RPLs~eqi~YAa~DA~~LL~Ly 1926 (1973)
+-|..||.++..||
T Consensus 147 --------H~A~~DA~at~~l~ 160 (161)
T cd06137 147 --------HDSLEDALAAREVV 160 (161)
T ss_pred --------CCcHHHHHHHHHHh
Confidence 11667888887776
No 119
>PRK08517 DNA polymerase III subunit epsilon; Provisional
Probab=95.62 E-value=0.23 Score=59.52 Aligned_cols=133 Identities=20% Similarity=0.283 Sum_probs=85.2
Q ss_pred HhcCCeEEEEeeeccCCccCCcEEEEEEEe---CCc------eEEEEccCcc---------------------ccHHHHH
Q psy15183 337 LKQQQEIAIDLEYHNYRSYQGYTCLMQIST---RDK------DYIVDTLKLR---------------------EDLEVLN 386 (1973)
Q Consensus 337 L~~~~~IavDtE~~~~~s~~g~l~LIQIst---~~~------~~lID~l~l~---------------------~~l~~L~ 386 (1973)
+.....+.+|+|+.+..+..+. +|+|+. .++ ..+|.|-.+. ..+..|.
T Consensus 65 ~~~~~~vv~DiETTG~~~~~~~--IIEIGAv~v~~g~i~~~f~~~v~p~~ip~~~~~itGIt~e~l~~ap~~~evl~~f~ 142 (257)
T PRK08517 65 IKDQVFCFVDIETNGSKPKKHQ--IIEIGAVKVKNGEIIDRFESFVKAKEVPEYITELTGITYEDLENAPSLKEVLEEFR 142 (257)
T ss_pred CCCCCEEEEEEeCCCCCCCCCe--EEEEEEEEEECCEEEEEEEEEECCCCCChhhhhhcCcCHHHHcCCCCHHHHHHHHH
Confidence 3456789999999987765543 445442 121 1244332110 1234566
Q ss_pred HHHcCCCceeeecchhHhHHHHHH---HhCCcc--cceeehhhhhh-hcCCCCccHHHHHHHHcCCCCCcccccccCCCC
Q psy15183 387 EVLTDKNIVKVFHGADSDIKWLQK---DFGLYV--VGMFDTHQACK-FLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHR 460 (1973)
Q Consensus 387 ~lL~dp~I~KV~H~ak~Dl~~L~r---~~Gi~~--~nlFDT~lAA~-lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~R 460 (1973)
+++.+. +.|+||+.+|..+|.+ .+|... ...+||+-.++ ++..++++|++|++. +|+....
T Consensus 143 ~fl~~~--v~VaHNa~FD~~fL~~~l~r~g~~~~~~~~ldtl~la~~~~~~~~~~L~~L~~~-lgi~~~~---------- 209 (257)
T PRK08517 143 LFLGDS--VFVAHNVNFDYNFISRSLEEIGLGPLLNRKLCTIDLAKRTIESPRYGLSFLKEL-LGIEIEV---------- 209 (257)
T ss_pred HHHCCC--eEEEECHHHHHHHHHHHHHHcCCCCCCCCcEehHHHHHHHccCCCCCHHHHHHH-cCcCCCC----------
Confidence 666653 3589999999999864 345442 45678875543 455667899999874 5765432
Q ss_pred CCCchhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15183 461 PLPEPAIQYARTDTHYLLYVYDCMKLDLSA 490 (1973)
Q Consensus 461 PLs~eql~YAa~Da~~Ll~L~d~L~~~L~e 490 (1973)
.+=|..||..+..|+..+..++..
T Consensus 210 ------~HrAl~DA~ata~ll~~ll~~~~~ 233 (257)
T PRK08517 210 ------HHRAYADALAAYEIFKICLLNLPS 233 (257)
T ss_pred ------CCChHHHHHHHHHHHHHHHHHhHH
Confidence 133789999999999999887754
No 120
>PRK07740 hypothetical protein; Provisional
Probab=95.61 E-value=0.18 Score=60.01 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=65.6
Q ss_pred HHHHHHcCCCceeeecchhHhHHHHHHH----hCCcc-cceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCccccccc
Q psy15183 384 VLNEVLTDKNIVKVFHGADSDIKWLQKD----FGLYV-VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFD 456 (1973)
Q Consensus 384 ~L~~lL~dp~I~KV~H~ak~Dl~~L~r~----~Gi~~-~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sD 456 (1973)
.|.+++.+. .-|+||+.+|..+|.+. ++... ..++||+..++.+. ...++|.+|+.. +|+.....
T Consensus 134 ~f~~fi~~~--~lVahna~fD~~fL~~~~~~~~~~~~~~~~iDt~~l~r~l~~~~~~~sL~~l~~~-~gi~~~~~----- 205 (244)
T PRK07740 134 RFYAFIGAG--VLVAHHAGHDKAFLRHALWRTYRQPFTHRLIDTMFLTKLLAHERDFPTLDDALAY-YGIPIPRR----- 205 (244)
T ss_pred HHHHHhCCC--EEEEeCHHHHHHHHHHHHHHhcCCCcCCCeechHHHHHHHcCCCCCCCHHHHHHH-CCcCCCCC-----
Confidence 444555543 45899999999988543 23333 46889998887664 336899999864 67654321
Q ss_pred CCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 457 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 457 W~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
+-|..||..+..|+..+..++.+.|.
T Consensus 206 -----------H~Al~Da~ata~l~~~ll~~~~~~~~ 231 (244)
T PRK07740 206 -----------HHALGDALMTAKLWAILLVEAQQRGI 231 (244)
T ss_pred -----------CCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23789999999999999999988773
No 121
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins. Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and repli
Probab=95.54 E-value=0.081 Score=58.61 Aligned_cols=82 Identities=23% Similarity=0.085 Sum_probs=53.0
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHHhCCcccceeehhh---hhhhcC---CCCccHHHHHHHHcCCCCCccccccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQ---ACKFLP---MPRQSLAYLLKHYCDVDSDKTFQLFD 456 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~l---AA~lLg---~~~~sLa~Lv~~ylgv~ldK~~q~sD 456 (1973)
..|.+++.+ -+-|+||+++|+.+|... ....++.||.. +.+..+ ...++|..|+++|++..+...++.
T Consensus 69 ~~l~~~l~~--~vlV~Hn~~~D~~~l~~~--~~~~~~~Dt~~l~~~~~~~~~p~~~~~~L~~L~~~~~~~~i~~~~~~-- 142 (157)
T cd06149 69 KEILKILKG--KVVVGHAIHNDFKALKYF--HPKHMTRDTSTIPLLNRKAGFPENCRVSLKVLAKRLLHRDIQVGRQG-- 142 (157)
T ss_pred HHHHHHcCC--CEEEEeCcHHHHHHhccc--CCCcCEEECcccccchhhcCCcccCChhHHHHHHHHcChhhcCCCCC--
Confidence 456667754 345999999999999422 22345778854 222222 345899999999987655432221
Q ss_pred CCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 457 WRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 457 W~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
.| |..||..+..||
T Consensus 143 --H~---------Al~DA~at~~l~ 156 (157)
T cd06149 143 --HS---------SVEDARATMELY 156 (157)
T ss_pred --cC---------cHHHHHHHHHHh
Confidence 12 668888888776
No 122
>PRK07942 DNA polymerase III subunit epsilon; Provisional
Probab=95.52 E-value=0.19 Score=59.31 Aligned_cols=136 Identities=21% Similarity=0.208 Sum_probs=84.8
Q ss_pred cCCeEEEEeeeccCCccCCcEEE---EEEEeCC-----ceEEEEccC-cc-----------ccH--------HHHHH---
Q psy15183 339 QQQEIAIDLEYHNYRSYQGYTCL---MQISTRD-----KDYIVDTLK-LR-----------EDL--------EVLNE--- 387 (1973)
Q Consensus 339 ~~~~IavDtE~~~~~s~~g~l~L---IQIst~~-----~~~lID~l~-l~-----------~~l--------~~L~~--- 387 (1973)
....++||+|+.+.++..+.++- +.+...+ ..++|+|-. +. +.+ ..|.+
T Consensus 5 ~~~~vv~D~ETTGl~p~~d~Iieig~v~v~~~g~~~~~~~~lv~P~~~i~~~a~~IhGIt~e~l~~~g~~~~~vl~e~~~ 84 (232)
T PRK07942 5 PGPLAAFDLETTGVDPETARIVTAALVVVDADGEVVESREWLADPGVEIPEEASAVHGITTEYARAHGRPAAEVLAEIAD 84 (232)
T ss_pred cCcEEEEEeccCCCCCCCCeeEEEEEEEEeCCCccccceEEEECCCCCCCHHHHHHhCCCHHHHHhhCCCHHHHHHHHHH
Confidence 45679999999998876554422 2222111 135777621 10 001 12222
Q ss_pred H----HcCCCceeeecchhHhHHHHHHHh---CCc---ccceeehhhhhhhcC---CCCccHHHHHHHHcCCCCCccccc
Q psy15183 388 V----LTDKNIVKVFHGADSDIKWLQKDF---GLY---VVGMFDTHQACKFLP---MPRQSLAYLLKHYCDVDSDKTFQL 454 (1973)
Q Consensus 388 l----L~dp~I~KV~H~ak~Dl~~L~r~~---Gi~---~~nlFDT~lAA~lLg---~~~~sLa~Lv~~ylgv~ldK~~q~ 454 (1973)
. +.. ..+-|+||+.+|+.+|.+.+ |+. ...++||+..++.+. .++++|..|+++| |+.....
T Consensus 85 ~l~~~~~~-~~~lVahNa~FD~~fL~~~~~r~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~-gi~~~~a--- 159 (232)
T PRK07942 85 ALREAWAR-GVPVVVFNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKAVDRYRKGKRTLTALCEHY-GVRLDNA--- 159 (232)
T ss_pred HHHHHhhc-CCEEEEeCcHhhHHHHHHHHHHcCCCCccCCcEeeHHHHHhhhhcccCCCCCHHHHHHHc-CCCCCCC---
Confidence 2 223 33459999999999886543 432 246789988776553 3457999999774 7654321
Q ss_pred ccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 455 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 455 sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
+=|..||..+..|+..|..+..+.+
T Consensus 160 -------------H~Al~Da~ata~l~~~l~~~~~~l~ 184 (232)
T PRK07942 160 -------------HEATADALAAARVAWALARRFPELA 184 (232)
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHHHhh
Confidence 2288999999999999988776554
No 123
>PRK07942 DNA polymerase III subunit epsilon; Provisional
Probab=95.40 E-value=0.33 Score=57.30 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=56.1
Q ss_pred ceEeecchHHHHHHHHHh---cCCc-c--cccchHHHHHHHCC---CCCCcHHHHHHHHcCCCCCcccccccCCCCCCCH
Q psy15183 1839 IVKVFHGADSDIKWLQKD---FGLY-V--VGMFDTHQACKFLP---MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 1909 (1973)
Q Consensus 1839 I~KV~Hg~K~Di~~Lqr~---~GI~-l--~nlfDT~lAayLL~---~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~ 1909 (1973)
.+-|+||+.+|+.+|.+. +|+. + ..++||+..++.+. ..+++|..|+++| |+.....
T Consensus 94 ~~lVahNa~FD~~fL~~~~~r~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~-gi~~~~a------------- 159 (232)
T PRK07942 94 VPVVVFNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKAVDRYRKGKRTLTALCEHY-GVRLDNA------------- 159 (232)
T ss_pred CEEEEeCcHhhHHHHHHHHHHcCCCCccCCcEeeHHHHHhhhhcccCCCCCHHHHHHHc-CCCCCCC-------------
Confidence 445999999999888643 4543 1 24789998877654 2457999999875 6554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1910 PAIQYARTDTHYLLYVYDCMKLDLS 1934 (1973)
Q Consensus 1910 eqi~YAa~DA~~LL~Lyd~L~~eL~ 1934 (1973)
+-|..||..+..|+..|..+..
T Consensus 160 ---H~Al~Da~ata~l~~~l~~~~~ 181 (232)
T PRK07942 160 ---HEATADALAAARVAWALARRFP 181 (232)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHH
Confidence 1277899999999999877664
No 124
>TIGR01298 RNaseT ribonuclease T. in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases.
Probab=95.38 E-value=0.22 Score=57.36 Aligned_cols=84 Identities=19% Similarity=0.106 Sum_probs=60.7
Q ss_pred ceeeecchhHhHHHHHHH---hCCc-----ccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCch
Q psy15183 394 IVKVFHGADSDIKWLQKD---FGLY-----VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 465 (1973)
Q Consensus 394 I~KV~H~ak~Dl~~L~r~---~Gi~-----~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~e 465 (1973)
-+-|+||+.+|+.+|.+. +|.. ....+||+..++.+. +..+|..++++| |+... ..
T Consensus 106 ~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~lDTl~lar~~~-~~~~L~~l~~~~-gi~~~--------------~~ 169 (200)
T TIGR01298 106 AILVGHNANFDLGFLNAAVERTSLKRNPFHPFSTFDTATLAGLAY-GQTVLAKACQAA-GXDFD--------------ST 169 (200)
T ss_pred CEEEEECchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHHHHHc-CcccHHHHHHHc-CCCcc--------------cc
Confidence 346999999999998644 3432 124789988877653 456899988864 65431 12
Q ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 466 AIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 466 ql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
+.+=|..||..+..|+..|..++.+.+.
T Consensus 170 ~~H~Al~Da~ata~lf~~l~~~~~~~~~ 197 (200)
T TIGR01298 170 QAHSALYDTEKTAELFCEIVNRWKRLGG 197 (200)
T ss_pred chhhhHHhHHHHHHHHHHHHHHHHHccC
Confidence 3345889999999999999999988773
No 125
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins. This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong prefere
Probab=95.33 E-value=0.15 Score=56.69 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=55.2
Q ss_pred HHHHHHcCCCceeeecchhHhHHHHHHHhCCcccceeehhhhhhhcC--C---CCccHHHHHHHHcCCCCCcccccccCC
Q psy15183 384 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP--M---PRQSLAYLLKHYCDVDSDKTFQLFDWR 458 (1973)
Q Consensus 384 ~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg--~---~~~sLa~Lv~~ylgv~ldK~~q~sDW~ 458 (1973)
.|.+++.+.. +-|+||+.+|+.+|.. ....+.||...++.+. . .+++|..|+.+|+|..+...+..
T Consensus 76 ~~~~~i~~~~-vlVgHn~~fD~~fL~~----~~~~~iDT~~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~---- 146 (161)
T cd06137 76 ALWKFIDPDT-ILVGHSLQNDLDALRM----IHTRVVDTAILTREAVKGPLAKRQWSLRTLCRDFLGLKIQGGGEG---- 146 (161)
T ss_pred HHHHhcCCCc-EEEeccHHHHHHHHhC----cCCCeeEehhhhhhccCCCcCCCCccHHHHHHHHCCchhcCCCCC----
Confidence 3555565423 4599999999999942 2346789988887654 2 46899999999999765431111
Q ss_pred CCCCCchhHhHHHHhHHHHHHHH
Q psy15183 459 HRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 459 ~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
+=|..||..+..||
T Consensus 147 ---------H~A~~DA~at~~l~ 160 (161)
T cd06137 147 ---------HDSLEDALAAREVV 160 (161)
T ss_pred ---------CCcHHHHHHHHHHh
Confidence 22668888887765
No 126
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins. This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T.
Probab=95.31 E-value=0.12 Score=56.80 Aligned_cols=80 Identities=21% Similarity=0.179 Sum_probs=54.4
Q ss_pred HHHHHHcCCCceEeecchHHHHHHHHHhcCCcccccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCcccccccCCCCC
Q psy15183 1829 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 1906 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~sdW~~RP 1906 (1973)
.+.+++. ++-+-|+||+.+|+.+|.. . ...++||...++.+. ..+++|..|+++|++..+....+ +.|
T Consensus 68 ~~~~fl~-~~~vlVgHn~~fD~~fL~~-~---~~~~iDT~~l~r~~~~~~~~~~L~~L~~~~~~~~i~~~~~----~H~- 137 (150)
T cd06145 68 KLLSLIS-PDTILVGHSLENDLKALKL-I---HPRVIDTAILFPHPRGPPYKPSLKNLAKKYLGRDIQQGEG----GHD- 137 (150)
T ss_pred HHHHHhC-CCCEEEEcChHHHHHHhhc-c---CCCEEEcHHhccccCCCCCChhHHHHHHHHCCcceeCCCC----CCC-
Confidence 4555664 2345699999999999973 2 234789998776543 34579999999999855422111 112
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q psy15183 1907 LPEPAIQYARTDTHYLLYVY 1926 (1973)
Q Consensus 1907 Ls~eqi~YAa~DA~~LL~Ly 1926 (1973)
|..||.++..||
T Consensus 138 --------Al~DA~~t~~l~ 149 (150)
T cd06145 138 --------SVEDARAALELV 149 (150)
T ss_pred --------cHHHHHHHHHHh
Confidence 667998888876
No 127
>PRK06807 DNA polymerase III subunit epsilon; Validated
Probab=95.25 E-value=0.34 Score=59.70 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=60.3
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCCc-cc-ccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCcccccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLY-VV-GMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLF 1900 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~-l~-nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~s 1900 (1973)
..|.+++.+. + -|+||+.+|+.+|.+. +|+. +. ..+||+..++.+. .++++|..|+++ +|+.. . .
T Consensus 80 ~~f~~fl~~~-~-lVaHNa~FD~~fL~~~~~~~gl~~~~~~~iDtl~la~~~~~~~~~~kL~~L~~~-lgi~~-~---~- 151 (313)
T PRK06807 80 PLFLAFLHTN-V-IVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRM-LGIRL-S---S- 151 (313)
T ss_pred HHHHHHHcCC-e-EEEEcHHHHHHHHHHHHHHcCCCCCCCCEeeHHHHHHHHhCCCCCCCHHHHHHH-cCCCC-C---C-
Confidence 3455566543 3 3999999999998754 3553 22 4789988766553 457799999865 46543 1 1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1901 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 1934 (1973)
Q Consensus 1901 dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~ 1934 (1973)
+-|..||.++..||..+.....
T Consensus 152 ------------H~Al~DA~~ta~l~~~l~~~~~ 173 (313)
T PRK06807 152 ------------HNAFDDCITCAAVYQKCASIEE 173 (313)
T ss_pred ------------cChHHHHHHHHHHHHHHHHhhh
Confidence 2277899999999999988774
No 128
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins. Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and repli
Probab=95.10 E-value=0.12 Score=57.26 Aligned_cols=83 Identities=23% Similarity=0.086 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHhcCCcccccchHHH---HHHHCC---CCCCcHHHHHHHHcCCCCCccccccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQ---ACKFLP---MPRQSLAYLLKHYCDVDSDKTFQLFD 1901 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~l---AayLL~---~~~~sLa~La~~yLg~~l~K~~q~sd 1901 (1973)
..|.+++.+ -+-|+||+++|+.+|... .....+.||.. +.+... ..+++|..|+++|++..+...++.
T Consensus 69 ~~l~~~l~~--~vlV~Hn~~~D~~~l~~~--~~~~~~~Dt~~l~~~~~~~~~p~~~~~~L~~L~~~~~~~~i~~~~~~-- 142 (157)
T cd06149 69 KEILKILKG--KVVVGHAIHNDFKALKYF--HPKHMTRDTSTIPLLNRKAGFPENCRVSLKVLAKRLLHRDIQVGRQG-- 142 (157)
T ss_pred HHHHHHcCC--CEEEEeCcHHHHHHhccc--CCCcCEEECcccccchhhcCCcccCChhHHHHHHHHcChhhcCCCCC--
Confidence 355556643 456999999999999732 11224567754 222221 345799999999987655432221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15183 1902 WRHRPLPEPAIQYARTDTHYLLYVYD 1927 (1973)
Q Consensus 1902 W~~RPLs~eqi~YAa~DA~~LL~Lyd 1927 (1973)
.| |..||.++..||+
T Consensus 143 --H~---------Al~DA~at~~l~~ 157 (157)
T cd06149 143 --HS---------SVEDARATMELYK 157 (157)
T ss_pred --cC---------cHHHHHHHHHHhC
Confidence 12 6679999888873
No 129
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=95.10 E-value=0.13 Score=63.38 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=94.0
Q ss_pred eEEEEcCcceEEEEEeCCCC-ccEEEecceeeccCCCCCccccceecccc---ccccccccEEeecccCCccc----CH-
Q psy15183 870 PIVFDNGAWCCRVGWASCEK-PNLIFKNLIAKPRKERGKKDGETQVGNDI---SNIEAVRFQLKTQFDKNVVT----HY- 940 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~-P~~i~Pn~vgr~~~~~~~~~~~~~vGdea---~~~~~~~~~l~~Pi~~G~V~----dw- 940 (1973)
.|.||-|+.++|+.|..+.. -+.+.|+.....-... +.|+.. +......|.+ .|...+.+. +|
T Consensus 2 ~i~iDdG~~~~K~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~y~v~g~~yt~-~~~~~~~~~t~~~~y~ 73 (318)
T PF06406_consen 2 KIAIDDGSTNVKLAWYEDGKIKTSISPNSFRSGWKVS-------FMGDSKSFNYEVDGEKYTV-DEVSSDALDTTHVDYQ 73 (318)
T ss_dssp EEEEEE-SSEEEEEEE-SS-EEEEEEE--EESS-----------S-SSS---EEESSSSEEEE-STTBTTTTSS-HGGGG
T ss_pred eEEEecCCCceeEEEecCCeEEEEecccccccccccc-------ccCCCceeEEEECCEEEEE-cCCCCccccccccccc
Confidence 38999999999999994432 1245566543322111 111110 1111111332 233333221 22
Q ss_pred -HHH-HHHHHHHHhhcCcCCCCCCCCcEEEEeCCC---Cc--HHHHHHH----HHHHH-------HhcCCCeEeechhhH
Q psy15183 941 -DIQ-EQIFDYAFSHLSINTEGNVNHPIVLTEPFL---NP--NYSRSLM----SELLF-------ECYQVPSVCYGIDSL 1002 (1973)
Q Consensus 941 -d~l-e~i~~~if~~L~i~~~~~~~~pVlltEp~~---~p--~~~Re~l----~ElLF-------E~~~vpav~~~~~sl 1002 (1973)
..+ .-...|++.+-|+.+. +..|+++.|.- .. ...++.+ ..++. ..+.+..|.+.++++
T Consensus 74 ~s~~n~~av~haL~~~G~~~~---~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~ 150 (318)
T PF06406_consen 74 YSDLNLVAVHHALLKAGLEPQ---DVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSV 150 (318)
T ss_dssp GSHHHHHHHHHHHHHHS--SS---EEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSH
T ss_pred cchhhHHHHHHHHHHcCCCCC---CeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccH
Confidence 223 3455778877788776 56677777721 11 1112222 11221 134477899999999
Q ss_pred HhhhhcCC---CCceEEEEeeCCCceEEEEeecCEEccCCcE-EeeccHHHHHHHHHHHHhh
Q psy15183 1003 FSYQYNGW---EGQSGVIISCGYQCTHVIPVINGCIDASKAK-RIDLGGFSVIHHLHKLLQL 1060 (1973)
Q Consensus 1003 lS~ya~G~---g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~-rl~vGG~~lt~~L~~lL~~ 1060 (1973)
.|+|..-. ...+-+|||||+.+|.++-|.++......+. ..++|-..+.+.+.+.|..
T Consensus 151 ~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 151 GAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp HHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred HHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 88887521 1257899999999999998887765544444 4578999999988888754
No 130
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins. This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T.
Probab=95.09 E-value=0.18 Score=55.43 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=54.0
Q ss_pred HHHHHHcCCCceeeecchhHhHHHHHHHhCCcccceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccCCCCC
Q psy15183 384 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 461 (1973)
Q Consensus 384 ~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RP 461 (1973)
.+.+++.+ ..+-|+||+.+|+.+|.. ....++||...++.+. ..+++|..|+++|++..+....+ .
T Consensus 68 ~~~~fl~~-~~vlVgHn~~fD~~fL~~----~~~~~iDT~~l~r~~~~~~~~~~L~~L~~~~~~~~i~~~~~----~--- 135 (150)
T cd06145 68 KLLSLISP-DTILVGHSLENDLKALKL----IHPRVIDTAILFPHPRGPPYKPSLKNLAKKYLGRDIQQGEG----G--- 135 (150)
T ss_pred HHHHHhCC-CCEEEEcChHHHHHHhhc----cCCCEEEcHHhccccCCCCCChhHHHHHHHHCCcceeCCCC----C---
Confidence 45566652 234599999999999942 2345899987766542 33589999999999865432101 1
Q ss_pred CCchhHhHHHHhHHHHHHHH
Q psy15183 462 LPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 462 Ls~eql~YAa~Da~~Ll~L~ 481 (1973)
+=|..||..+..||
T Consensus 136 ------H~Al~DA~~t~~l~ 149 (150)
T cd06145 136 ------HDSVEDARAALELV 149 (150)
T ss_pred ------CCcHHHHHHHHHHh
Confidence 22678888887776
No 131
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=95.05 E-value=0.34 Score=59.71 Aligned_cols=90 Identities=19% Similarity=0.167 Sum_probs=65.1
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCCcc--cccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCcccccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLF 1900 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l--~nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~s 1900 (1973)
..|..++.+ -+-|+||+.+|+.+|.+. +|+.. ...+||+..++.+. ..+++|+.|+++| |+.... .
T Consensus 86 ~~l~~~l~~--~~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~ldTl~lar~~~~~~~~~kL~~l~~~~-gi~~~~---~- 158 (313)
T PRK06063 86 GEVAELLRG--RTLVAHNVAFDYSFLAAEAERAGAELPVDQVMCTVELARRLGLGLPNLRLETLAAHW-GVPQQR---P- 158 (313)
T ss_pred HHHHHHcCC--CEEEEeCHHHHHHHHHHHHHHcCCCCCCCCEEehHHHHHHhccCCCCCCHHHHHHHc-CCCCCC---C-
Confidence 456666654 346999999999998754 45443 34789999888764 5678999999865 654321 1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1901 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1901 dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
+-|-.||.++..|+..+..++.+.
T Consensus 159 ------------H~Al~DA~ata~l~~~ll~~~~~~ 182 (313)
T PRK06063 159 ------------HDALDDARVLAGILRPSLERARER 182 (313)
T ss_pred ------------CCcHHHHHHHHHHHHHHHHHHHhc
Confidence 227789999999999998888765
No 132
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=94.95 E-value=0.047 Score=75.39 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHH--hCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHh
Q psy15183 539 KYALRELYKWRDRIARD--KDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 610 (1973)
Q Consensus 539 l~~l~~L~~WRd~~Ar~--~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~ 610 (1973)
-.++.+|-+||.++|++ ++.|+.-|++|..|.+||+.+|++..+|+.+.|....-+.+|+.+++++|+.-..
T Consensus 1029 ~~Lfe~Lr~lR~elA~e~~~~vppyvIFsD~TL~eIA~~~P~T~~eLl~I~GVG~~KlekYG~~fL~vI~~~~~ 1102 (1195)
T PLN03137 1029 AILYTALRKLRTALVKEAGDGVMAYHIFGNATLQQISKRIPRTKEELLEINGLGKAKVSKYGDRLLETIESTIN 1102 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCeEEECHHHHHHHHHHCCCCHHHHhcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999 6999999999999999999999999999999998899999999999999987643
No 133
>PRK07740 hypothetical protein; Provisional
Probab=94.93 E-value=0.56 Score=55.79 Aligned_cols=89 Identities=16% Similarity=0.127 Sum_probs=63.1
Q ss_pred HHHHHHcCCCceEeecchHHHHHHHHHh----cCCccc-ccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCccccccc
Q psy15183 1829 VLNEVLTDKNIVKVFHGADSDIKWLQKD----FGLYVV-GMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFD 1901 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg~K~Di~~Lqr~----~GI~l~-nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~sd 1901 (1973)
.|..++.+ -.-|+||+.+|..+|.+. ++.... .++||+..++.+. ...++|+.++.. +|++....
T Consensus 134 ~f~~fi~~--~~lVahna~fD~~fL~~~~~~~~~~~~~~~~iDt~~l~r~l~~~~~~~sL~~l~~~-~gi~~~~~----- 205 (244)
T PRK07740 134 RFYAFIGA--GVLVAHHAGHDKAFLRHALWRTYRQPFTHRLIDTMFLTKLLAHERDFPTLDDALAY-YGIPIPRR----- 205 (244)
T ss_pred HHHHHhCC--CEEEEeCHHHHHHHHHHHHHHhcCCCcCCCeechHHHHHHHcCCCCCCCHHHHHHH-CCcCCCCC-----
Confidence 44444543 356899999999988632 333333 5789999888765 336799999965 57654321
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1902 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1902 W~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
+-|..||..+..|+..+..++.+.
T Consensus 206 -----------H~Al~Da~ata~l~~~ll~~~~~~ 229 (244)
T PRK07740 206 -----------HHALGDALMTAKLWAILLVEAQQR 229 (244)
T ss_pred -----------CCcHHHHHHHHHHHHHHHHHHHHc
Confidence 127789999999999999998765
No 134
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=94.93 E-value=0.17 Score=56.82 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=54.5
Q ss_pred HHHHHcCCCceeeecchhHhHHHHHHHhCCc--ccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCC
Q psy15183 385 LNEVLTDKNIVKVFHGADSDIKWLQKDFGLY--VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 462 (1973)
Q Consensus 385 L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~--~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPL 462 (1973)
|..++ +++.+-|||+..+|+.+| ++. -..+.||.+....-+..+.||..|+++|||..+....
T Consensus 95 l~~li-~~~tILVGHsL~nDL~aL----~l~hp~~~viDTa~l~~~~~~r~~sLk~La~~~L~~~IQ~~~---------- 159 (174)
T cd06143 95 LRLLV-DLGCIFVGHGLAKDFRVI----NIQVPKEQVIDTVELFHLPGQRKLSLRFLAWYLLGEKIQSET---------- 159 (174)
T ss_pred HHHHc-CCCCEEEeccchhHHHHh----cCcCCCcceEEcHHhccCCCCCChhHHHHHHHHcCCcccCCC----------
Confidence 44444 455567999999999999 343 2478999754333233357999999999998875421
Q ss_pred CchhHhHHHHhHHHHHHHH
Q psy15183 463 PEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 463 s~eql~YAa~Da~~Ll~L~ 481 (1973)
+=..+||.+.+.||
T Consensus 160 -----HdSvEDArAam~Ly 173 (174)
T cd06143 160 -----HDSIEDARTALKLY 173 (174)
T ss_pred -----cCcHHHHHHHHHHh
Confidence 11468999999887
No 135
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=94.92 E-value=0.17 Score=71.62 Aligned_cols=133 Identities=22% Similarity=0.289 Sum_probs=89.6
Q ss_pred hcCceeEEEeeeccCCccCCceeEEEEE---eCCceE------EEEcCC-c---------------------hhhHHHHH
Q psy15183 1783 KQQQEIAIDLEYHNYRSYQGYTCLMQIS---TRDKDY------IVDTLK-L---------------------REDLEVLN 1831 (1973)
Q Consensus 1783 ~~a~~IavDlE~~~~~s~~g~v~LlQIS---t~~~~~------iiD~l~-l---------------------~~~l~~L~ 1831 (1973)
.....+.||+|++++.+.... +++|+ ..++.. ++.+-. + ...+..+.
T Consensus 188 ~~~~~VVfDiETTGL~~~~d~--IIEIGAVkv~~g~iid~f~~~V~P~~~I~~~~~~ltGIT~e~L~~ap~~~evl~~f~ 265 (1213)
T TIGR01405 188 DDATYVVFDIETTGLSPQYDE--IIEFGAVKVKNGRIIDKFQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKFK 265 (1213)
T ss_pred cCCcEEEEEeEecCCCCCCCe--EEEEEEEEEECCeEEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHH
Confidence 567899999999988765444 34444 122211 222210 0 11234566
Q ss_pred HHHcCCCceEeecchHHHHHHHHHh---cCCcc--cccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCcccccccCCC
Q psy15183 1832 EVLTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRH 1904 (1973)
Q Consensus 1832 ~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l--~nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~sdW~~ 1904 (1973)
.++.+ -+-|+||+.+|+.+|.+. +|+.. ...+||+..++.+. ..+++|+.|+++| |+....
T Consensus 266 ~fl~~--~iLVaHNa~FD~~fL~~~~~r~g~~~~~~~~IDTl~lar~l~p~~k~~kL~~Lak~l-gi~~~~--------- 333 (1213)
T TIGR01405 266 EFFKD--SILVAHNASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGNICKKL-GVDLDD--------- 333 (1213)
T ss_pred HHhCC--CeEEEEChHHHHHHHHHHHHHcCCCccCCCEeEHHHHHHHHhccCCCCCHHHHHHHc-CCCCCC---------
Confidence 66754 345999999999988643 45542 35789999888775 5678999999885 765432
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1905 RPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1905 RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
.+.|..||.++..|+..|..++.+.
T Consensus 334 -------~HrAl~DA~aTa~I~~~ll~~l~~~ 358 (1213)
T TIGR01405 334 -------HHRADYDAEATAKVFKVMVEQLKEK 358 (1213)
T ss_pred -------CcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1348889999999999999988765
No 136
>KOG2249|consensus
Probab=94.80 E-value=0.2 Score=58.74 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=85.2
Q ss_pred ceeEEEeeeccCCcc--CCceeEEEEEeCCceEEEEcCCc---------------hh-h------H----HHHHHHHcCC
Q psy15183 1786 QEIAIDLEYHNYRSY--QGYTCLMQISTRDKDYIVDTLKL---------------RE-D------L----EVLNEVLTDK 1837 (1973)
Q Consensus 1786 ~~IavDlE~~~~~s~--~g~v~LlQISt~~~~~iiD~l~l---------------~~-~------l----~~L~~lLedp 1837 (1973)
..||+|||-.+..+- ...++-+.|-..-+.++||..-- +. . + ....++|.+
T Consensus 106 r~vAmDCEMVG~Gp~G~~s~lARvSIVN~~G~VvyDkyVkP~~~VtDyRT~vSGIrpehm~~A~pf~~aQ~ev~klL~g- 184 (280)
T KOG2249|consen 106 RVVAMDCEMVGVGPDGRESLLARVSIVNYHGHVVYDKYVKPTEPVTDYRTRVSGIRPEHMRDAMPFKVAQKEVLKLLKG- 184 (280)
T ss_pred eEEEEeeeEeccCCCccceeeeEEEEeeccCcEeeeeecCCCcccccceeeecccCHHHhccCccHHHHHHHHHHHHhC-
Confidence 689999998775532 22334455556667778775321 00 0 1 234456654
Q ss_pred CceEeecchHHHHHHHHHhcCCcccc-cchHHHHHH---HCC-CCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHH
Q psy15183 1838 NIVKVFHGADSDIKWLQKDFGLYVVG-MFDTHQACK---FLP-MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAI 1912 (1973)
Q Consensus 1838 ~I~KV~Hg~K~Di~~Lqr~~GI~l~n-lfDT~lAay---LL~-~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi 1912 (1973)
-+-|||++..|+..|+-.+ +.. +-||...-- ++. ....||..|.+.+||.++.-..+.
T Consensus 185 -RIlVGHaLhnDl~~L~l~h---p~s~iRDTs~~~pl~k~~~~~~tpSLK~Lt~~~Lg~~IQ~GeHs------------- 247 (280)
T KOG2249|consen 185 -RILVGHALHNDLQALKLEH---PRSMIRDTSKYPPLMKLLSKKATPSLKKLTEALLGKDIQVGEHS------------- 247 (280)
T ss_pred -CEEeccccccHHHHHhhhC---chhhhcccccCchHHHHhhccCCccHHHHHHHHhchhhhccccC-------------
Confidence 3459999999999998322 222 457765422 222 345699999999999887544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1913 QYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1913 ~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
..+||.++..||...+-+-++.
T Consensus 248 --SvEDA~AtM~LY~~vk~qwe~~ 269 (280)
T KOG2249|consen 248 --SVEDARATMELYKRVKVQWEKI 269 (280)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999998776654
No 137
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=94.75 E-value=0.24 Score=70.34 Aligned_cols=135 Identities=21% Similarity=0.304 Sum_probs=93.7
Q ss_pred hcCCeEEEEeeeccCCccCCcEEEEEEEe---CCc------eEEEEccC-c---------------------cccHHHHH
Q psy15183 338 KQQQEIAIDLEYHNYRSYQGYTCLMQIST---RDK------DYIVDTLK-L---------------------REDLEVLN 386 (1973)
Q Consensus 338 ~~~~~IavDtE~~~~~s~~g~l~LIQIst---~~~------~~lID~l~-l---------------------~~~l~~L~ 386 (1973)
.....+.+|+|+++..+.... +++|+. .++ ..+|.|-. + ...+..|.
T Consensus 188 ~~~~~VVfDiETTGL~~~~d~--IIEIGAVkv~~g~iid~f~~~V~P~~~I~~~~~~ltGIT~e~L~~ap~~~evl~~f~ 265 (1213)
T TIGR01405 188 DDATYVVFDIETTGLSPQYDE--IIEFGAVKVKNGRIIDKFQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKFK 265 (1213)
T ss_pred cCCcEEEEEeEecCCCCCCCe--EEEEEEEEEECCeEEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHH
Confidence 567899999999988765544 344442 121 12333321 0 01234566
Q ss_pred HHHcCCCceeeecchhHhHHHHHHH---hCCc--ccceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccCCC
Q psy15183 387 EVLTDKNIVKVFHGADSDIKWLQKD---FGLY--VVGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRH 459 (1973)
Q Consensus 387 ~lL~dp~I~KV~H~ak~Dl~~L~r~---~Gi~--~~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~ 459 (1973)
+++.+. +-|+||+.+|+.+|.+. +|+. ....+||+..++.+. ...++|+.|++++ |+....
T Consensus 266 ~fl~~~--iLVaHNa~FD~~fL~~~~~r~g~~~~~~~~IDTl~lar~l~p~~k~~kL~~Lak~l-gi~~~~--------- 333 (1213)
T TIGR01405 266 EFFKDS--ILVAHNASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGNICKKL-GVDLDD--------- 333 (1213)
T ss_pred HHhCCC--eEEEEChHHHHHHHHHHHHHcCCCccCCCEeEHHHHHHHHhccCCCCCHHHHHHHc-CCCCCC---------
Confidence 677653 45899999999998644 4554 256789998888774 5678999999875 765432
Q ss_pred CCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 460 RPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 460 RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
.+-|..||..+..|+..|..++.+.|.
T Consensus 334 -------~HrAl~DA~aTa~I~~~ll~~l~~~~i 360 (1213)
T TIGR01405 334 -------HHRADYDAEATAKVFKVMVEQLKEKGI 360 (1213)
T ss_pred -------CcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 245899999999999999999998874
No 138
>PRK07883 hypothetical protein; Validated
Probab=94.73 E-value=0.22 Score=65.90 Aligned_cols=136 Identities=19% Similarity=0.182 Sum_probs=89.0
Q ss_pred HHhcCCeEEEEeeeccCCccCCcEEEEEEEe----CCc-----eEEEEccC-c----------c-----------ccHHH
Q psy15183 336 ELKQQQEIAIDLEYHNYRSYQGYTCLMQIST----RDK-----DYIVDTLK-L----------R-----------EDLEV 384 (1973)
Q Consensus 336 ~L~~~~~IavDtE~~~~~s~~g~l~LIQIst----~~~-----~~lID~l~-l----------~-----------~~l~~ 384 (1973)
.+.+...+.||+|+++.++.... +++|+. .+. ..+|.|-. + . ..+..
T Consensus 11 ~~~~~~~Vv~D~ETTGl~p~~~~--IIEIgaV~v~~g~iv~~f~~lV~P~~~i~~~~~~itGIt~e~l~~ap~~~evl~~ 88 (557)
T PRK07883 11 PLRDVTFVVVDLETTGGSPAGDA--ITEIGAVKVRGGEVLGEFATLVNPGRPIPPFITVLTGITTAMVAGAPPIEEVLPA 88 (557)
T ss_pred CCcCCCEEEEEEecCCCCCCCCe--EEEEEEEEEECCEEEEEEEEEECCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHH
Confidence 44556789999999988765443 344442 111 23444421 1 0 11234
Q ss_pred HHHHHcCCCceeeecchhHhHHHHHHH---hCCcc--cceeehhhhhhh-c---CCCCccHHHHHHHHcCCCCCcccccc
Q psy15183 385 LNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKF-L---PMPRQSLAYLLKHYCDVDSDKTFQLF 455 (1973)
Q Consensus 385 L~~lL~dp~I~KV~H~ak~Dl~~L~r~---~Gi~~--~nlFDT~lAA~l-L---g~~~~sLa~Lv~~ylgv~ldK~~q~s 455 (1973)
|.+++.+ -+-|+||+.+|+.+|.+. +|+.. ...+||+..++- + +...++|+.|++ ++|+....
T Consensus 89 f~~fl~~--~~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~iDTl~lar~l~~~~~~~~~~L~~L~~-~~gi~~~~----- 160 (557)
T PRK07883 89 FLEFARG--AVLVAHNAPFDIGFLRAAAARCGYPWPGPPVLCTVRLARRVLPRDEAPNVRLSTLAR-LFGATTTP----- 160 (557)
T ss_pred HHHHhcC--CEEEEeCcHHHHHHHHHHHHHcCCCCCCCCcEecHHHHHHhcccCCCCCCCHHHHHH-HCCcccCC-----
Confidence 5566665 345899999999998754 45553 357899876643 3 345689999987 56765422
Q ss_pred cCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 456 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 456 DW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
.+-|..||.++..|+..+..++.+.|
T Consensus 161 -----------~H~Al~DA~ata~l~~~l~~~~~~~~ 186 (557)
T PRK07883 161 -----------THRALDDARATVDVLHGLIERLGNLG 186 (557)
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 24488999999999999999998666
No 139
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family. All proteins in this family for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the n-terminal region of DinG from some low GC gram positive bacteria. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.57 E-value=0.23 Score=57.90 Aligned_cols=135 Identities=20% Similarity=0.267 Sum_probs=82.9
Q ss_pred HhcCCeEEEEeeeccCCccCCcEEEEEEEe----CCc------eEEEEccC-cc---------------------ccHHH
Q psy15183 337 LKQQQEIAIDLEYHNYRSYQGYTCLMQIST----RDK------DYIVDTLK-LR---------------------EDLEV 384 (1973)
Q Consensus 337 L~~~~~IavDtE~~~~~s~~g~l~LIQIst----~~~------~~lID~l~-l~---------------------~~l~~ 384 (1973)
|.....+++|+|+.+..+... +|+|+. .+. ..+|.|-. +. +.+..
T Consensus 4 l~~~~fvv~D~ETTGl~~~~~---IIeIgav~v~~~~~~~~~f~~li~P~~~i~~~a~~ihGIt~e~l~~~p~~~ev~~~ 80 (217)
T TIGR00573 4 LVLDTETTGDNETTGLYAGHD---IIEIGAVEIINRRITGNKFHTYIKPDRPIDPDAIKIHGITDDMLKDKPDFKEIAED 80 (217)
T ss_pred EEecCEEEEEecCCCCCCCCC---EEEEEEEEEECCCEeeeEEEEEECcCCCCCHHHHhhcCCCHHHHcCCCCHHHHHHH
Confidence 345678999999999876444 445442 111 13444421 00 11235
Q ss_pred HHHHHcCCCceeeecchhHhHHHHHHHhC---Cc---ccceeehhhhhhhc----CCCCccHHHHHHHHcCCCCCccccc
Q psy15183 385 LNEVLTDKNIVKVFHGADSDIKWLQKDFG---LY---VVGMFDTHQACKFL----PMPRQSLAYLLKHYCDVDSDKTFQL 454 (1973)
Q Consensus 385 L~~lL~dp~I~KV~H~ak~Dl~~L~r~~G---i~---~~nlFDT~lAA~lL----g~~~~sLa~Lv~~ylgv~ldK~~q~ 454 (1973)
|..++.+. .-|+||+.+|+.+|.+.+. .. ...++||+..++.+ ...+++|..|+++| |+....
T Consensus 81 ~~~~~~~~--~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~dtl~l~~~~~~~~~~~~~~L~~l~~~~-gl~~~~---- 153 (217)
T TIGR00573 81 FADYIRGA--ELVIHNASFDVGFLNYEFSKLYKVEPKTNDVIDTTDTLQYARPEFPGKRNTLDALCKRY-EITNSH---- 153 (217)
T ss_pred HHHHhCCC--EEEEeccHHHHHHHHHHHHHhcCCCCCccceecHHHHHHHHHHhCCCCCCCHHHHHHHc-CCCCCC----
Confidence 55666553 3589999999999976653 11 23567887655443 22357899998876 643210
Q ss_pred ccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHh
Q psy15183 455 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 491 (1973)
Q Consensus 455 sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~ 491 (1973)
...+=|..||.++..|+..+..+....
T Consensus 154 ----------~~~H~Al~DA~~ta~l~~~l~~~~~~~ 180 (217)
T TIGR00573 154 ----------RALHGALADAFILAKLYLVMTGKQTKY 180 (217)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHhcchhh
Confidence 012338899999999999997766543
No 140
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=94.53 E-value=0.15 Score=64.64 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=104.9
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHHHHHH
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFDY 949 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i~~~ 949 (1973)
.|=||+||.|+..=|+ +..+-|..+-..-+. --+++-+..... --+..|+.....-|-+.+..|.+.
T Consensus 5 SVGIDIGTSTTQlvfS-----rl~l~n~a~~~~vPr-----i~I~dkeViYrS---~I~fTPl~~~~~ID~~al~~iv~~ 71 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFS-----RLTLENRASGFSVPR-----IEIVDKEVIYRS---PIYFTPLLSQTEIDAEALKEIVEE 71 (473)
T ss_pred EEEEeecCCceeEEEE-----EeEEEeccCCCccce-----EEEeccEEEecC---CccccCCCCCCccCHHHHHHHHHH
Confidence 5679999999998777 222222111110000 002222221111 124578888778899999999999
Q ss_pred HHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcC---CCeEeechhhHHhhhhcCCC------CceEEEEee
Q psy15183 950 AFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQ---VPSVCYGIDSLFSYQYNGWE------GQSGVIISC 1020 (1973)
Q Consensus 950 if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~---vpav~~~~~sllS~ya~G~g------~~tgLVVDi 1020 (1973)
-|.+-|+.|++-.--.||||--..- +.+-+.+.+.|=+..| |..--=--++++|..|+|.- ..+-+=|||
T Consensus 72 eY~~Agi~p~~I~TGAVIITGETAr-KeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDI 150 (473)
T PF06277_consen 72 EYRKAGITPEDIDTGAVIITGETAR-KENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDI 150 (473)
T ss_pred HHHHcCCCHHHCccccEEEecchhh-hhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEe
Confidence 9999999887655566777765443 3444445555544333 11111124578888888761 456666899
Q ss_pred CCCceEEEEeecCEEccCCcEEeeccHHHH
Q psy15183 1021 GYQCTHVIPVINGCIDASKAKRIDLGGFSV 1050 (1973)
Q Consensus 1021 G~s~T~V~PV~dG~vl~~si~rl~vGG~~l 1050 (1973)
|.++|.++-+-+|.++.. --+++||+.+
T Consensus 151 GGGTtN~avf~~G~v~~T--~cl~IGGRLi 178 (473)
T PF06277_consen 151 GGGTTNIAVFDNGEVIDT--ACLDIGGRLI 178 (473)
T ss_pred CCCceeEEEEECCEEEEE--EEEeeccEEE
Confidence 999999999999999954 4678999954
No 141
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=94.46 E-value=0.27 Score=60.91 Aligned_cols=136 Identities=13% Similarity=0.214 Sum_probs=83.7
Q ss_pred HhcCCeEEEEeeeccCCccCCcEEEEEEEe---C-Cc------eEEEEccC------c--------------cccHHHHH
Q psy15183 337 LKQQQEIAIDLEYHNYRSYQGYTCLMQIST---R-DK------DYIVDTLK------L--------------REDLEVLN 386 (1973)
Q Consensus 337 L~~~~~IavDtE~~~~~s~~g~l~LIQIst---~-~~------~~lID~l~------l--------------~~~l~~L~ 386 (1973)
+.....++||+|+.++++... ++|+|+. . ++ ..+|.|-. + .+.+..|.
T Consensus 43 ~~~~~fVvlDiETTGLdp~~d--rIIeIgAV~i~~~g~ive~f~tLVnP~~~~~p~~LHGIT~e~La~AP~f~eVl~el~ 120 (377)
T PRK05601 43 IEAAPFVAVSIQTSGIHPSTS--RLITIDAVTLTADGEEVEHFHAVLNPGEDPGPFHLHGLSAEEFAQGKRFSQILKPLD 120 (377)
T ss_pred CCCCCEEEEEEECCCCCCCCC--eEEEEEEEEEEcCCEEEEEEEEEECcCCCCCCccccCCCHHHHhcCCCHHHHHHHHH
Confidence 344678999999999887654 4454431 1 11 23454421 1 01234566
Q ss_pred HHHcCCCceeeecchhHhHHHHHHHh-------------------------------CCcc-cceeehhhhhhhcC--CC
Q psy15183 387 EVLTDKNIVKVFHGADSDIKWLQKDF-------------------------------GLYV-VGMFDTHQACKFLP--MP 432 (1973)
Q Consensus 387 ~lL~dp~I~KV~H~ak~Dl~~L~r~~-------------------------------Gi~~-~nlFDT~lAA~lLg--~~ 432 (1973)
+++.+. +-|+||+.+|+..|.+.+ ++.. ..++||+-.++.+. ..
T Consensus 121 ~fL~g~--vLVaHNA~FD~~FL~~e~~r~~~~a~~~n~~~~r~~~~~~~~~rr~~~g~~p~p~~~iDTL~LARrl~p~l~ 198 (377)
T PRK05601 121 RLIDGR--TLILHNAPRTWGFIVSEAKRAMNAAARANRNRNRGNRRGGRGRRRQRVGHIPKPVVIVDTLATARRQGVALD 198 (377)
T ss_pred HHhCCC--EEEEECcHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccccCCCCCCCCEEEhHHHHHHHcCCCC
Confidence 777754 358999999999886643 1122 35799988888775 56
Q ss_pred CccHHHHHHHHcCCCCCcc---cccccCCCCCCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 433 RQSLAYLLKHYCDVDSDKT---FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 433 ~~sLa~Lv~~ylgv~ldK~---~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
++.|..|+.+| |+..+.. .++++- +.. ..+.+|+..|..||..+
T Consensus 199 ~~rL~~La~~l-Gi~~p~~~A~~~Ra~~-----p~~--~l~~~Da~ll~~l~~~~ 245 (377)
T PRK05601 199 DIRIRGVAHTL-GLDAPAAEASVERAQV-----PHR--QLCREETLLVARLYFAL 245 (377)
T ss_pred CCCHHHHHHHh-CCCCCchhhhhhhhcC-----Chh--hhhhHHHHHHHHHHHHh
Confidence 79999999974 6654321 111111 111 22457999998888765
No 142
>KOG2249|consensus
Probab=94.42 E-value=0.3 Score=57.28 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=89.2
Q ss_pred CeEEEEeeeccCCcc--CCcEEEEEEEeCCceEEEEccCcc----------------cc------H----HHHHHHHcCC
Q psy15183 341 QEIAIDLEYHNYRSY--QGYTCLMQISTRDKDYIVDTLKLR----------------ED------L----EVLNEVLTDK 392 (1973)
Q Consensus 341 ~~IavDtE~~~~~s~--~g~l~LIQIst~~~~~lID~l~l~----------------~~------l----~~L~~lL~dp 392 (1973)
..||+|+|..+..+- ...++-+.|-..-+..++|.+--+ .. + ....++|.+
T Consensus 106 r~vAmDCEMVG~Gp~G~~s~lARvSIVN~~G~VvyDkyVkP~~~VtDyRT~vSGIrpehm~~A~pf~~aQ~ev~klL~g- 184 (280)
T KOG2249|consen 106 RVVAMDCEMVGVGPDGRESLLARVSIVNYHGHVVYDKYVKPTEPVTDYRTRVSGIRPEHMRDAMPFKVAQKEVLKLLKG- 184 (280)
T ss_pred eEEEEeeeEeccCCCccceeeeEEEEeeccCcEeeeeecCCCcccccceeeecccCHHHhccCccHHHHHHHHHHHHhC-
Confidence 589999999876542 344555666666777788864321 00 1 134557765
Q ss_pred CceeeecchhHhHHHHHHHhCCcccceeehhhhhhhcC----CCCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHh
Q psy15183 393 NIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP----MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQ 468 (1973)
Q Consensus 393 ~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg----~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~ 468 (1973)
.| -|||+..+|+.+|+-.+- -.-+-||.-.--|.. ....||..|.+.+||.++.-++..
T Consensus 185 RI-lVGHaLhnDl~~L~l~hp--~s~iRDTs~~~pl~k~~~~~~tpSLK~Lt~~~Lg~~IQ~GeHs-------------- 247 (280)
T KOG2249|consen 185 RI-LVGHALHNDLQALKLEHP--RSMIRDTSKYPPLMKLLSKKATPSLKKLTEALLGKDIQVGEHS-------------- 247 (280)
T ss_pred CE-EeccccccHHHHHhhhCc--hhhhcccccCchHHHHhhccCCccHHHHHHHHhchhhhccccC--------------
Confidence 34 499999999999954431 123458865443332 335799999999999888655532
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Q psy15183 469 YARTDTHYLLYVYDCMKLDLSAA 491 (1973)
Q Consensus 469 YAa~Da~~Ll~L~d~L~~~L~e~ 491 (1973)
..+||.....||...+.+-++.
T Consensus 248 -SvEDA~AtM~LY~~vk~qwe~~ 269 (280)
T KOG2249|consen 248 -SVEDARATMELYKRVKVQWEKI 269 (280)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999997776654
No 143
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins. This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon
Probab=94.38 E-value=0.36 Score=53.56 Aligned_cols=85 Identities=22% Similarity=0.271 Sum_probs=57.5
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHHh---CCc-----ccceeehhhhhhhcC-CCCccHHHHHHHHcCCCCCcccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDF---GLY-----VVGMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTFQ 453 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~---Gi~-----~~nlFDT~lAA~lLg-~~~~sLa~Lv~~ylgv~ldK~~q 453 (1973)
..|.+++.+. + -|+||+.+|+.+|.+.+ |+. ...++||+..++.+. ...++|+.++++| |+..+.
T Consensus 73 ~~l~~~l~~~-~-lv~hn~~fD~~~l~~~~~~~~~~~~~~~~~~~idt~~~~~~~~~~~~~~L~~l~~~~-~i~~~~--- 146 (167)
T cd06131 73 DEFLDFIRGA-E-LVIHNASFDVGFLNAELSLLGLGKKIIDFCRVIDTLALARKKFPGKPNSLDALCKRF-GIDNSH--- 146 (167)
T ss_pred HHHHHHHCCC-e-EEEeChHHhHHHHHHHHHHhCCCcccccCCCceEhHHHHHHHcCCCCCCHHHHHHHC-CCCCCC---
Confidence 4566666653 3 48999999999986543 332 245789987665553 3457999999886 543321
Q ss_pred cccCCCCCCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 454 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 454 ~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
...+-|..||..+..|+..|
T Consensus 147 -----------~~~H~Al~Da~~~a~l~~~l 166 (167)
T cd06131 147 -----------RTLHGALLDAELLAEVYLEL 166 (167)
T ss_pred -----------CCCCChHHHHHHHHHHHHHh
Confidence 12345889999999888665
No 144
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial. This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria.
Probab=94.33 E-value=0.36 Score=56.69 Aligned_cols=127 Identities=24% Similarity=0.331 Sum_probs=79.1
Q ss_pred eEEEEeeeccCCccCCcEEEEEEEe---C------C-ceEEEEccC-cc---------------------ccHHHHHHHH
Q psy15183 342 EIAIDLEYHNYRSYQGYTCLMQIST---R------D-KDYIVDTLK-LR---------------------EDLEVLNEVL 389 (1973)
Q Consensus 342 ~IavDtE~~~~~s~~g~l~LIQIst---~------~-~~~lID~l~-l~---------------------~~l~~L~~lL 389 (1973)
.+.+|+|+.+.++..+ -.+|+|+. . + -..+|.|-. +. +.+..|.+++
T Consensus 2 ~vvlD~ETTGl~p~~~-d~IIEIgav~~~~~~~~~~~f~~~i~P~~~i~~~a~~vhGIt~e~l~~~p~f~ev~~~f~~fi 80 (225)
T TIGR01406 2 QIILDTETTGLDPKGG-HRIVEIGAVELVNRMLTGDNFHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIADEFLDFI 80 (225)
T ss_pred EEEEEeeCCCcCCCCC-CeEEEEEEEEEECCcEecceEEEEECcCCCCCHHHHhccCCCHHHHhCCCCHHHHHHHHHHHh
Confidence 5889999999876543 12344431 1 1 134555521 10 1123555666
Q ss_pred cCCCceeeecchhHhHHHHHHH---hCC--c-c---cceeehhhhhhhc-CCCCccHHHHHHHHcCCCCCcccccccCCC
Q psy15183 390 TDKNIVKVFHGADSDIKWLQKD---FGL--Y-V---VGMFDTHQACKFL-PMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 459 (1973)
Q Consensus 390 ~dp~I~KV~H~ak~Dl~~L~r~---~Gi--~-~---~nlFDT~lAA~lL-g~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~ 459 (1973)
.+.. -|+||+.+|+.+|.+. +|. . + ..++||+..++.+ ...+++|..|+++| |+....
T Consensus 81 ~~~~--lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~L~~~~-gi~~~~--------- 148 (225)
T TIGR01406 81 GGSE--LVIHNAAFDVGFLNYELERLGPTIKKIGEFCRVIDTLAMARERFPGQRNSLDALCKRF-KVDNSH--------- 148 (225)
T ss_pred CCCE--EEEEecHHHHHHHHHHHHHhCCCCcccccCCCEEEHHHHHHHHcCCCCCCHHHHHHhc-CCCCCC---------
Confidence 6543 4899999999998754 452 2 1 4688998877654 33458999999986 543221
Q ss_pred CCCCchhHhHHHHhHHHHHHHHHHHHH
Q psy15183 460 RPLPEPAIQYARTDTHYLLYVYDCMKL 486 (1973)
Q Consensus 460 RPLs~eql~YAa~Da~~Ll~L~d~L~~ 486 (1973)
| ..+=|..||..+..||..|..
T Consensus 149 r-----~~H~Al~DA~~~a~v~~~l~~ 170 (225)
T TIGR01406 149 R-----TLHGALLDAHLLAEVYLALTG 170 (225)
T ss_pred C-----CCcCHHHHHHHHHHHHHHHHc
Confidence 1 123388999999999988754
No 145
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative
Probab=94.27 E-value=0.45 Score=54.43 Aligned_cols=99 Identities=21% Similarity=0.241 Sum_probs=64.0
Q ss_pred HHHHHHHHc--CCCceEeecch-HHHHHHHHH---hcCCccc------------------------ccchHHHHHHHC-C
Q psy15183 1827 LEVLNEVLT--DKNIVKVFHGA-DSDIKWLQK---DFGLYVV------------------------GMFDTHQACKFL-P 1875 (1973)
Q Consensus 1827 l~~L~~lLe--dp~I~KV~Hg~-K~Di~~Lqr---~~GI~l~------------------------nlfDT~lAayLL-~ 1875 (1973)
+..+..++. ||.+ -||||. .+|+..|.. .+|+... .++|++..++-. .
T Consensus 67 L~~f~~~i~~~dpdi-ivg~N~~~FD~~~L~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~gr~~~D~~~~~r~~~~ 145 (199)
T cd05160 67 LKRFFDIIREYDPDI-LTGYNIDDFDLPYLLKRAEALGIKLTDGIYRRSGGEKSSGSTERIAVKGRVVFDLLAAYKRDFK 145 (199)
T ss_pred HHHHHHHHHhcCCCE-EEEeccCCCcHHHHHHHHHHhCCCcccccccccCCCccCCcccceeeeccEeeehHHHHHHhcC
Confidence 344445554 3655 599999 789987742 3555541 257988876644 4
Q ss_pred CCCCcHHHHHHHHcCCCCCc--ccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15183 1876 MPRQSLAYLLKHYCDVDSDK--TFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 1926 (1973)
Q Consensus 1876 ~~~~sLa~La~~yLg~~l~K--~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Ly 1926 (1973)
.++++|+.+++++++..... .....+|....-....++|...||..++.|+
T Consensus 146 l~sy~L~~v~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~~Y~~~D~~~~~~l~ 198 (199)
T cd05160 146 LKSYTLDAVAEELLGEGKEKVDGEIIEDAEWEEDPERLIEYNLKDAELTLQIL 198 (199)
T ss_pred cccCCHHHHHHHHhCCCCCcCCHHHHhhccCcchHHHHHHHHHHHHHHHHHhh
Confidence 67789999999999854321 1122232111224567799999999999886
No 146
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins. This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon
Probab=94.14 E-value=0.55 Score=52.10 Aligned_cols=85 Identities=22% Similarity=0.263 Sum_probs=56.6
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCCc-----ccccchHHHHHHHCC-CCCCcHHHHHHHHcCCCCCcccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLY-----VVGMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTFQ 1898 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~-----l~nlfDT~lAayLL~-~~~~sLa~La~~yLg~~l~K~~q 1898 (1973)
..|.+++.+ .+ -|+||+.+|..+|.+. +|+. ...++||+..++.+. ...++|+.++++| |+......
T Consensus 73 ~~l~~~l~~-~~-lv~hn~~fD~~~l~~~~~~~~~~~~~~~~~~~idt~~~~~~~~~~~~~~L~~l~~~~-~i~~~~~~- 148 (167)
T cd06131 73 DEFLDFIRG-AE-LVIHNASFDVGFLNAELSLLGLGKKIIDFCRVIDTLALARKKFPGKPNSLDALCKRF-GIDNSHRT- 148 (167)
T ss_pred HHHHHHHCC-Ce-EEEeChHHhHHHHHHHHHHhCCCcccccCCCceEhHHHHHHHcCCCCCCHHHHHHHC-CCCCCCCC-
Confidence 456666655 33 4899999999988643 2332 124789997776654 3466999999987 54432111
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1899 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 1929 (1973)
Q Consensus 1899 ~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L 1929 (1973)
.+-|..||.++..|+..|
T Consensus 149 -------------~H~Al~Da~~~a~l~~~l 166 (167)
T cd06131 149 -------------LHGALLDAELLAEVYLEL 166 (167)
T ss_pred -------------CCChHHHHHHHHHHHHHh
Confidence 123788999998888665
No 147
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=94.11 E-value=0.28 Score=66.96 Aligned_cols=140 Identities=23% Similarity=0.315 Sum_probs=96.6
Q ss_pred HHhcCceeEEEeeeccCCccCCceeEEEEEeC---Cc------eEEEEcCC-c---------------------hhhHHH
Q psy15183 1781 ELKQQQEIAIDLEYHNYRSYQGYTCLMQISTR---DK------DYIVDTLK-L---------------------REDLEV 1829 (1973)
Q Consensus 1781 ~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~---~~------~~iiD~l~-l---------------------~~~l~~ 1829 (1973)
.|..+..+.||+|++++.+.... ++||+.. .+ .+++.+-. + ...+..
T Consensus 417 ~l~datyVVfDiETTGLs~~~d~--iIE~aAvKikng~iId~f~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~vL~k 494 (1444)
T COG2176 417 KLDDATYVVFDIETTGLSPVYDE--IIEIAAVKIKNGRIIDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEK 494 (1444)
T ss_pred ccccccEEEEEeecCCcCcccch--hhhheeeeeeCCcchHHHHHhcCCCCcCchhhhhccccCHHHHcCCccHHHHHHH
Confidence 35567889999999998876544 4555521 11 12222211 1 112456
Q ss_pred HHHHHcCCCceEeecchHHHHHHHHHh---cCCcc--cccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCcccccccC
Q psy15183 1830 LNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDW 1902 (1973)
Q Consensus 1830 L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l--~nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~sdW 1902 (1973)
+++++.| -+-|.||+.+|+-+|... +|+.. .++.||.-.|+.|+ +.+|+|..|+++| ++.+
T Consensus 495 f~~~~~d--~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~-~v~l--------- 562 (1444)
T COG2176 495 FREFIGD--SILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKL-GVEL--------- 562 (1444)
T ss_pred HHHHhcC--cEEEeccCccchhHHHHHHHHhCCccccCchhhHHHHHHHhChhhhhcchHHHHHHh-CccH---------
Confidence 6778866 346999999999888644 45553 35899999999998 6789999999987 3332
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Q psy15183 1903 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNL 1943 (1973)
Q Consensus 1903 ~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~~~g~~~L 1943 (1973)
+..+-|--||.++-+++-.+.++|.+. |..++
T Consensus 563 -------e~hHRA~yDaeat~~vf~~f~~~~ke~--Gi~~l 594 (1444)
T COG2176 563 -------ERHHRADYDAEATAKVFFVFLKDLKEK--GITNL 594 (1444)
T ss_pred -------HHhhhhhhhHHHHHHHHHHHHHHHHHh--chhhH
Confidence 333446679999999999999999987 54443
No 148
>PRK05168 ribonuclease T; Provisional
Probab=93.96 E-value=0.75 Score=53.55 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCeEEEEeeeccCCccCCcE---EEEEEEeC--C-----c--eEEEEcc---Ccc-----------cc--
Q psy15183 330 VTQLVSELKQQQEIAIDLEYHNYRSYQGYT---CLMQISTR--D-----K--DYIVDTL---KLR-----------ED-- 381 (1973)
Q Consensus 330 L~~ll~~L~~~~~IavDtE~~~~~s~~g~l---~LIQIst~--~-----~--~~lID~l---~l~-----------~~-- 381 (1973)
+..+-..+.....+++|+|+++..+....+ +.+.+... + . ..+|.|. .+. +.
T Consensus 7 ~~~~~~~~~~~~~vv~D~ETTGl~~~~d~IieIgaV~v~~d~~g~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~e~~~ 86 (211)
T PRK05168 7 LNPLKDRFRGFLPVVIDVETAGFNAKTDALLEIAAVTLKMDEQGWLYPDETLHFHVEPFEGANLEPEALAFNGIDPDNPL 86 (211)
T ss_pred cchHHHHhcCCceEEEEeeCCCCCCCCCEEEEEeEEEEEecCCCcEeccceEEEEECCCCCCCCCHHHHhhcCCCchhhh
Confidence 444556777788999999999887655443 22222211 1 1 2356552 110 11
Q ss_pred ---------HHHHHHHHcC-------CCceeeecchhHhHHHHHHH---hCCc-----ccceeehhhhhhhcCCCCccHH
Q psy15183 382 ---------LEVLNEVLTD-------KNIVKVFHGADSDIKWLQKD---FGLY-----VVGMFDTHQACKFLPMPRQSLA 437 (1973)
Q Consensus 382 ---------l~~L~~lL~d-------p~I~KV~H~ak~Dl~~L~r~---~Gi~-----~~nlFDT~lAA~lLg~~~~sLa 437 (1973)
+..+.+++.+ .+.+-|+||+.+|+..|.+. +|+. ...++||...++.+. +..+|.
T Consensus 87 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~iDt~~lar~~~-~~~~L~ 165 (211)
T PRK05168 87 RGAVSEKEALHEIFKMVRKGIKASGCNRAILVAHNAHFDLSFLMAAAERAGLKRNPFHPFSTFDTATLSGLAL-GQTVLA 165 (211)
T ss_pred hcCCChHHHHHHHHHHHHHHHHhcccCCceEEEeccHHhHHHHHHHHHHhCCCCCCCCCCcEeeHHHHHHHHc-CCCCHH
Confidence 1122222221 23456999999999888643 4542 124789977776552 346899
Q ss_pred HHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 438 YLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 438 ~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
.++++| |+..+. ...+=|..||..+..|+..|..++.+.|.
T Consensus 166 ~l~~~~-gl~~~~--------------~~~H~Al~DA~ata~l~~~l~~~~~~~~~ 206 (211)
T PRK05168 166 KACQAA-GIEFDN--------------KEAHSALYDTEKTAELFCEIVNRWKRLGG 206 (211)
T ss_pred HHHHHC-CCCCCC--------------CCCCChHHHHHHHHHHHHHHHHHHHHccC
Confidence 988874 654321 11233889999999999999999987763
No 149
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.91 E-value=1.5 Score=53.40 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=45.7
Q ss_pred EEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q psy15183 1015 GVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDY 1081 (1973)
Q Consensus 1015 gLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~ 1081 (1973)
.+|+|||+..|+++-+++|.++. .+..++||+.++.-+.+..+ ++.+.++++|...
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~~---------L~~~~a~~~k~~~ 250 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILY--TREVPVGTDQLTQEIQRAYS---------LTEEKAEEIKRGG 250 (354)
T ss_pred heeeeecccceEEEEEECCeeee--EeeccCcHHHHHHHHHHHhC---------CChhHhHHHHhCC
Confidence 35999999999999999999995 57889999999999888763 4556677766543
No 150
>PRK06309 DNA polymerase III subunit epsilon; Validated
Probab=93.80 E-value=1 Score=53.22 Aligned_cols=129 Identities=20% Similarity=0.273 Sum_probs=82.1
Q ss_pred CeEEEEeeeccCCccCCcEEEEEEEeC----Cc--eEEEEccC-cc-----------c----------cHHHHHHHHcCC
Q psy15183 341 QEIAIDLEYHNYRSYQGYTCLMQISTR----DK--DYIVDTLK-LR-----------E----------DLEVLNEVLTDK 392 (1973)
Q Consensus 341 ~~IavDtE~~~~~s~~g~l~LIQIst~----~~--~~lID~l~-l~-----------~----------~l~~L~~lL~dp 392 (1973)
..+.+|+|+++.+.-... +|+|+.- .. ..++.|-. +. + .+..+.+++.+.
T Consensus 3 ~~vv~D~ETTGl~~~~d~--IIeig~v~~~~~~~f~~lv~P~~~I~~~a~~IhGIt~e~v~~~p~f~ev~~~~~~fi~~~ 80 (232)
T PRK06309 3 ALIFYDTETTGTQIDKDR--IIEIAAYNGVTSESFQTLVNPEIPIPAEASKIHGITTDEVADAPKFPEAYQKFIEFCGTD 80 (232)
T ss_pred cEEEEEeeCCCCCCCCCE--EEEEEEEcCccccEEEEEeCCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 368899999987754443 4555531 11 23555521 10 0 122455555443
Q ss_pred Cceeeecc-hhHhHHHHHHH---hCCc--ccceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccCCCCCCCc
Q psy15183 393 NIVKVFHG-ADSDIKWLQKD---FGLY--VVGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 464 (1973)
Q Consensus 393 ~I~KV~H~-ak~Dl~~L~r~---~Gi~--~~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~ 464 (1973)
-.-|+|| +.+|+..|.+. +|+. ....+||+-.++.+. .+.++|..|+..| |+....
T Consensus 81 -~~lVaHN~~~FD~~~L~~e~~r~g~~~~~~~~iDt~~l~~~~~~~~~~~~L~~l~~~~-~~~~~~-------------- 144 (232)
T PRK06309 81 -NILVAHNNDAFDFPLLRKECRRHGLEPPTLRTIDSLKWAQKYRPDLPKHNLQYLRQVY-GFEENQ-------------- 144 (232)
T ss_pred -CEEEEeCCHHHHHHHHHHHHHHcCCCCCCCcEEeHHHHHHHHcCCCCCCCHHHHHHHc-CCCCCC--------------
Confidence 3458999 58999998754 3443 246789987776553 4568999998876 554322
Q ss_pred hhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15183 465 PAIQYARTDTHYLLYVYDCMKLDLS 489 (1973)
Q Consensus 465 eql~YAa~Da~~Ll~L~d~L~~~L~ 489 (1973)
.+=|..||.++..|+..+..++.
T Consensus 145 --aH~Al~Da~~t~~vl~~l~~~~~ 167 (232)
T PRK06309 145 --AHRALDDVITLHRVFSALVGDLS 167 (232)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHH
Confidence 13388999999999999877764
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.80 E-value=0.88 Score=63.03 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=64.6
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCCccc-ccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCccccccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYVV-GMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFD 1901 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l~-nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~sd 1901 (1973)
..+.+++.+ -+-|+||+.+|+..|.+. .|..+. ..+||+..++.+- ..+++|..|+++ +|++....
T Consensus 78 ~~~~~~l~~--~~lVaHN~~FD~~fL~~~~~~~g~~~~~~~iDT~~la~~~~p~~~~~~L~~L~~~-lgl~~~~~----- 149 (820)
T PRK07246 78 RHIYDLIED--CIFVAHNVKFDANLLAEALFLEGYELRTPRVDTVELAQVFFPTLEKYSLSHLSRE-LNIDLADA----- 149 (820)
T ss_pred HHHHHHhCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCceeHHHHHHHHhCCCCCCCHHHHHHH-cCCCCCCC-----
Confidence 345566655 346999999999998754 355443 4689998777653 457899999986 57654210
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1902 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1902 W~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
+-|..||.++..|+..|..++...
T Consensus 150 -----------H~Al~DA~ata~L~~~l~~~l~~l 173 (820)
T PRK07246 150 -----------HTAIADARATAELFLKLLQKIESL 173 (820)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHhhc
Confidence 227789999999999999888653
No 152
>PRK07883 hypothetical protein; Validated
Probab=93.77 E-value=0.59 Score=61.93 Aligned_cols=135 Identities=21% Similarity=0.220 Sum_probs=86.4
Q ss_pred HHhcCceeEEEeeeccCCccCCceeEEEEEe---CCce------EEEEcCC-c----------h-----------hhHHH
Q psy15183 1781 ELKQQQEIAIDLEYHNYRSYQGYTCLMQIST---RDKD------YIVDTLK-L----------R-----------EDLEV 1829 (1973)
Q Consensus 1781 ~L~~a~~IavDlE~~~~~s~~g~v~LlQISt---~~~~------~iiD~l~-l----------~-----------~~l~~ 1829 (1973)
.+.+...+.||+|+++.++.... +++|+. .++. .++.+-. + . ..+..
T Consensus 11 ~~~~~~~Vv~D~ETTGl~p~~~~--IIEIgaV~v~~g~iv~~f~~lV~P~~~i~~~~~~itGIt~e~l~~ap~~~evl~~ 88 (557)
T PRK07883 11 PLRDVTFVVVDLETTGGSPAGDA--ITEIGAVKVRGGEVLGEFATLVNPGRPIPPFITVLTGITTAMVAGAPPIEEVLPA 88 (557)
T ss_pred CCcCCCEEEEEEecCCCCCCCCe--EEEEEEEEEECCEEEEEEEEEECCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHH
Confidence 34557889999999987754433 344441 1211 1232210 0 0 01234
Q ss_pred HHHHHcCCCceEeecchHHHHHHHHHh---cCCccc--ccchHHHHHHHC-C---CCCCcHHHHHHHHcCCCCCcccccc
Q psy15183 1830 LNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYVV--GMFDTHQACKFL-P---MPRQSLAYLLKHYCDVDSDKTFQLF 1900 (1973)
Q Consensus 1830 L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l~--nlfDT~lAayLL-~---~~~~sLa~La~~yLg~~l~K~~q~s 1900 (1973)
|..++.+ .+-|+||+.+|..+|.+. +|+... ..+||+..++.+ . ..+++|+.|++ ++|++....
T Consensus 89 f~~fl~~--~~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~iDTl~lar~l~~~~~~~~~~L~~L~~-~~gi~~~~~---- 161 (557)
T PRK07883 89 FLEFARG--AVLVAHNAPFDIGFLRAAAARCGYPWPGPPVLCTVRLARRVLPRDEAPNVRLSTLAR-LFGATTTPT---- 161 (557)
T ss_pred HHHHhcC--CEEEEeCcHHHHHHHHHHHHHcCCCCCCCCcEecHHHHHHhcccCCCCCCCHHHHHH-HCCcccCCC----
Confidence 5556654 345899999999998643 466543 478998876543 2 45679999987 567654211
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1901 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1901 dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
+-|..||.++..|+..+..++.+.
T Consensus 162 ------------H~Al~DA~ata~l~~~l~~~~~~~ 185 (557)
T PRK07883 162 ------------HRALDDARATVDVLHGLIERLGNL 185 (557)
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 238889999999999999998754
No 153
>PRK09145 DNA polymerase III subunit epsilon; Validated
Probab=93.76 E-value=1.1 Score=51.83 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEE---eCCc--------eEEEEcCC-c-------------------
Q psy15183 1775 VTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIS---TRDK--------DYIVDTLK-L------------------- 1823 (1973)
Q Consensus 1775 L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQIS---t~~~--------~~iiD~l~-l------------------- 1823 (1973)
+..+.+.......+.+|+|+++..+....+ ++|+ ..++ ..++.+-. +
T Consensus 19 ~~~~~~~~~~~~~vviD~ETTGl~~~~d~I--ieIgaV~~~~~~~~~~~~f~~~i~p~~~i~~~~~~ihGIt~~~l~~~~ 96 (202)
T PRK09145 19 YAFLFEPPPPDEWVALDCETTGLDPRRAEI--VSIAAVKIRGNRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEDGL 96 (202)
T ss_pred HHHHhcCCCCCCEEEEEeECCCCCCCCCce--EEEEEEEEECCEEeecCceEEEECCCCCCCHhHhhhcCcCHHHHhcCC
Confidence 334444444567899999999877654443 4444 1111 11233211 0
Q ss_pred --hhhHHHHHHHHcCCCceEeecchHHHHHHHHHh----cCCccc-ccchHHHHHH--HC-C----CCCCcHHHHHHHHc
Q psy15183 1824 --REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKD----FGLYVV-GMFDTHQACK--FL-P----MPRQSLAYLLKHYC 1889 (1973)
Q Consensus 1824 --~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~----~GI~l~-nlfDT~lAay--LL-~----~~~~sLa~La~~yL 1889 (1973)
...+..|..++.+ ..-|+||+.+|..+|.+. +|..+. ..+|++...+ .. . ..+++|+.++++|
T Consensus 97 ~~~~vl~~~~~~i~~--~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~L~~l~~~~- 173 (202)
T PRK09145 97 SEEEALRQLLAFIGN--RPLVGYYLEFDVAMLNRYVRPLLGIPLPNPLIEVSALYYDKKERHLPDAYIDLRFDAILKHL- 173 (202)
T ss_pred CHHHHHHHHHHHHcC--CeEEEeCHHHHHHHHHHHHHHhcCCCCCCCeeeHHHHHHHHhhccCCCcccCCCHHHHHHHc-
Confidence 0123455566654 346999999999988643 344443 3678864332 11 1 2357999999775
Q ss_pred CCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1890 DVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 1930 (1973)
Q Consensus 1890 g~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~ 1930 (1973)
|++... . +-|..||.++..||..|.
T Consensus 174 gi~~~~---~-------------H~Al~DA~ata~l~~~l~ 198 (202)
T PRK09145 174 DLPVLG---R-------------HDALNDAIMAALIFLRLR 198 (202)
T ss_pred CCCCCC---C-------------CCcHHHHHHHHHHHHHHH
Confidence 654321 1 127789999999998874
No 154
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial. This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria.
Probab=93.73 E-value=0.76 Score=54.08 Aligned_cols=87 Identities=24% Similarity=0.295 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCC--c-c---cccchHHHHHHHCC-CCCCcHHHHHHHHcCCCCCccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGL--Y-V---VGMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTF 1897 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI--~-l---~nlfDT~lAayLL~-~~~~sLa~La~~yLg~~l~K~~ 1897 (1973)
..|.+++.+. .-|+||+.+|+.+|.+. +|. . + ..++||+..++.+- ..+++|+.|+++| |+.....
T Consensus 74 ~~f~~fi~~~--~lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~L~~~~-gi~~~~r- 149 (225)
T TIGR01406 74 DEFLDFIGGS--ELVIHNAAFDVGFLNYELERLGPTIKKIGEFCRVIDTLAMARERFPGQRNSLDALCKRF-KVDNSHR- 149 (225)
T ss_pred HHHHHHhCCC--EEEEEecHHHHHHHHHHHHHhCCCCcccccCCCEEEHHHHHHHHcCCCCCCHHHHHHhc-CCCCCCC-
Confidence 3455666553 34899999999998643 452 2 1 35789998776553 3457999999987 5432211
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1898 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 1931 (1973)
Q Consensus 1898 q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~ 1931 (1973)
+ .+-|..||..+..||..|..
T Consensus 150 ~-------------~H~Al~DA~~~a~v~~~l~~ 170 (225)
T TIGR01406 150 T-------------LHGALLDAHLLAEVYLALTG 170 (225)
T ss_pred C-------------CcCHHHHHHHHHHHHHHHHc
Confidence 0 12277899999999988854
No 155
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family. All proteins in this family for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the n-terminal region of DinG from some low GC gram positive bacteria. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.70 E-value=0.64 Score=54.28 Aligned_cols=92 Identities=21% Similarity=0.284 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHhcC---Cc--c-cccchHHHHHHHCC----CCCCcHHHHHHHHcCCCCCccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFG---LY--V-VGMFDTHQACKFLP----MPRQSLAYLLKHYCDVDSDKTF 1897 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~G---I~--l-~nlfDT~lAayLL~----~~~~sLa~La~~yLg~~l~K~~ 1897 (1973)
..|..++.+ -.-|+||+.+|+.+|.+.+. .. . ..++||+..++.+. ..+++|..|+++| |++....
T Consensus 79 ~~~~~~~~~--~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~dtl~l~~~~~~~~~~~~~~L~~l~~~~-gl~~~~~- 154 (217)
T TIGR00573 79 EDFADYIRG--AELVIHNASFDVGFLNYEFSKLYKVEPKTNDVIDTTDTLQYARPEFPGKRNTLDALCKRY-EITNSHR- 154 (217)
T ss_pred HHHHHHhCC--CEEEEeccHHHHHHHHHHHHHhcCCCCCccceecHHHHHHHHHHhCCCCCCCHHHHHHHc-CCCCCCc-
Confidence 345556654 34589999999999976542 11 1 23678876554432 2356899999876 5432110
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1898 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1898 q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
. .+-|..||.++..|+..+..+....
T Consensus 155 ~-------------~H~Al~DA~~ta~l~~~l~~~~~~~ 180 (217)
T TIGR00573 155 A-------------LHGALADAFILAKLYLVMTGKQTKY 180 (217)
T ss_pred c-------------cCCHHHHHHHHHHHHHHHHhcchhh
Confidence 0 1227789999999999998776543
No 156
>KOG2405|consensus
Probab=93.63 E-value=0.017 Score=69.61 Aligned_cols=126 Identities=19% Similarity=0.175 Sum_probs=86.1
Q ss_pred EEEEEeCCceEEEEccCcccc-H-HHHHHHHcCCCceeeecchhHhHHHHHHHhCCcccceeehhhhhhhcCCC----Cc
Q psy15183 361 LMQISTRDKDYIVDTLKLRED-L-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP----RQ 434 (1973)
Q Consensus 361 LIQIst~~~~~lID~l~l~~~-l-~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~----~~ 434 (1973)
+|+|+++...|++|.+.-+.. + .-.+..++...+ |. |+..++..+...|++.+.|++|||+|..++... ++
T Consensus 215 ~m~ia~~n~i~llD~~~sdi~il~~gyK~~LEs~~~--vi-Dr~r~~e~l~~~y~~~L~nVkDtQia~sLve~~e~grr~ 291 (458)
T KOG2405|consen 215 YMNIADGNEIFLLDSLPSDIRILFGGYKRELESLEK--VI-DRIRLIEQLDTTYHSALKNVKDTQIASSLVEPSEYGRRH 291 (458)
T ss_pred hhhhcccchhhhhhhccCCcEEecccchhhhhhcce--eh-hhhhhhHHHHhHHHHHHHhhHHHHHHHHHhhhHHhcccC
Confidence 489999999999998753211 1 224445665444 45 999999999999999999999999999988522 12
Q ss_pred cHHHHHH--------HHcCCCCCcc-------ccc-ccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15183 435 SLAYLLK--------HYCDVDSDKT-------FQL-FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 489 (1973)
Q Consensus 435 sLa~Lv~--------~ylgv~ldK~-------~q~-sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~ 489 (1973)
....++. .|++....+. .+. -.|..||.++.+.+-++.|++.|+..++.|.+..-
T Consensus 292 p~~~lIsft~Lq~~~~y~~~s~~~~eev~~~l~~dp~~w~irp~te~~~~~~h~dv~~Ll~~~~~l~a~~l 362 (458)
T KOG2405|consen 292 PTSILISFTCLQTYIFYIKASGLIFEEVAKILEADPPRWVIRPSTEIADHLLHRDVISLLGIFDTLVAVCL 362 (458)
T ss_pred CccceeeeEeccccceeehhhhhhHHHHHHHHhcCCCcceecccHHHHHHHHHHHHHHHHHHHhhHhhhCh
Confidence 2222211 2222221111 112 25999999999999999999999998766655443
No 157
>PRK09145 DNA polymerase III subunit epsilon; Validated
Probab=93.63 E-value=0.96 Score=52.18 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=79.6
Q ss_pred HHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEe---CCc--------eEEEEccC-c--------------------
Q psy15183 331 TQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST---RDK--------DYIVDTLK-L-------------------- 378 (1973)
Q Consensus 331 ~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst---~~~--------~~lID~l~-l-------------------- 378 (1973)
..+.+.......+++|+|+++.++..+. +++|+. .++ .++|.|-. +
T Consensus 20 ~~~~~~~~~~~~vviD~ETTGl~~~~d~--IieIgaV~~~~~~~~~~~~f~~~i~p~~~i~~~~~~ihGIt~~~l~~~~~ 97 (202)
T PRK09145 20 AFLFEPPPPDEWVALDCETTGLDPRRAE--IVSIAAVKIRGNRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEDGLS 97 (202)
T ss_pred HHHhcCCCCCCEEEEEeECCCCCCCCCc--eEEEEEEEEECCEEeecCceEEEECCCCCCCHhHhhhcCcCHHHHhcCCC
Confidence 3444444446789999999987765444 344441 111 23444421 0
Q ss_pred -cccHHHHHHHHcCCCceeeecchhHhHHHHHHHh----CCcc-cceeehhhhhh--hc-----CCCCccHHHHHHHHcC
Q psy15183 379 -REDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF----GLYV-VGMFDTHQACK--FL-----PMPRQSLAYLLKHYCD 445 (1973)
Q Consensus 379 -~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~----Gi~~-~nlFDT~lAA~--lL-----g~~~~sLa~Lv~~ylg 445 (1973)
.+.+..|..++.+. ..|+||+.+|+..|.+.+ |..+ ...+|++-..+ .. +..+++|+.|+++| |
T Consensus 98 ~~~vl~~~~~~i~~~--~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~L~~l~~~~-g 174 (202)
T PRK09145 98 EEEALRQLLAFIGNR--PLVGYYLEFDVAMLNRYVRPLLGIPLPNPLIEVSALYYDKKERHLPDAYIDLRFDAILKHL-D 174 (202)
T ss_pred HHHHHHHHHHHHcCC--eEEEeCHHHHHHHHHHHHHHhcCCCCCCCeeeHHHHHHHHhhccCCCcccCCCHHHHHHHc-C
Confidence 01234556666653 358999999999986543 4443 45678853321 11 12357999999765 6
Q ss_pred CCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHH
Q psy15183 446 VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 485 (1973)
Q Consensus 446 v~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~ 485 (1973)
+..... +=|..||..+..||..|.
T Consensus 175 i~~~~~----------------H~Al~DA~ata~l~~~l~ 198 (202)
T PRK09145 175 LPVLGR----------------HDALNDAIMAALIFLRLR 198 (202)
T ss_pred CCCCCC----------------CCcHHHHHHHHHHHHHHH
Confidence 544221 227899999999998774
No 158
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=93.62 E-value=0.025 Score=63.19 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=66.5
Q ss_pred HHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCC
Q psy15183 987 FECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHI 1066 (1973)
Q Consensus 987 FE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~ 1066 (1973)
.|.-|...++...++.++++-.+. ..|.|||+|.++|-|.-+-+|.+++.+ --+-||-|++-.|.. .
T Consensus 116 iESAGlevl~vlDEPTAaa~vL~l--~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvlAG---------~ 182 (277)
T COG4820 116 IESAGLEVLHVLDEPTAAADVLQL--DDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVLAG---------N 182 (277)
T ss_pred ecccCceeeeecCCchhHHHHhcc--CCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEEec---------c
Confidence 477899999999999999999999 999999999999999999999999765 457899988755432 1
Q ss_pred CCCCHHHHHHHHHHh
Q psy15183 1067 NSITPSRSEELLWDY 1081 (1973)
Q Consensus 1067 ~~~~~~~~e~iKe~~ 1081 (1973)
..++.+.+|++|..+
T Consensus 183 ygi~~EeAE~~Kr~~ 197 (277)
T COG4820 183 YGISLEEAEQYKRGH 197 (277)
T ss_pred cCcCHhHHHHhhhcc
Confidence 245666777777543
No 159
>PRK05711 DNA polymerase III subunit epsilon; Provisional
Probab=93.59 E-value=0.65 Score=55.13 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=57.6
Q ss_pred HHHHHHcCCCceEeecchHHHHHHHHHh---cCCcc------cccchHHHHHHHCC-CCCCcHHHHHHHHcCCCCCcccc
Q psy15183 1829 VLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV------VGMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTFQ 1898 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l------~nlfDT~lAayLL~-~~~~sLa~La~~yLg~~l~K~~q 1898 (1973)
.+.+++.+. . .|+||+.+|+.+|.+. +|..+ +.++||...++.+- ..+++|..|+++| |++.... +
T Consensus 79 ~f~~fi~~~-~-lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~lar~~~p~~~~~L~aL~~~~-gi~~~~r-~ 154 (240)
T PRK05711 79 EFLDFIRGA-E-LIIHNAPFDIGFMDYEFALLGRDIPKTNTFCKVTDTLAMARRMFPGKRNSLDALCKRY-GIDNSHR-T 154 (240)
T ss_pred HHHHHhCCC-E-EEEEccHHhHHHHHHHHHHhCCCCCcccccCceeeHHHHHHHHcCCCCCCHHHHHHHC-CCCCCCC-C
Confidence 455555543 3 4899999999888643 34222 35789998776653 3456999999887 5442211 1
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1899 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1899 ~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
.+-|..||..+..+|..|...
T Consensus 155 -------------~H~AL~DA~~~A~v~~~l~~~ 175 (240)
T PRK05711 155 -------------LHGALLDAEILAEVYLAMTGG 175 (240)
T ss_pred -------------CCCHHHHHHHHHHHHHHHHCc
Confidence 122778999999999888643
No 160
>PRK05711 DNA polymerase III subunit epsilon; Provisional
Probab=93.51 E-value=0.67 Score=55.05 Aligned_cols=128 Identities=22% Similarity=0.302 Sum_probs=79.3
Q ss_pred CeEEEEeeeccCCcc-CCcEEEEEEEe---------CC-ceEEEEccC-cc---------------------ccHHHHHH
Q psy15183 341 QEIAIDLEYHNYRSY-QGYTCLMQIST---------RD-KDYIVDTLK-LR---------------------EDLEVLNE 387 (1973)
Q Consensus 341 ~~IavDtE~~~~~s~-~g~l~LIQIst---------~~-~~~lID~l~-l~---------------------~~l~~L~~ 387 (1973)
..+.+|+|+.+..+. .. .+|+|+. .+ -..+|.|-. +. +.+..|.+
T Consensus 5 r~vvlDtETTGldp~~~d--rIIEIGaV~v~~~~~~~~~f~~~i~P~~~i~~~a~~VHGIT~e~l~~~p~f~ev~~~f~~ 82 (240)
T PRK05711 5 RQIVLDTETTGLNQREGH--RIIEIGAVELINRRLTGRNFHVYIKPDRLVDPEALAVHGITDEFLADKPTFAEVADEFLD 82 (240)
T ss_pred eEEEEEeeCCCcCCCCCC--eEEEEEEEEEECCEEeccEEEEEECcCCcCCHHHhhhcCCCHHHHcCCCCHHHHHHHHHH
Confidence 578999999988764 23 3344441 11 134666621 10 11234555
Q ss_pred HHcCCCceeeecchhHhHHHHHHHh---CCc------ccceeehhhhhhhc-CCCCccHHHHHHHHcCCCCCcccccccC
Q psy15183 388 VLTDKNIVKVFHGADSDIKWLQKDF---GLY------VVGMFDTHQACKFL-PMPRQSLAYLLKHYCDVDSDKTFQLFDW 457 (1973)
Q Consensus 388 lL~dp~I~KV~H~ak~Dl~~L~r~~---Gi~------~~nlFDT~lAA~lL-g~~~~sLa~Lv~~ylgv~ldK~~q~sDW 457 (1973)
++.+.. .|+||+.+|+.+|.+.+ |.. ...++||...++.+ ...+++|..|+++| |+....
T Consensus 83 fi~~~~--lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~lar~~~p~~~~~L~aL~~~~-gi~~~~------- 152 (240)
T PRK05711 83 FIRGAE--LIIHNAPFDIGFMDYEFALLGRDIPKTNTFCKVTDTLAMARRMFPGKRNSLDALCKRY-GIDNSH------- 152 (240)
T ss_pred HhCCCE--EEEEccHHhHHHHHHHHHHhCCCCCcccccCceeeHHHHHHHHcCCCCCCHHHHHHHC-CCCCCC-------
Confidence 665543 48999999999886543 322 14578998777654 23457999999876 543211
Q ss_pred CCCCCCchhHhHHHHhHHHHHHHHHHHHHH
Q psy15183 458 RHRPLPEPAIQYARTDTHYLLYVYDCMKLD 487 (1973)
Q Consensus 458 ~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~ 487 (1973)
| ..+=|..||..+..+|-.|...
T Consensus 153 --r-----~~H~AL~DA~~~A~v~~~l~~~ 175 (240)
T PRK05711 153 --R-----TLHGALLDAEILAEVYLAMTGG 175 (240)
T ss_pred --C-----CCCCHHHHHHHHHHHHHHHHCc
Confidence 1 1233889999999999887543
No 161
>TIGR01298 RNaseT ribonuclease T. in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases.
Probab=93.49 E-value=0.63 Score=53.73 Aligned_cols=83 Identities=19% Similarity=0.111 Sum_probs=58.5
Q ss_pred CceEeecchHHHHHHHHHh---cCCcc-----cccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCH
Q psy15183 1838 NIVKVFHGADSDIKWLQKD---FGLYV-----VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 1909 (1973)
Q Consensus 1838 ~I~KV~Hg~K~Di~~Lqr~---~GI~l-----~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~ 1909 (1973)
+-+-|+||+.+|+.+|.+. +|... ...+||+..++.+. +..+|+.++++| |+....
T Consensus 105 ~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~lDTl~lar~~~-~~~~L~~l~~~~-gi~~~~-------------- 168 (200)
T TIGR01298 105 RAILVGHNANFDLGFLNAAVERTSLKRNPFHPFSTFDTATLAGLAY-GQTVLAKACQAA-GXDFDS-------------- 168 (200)
T ss_pred CCEEEEECchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHHHHHc-CcccHHHHHHHc-CCCccc--------------
Confidence 3457999999999998643 34321 23689999887653 456899999875 544311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1910 PAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1910 eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
.+.+-|-.||..+..|+..|..++.+.
T Consensus 169 ~~~H~Al~Da~ata~lf~~l~~~~~~~ 195 (200)
T TIGR01298 169 TQAHSALYDTEKTAELFCEIVNRWKRL 195 (200)
T ss_pred cchhhhHHhHHHHHHHHHHHHHHHHHc
Confidence 112347789999999999999988765
No 162
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=93.49 E-value=0.18 Score=68.63 Aligned_cols=137 Identities=21% Similarity=0.295 Sum_probs=100.0
Q ss_pred HHhcCCeEEEEeeeccCCccCCcEEEEEEEeC----Cc-----eEEEEccC-c----------c-----------ccHHH
Q psy15183 336 ELKQQQEIAIDLEYHNYRSYQGYTCLMQISTR----DK-----DYIVDTLK-L----------R-----------EDLEV 384 (1973)
Q Consensus 336 ~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~----~~-----~~lID~l~-l----------~-----------~~l~~ 384 (1973)
.|..+..+.+|+|+.++.+.+.. +|||+.. +. .++|+|-. + . ..+..
T Consensus 417 ~l~datyVVfDiETTGLs~~~d~--iIE~aAvKikng~iId~f~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~vL~k 494 (1444)
T COG2176 417 KLDDATYVVFDIETTGLSPVYDE--IIEIAAVKIKNGRIIDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEK 494 (1444)
T ss_pred ccccccEEEEEeecCCcCcccch--hhhheeeeeeCCcchHHHHHhcCCCCcCchhhhhccccCHHHHcCCccHHHHHHH
Confidence 35667899999999998877765 4666531 11 23444421 1 0 12456
Q ss_pred HHHHHcCCCceeeecchhHhHHHHHHH---hCCcc--cceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccC
Q psy15183 385 LNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDW 457 (1973)
Q Consensus 385 L~~lL~dp~I~KV~H~ak~Dl~~L~r~---~Gi~~--~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW 457 (1973)
+++++.|. +-|.||+.+|+-.|... +|+.+ .++.||.-.|+.|. +.+|+|..|+++| ++.+
T Consensus 495 f~~~~~d~--IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~-~v~l--------- 562 (1444)
T COG2176 495 FREFIGDS--ILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKL-GVEL--------- 562 (1444)
T ss_pred HHHHhcCc--EEEeccCccchhHHHHHHHHhCCccccCchhhHHHHHHHhChhhhhcchHHHHHHh-CccH---------
Confidence 77788764 34899999999988654 45554 67899999999997 6789999999986 4443
Q ss_pred CCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 458 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 458 ~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
++.+-|--||.++-+++-.+.+.|.+.|-
T Consensus 563 -------e~hHRA~yDaeat~~vf~~f~~~~ke~Gi 591 (1444)
T COG2176 563 -------ERHHRADYDAEATAKVFFVFLKDLKEKGI 591 (1444)
T ss_pred -------HHhhhhhhhHHHHHHHHHHHHHHHHHhch
Confidence 33455778999999999999999999983
No 163
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative
Probab=93.26 E-value=0.68 Score=53.02 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=63.8
Q ss_pred HHHHHHHHcC--CCceeeecch-hHhHHHHHH---HhCCcc-----------------------c-ceeehhhhhhhc-C
Q psy15183 382 LEVLNEVLTD--KNIVKVFHGA-DSDIKWLQK---DFGLYV-----------------------V-GMFDTHQACKFL-P 430 (1973)
Q Consensus 382 l~~L~~lL~d--p~I~KV~H~a-k~Dl~~L~r---~~Gi~~-----------------------~-nlFDT~lAA~lL-g 430 (1973)
+..+.+++.+ |.+ -|+||. .+|+..|.. .+|+.. + .++|+...++-. .
T Consensus 67 L~~f~~~i~~~dpdi-ivg~N~~~FD~~~L~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~gr~~~D~~~~~r~~~~ 145 (199)
T cd05160 67 LKRFFDIIREYDPDI-LTGYNIDDFDLPYLLKRAEALGIKLTDGIYRRSGGEKSSGSTERIAVKGRVVFDLLAAYKRDFK 145 (199)
T ss_pred HHHHHHHHHhcCCCE-EEEeccCCCcHHHHHHHHHHhCCCcccccccccCCCccCCcccceeeeccEeeehHHHHHHhcC
Confidence 3445555554 555 489999 789988764 345444 1 257988766543 4
Q ss_pred CCCccHHHHHHHHcCCCCCc--ccccccCCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 431 MPRQSLAYLLKHYCDVDSDK--TFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 431 ~~~~sLa~Lv~~ylgv~ldK--~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
.++++|..+++++++..-.. .....+|....-....++|...||..++.|+
T Consensus 146 l~sy~L~~v~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~~Y~~~D~~~~~~l~ 198 (199)
T cd05160 146 LKSYTLDAVAEELLGEGKEKVDGEIIEDAEWEEDPERLIEYNLKDAELTLQIL 198 (199)
T ss_pred cccCCHHHHHHHHhCCCCCcCCHHHHhhccCcchHHHHHHHHHHHHHHHHHhh
Confidence 66799999999999864322 1122232111223567799999999998875
No 164
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.
Probab=93.03 E-value=1.3 Score=50.73 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=53.9
Q ss_pred ceeeecchhHhHHHHHH---HhCCc-----ccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCch
Q psy15183 394 IVKVFHGADSDIKWLQK---DFGLY-----VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 465 (1973)
Q Consensus 394 I~KV~H~ak~Dl~~L~r---~~Gi~-----~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~e 465 (1973)
.+-|+||+.+|+..|.+ .+|+. ....+||+..++.+. +..+|+.++++| |+..+. .
T Consensus 103 ~~lVaHna~FD~~fL~~~~~~~~~~~~~~~~~~~lDt~~la~~~~-~~~~L~~l~~~~-gi~~~~--------------~ 166 (189)
T cd06134 103 AILVGHNAHFDLGFLNAAVARCKIKRNPFHPFSTFDTATLAGLAY-GQTVLAKACQAA-GIEFDN--------------K 166 (189)
T ss_pred CeEEEecchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHHHHHh-CCCcHHHHHHHC-CCCCCC--------------C
Confidence 35699999999998864 35551 235799988776653 346899988864 654321 1
Q ss_pred hHhHHHHhHHHHHHHHHHHHHH
Q psy15183 466 AIQYARTDTHYLLYVYDCMKLD 487 (1973)
Q Consensus 466 ql~YAa~Da~~Ll~L~d~L~~~ 487 (1973)
..+=|..||..+..|+..|.++
T Consensus 167 ~~H~Al~DA~ata~lf~~l~~~ 188 (189)
T cd06134 167 EAHSALYDTQKTAELFCKIVNR 188 (189)
T ss_pred CCcChHHHHHHHHHHHHHHHHh
Confidence 1233889999999998887543
No 165
>PRK06309 DNA polymerase III subunit epsilon; Validated
Probab=93.03 E-value=1.6 Score=51.52 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=60.4
Q ss_pred HHHHHHcCCCceEeecc-hHHHHHHHHHh---cCCcc--cccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCcccccc
Q psy15183 1829 VLNEVLTDKNIVKVFHG-ADSDIKWLQKD---FGLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLF 1900 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg-~K~Di~~Lqr~---~GI~l--~nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~s 1900 (1973)
.+.+++.+ ...-|+|| ..+|+.+|.+. +|+.. ...+||+-.++.+. .+.++|..|++.| |+....
T Consensus 72 ~~~~fi~~-~~~lVaHN~~~FD~~~L~~e~~r~g~~~~~~~~iDt~~l~~~~~~~~~~~~L~~l~~~~-~~~~~~----- 144 (232)
T PRK06309 72 KFIEFCGT-DNILVAHNNDAFDFPLLRKECRRHGLEPPTLRTIDSLKWAQKYRPDLPKHNLQYLRQVY-GFEENQ----- 144 (232)
T ss_pred HHHHHHcC-CCEEEEeCCHHHHHHHHHHHHHHcCCCCCCCcEEeHHHHHHHHcCCCCCCCHHHHHHHc-CCCCCC-----
Confidence 44455543 34569999 58999988643 45442 25789988777653 4567999999887 544321
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1901 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 1934 (1973)
Q Consensus 1901 dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~ 1934 (1973)
. +-|..||.++..|+..+..++.
T Consensus 145 --a---------H~Al~Da~~t~~vl~~l~~~~~ 167 (232)
T PRK06309 145 --A---------HRALDDVITLHRVFSALVGDLS 167 (232)
T ss_pred --C---------CCcHHHHHHHHHHHHHHHHHHH
Confidence 1 2277899999999999887764
No 166
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.98 E-value=0.75 Score=63.71 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=87.0
Q ss_pred CCeEEEEeeeccCCccCCcEEEEEEEe---CCc------eEEEEccC-cc---------------------ccHHHHHHH
Q psy15183 340 QQEIAIDLEYHNYRSYQGYTCLMQIST---RDK------DYIVDTLK-LR---------------------EDLEVLNEV 388 (1973)
Q Consensus 340 ~~~IavDtE~~~~~s~~g~l~LIQIst---~~~------~~lID~l~-l~---------------------~~l~~L~~l 388 (1973)
...++||+|+.+.++. . .+|||+. .++ ..+|.|-. +. +.+..|.++
T Consensus 7 ~~~vvvD~ETTGl~~~-d--~IIeIgaV~v~~g~i~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~~~~~ 83 (820)
T PRK07246 7 RKYAVVDLEATGAGPN-A--SIIQVGIVIIEGGEIIDSYTTDVNPHEPLDEHIKHLTGITDQQLAQAPDFSQVARHIYDL 83 (820)
T ss_pred CCEEEEEEecCCcCCC-C--eEEEEEEEEEECCEEEEEEEEEeCcCCCCCHhHhhcCCCCHHHHhcCCCHHHHHHHHHHH
Confidence 4689999999987642 3 4566653 121 12344421 10 112355666
Q ss_pred HcCCCceeeecchhHhHHHHHHHh---CCcc-cceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccCCCCCC
Q psy15183 389 LTDKNIVKVFHGADSDIKWLQKDF---GLYV-VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 462 (1973)
Q Consensus 389 L~dp~I~KV~H~ak~Dl~~L~r~~---Gi~~-~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPL 462 (1973)
+.+. +-|+||+.+|+..|.+.+ |... ...+||+..++.+- .++++|..|++. +|+.....
T Consensus 84 l~~~--~lVaHN~~FD~~fL~~~~~~~g~~~~~~~iDT~~la~~~~p~~~~~~L~~L~~~-lgl~~~~~----------- 149 (820)
T PRK07246 84 IEDC--IFVAHNVKFDANLLAEALFLEGYELRTPRVDTVELAQVFFPTLEKYSLSHLSRE-LNIDLADA----------- 149 (820)
T ss_pred hCCC--EEEEECcHHHHHHHHHHHHHcCCCCCCCceeHHHHHHHHhCCCCCCCHHHHHHH-cCCCCCCC-----------
Confidence 6653 359999999999997643 5543 45689988776542 457899999986 57654321
Q ss_pred CchhHhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 463 PEPAIQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 463 s~eql~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
+=|..||..+..|+..|..++.+.+
T Consensus 150 -----H~Al~DA~ata~L~~~l~~~l~~l~ 174 (820)
T PRK07246 150 -----HTAIADARATAELFLKLLQKIESLP 174 (820)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2388999999999999998887655
No 167
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A ....
Probab=92.91 E-value=0.29 Score=54.09 Aligned_cols=141 Identities=16% Similarity=0.233 Sum_probs=74.6
Q ss_pred EEEEeeeccCCccCCcEEEEEEEe--CCc-eEEEEccCcc-ccHHHHH---HHHcCCCceeeecchhHhHHHHHHHh---
Q psy15183 343 IAIDLEYHNYRSYQGYTCLMQIST--RDK-DYIVDTLKLR-EDLEVLN---EVLTDKNIVKVFHGADSDIKWLQKDF--- 412 (1973)
Q Consensus 343 IavDtE~~~~~s~~g~l~LIQIst--~~~-~~lID~l~l~-~~l~~L~---~lL~dp~I~KV~H~ak~Dl~~L~r~~--- 412 (1973)
+.+|+|+.+..+..+.+.++.+.. ++. .+++....-. .....+. ..+.....+..+|+..+|+..|.+.+
T Consensus 1 l~~DIET~Gl~~~~~~i~liG~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~iv~yng~~FD~p~L~~~~~~~ 80 (164)
T PF13482_consen 1 LFFDIETTGLSPDNDTIYLIGVADFDDDEIITFIQWFAEDPDEEEIILEFFELLDEADNIVTYNGKNFDIPFLKRRAKRY 80 (164)
T ss_dssp --EEEEESS-GG-G---EEEEEEE-ETTTTE-EEEE-GGGHHHHHHHHH--HHHHTT--EEESSTTTTHHHHHHHHH-HH
T ss_pred CcEEecCCCCCCCCCCEEEEEEEEeCCCceEEeeHhhccCcHHHHHHHHHHHHHhcCCeEEEEeCcccCHHHHHHHHHHc
Confidence 468999998877667777787774 332 2233322211 1122222 45666666656666788999997665
Q ss_pred CCc-ccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCc----cccc----ccCCC---CCCCchhHhHHHHhHHHHHHH
Q psy15183 413 GLY-VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDK----TFQL----FDWRH---RPLPEPAIQYARTDTHYLLYV 480 (1973)
Q Consensus 413 Gi~-~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK----~~q~----sDW~~---RPLs~eql~YAa~Da~~Ll~L 480 (1973)
++. ..+.+|++..++-...++++|..+... +|+.-.. +.+. ..|.. +-..+.++.|...|+..+..|
T Consensus 81 ~~~~~~~~iDl~~~~~~~~~~~~~Lk~ve~~-lg~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~yN~~Dv~~~~~L 159 (164)
T PF13482_consen 81 GLPPPFNHIDLLKIIKKHFLESYSLKNVEKF-LGIERRDDDISGSESVKLYKEYLETGDPEALEEILEYNEDDVRATRRL 159 (164)
T ss_dssp HH--GGGEEEHHHHHT-TTSCCTT--SHHH------------HHHHHHHHHH---TTGGTS--HHHHHHHHHHHHHHHHH
T ss_pred CCCcccchhhHHHHHHhccCCCCCHHHHhhh-cccccccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 467789998887555567789887766 6765431 1111 11211 234577889999999999999
Q ss_pred HHHH
Q psy15183 481 YDCM 484 (1973)
Q Consensus 481 ~d~L 484 (1973)
++.|
T Consensus 160 ~~~l 163 (164)
T PF13482_consen 160 YEWL 163 (164)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9887
No 168
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=92.89 E-value=1.2 Score=62.05 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=85.9
Q ss_pred eEEEEeeeccCCccCCcEEEEEEEe----CCc-----eEEEEccC-cc---------------------ccHHHHHHHHc
Q psy15183 342 EIAIDLEYHNYRSYQGYTCLMQIST----RDK-----DYIVDTLK-LR---------------------EDLEVLNEVLT 390 (1973)
Q Consensus 342 ~IavDtE~~~~~s~~g~l~LIQIst----~~~-----~~lID~l~-l~---------------------~~l~~L~~lL~ 390 (1973)
.++||+|+++.++.... +|||+. .+. ..+|.|.. +. +.+..|.+++.
T Consensus 2 ~vvvD~ETTG~~~~~~~--IIeig~v~v~~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~l~~~l~ 79 (850)
T TIGR01407 2 YAVVDLETTGTQLSFDK--IIQIGIVVVEDGEIVDTFHTDVNPNEPIPPFIQELTGISDNMLQQAPYFSQVAQEIYDLLE 79 (850)
T ss_pred EEEEEEECCCCCCCCCe--EEEEEEEEEECCEEEEEEEEEeCCCCCCChhhhhhcCcCHHHHhCCCCHHHHHHHHHHHhC
Confidence 57899999987754443 455542 111 23455431 10 11235556665
Q ss_pred CCCceeeecchhHhHHHHHHH---hCCc--ccceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccCCCCCCC
Q psy15183 391 DKNIVKVFHGADSDIKWLQKD---FGLY--VVGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP 463 (1973)
Q Consensus 391 dp~I~KV~H~ak~Dl~~L~r~---~Gi~--~~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs 463 (1973)
+. +-|+||+.+|+.+|.+. .|+. ....+||+..++.+. ..+++|.+|+++ +|+..+..
T Consensus 80 ~~--~~VahN~~fD~~fL~~~~~~~g~~~~~~~~iDt~~l~~~~~p~~~~~~L~~l~~~-~gi~~~~~------------ 144 (850)
T TIGR01407 80 DG--IFVAHNVHFDLNFLAKALKDCGYEPLPKPRIDTVELAQIFFPTEESYQLSELSEA-LGLTHENP------------ 144 (850)
T ss_pred CC--EEEEeCcHHHHHHHHHHHHHcCCCCCCCCeEeHHHHHHHhcCCCCCCCHHHHHHH-CCCCCCCC------------
Confidence 53 35999999999999654 4554 356789987776653 456899999887 46654321
Q ss_pred chhHhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 464 EPAIQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 464 ~eql~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
+=|..||..+..|+..|..++.+..
T Consensus 145 ----H~Al~DA~ata~l~~~l~~~~~~l~ 169 (850)
T TIGR01407 145 ----HRADSDAQATAELLLLLFEKMEKLP 169 (850)
T ss_pred ----CChHHHHHHHHHHHHHHHHHHHhcC
Confidence 3388999999999999988887654
No 169
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show
Probab=92.86 E-value=1.5 Score=50.46 Aligned_cols=102 Identities=15% Similarity=0.277 Sum_probs=67.3
Q ss_pred HHHHHHHHcC--CCceEeecchH-HHHHHHHHh---cCCccc------------------------ccchHHHHHHH-CC
Q psy15183 1827 LEVLNEVLTD--KNIVKVFHGAD-SDIKWLQKD---FGLYVV------------------------GMFDTHQACKF-LP 1875 (1973)
Q Consensus 1827 l~~L~~lLed--p~I~KV~Hg~K-~Di~~Lqr~---~GI~l~------------------------nlfDT~lAayL-L~ 1875 (1973)
+..+..++.. |.+ -||||.. +|+..|... +|+... -.+|++..++- ++
T Consensus 60 L~~F~~~i~~~dpdi-ivgyN~~~FD~pyL~~R~~~~gi~~~~~r~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~~~~~~ 138 (195)
T cd05780 60 IKRFIEIVKEKDPDV-IYTYNGDNFDFPYLKKRAEKLGIELDLGRDGSEIKIQRGGFNNASEIKGRIHVDLYPVARRTLN 138 (195)
T ss_pred HHHHHHHHHHcCCCE-EEecCCCCCcHHHHHHHHHHhCCCCccccCCCceeEeecceeeeeccCCeEEEeHHHHHHhhCC
Confidence 4445555554 776 4899974 698877532 455421 15788876554 45
Q ss_pred CCCCcHHHHHHHHcCCCCCcc--ccccc-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1876 MPRQSLAYLLKHYCDVDSDKT--FQLFD-WRHRPLPEPAIQYARTDTHYLLYVYDCM 1929 (1973)
Q Consensus 1876 ~~~~sLa~La~~yLg~~l~K~--~q~sd-W~~RPLs~eqi~YAa~DA~~LL~Lyd~L 1929 (1973)
.++++|..+++++||.....- .+... |...+-....+.|+..||..+++|.+.|
T Consensus 139 l~sy~L~~v~~~~Lg~~k~d~~~~~i~~~~~~~~~~~~l~~Y~~~D~~lt~~L~~~~ 195 (195)
T cd05780 139 LTRYTLERVYEELFGIEKEDVPGEEIAEAWDSGENLERLFRYSMEDAKYTYEIGKEF 195 (195)
T ss_pred CCcCcHHHHHHHHhCCCCCcCCHHHHHHHHhCCCchHHHHHHhHHHHHHHHHHHhhC
Confidence 778899999999999754211 12222 4444345667899999999999998753
No 170
>PRK09146 DNA polymerase III subunit epsilon; Validated
Probab=92.84 E-value=1.6 Score=51.93 Aligned_cols=87 Identities=18% Similarity=0.062 Sum_probs=57.4
Q ss_pred HHHHHHcCCCceEeecchHHHHHHHHHh----cCCccc-ccchHHHHHHHCC---------------CCCCcHHHHHHHH
Q psy15183 1829 VLNEVLTDKNIVKVFHGADSDIKWLQKD----FGLYVV-GMFDTHQACKFLP---------------MPRQSLAYLLKHY 1888 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg~K~Di~~Lqr~----~GI~l~-nlfDT~lAayLL~---------------~~~~sLa~La~~y 1888 (1973)
.|.+++.+ -+-|+||+.+|..+|.+. +|..+. .++||+..++.+- ...++|..++++|
T Consensus 122 ~l~~~~~~--~~lVaHna~FD~~fL~~~l~~~~~~~~~~~~iDTl~Lar~l~~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 199 (239)
T PRK09146 122 ELLEALAG--KVVVVHYRRIERDFLDQALRNRIGEGIEFPVIDTMEIEARIQRKQAGGLWNRLKGKKPESIRLADSRLRY 199 (239)
T ss_pred HHHHHhCC--CEEEEECHHHHHHHHHHHHHHhcCCCCCCceechHHHHHHHcccccccccchhccCCCCCCCHHHHHHHc
Confidence 34444433 346899999999998653 233333 4789999776541 1345789988875
Q ss_pred cCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1889 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 1934 (1973)
Q Consensus 1889 Lg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~ 1934 (1973)
|++... .+-|..||.++..|+..+..++-
T Consensus 200 -gl~~~~----------------~H~Al~DA~ata~l~~~~~~~~~ 228 (239)
T PRK09146 200 -GLPAYS----------------PHHALTDAIATAELLQAQIAHHF 228 (239)
T ss_pred -CCCCCC----------------CCCcHHHHHHHHHHHHHHHHHHc
Confidence 543211 12277899999999988877764
No 171
>PRK05168 ribonuclease T; Provisional
Probab=92.49 E-value=1.5 Score=51.04 Aligned_cols=83 Identities=19% Similarity=0.129 Sum_probs=57.9
Q ss_pred CceEeecchHHHHHHHHH---hcCCcc-----cccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCH
Q psy15183 1838 NIVKVFHGADSDIKWLQK---DFGLYV-----VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 1909 (1973)
Q Consensus 1838 ~I~KV~Hg~K~Di~~Lqr---~~GI~l-----~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~ 1909 (1973)
+.+-|+||+.+|+..|.+ .+|+.. ..++||...++.+. +..+|..++++| |+...... .
T Consensus 114 ~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~iDt~~lar~~~-~~~~L~~l~~~~-gl~~~~~~-~---------- 180 (211)
T PRK05168 114 RAILVAHNAHFDLSFLMAAAERAGLKRNPFHPFSTFDTATLSGLAL-GQTVLAKACQAA-GIEFDNKE-A---------- 180 (211)
T ss_pred CceEEEeccHHhHHHHHHHHHHhCCCCCCCCCCcEeeHHHHHHHHc-CCCCHHHHHHHC-CCCCCCCC-C----------
Confidence 456799999999988753 355421 13689988776653 345899999875 65532111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1910 PAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1910 eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
+-|..||..+..|+..|..++.+.
T Consensus 181 ---H~Al~DA~ata~l~~~l~~~~~~~ 204 (211)
T PRK05168 181 ---HSALYDTEKTAELFCEIVNRWKRL 204 (211)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHc
Confidence 227789999999999999888754
No 172
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases.
Probab=92.42 E-value=1.3 Score=48.69 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=60.6
Q ss_pred HHHHHHHcCCCceeeecch-hHhHHHHHHH---hCCcc---cceeehhhhhhhcC-CCCccHHHHHHHHcCCCCCccccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGA-DSDIKWLQKD---FGLYV---VGMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTFQL 454 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~a-k~Dl~~L~r~---~Gi~~---~nlFDT~lAA~lLg-~~~~sLa~Lv~~ylgv~ldK~~q~ 454 (1973)
..|..++.+. + .|+|++ .+|+.+|.+. +|+.. ...+||+..++.+. ....+|..|++.| |+.....
T Consensus 72 ~~~~~~l~~~-~-~v~~n~~~fD~~~L~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~--- 145 (169)
T smart00479 72 EELLEFLKGK-I-LVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLARALNPGRKYSLKKLAERL-GLEVIGR--- 145 (169)
T ss_pred HHHHHHhcCC-E-EEEeCCHHHhHHHHHHHHHHhCCCCCcCCCeeEHHHHHHHHCCCCCCCHHHHHHHC-CCCCCCC---
Confidence 4666777664 3 366777 9999998653 34432 34789977776553 3368999999876 3332110
Q ss_pred ccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15183 455 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 489 (1973)
Q Consensus 455 sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~ 489 (1973)
.+.|..||..+..|+..+.+++.
T Consensus 146 ------------~H~A~~Da~~t~~l~~~~~~~~~ 168 (169)
T smart00479 146 ------------AHRALDDARATAKLFKKLVERLL 168 (169)
T ss_pred ------------CcCcHHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999877653
No 173
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=92.38 E-value=1.3 Score=55.19 Aligned_cols=136 Identities=13% Similarity=0.211 Sum_probs=81.4
Q ss_pred HhcCceeEEEeeeccCCccCCceeEEEEE---eC-Cc----eE--EEEcCC------c--------------hhhHHHHH
Q psy15183 1782 LKQQQEIAIDLEYHNYRSYQGYTCLMQIS---TR-DK----DY--IVDTLK------L--------------REDLEVLN 1831 (1973)
Q Consensus 1782 L~~a~~IavDlE~~~~~s~~g~v~LlQIS---t~-~~----~~--iiD~l~------l--------------~~~l~~L~ 1831 (1973)
+.....++||+|+.++++... ++|+|+ .. ++ .| +|.+-. + ...+..|.
T Consensus 43 ~~~~~fVvlDiETTGLdp~~d--rIIeIgAV~i~~~g~ive~f~tLVnP~~~~~p~~LHGIT~e~La~AP~f~eVl~el~ 120 (377)
T PRK05601 43 IEAAPFVAVSIQTSGIHPSTS--RLITIDAVTLTADGEEVEHFHAVLNPGEDPGPFHLHGLSAEEFAQGKRFSQILKPLD 120 (377)
T ss_pred CCCCCEEEEEEECCCCCCCCC--eEEEEEEEEEEcCCEEEEEEEEEECcCCCCCCccccCCCHHHHhcCCCHHHHHHHHH
Confidence 344678999999999887554 344443 11 11 11 232211 0 11234566
Q ss_pred HHHcCCCceEeecchHHHHHHHHHhc-------------------------------CCccc-ccchHHHHHHHCC--CC
Q psy15183 1832 EVLTDKNIVKVFHGADSDIKWLQKDF-------------------------------GLYVV-GMFDTHQACKFLP--MP 1877 (1973)
Q Consensus 1832 ~lLedp~I~KV~Hg~K~Di~~Lqr~~-------------------------------GI~l~-nlfDT~lAayLL~--~~ 1877 (1973)
+++.+ .+-|+||+.+|+.+|.+.+ ++... .++||+..++.+. ..
T Consensus 121 ~fL~g--~vLVaHNA~FD~~FL~~e~~r~~~~a~~~n~~~~r~~~~~~~~~rr~~~g~~p~p~~~iDTL~LARrl~p~l~ 198 (377)
T PRK05601 121 RLIDG--RTLILHNAPRTWGFIVSEAKRAMNAAARANRNRNRGNRRGGRGRRRQRVGHIPKPVVIVDTLATARRQGVALD 198 (377)
T ss_pred HHhCC--CEEEEECcHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccccCCCCCCCCEEEhHHHHHHHcCCCC
Confidence 67764 3469999999999886432 12222 3789999888875 56
Q ss_pred CCcHHHHHHHHcCCCCCc-c--cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1878 RQSLAYLLKHYCDVDSDK-T--FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 1929 (1973)
Q Consensus 1878 ~~sLa~La~~yLg~~l~K-~--~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L 1929 (1973)
++.|..|+++| |+..+. . .+.+. -+.. ..+..||..+-.||..+
T Consensus 199 ~~rL~~La~~l-Gi~~p~~~A~~~Ra~-----~p~~--~l~~~Da~ll~~l~~~~ 245 (377)
T PRK05601 199 DIRIRGVAHTL-GLDAPAAEASVERAQ-----VPHR--QLCREETLLVARLYFAL 245 (377)
T ss_pred CCCHHHHHHHh-CCCCCchhhhhhhhc-----CChh--hhhhHHHHHHHHHHHHh
Confidence 88999999985 655421 0 11111 1111 12456999998888776
No 174
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.
Probab=92.37 E-value=2 Score=49.15 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=53.6
Q ss_pred ceEeecchHHHHHHHHH---hcCCc---c--cccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHH
Q psy15183 1839 IVKVFHGADSDIKWLQK---DFGLY---V--VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 1910 (1973)
Q Consensus 1839 I~KV~Hg~K~Di~~Lqr---~~GI~---l--~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~e 1910 (1973)
.+-|+||+.+|+.+|.+ .+|+. . ...+||+..+..+. +..+|+.++++| |++.+.. +.
T Consensus 103 ~~lVaHna~FD~~fL~~~~~~~~~~~~~~~~~~~lDt~~la~~~~-~~~~L~~l~~~~-gi~~~~~-~~----------- 168 (189)
T cd06134 103 AILVGHNAHFDLGFLNAAVARCKIKRNPFHPFSTFDTATLAGLAY-GQTVLAKACQAA-GIEFDNK-EA----------- 168 (189)
T ss_pred CeEEEecchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHHHHHh-CCCcHHHHHHHC-CCCCCCC-CC-----------
Confidence 45799999999988863 35552 1 24689999887664 345899998875 6553211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1911 AIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1911 qi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
+-|..||..+..|+..|.++
T Consensus 169 --H~Al~DA~ata~lf~~l~~~ 188 (189)
T cd06134 169 --HSALYDTQKTAELFCKIVNR 188 (189)
T ss_pred --cChHHHHHHHHHHHHHHHHh
Confidence 22778999999999887653
No 175
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A ....
Probab=92.30 E-value=0.35 Score=53.41 Aligned_cols=141 Identities=16% Similarity=0.247 Sum_probs=73.9
Q ss_pred eEEEeeeccCCccCCceeEEEEEe--CCceE-EEEcCCch-hhHHHHH---HHHcCCCceEeecchHHHHHHHHHhc---
Q psy15183 1788 IAIDLEYHNYRSYQGYTCLMQIST--RDKDY-IVDTLKLR-EDLEVLN---EVLTDKNIVKVFHGADSDIKWLQKDF--- 1857 (1973)
Q Consensus 1788 IavDlE~~~~~s~~g~v~LlQISt--~~~~~-iiD~l~l~-~~l~~L~---~lLedp~I~KV~Hg~K~Di~~Lqr~~--- 1857 (1973)
+.+|+|+.++.+..+.+.++.+.. .++.. ++.....+ .....+. ..+.....+...|+..+|+..|++.+
T Consensus 1 l~~DIET~Gl~~~~~~i~liG~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~iv~yng~~FD~p~L~~~~~~~ 80 (164)
T PF13482_consen 1 LFFDIETTGLSPDNDTIYLIGVADFDDDEIITFIQWFAEDPDEEEIILEFFELLDEADNIVTYNGKNFDIPFLKRRAKRY 80 (164)
T ss_dssp --EEEEESS-GG-G---EEEEEEE-ETTTTE-EEEE-GGGHHHHHHHHH--HHHHTT--EEESSTTTTHHHHHHHHH-HH
T ss_pred CcEEecCCCCCCCCCCEEEEEEEEeCCCceEEeeHhhccCcHHHHHHHHHHHHHhcCCeEEEEeCcccCHHHHHHHHHHc
Confidence 468999998877677777777774 23222 33322211 1112222 45666666656666788999987654
Q ss_pred CCc-ccccchHHHHHHHCCCCCCcHHHHHHHHcCCCCC-cc---cccc----cCCC---CCCCHHHHHHHHHHHHHHHHH
Q psy15183 1858 GLY-VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSD-KT---FQLF----DWRH---RPLPEPAIQYARTDTHYLLYV 1925 (1973)
Q Consensus 1858 GI~-l~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~-K~---~q~s----dW~~---RPLs~eqi~YAa~DA~~LL~L 1925 (1973)
++. ..+.+|++..++-...++.+|+.+++. +|+.-. .. .+.. .|.. +.....++.|...|+..+.+|
T Consensus 81 ~~~~~~~~iDl~~~~~~~~~~~~~Lk~ve~~-lg~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~yN~~Dv~~~~~L 159 (164)
T PF13482_consen 81 GLPPPFNHIDLLKIIKKHFLESYSLKNVEKF-LGIERRDDDISGSESVKLYKEYLETGDPEALEEILEYNEDDVRATRRL 159 (164)
T ss_dssp HH--GGGEEEHHHHHT-TTSCCTT--SHHH------------HHHHHHHHHH---TTGGTS--HHHHHHHHHHHHHHHHH
T ss_pred CCCcccchhhHHHHHHhccCCCCCHHHHhhh-cccccccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222 345789999887655567799988777 665543 11 1111 1211 234577889999999999999
Q ss_pred HHHH
Q psy15183 1926 YDCM 1929 (1973)
Q Consensus 1926 yd~L 1929 (1973)
++.|
T Consensus 160 ~~~l 163 (164)
T PF13482_consen 160 YEWL 163 (164)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9986
No 176
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=92.14 E-value=1.8 Score=60.59 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=62.7
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCCcc--cccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCcccccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLF 1900 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l--~nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~s 1900 (1973)
..|.+++.+ . .-|+||+.+|..+|.+. .|+.. ...+||+..++.+. ..+++|.+|+++| |+.....
T Consensus 72 ~~l~~~l~~-~-~~VahN~~fD~~fL~~~~~~~g~~~~~~~~iDt~~l~~~~~p~~~~~~L~~l~~~~-gi~~~~~---- 144 (850)
T TIGR01407 72 QEIYDLLED-G-IFVAHNVHFDLNFLAKALKDCGYEPLPKPRIDTVELAQIFFPTEESYQLSELSEAL-GLTHENP---- 144 (850)
T ss_pred HHHHHHhCC-C-EEEEeCcHHHHHHHHHHHHHcCCCCCCCCeEeHHHHHHHhcCCCCCCCHHHHHHHC-CCCCCCC----
Confidence 355566654 3 46999999999998643 45542 34789998777663 4578999998885 6554211
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1901 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1901 dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
+-|..||.++..|+..|..++.+
T Consensus 145 ------------H~Al~DA~ata~l~~~l~~~~~~ 167 (850)
T TIGR01407 145 ------------HRADSDAQATAELLLLLFEKMEK 167 (850)
T ss_pred ------------CChHHHHHHHHHHHHHHHHHHHh
Confidence 22778999999988888877754
No 177
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=92.13 E-value=0.4 Score=53.93 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=55.3
Q ss_pred HHHHHHcCCCceEeecchHHHHHHHHHhcCCcccccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCC
Q psy15183 1829 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLP 1908 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs 1908 (1973)
.|..++ ++..+-|||++..|+.+|+ +-..-..+.||.+....-...+.+|..|+++|||..+.....
T Consensus 94 ~l~~li-~~~tILVGHsL~nDL~aL~--l~hp~~~viDTa~l~~~~~~r~~sLk~La~~~L~~~IQ~~~H---------- 160 (174)
T cd06143 94 KLRLLV-DLGCIFVGHGLAKDFRVIN--IQVPKEQVIDTVELFHLPGQRKLSLRFLAWYLLGEKIQSETH---------- 160 (174)
T ss_pred HHHHHc-CCCCEEEeccchhHHHHhc--CcCCCcceEEcHHhccCCCCCChhHHHHHHHHcCCcccCCCc----------
Confidence 344444 5566779999999999987 211123688997653332233569999999999988753211
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15183 1909 EPAIQYARTDTHYLLYVY 1926 (1973)
Q Consensus 1909 ~eqi~YAa~DA~~LL~Ly 1926 (1973)
-..+||.+++.||
T Consensus 161 -----dSvEDArAam~Ly 173 (174)
T cd06143 161 -----DSIEDARTALKLY 173 (174)
T ss_pred -----CcHHHHHHHHHHh
Confidence 1468999999998
No 178
>PRK09146 DNA polymerase III subunit epsilon; Validated
Probab=91.88 E-value=1.7 Score=51.64 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=79.0
Q ss_pred cCCeEEEEeeeccCCccCCcEEEEEEEe----CCc-------eEEEEccC-cc---------------------ccHHHH
Q psy15183 339 QQQEIAIDLEYHNYRSYQGYTCLMQIST----RDK-------DYIVDTLK-LR---------------------EDLEVL 385 (1973)
Q Consensus 339 ~~~~IavDtE~~~~~s~~g~l~LIQIst----~~~-------~~lID~l~-l~---------------------~~l~~L 385 (1973)
....+++|+|+.+.++..+.+ |+|+. .+. .++|.|-. +. +.+..|
T Consensus 46 ~~~~vviD~ETTGl~p~~d~I--ieIg~v~v~~~~i~~~~~~~~li~P~~~i~~~~~~IhGIt~e~l~~ap~~~evl~~l 123 (239)
T PRK09146 46 EVPFVALDFETTGLDAEQDAI--VSIGLVPFTLQRIRCRQARHWVVKPRRPLEEESVVIHGITHSELQDAPDLERILDEL 123 (239)
T ss_pred cCCEEEEEeECCCCCCCCCcE--EEEEEEEEECCeEeecceEEEEECCCCCCChhhhhhcCCCHHHHhCCCCHHHHHHHH
Confidence 345789999999887655543 33331 111 23555421 10 012344
Q ss_pred HHHHcCCCceeeecchhHhHHHHHHHh----CCcc-cceeehhhhhhhcC---------------CCCccHHHHHHHHcC
Q psy15183 386 NEVLTDKNIVKVFHGADSDIKWLQKDF----GLYV-VGMFDTHQACKFLP---------------MPRQSLAYLLKHYCD 445 (1973)
Q Consensus 386 ~~lL~dp~I~KV~H~ak~Dl~~L~r~~----Gi~~-~nlFDT~lAA~lLg---------------~~~~sLa~Lv~~ylg 445 (1973)
.+++.+ . +-|+||+.+|+.+|.+.+ |..+ ..++||+..++.+- ...++|.+++.+| |
T Consensus 124 ~~~~~~-~-~lVaHna~FD~~fL~~~l~~~~~~~~~~~~iDTl~Lar~l~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-g 200 (239)
T PRK09146 124 LEALAG-K-VVVVHYRRIERDFLDQALRNRIGEGIEFPVIDTMEIEARIQRKQAGGLWNRLKGKKPESIRLADSRLRY-G 200 (239)
T ss_pred HHHhCC-C-EEEEECHHHHHHHHHHHHHHhcCCCCCCceechHHHHHHHcccccccccchhccCCCCCCCHHHHHHHc-C
Confidence 444444 2 458999999999986643 3333 46789988765431 1346788888864 5
Q ss_pred CCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15183 446 VDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 489 (1973)
Q Consensus 446 v~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~ 489 (1973)
+.... .+-|..||..+..|+..+..++-
T Consensus 201 l~~~~----------------~H~Al~DA~ata~l~~~~~~~~~ 228 (239)
T PRK09146 201 LPAYS----------------PHHALTDAIATAELLQAQIAHHF 228 (239)
T ss_pred CCCCC----------------CCCcHHHHHHHHHHHHHHHHHHc
Confidence 43221 23388999999999888877664
No 179
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.
Probab=91.65 E-value=0.93 Score=48.77 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=54.5
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHHhC-----Ccccceeehhhhhhhc-C-CCCccHHHHHHHHcCCCCCcccccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFG-----LYVVGMFDTHQACKFL-P-MPRQSLAYLLKHYCDVDSDKTFQLF 455 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~G-----i~~~nlFDT~lAA~lL-g-~~~~sLa~Lv~~ylgv~ldK~~q~s 455 (1973)
..+..++.+ ...|+||+.+|..+|.+.+. ......+||+..+..+ + ...+++..+...+++...
T Consensus 71 ~~~~~~l~~--~~~v~~n~~fD~~~l~~~~~~~~~~~~~~~~iDt~~~~~~~~~~~~~~~l~~~~~~~~~~~~------- 141 (159)
T cd06127 71 PEFLEFLGG--RVLVAHNASFDLRFLNRELRRLGGPPLPNPWIDTLRLARRLLPGLRSHRLGLLLAERYGIPL------- 141 (159)
T ss_pred HHHHHHHCC--CEEEEeCcHhhHHHHHHHHHHhCCCCCCCCeeEHHHHHHHHcCCCCcCchHHHHHHHcCCCC-------
Confidence 466677776 45699999999999976554 3346688998665544 3 334677777545555432
Q ss_pred cCCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 456 DWRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 456 DW~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
...+-|..||..+..|+
T Consensus 142 ---------~~~H~Al~Da~~t~~l~ 158 (159)
T cd06127 142 ---------EGAHRALADALATAELL 158 (159)
T ss_pred ---------CCCCCcHHHHHHHHHHh
Confidence 22344889999988876
No 180
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.
Probab=91.54 E-value=1.3 Score=47.69 Aligned_cols=82 Identities=21% Similarity=0.206 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCCceEeecchHHHHHHHHHhcC-----CcccccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCccccc
Q psy15183 1827 LEVLNEVLTDKNIVKVFHGADSDIKWLQKDFG-----LYVVGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQL 1899 (1973)
Q Consensus 1827 l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~G-----I~l~nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~ 1899 (1973)
+..+..++.+ ...|+||+.+|..+|.+.+. ......+||+..+..+. ...+++..+...+++.... +
T Consensus 70 ~~~~~~~l~~--~~~v~~n~~fD~~~l~~~~~~~~~~~~~~~~iDt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~- 143 (159)
T cd06127 70 LPEFLEFLGG--RVLVAHNASFDLRFLNRELRRLGGPPLPNPWIDTLRLARRLLPGLRSHRLGLLLAERYGIPLE---G- 143 (159)
T ss_pred HHHHHHHHCC--CEEEEeCcHhhHHHHHHHHHHhCCCCCCCCeeEHHHHHHHHcCCCCcCchHHHHHHHcCCCCC---C-
Confidence 3456677766 45799999999999875443 22335789997665543 3456888875555554321 1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15183 1900 FDWRHRPLPEPAIQYARTDTHYLLYVY 1926 (1973)
Q Consensus 1900 sdW~~RPLs~eqi~YAa~DA~~LL~Ly 1926 (1973)
.+-|..||.++..||
T Consensus 144 ------------~H~Al~Da~~t~~l~ 158 (159)
T cd06127 144 ------------AHRALADALATAELL 158 (159)
T ss_pred ------------CCCcHHHHHHHHHHh
Confidence 123778998888776
No 181
>KOG2405|consensus
Probab=91.38 E-value=0.016 Score=69.87 Aligned_cols=140 Identities=25% Similarity=0.375 Sum_probs=93.4
Q ss_pred HHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCcccc--HHHHHHHHcCCCceeeecchhHhHHHHHHH
Q psy15183 334 VSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLRED--LEVLNEVLTDKNIVKVFHGADSDIKWLQKD 411 (1973)
Q Consensus 334 l~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~--l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~ 411 (1973)
+.+++..... +-.|....- ..|.+|.+|+++.-..|++|.+.++.. -..+.-+++|..|.|+.|++..-...+.+.
T Consensus 53 ~~~ik~qn~~-~~~e~a~~~-~~~~l~~~q~~~~~~~yl~~i~~~~~~~~~n~~q~~~~~k~i~~~~~d~~~~~~~~~~~ 130 (458)
T KOG2405|consen 53 ILHIKKQNVL-VAAEGANVC-RHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQ 130 (458)
T ss_pred HHhhHhhcCc-ccccCcccc-ccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHhhhHHHHHHHHHHhccc
Confidence 3444444433 333443322 357999999999888899998876432 246777999999999999999999999899
Q ss_pred hCCcccceeehhhhhhhcC-------CC--CccHHH-HHHHHcCCCC------Cccc-----ccccCCCCCCCchhHhHH
Q psy15183 412 FGLYVVGMFDTHQACKFLP-------MP--RQSLAY-LLKHYCDVDS------DKTF-----QLFDWRHRPLPEPAIQYA 470 (1973)
Q Consensus 412 ~Gi~~~nlFDT~lAA~lLg-------~~--~~sLa~-Lv~~ylgv~l------dK~~-----q~sDW~~RPLs~eql~YA 470 (1973)
|||..+++|||++|--+-. .+ ...++. |.+ .+.+.+ .|.. ...-|-.||.++.-+.-.
T Consensus 131 ~~i~~n~v~~~q~~d~~q~~~e~g~~~~n~~~~~q~sl~k-h~~~a~k~~~~l~~r~~~~~~n~e~~~i~~~~~s~~~~~ 209 (458)
T KOG2405|consen 131 YGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIK-HLQVAPKYLSFLEKRQKLIQENPEVWFIRPVSPSLLKIL 209 (458)
T ss_pred ceeeecchhhhhhhhhhhhcccccccCCccccchHHHHHH-HHHhcccHHHHHHHHHHHHhhCcceeEeecCchhHHHhh
Confidence 9999999999999654321 11 123443 444 333322 1111 113499999998888766
Q ss_pred HHhHHH
Q psy15183 471 RTDTHY 476 (1973)
Q Consensus 471 a~Da~~ 476 (1973)
+..+.|
T Consensus 210 ~~e~~~ 215 (458)
T KOG2405|consen 210 ALEATY 215 (458)
T ss_pred hhhhhh
Confidence 666665
No 182
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases.
Probab=91.36 E-value=2.1 Score=47.07 Aligned_cols=90 Identities=23% Similarity=0.204 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCceEeecch-HHHHHHHHHh---cCCccc---ccchHHHHHHHCC-CCCCcHHHHHHHHcCCCCCcccc
Q psy15183 1827 LEVLNEVLTDKNIVKVFHGA-DSDIKWLQKD---FGLYVV---GMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTFQ 1898 (1973)
Q Consensus 1827 l~~L~~lLedp~I~KV~Hg~-K~Di~~Lqr~---~GI~l~---nlfDT~lAayLL~-~~~~sLa~La~~yLg~~l~K~~q 1898 (1973)
+..|..++.+. + .|+||+ .+|+.+|.+. +|+... ..+||+..++.+. ....+|..|++.|.. +....
T Consensus 71 ~~~~~~~l~~~-~-~v~~n~~~fD~~~L~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~L~~l~~~~~~-~~~~~-- 145 (169)
T smart00479 71 LEELLEFLKGK-I-LVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLARALNPGRKYSLKKLAERLGL-EVIGR-- 145 (169)
T ss_pred HHHHHHHhcCC-E-EEEeCCHHHhHHHHHHHHHHhCCCCCcCCCeeEHHHHHHHHCCCCCCCHHHHHHHCCC-CCCCC--
Confidence 34666677653 3 466777 9999988743 344322 3689988777654 337799999988743 22110
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1899 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 1934 (1973)
Q Consensus 1899 ~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~ 1934 (1973)
.+.|..||..+..||..+.+++.
T Consensus 146 -------------~H~A~~Da~~t~~l~~~~~~~~~ 168 (169)
T smart00479 146 -------------AHRALDDARATAKLFKKLVERLL 168 (169)
T ss_pred -------------CcCcHHHHHHHHHHHHHHHHHhh
Confidence 24588999999999999977653
No 183
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show
Probab=91.25 E-value=1.8 Score=49.70 Aligned_cols=102 Identities=15% Similarity=0.277 Sum_probs=67.6
Q ss_pred HHHHHHHHcC--CCceeeecchh-HhHHHHHHH---hCCccc------------------------ceeehhhhhhh-cC
Q psy15183 382 LEVLNEVLTD--KNIVKVFHGAD-SDIKWLQKD---FGLYVV------------------------GMFDTHQACKF-LP 430 (1973)
Q Consensus 382 l~~L~~lL~d--p~I~KV~H~ak-~Dl~~L~r~---~Gi~~~------------------------nlFDT~lAA~l-Lg 430 (1973)
+..+..++.. |.+ -|+||.. +|+..|+.. +|+... ..+|++..++- ++
T Consensus 60 L~~F~~~i~~~dpdi-ivgyN~~~FD~pyL~~R~~~~gi~~~~~r~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~~~~~~ 138 (195)
T cd05780 60 IKRFIEIVKEKDPDV-IYTYNGDNFDFPYLKKRAEKLGIELDLGRDGSEIKIQRGGFNNASEIKGRIHVDLYPVARRTLN 138 (195)
T ss_pred HHHHHHHHHHcCCCE-EEecCCCCCcHHHHHHHHHHhCCCCccccCCCceeEeecceeeeeccCCeEEEeHHHHHHhhCC
Confidence 4455555555 775 4899975 799887643 454311 25787766553 45
Q ss_pred CCCccHHHHHHHHcCCCCCcc--ccccc-CCCCCCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 431 MPRQSLAYLLKHYCDVDSDKT--FQLFD-WRHRPLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 431 ~~~~sLa~Lv~~ylgv~ldK~--~q~sD-W~~RPLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
.++++|..+++++||.....- .+... |...+--...++|+..||..++.|.+.|
T Consensus 139 l~sy~L~~v~~~~Lg~~k~d~~~~~i~~~~~~~~~~~~l~~Y~~~D~~lt~~L~~~~ 195 (195)
T cd05780 139 LTRYTLERVYEELFGIEKEDVPGEEIAEAWDSGENLERLFRYSMEDAKYTYEIGKEF 195 (195)
T ss_pred CCcCcHHHHHHHHhCCCCCcCCHHHHHHHHhCCCchHHHHHHhHHHHHHHHHHHhhC
Confidence 778999999999999863211 12222 4443334567799999999999987653
No 184
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=91.14 E-value=2.3 Score=46.42 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=54.5
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHHh---CCc--ccceeehhhhhhhc-C-CCCccHHHHHHHHcCCCCCcccccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDF---GLY--VVGMFDTHQACKFL-P-MPRQSLAYLLKHYCDVDSDKTFQLF 455 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~---Gi~--~~nlFDT~lAA~lL-g-~~~~sLa~Lv~~ylgv~ldK~~q~s 455 (1973)
..|..++.+. .-|+||+.+|..+|.+.+ |+. ....+||+..++.+ + .+.++|..|++. +|+..+ .
T Consensus 69 ~~l~~~l~~~--~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~~~~~~~~~~~~~~~L~~l~~~-~g~~~~-~---- 140 (156)
T cd06130 69 PEIKPFLGGS--LVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTVRLARRVWPLLPNHKLNTVAEH-LGIELN-H---- 140 (156)
T ss_pred HHHHHHhCCC--EEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHHHHHHHHhccCCCCCHHHHHHH-cCCCcc-C----
Confidence 4566677763 458999999999986543 544 34578998766554 2 456899999986 465443 1
Q ss_pred cCCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 456 DWRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 456 DW~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
+=|..||..+..|+
T Consensus 141 ------------H~Al~Da~~ta~l~ 154 (156)
T cd06130 141 ------------HDALEDARACAEIL 154 (156)
T ss_pred ------------cCchHHHHHHHHHH
Confidence 22678888887775
No 185
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.68 E-value=2.9 Score=59.03 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=63.3
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCCcc--cccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCcccccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLF 1900 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l--~nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~s 1900 (1973)
..|..++.+ ..-|+||+.+|..+|.+. .|+.. ...+||+-.++.+- ..+++|..|++.| |+..+..
T Consensus 76 ~~l~~~l~~--~~~VaHN~~FD~~fL~~~~~~~g~~~~~~~~iDt~~la~~~~p~~~~~~L~~l~~~l-~i~~~~~---- 148 (928)
T PRK08074 76 PEIVELLEG--AYFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVELARILLPTAESYKLRDLSEEL-GLEHDQP---- 148 (928)
T ss_pred HHHHHHhCC--CeEEEEChHHHHHHHHHHHHHcCCCCCCCCeeeHHHHHHHhcCCCCCCCHHHHHHhC-CCCCCCC----
Confidence 356667754 345999999999998753 45442 24789988777653 4578999999875 6543211
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1901 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1901 dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
+-|-.||.++..|+..|.+++..
T Consensus 149 ------------H~Al~DA~ata~l~~~l~~~~~~ 171 (928)
T PRK08074 149 ------------HRADSDAEVTAELFLQLLNKLER 171 (928)
T ss_pred ------------CChHHHHHHHHHHHHHHHHHHHh
Confidence 22778999999999999888765
No 186
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins. Three prime repair exonuclease (TREX)1 and TREX2 are closely related DEDDh-type DnaQ-like 3'-5' exonucleases. They contain three conserved sequence motifs known as ExoI, II, and III, with a specific Hx(4)D conserved pattern at ExoIII. These motifs contain four conserved acidic residues that participate in coordination of divalent metal ions required for catalysis. Both proteins play a role in the metabolism and clearance of DNA. TREX1 is the major 3'-5' exonuclease activity detected in mammalian cells. Mutations in the human TREX1 gene can cause Aicardi-Goutieres syndrome (AGS), which is characterized by perturbed innate immunity and presents itself as a severe neurological disease. TREX1 degrades ssDNA generated by aberrant replication intermediates to prevent checkpoint activation and autoimmune disease. There are distinct structural differences between TREX1 and TRE
Probab=90.60 E-value=2.2 Score=48.23 Aligned_cols=79 Identities=24% Similarity=0.256 Sum_probs=53.7
Q ss_pred HHHHHHcC--CCceeeecch-hHhHHHHHHH---hCCcc---cceeehhhhhhhcCCCCccHHHHHHHHcCCCCCccccc
Q psy15183 384 VLNEVLTD--KNIVKVFHGA-DSDIKWLQKD---FGLYV---VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 454 (1973)
Q Consensus 384 ~L~~lL~d--p~I~KV~H~a-k~Dl~~L~r~---~Gi~~---~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~ 454 (1973)
.|.+++.. ...+-|+||+ .+|+..|.+. +|+.. ...+||+..++.+.. +|+.|+.+++|+.....
T Consensus 87 ~l~~f~~~~~~~~~lVaHNa~~FD~~fL~~~~~r~~~~~~~~~~~iDtl~l~r~~~~---~L~~l~~~~~~~~~~~~--- 160 (177)
T cd06136 87 LIKLFLRRQPKPICLVAHNGNRFDFPILRSELERLGTKLPDDILCVDSLPAFRELDQ---SLGSLYKRLFGQEPKNS--- 160 (177)
T ss_pred HHHHHHHhcCCCCEEEEcCCcccCHHHHHHHHHHcCCCCCCCCEEEEeHHHHhhhHh---hHHHHHHHHhCCCcccc---
Confidence 45555542 2346799998 8999998654 34442 234799877776543 89999998888765332
Q ss_pred ccCCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 455 FDWRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 455 sDW~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
+-|..||..+..++
T Consensus 161 -------------H~A~~Da~at~~v~ 174 (177)
T cd06136 161 -------------HTAEGDVLALLKCA 174 (177)
T ss_pred -------------cchHHHHHHHHHHH
Confidence 33788998887765
No 187
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=90.55 E-value=0.45 Score=62.44 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHH
Q psy15183 538 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 609 (1973)
Q Consensus 538 ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~ 609 (1973)
....|.+|..||-++|++.|.||.-|++|..|..+|+.+|.+.+++....+....-+.+++..+++.|.+..
T Consensus 517 ~~~lf~~lr~~r~~~a~~~~vp~~vif~d~tl~~ma~~~p~~~~~~~~i~gvg~~k~~~yg~~fl~~i~~~~ 588 (590)
T COG0514 517 DRDLFERLRALRKEIADEENVPPYVVFSDATLKEMAEKQPQSADELLSINGVGEAKLERYGQAFLAVIQAHA 588 (590)
T ss_pred cHHHHHHHHHHHHHhhhhhcCCceEEecchHHHHHHHHcCCCHHHHHHhcCCcccchhhccHHHHHHHHHhc
Confidence 445899999999999999999999999999999999999999999999998888888899999999987643
No 188
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.18 E-value=3.4 Score=58.36 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=86.6
Q ss_pred CeEEEEeeeccCCccCCcEEEEEEEe----CCc-----eEEEEccC-cc---------------------ccHHHHHHHH
Q psy15183 341 QEIAIDLEYHNYRSYQGYTCLMQIST----RDK-----DYIVDTLK-LR---------------------EDLEVLNEVL 389 (1973)
Q Consensus 341 ~~IavDtE~~~~~s~~g~l~LIQIst----~~~-----~~lID~l~-l~---------------------~~l~~L~~lL 389 (1973)
..++||+|+++..+..+ -.+|||+. .+. ..+|.|-. +. +.+..|..++
T Consensus 4 ~~vvvD~ETTG~~p~~~-d~IIeigav~v~~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~~~l~~ap~f~ev~~~l~~~l 82 (928)
T PRK08074 4 RFVVVDLETTGNSPKKG-DKIIQIAAVVVEDGEILERFSSFVNPERPIPPFITELTGISEEMVKQAPLFEDVAPEIVELL 82 (928)
T ss_pred CEEEEEEeCCCCCCCCC-CcEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhcCCCCHHHHhcCCCHHHHHHHHHHHh
Confidence 57899999988654332 24566663 221 12444421 10 1123566677
Q ss_pred cCCCceeeecchhHhHHHHHHH---hCCcc--cceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccCCCCCC
Q psy15183 390 TDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 462 (1973)
Q Consensus 390 ~dp~I~KV~H~ak~Dl~~L~r~---~Gi~~--~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPL 462 (1973)
.+. .-|+||+.+|..+|.+. .|+.. ...+||+-.++.+- ..+++|.+|++.+ |+..+.
T Consensus 83 ~~~--~~VaHN~~FD~~fL~~~~~~~g~~~~~~~~iDt~~la~~~~p~~~~~~L~~l~~~l-~i~~~~------------ 147 (928)
T PRK08074 83 EGA--YFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVELARILLPTAESYKLRDLSEEL-GLEHDQ------------ 147 (928)
T ss_pred CCC--eEEEEChHHHHHHHHHHHHHcCCCCCCCCeeeHHHHHHHhcCCCCCCCHHHHHHhC-CCCCCC------------
Confidence 653 45999999999999654 35442 46789987776653 4568999999874 654332
Q ss_pred CchhHhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 463 PEPAIQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 463 s~eql~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
.+=|..||..+..|+..|..++.+..
T Consensus 148 ----~H~Al~DA~ata~l~~~l~~~~~~l~ 173 (928)
T PRK08074 148 ----PHRADSDAEVTAELFLQLLNKLERLP 173 (928)
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 13388999999999999999887655
No 189
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins. Three prime repair exonuclease (TREX)1 and TREX2 are closely related DEDDh-type DnaQ-like 3'-5' exonucleases. They contain three conserved sequence motifs known as ExoI, II, and III, with a specific Hx(4)D conserved pattern at ExoIII. These motifs contain four conserved acidic residues that participate in coordination of divalent metal ions required for catalysis. Both proteins play a role in the metabolism and clearance of DNA. TREX1 is the major 3'-5' exonuclease activity detected in mammalian cells. Mutations in the human TREX1 gene can cause Aicardi-Goutieres syndrome (AGS), which is characterized by perturbed innate immunity and presents itself as a severe neurological disease. TREX1 degrades ssDNA generated by aberrant replication intermediates to prevent checkpoint activation and autoimmune disease. There are distinct structural differences between TREX1 and TRE
Probab=89.09 E-value=3.4 Score=46.72 Aligned_cols=81 Identities=23% Similarity=0.217 Sum_probs=54.9
Q ss_pred HHHHHHHcC--CCceEeecch-HHHHHHHHHh---cCCccc---ccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccc
Q psy15183 1828 EVLNEVLTD--KNIVKVFHGA-DSDIKWLQKD---FGLYVV---GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 1898 (1973)
Q Consensus 1828 ~~L~~lLed--p~I~KV~Hg~-K~Di~~Lqr~---~GI~l~---nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q 1898 (1973)
..|..++.. ...+-|+||+ .+|+..|.+. +|+... ..+||+..++.+.. +|+.|+++++|+.....
T Consensus 86 ~~l~~f~~~~~~~~~lVaHNa~~FD~~fL~~~~~r~~~~~~~~~~~iDtl~l~r~~~~---~L~~l~~~~~~~~~~~~-- 160 (177)
T cd06136 86 NLIKLFLRRQPKPICLVAHNGNRFDFPILRSELERLGTKLPDDILCVDSLPAFRELDQ---SLGSLYKRLFGQEPKNS-- 160 (177)
T ss_pred HHHHHHHHhcCCCCEEEEcCCcccCHHHHHHHHHHcCCCCCCCCEEEEeHHHHhhhHh---hHHHHHHHHhCCCcccc--
Confidence 345555543 3456799998 8999988543 455432 24699988877654 89999999888664321
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15183 1899 LFDWRHRPLPEPAIQYARTDTHYLLYVYD 1927 (1973)
Q Consensus 1899 ~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd 1927 (1973)
+-|..||..+..++-
T Consensus 161 --------------H~A~~Da~at~~v~~ 175 (177)
T cd06136 161 --------------HTAEGDVLALLKCAL 175 (177)
T ss_pred --------------cchHHHHHHHHHHHh
Confidence 237789888877653
No 190
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=88.82 E-value=5.4 Score=49.23 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHH---hCCcc--cceeehhhhhhh-c-CCCCccHHHHHHHHcCCCCCcccccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKF-L-PMPRQSLAYLLKHYCDVDSDKTFQLF 455 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~---~Gi~~--~nlFDT~lAA~l-L-g~~~~sLa~Lv~~ylgv~ldK~~q~s 455 (1973)
..|.+++.+ -+-|+||+.+|+.+|.+. +|+.. ...+||+..++- . +...++|..|+.+| |+..+
T Consensus 72 ~~~~~fl~~--~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~idT~~lar~l~~~~~~~~L~~L~~~~-gi~~~------ 142 (309)
T PRK06195 72 EKIKHYFNN--NLVIAHNASFDISVLRKTLELYNIPMPSFEYICTMKLAKNFYSNIDNARLNTVNNFL-GYEFK------ 142 (309)
T ss_pred HHHHHHhCC--CEEEEECcHHHHHHHHHHHHHhCCCCCCCCEEEHHHHHHHHcCCCCcCCHHHHHHHc-CCCCc------
Confidence 345566654 345899999999988654 34443 357899776554 3 35678999999885 54321
Q ss_pred cCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHh
Q psy15183 456 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 491 (1973)
Q Consensus 456 DW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~ 491 (1973)
-+-|..||..+..|+..|..++...
T Consensus 143 -----------~H~Al~DA~ata~l~~~l~~~~~~~ 167 (309)
T PRK06195 143 -----------HHDALADAMACSNILLNISKELNSK 167 (309)
T ss_pred -----------ccCCHHHHHHHHHHHHHHHHHhccC
Confidence 1337899999999988887776543
No 191
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=88.66 E-value=5.4 Score=43.53 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=53.8
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCCccc--ccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCcccccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYVV--GMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLF 1900 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l~--nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~s 1900 (1973)
..|..++.+ ..-|+||+.+|..+|.+. +|+... ..+||+..+..+- ....+|+.|++.| |+...
T Consensus 69 ~~l~~~l~~--~~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~~~~~~~~~~~~~~~L~~l~~~~-g~~~~------ 139 (156)
T cd06130 69 PEIKPFLGG--SLVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTVRLARRVWPLLPNHKLNTVAEHL-GIELN------ 139 (156)
T ss_pred HHHHHHhCC--CEEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHHHHHHHHhccCCCCCHHHHHHHc-CCCcc------
Confidence 456667765 356999999999998643 455532 4789987665542 4567999999874 65433
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15183 1901 DWRHRPLPEPAIQYARTDTHYLLYVY 1926 (1973)
Q Consensus 1901 dW~~RPLs~eqi~YAa~DA~~LL~Ly 1926 (1973)
. +-|..||..+..|+
T Consensus 140 --~---------H~Al~Da~~ta~l~ 154 (156)
T cd06130 140 --H---------HDALEDARACAEIL 154 (156)
T ss_pred --C---------cCchHHHHHHHHHH
Confidence 1 12667888887776
No 192
>PRK09182 DNA polymerase III subunit epsilon; Validated
Probab=88.53 E-value=5.5 Score=48.83 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHHhCCc-ccceeehhhhhhh--cCCCCccHHHHHHHHcCCCCCcccccccCCC
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY-VVGMFDTHQACKF--LPMPRQSLAYLLKHYCDVDSDKTFQLFDWRH 459 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~-~~nlFDT~lAA~l--Lg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~ 459 (1973)
..+..++.... +-|+||+.+|+.+|.+.+.-. .....+|+..... .+.++++|.+|+.+| |.. ..
T Consensus 112 ~~l~~fl~~~~-vlVAHNA~FD~~fL~~~~~~~~~~~~~ct~~~i~~~~~~~~~~kL~~La~~~-g~~----~~------ 179 (294)
T PRK09182 112 AAVDALIAPAD-LIIAHNAGFDRPFLERFSPVFATKPWACSVSEIDWSARGFEGTKLGYLAGQA-GFF----HE------ 179 (294)
T ss_pred HHHHHHhcCCC-EEEEeCHHHHHHHHHHHHHhccCCcccccHHHHhhccccCCCCCHHHHHHHc-CCC----CC------
Confidence 45666776643 458999999999996543211 1234455543222 345678999999875 321 01
Q ss_pred CCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q psy15183 460 RPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSR 507 (1973)
Q Consensus 460 RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g~~~~~~l~~v~~e~e 507 (1973)
.+=|..||.++..|+..+. ...|.. -+..++..+.
T Consensus 180 -------aHrAl~Da~Ata~ll~~~l---~~~~~~---~l~~Ll~~~~ 214 (294)
T PRK09182 180 -------GHRAVDDCQALLELLARPL---PETGQP---PLAELLEASR 214 (294)
T ss_pred -------CcChHHHHHHHHHHHHHHH---hhcCCc---CHHHHHHHhc
Confidence 1238899999988777543 333321 2455555543
No 193
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=88.12 E-value=1.9 Score=52.98 Aligned_cols=87 Identities=10% Similarity=0.034 Sum_probs=60.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhcCC--CCceEEEEeeCCCceEEEEeecCEEccCCcE
Q psy15183 966 IVLTEPFLNPNYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNGW--EGQSGVIISCGYQCTHVIPVINGCIDASKAK 1041 (1973)
Q Consensus 966 VlltEp~~~p~~~Re~l~ElLFE~~~vpav~~--~~~sllS~ya~G~--g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~ 1041 (1973)
.++.-..+-...+++.+.+.+.+..|++-=.+ ..++.+++.|.-. ...+++|||+|.++|.++-+.+|.+. ...
T Consensus 74 ~~vaTsa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~ 151 (300)
T TIGR03706 74 RAVATAALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGV 151 (300)
T ss_pred EEEEcHHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEE
Confidence 34444444455678888888888888653222 2445665555422 12457999999999999999888776 566
Q ss_pred EeeccHHHHHHHH
Q psy15183 1042 RIDLGGFSVIHHL 1054 (1973)
Q Consensus 1042 rl~vGG~~lt~~L 1054 (1973)
.+|+|.-.+++.+
T Consensus 152 Sl~lG~vrl~e~f 164 (300)
T TIGR03706 152 SLPLGCVRLTEQF 164 (300)
T ss_pred EEccceEEhHHhh
Confidence 8999988777654
No 194
>PRK10854 exopolyphosphatase; Provisional
Probab=87.47 E-value=3.9 Score=54.02 Aligned_cols=152 Identities=10% Similarity=0.034 Sum_probs=91.0
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHHHHHH
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFDY 949 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i~~~ 949 (1973)
.-|||+||.++|.-.+-.. +. .+ ..+...+.. +-.|+.. +..|.+ +-+.+++.++-
T Consensus 13 ~A~IDIGSNSirL~I~e~~-~~-~~-~~i~~~k~~-------vrLg~g~-------------~~~g~L-s~e~~~r~~~~ 68 (513)
T PRK10854 13 FAAVDLGSNSFHMVIARVV-DG-AM-QIIGRLKQR-------VHLADGL-------------DSDNML-SEEAMERGLNC 68 (513)
T ss_pred EEEEEeccchheEEEEEec-CC-cE-EEeeeeeEE-------EECCCCc-------------CCCCCc-CHHHHHHHHHH
Confidence 5799999999999887421 11 10 111111100 1123221 123333 45666666664
Q ss_pred HH--h----hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhcCCC---CceEEEE
Q psy15183 950 AF--S----HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNGWE---GQSGVII 1018 (1973)
Q Consensus 950 if--~----~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~--~~~sllS~ya~G~g---~~tgLVV 1018 (1973)
+- . ..++ +.-.++.-..+-...++..+.+-+.+..|++==.+ -.++.+++.|.-.+ ...++||
T Consensus 69 L~~F~~~~~~~~v------~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvv 142 (513)
T PRK10854 69 LSLFAERLQGFSP------ANVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVI 142 (513)
T ss_pred HHHHHHHHHhCCC------CeEEEEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEE
Confidence 42 2 2232 22344444555566678888888888888774333 35566676665431 2358999
Q ss_pred eeCCCceEEEEeecCEEccCCcEEeeccHHHHHHH
Q psy15183 1019 SCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHH 1053 (1973)
Q Consensus 1019 DiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~ 1053 (1973)
|||.++|.++-+-+|.+.. ...+++|.-.+++-
T Consensus 143 DIGGGStEl~~~~~~~~~~--~~S~~lG~vrl~e~ 175 (513)
T PRK10854 143 DIGGGSTELVIGENFEPIL--VESRRMGCVSFAQL 175 (513)
T ss_pred EeCCCeEEEEEecCCCeeE--eEEEecceeeHHhh
Confidence 9999999999999987663 44569998877763
No 195
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=87.37 E-value=2.5 Score=61.26 Aligned_cols=137 Identities=21% Similarity=0.302 Sum_probs=88.9
Q ss_pred HHhcCCeEEEEeeeccCCccCCcEEEEEEEe---CCc------eEEEEccC-c---------------------cccHHH
Q psy15183 336 ELKQQQEIAIDLEYHNYRSYQGYTCLMQIST---RDK------DYIVDTLK-L---------------------REDLEV 384 (1973)
Q Consensus 336 ~L~~~~~IavDtE~~~~~s~~g~l~LIQIst---~~~------~~lID~l~-l---------------------~~~l~~ 384 (1973)
.+.....+.+|+|+.+..+....+ ++|+. ..+ ..+|.|-. + .+.+..
T Consensus 415 ~L~~~~~VVfDLETTGL~~~~deI--IEIgAV~V~~G~iie~F~~~V~P~~~I~~~~~~LTGIT~e~L~~aps~~EaL~~ 492 (1437)
T PRK00448 415 DLKDATYVVFDVETTGLSAVYDEI--IEIGAVKIKNGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPK 492 (1437)
T ss_pred hhccCcEEEEEhhhcCCCCchhhh--heeeeEEEeCCeEeeeEEEEECCCCCCCHHHHHHhCCCHHHHcCCCCHHHHHHH
Confidence 345567999999999877554433 23321 111 22333321 0 011233
Q ss_pred HHHHHcCCCceeeecchhHhHHHHH---HHhCCc--ccceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccC
Q psy15183 385 LNEVLTDKNIVKVFHGADSDIKWLQ---KDFGLY--VVGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDW 457 (1973)
Q Consensus 385 L~~lL~dp~I~KV~H~ak~Dl~~L~---r~~Gi~--~~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW 457 (1973)
+.+++.+ ...|.|++.+|+..|. +.+|+. ....+||+-.++.+. ...++|..|+++ +|+.....
T Consensus 493 f~~figg--~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~-lGL~~~~~------ 563 (1437)
T PRK00448 493 FKEFCGD--SILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKK-FGVELEHH------ 563 (1437)
T ss_pred HHHHhCC--CEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHH-cCCCCCCC------
Confidence 4444443 4569999999998764 345663 346789988887664 456899999987 46654321
Q ss_pred CCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 458 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 458 ~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
+-|..||..+..|+..|..++.+.|.
T Consensus 564 ----------HrAl~DA~aTa~lf~~ll~~l~~~gi 589 (1437)
T PRK00448 564 ----------HRADYDAEATAYLLIKFLKDLKEKGI 589 (1437)
T ss_pred ----------cChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44889999999999999999998764
No 196
>PRK07247 DNA polymerase III subunit epsilon; Validated
Probab=87.02 E-value=4.3 Score=46.86 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCceeeecchh-HhHHHHHHHhCCcccc--eeehh---hhhhh--c-CCCCccHHHHHHHHcCCCCCcccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGAD-SDIKWLQKDFGLYVVG--MFDTH---QACKF--L-PMPRQSLAYLLKHYCDVDSDKTFQ 453 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak-~Dl~~L~r~~Gi~~~n--lFDT~---lAA~l--L-g~~~~sLa~Lv~~ylgv~ldK~~q 453 (1973)
..|.+++.+.. .|+||+. +|+.+| +..|+.+.+ .+||. .+.+. + +..+++|..|+++ +|+...
T Consensus 76 ~~f~~f~~~~~--lVaHNa~~fD~~fL-~~~g~~~~~~~~idt~~~~~~~~~~~~~~~~~~~L~~La~~-~gi~~~---- 147 (195)
T PRK07247 76 AAFKEFVGELP--LIGYNAQKSDLPIL-AENGLDLSDQYQVDLYDEAFERRSSDLNGIANLKLQTVADF-LGIKGR---- 147 (195)
T ss_pred HHHHHHHCCCe--EEEEeCcHhHHHHH-HHcCCCcCCCceeehHHHHHHhhccccCCCCCCCHHHHHHh-cCCCCC----
Confidence 45666776543 5899995 899999 566766543 24553 22222 1 3456899999886 465421
Q ss_pred cccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHH
Q psy15183 454 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 488 (1973)
Q Consensus 454 ~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L 488 (1973)
. +=|..||..+..|+..|...-
T Consensus 148 ----~---------HrAl~DA~~ta~v~~~ll~~~ 169 (195)
T PRK07247 148 ----G---------HNSLEDARMTARVYESFLESD 169 (195)
T ss_pred ----C---------cCCHHHHHHHHHHHHHHHhhc
Confidence 1 227789999999988774433
No 197
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=86.98 E-value=11 Score=46.48 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCCccc--ccchHHHHHHHC--CCCCCcHHHHHHHHcCCCCCcccccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYVV--GMFDTHQACKFL--PMPRQSLAYLLKHYCDVDSDKTFQLF 1900 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l~--nlfDT~lAayLL--~~~~~sLa~La~~yLg~~l~K~~q~s 1900 (1973)
..|.+++.+ -+-|+||+.+|+.+|.+. +|+... ..+||+..++.+ +..+++|..|+++| |+.. +.
T Consensus 72 ~~~~~fl~~--~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~idT~~lar~l~~~~~~~~L~~L~~~~-gi~~----~~- 143 (309)
T PRK06195 72 EKIKHYFNN--NLVIAHNASFDISVLRKTLELYNIPMPSFEYICTMKLAKNFYSNIDNARLNTVNNFL-GYEF----KH- 143 (309)
T ss_pred HHHHHHhCC--CEEEEECcHHHHHHHHHHHHHhCCCCCCCCEEEHHHHHHHHcCCCCcCCHHHHHHHc-CCCC----cc-
Confidence 345556643 456999999999888543 455432 478998766654 24678999999886 5432 10
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1901 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1901 dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
+-|..||..+..|+..|..++..
T Consensus 144 ------------H~Al~DA~ata~l~~~l~~~~~~ 166 (309)
T PRK06195 144 ------------HDALADAMACSNILLNISKELNS 166 (309)
T ss_pred ------------cCCHHHHHHHHHHHHHHHHHhcc
Confidence 23778999999999888877754
No 198
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=86.39 E-value=5.7 Score=52.24 Aligned_cols=88 Identities=10% Similarity=0.079 Sum_probs=62.5
Q ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhcCCC---CceEEEEeeCCCceEEEEeecCEEccCC
Q psy15183 965 PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVINGCIDASK 1039 (1973)
Q Consensus 965 pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~--~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~dG~vl~~s 1039 (1973)
-.++.-..+-...+++.+.+-+.+..|++==.+ -.++-++++|.-.+ ..+++|||||.++|.++-+-+|.+. .
T Consensus 79 i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~ 156 (496)
T PRK11031 79 IRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--S 156 (496)
T ss_pred EEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--e
Confidence 344455555566778888888889888763222 35566666655321 2458999999999999999898876 5
Q ss_pred cEEeeccHHHHHHHH
Q psy15183 1040 AKRIDLGGFSVIHHL 1054 (1973)
Q Consensus 1040 i~rl~vGG~~lt~~L 1054 (1973)
...+|+|.-.+++.+
T Consensus 157 ~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 157 LFSLSMGCVTWLERY 171 (496)
T ss_pred eeEEeccchHHHHHh
Confidence 668999988766543
No 199
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=85.53 E-value=5.1 Score=58.34 Aligned_cols=89 Identities=22% Similarity=0.331 Sum_probs=64.0
Q ss_pred HHHHHHcCCCceEeecchHHHHHHHH---HhcCCc-c-cccchHHHHHHHCC--CCCCcHHHHHHHHcCCCCCccccccc
Q psy15183 1829 VLNEVLTDKNIVKVFHGADSDIKWLQ---KDFGLY-V-VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFD 1901 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg~K~Di~~Lq---r~~GI~-l-~nlfDT~lAayLL~--~~~~sLa~La~~yLg~~l~K~~q~sd 1901 (1973)
.+..++. ....|+||+.+|..+|. +.+|+. + ...+||+-.++.+. ...++|..|+++| |+.....
T Consensus 492 ~f~~fig--g~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~l-GL~~~~~----- 563 (1437)
T PRK00448 492 KFKEFCG--DSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKF-GVELEHH----- 563 (1437)
T ss_pred HHHHHhC--CCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHc-CCCCCCC-----
Confidence 3444443 35679999999998764 245663 2 34789998888775 4577999999875 6554321
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1902 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1902 W~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
+-|-.||.++..|+..|..++.+.
T Consensus 564 -----------HrAl~DA~aTa~lf~~ll~~l~~~ 587 (1437)
T PRK00448 564 -----------HRADYDAEATAYLLIKFLKDLKEK 587 (1437)
T ss_pred -----------cChHHHHHHHHHHHHHHHHHHHHc
Confidence 337889999999999999998755
No 200
>PRK07247 DNA polymerase III subunit epsilon; Validated
Probab=85.48 E-value=10 Score=43.84 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCCceEeecchH-HHHHHHHHhcCCcccc--cchHH---HHHHH--C-CCCCCcHHHHHHHHcCCCCCccc
Q psy15183 1827 LEVLNEVLTDKNIVKVFHGAD-SDIKWLQKDFGLYVVG--MFDTH---QACKF--L-PMPRQSLAYLLKHYCDVDSDKTF 1897 (1973)
Q Consensus 1827 l~~L~~lLedp~I~KV~Hg~K-~Di~~Lqr~~GI~l~n--lfDT~---lAayL--L-~~~~~sLa~La~~yLg~~l~K~~ 1897 (1973)
+..|..++.+. ..|+||+. +|+.+|. ..|+.+.+ .+||. .+.+. + +..+++|..|+++| |+...
T Consensus 75 l~~f~~f~~~~--~lVaHNa~~fD~~fL~-~~g~~~~~~~~idt~~~~~~~~~~~~~~~~~~~L~~La~~~-gi~~~--- 147 (195)
T PRK07247 75 LAAFKEFVGEL--PLIGYNAQKSDLPILA-ENGLDLSDQYQVDLYDEAFERRSSDLNGIANLKLQTVADFL-GIKGR--- 147 (195)
T ss_pred HHHHHHHHCCC--eEEEEeCcHhHHHHHH-HcCCCcCCCceeehHHHHHHhhccccCCCCCCCHHHHHHhc-CCCCC---
Confidence 34566677553 35999995 8999998 46766543 24543 22222 1 24568999998864 65421
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1898 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 1934 (1973)
Q Consensus 1898 q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~ 1934 (1973)
. +-|..||.++..||..|...-.
T Consensus 148 -----~---------HrAl~DA~~ta~v~~~ll~~~~ 170 (195)
T PRK07247 148 -----G---------HNSLEDARMTARVYESFLESDQ 170 (195)
T ss_pred -----C---------cCCHHHHHHHHHHHHHHHhhcc
Confidence 1 1267899999999988865543
No 201
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=85.11 E-value=8.9 Score=44.68 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=77.9
Q ss_pred CceeEEEeeeccCCc------cCCceeEEEEEeCCce-E-EEEcCCch---hhHHHHHHHHc--CCCceEeecch-HHHH
Q psy15183 1785 QQEIAIDLEYHNYRS------YQGYTCLMQISTRDKD-Y-IVDTLKLR---EDLEVLNEVLT--DKNIVKVFHGA-DSDI 1850 (1973)
Q Consensus 1785 a~~IavDlE~~~~~s------~~g~v~LlQISt~~~~-~-iiD~l~l~---~~l~~L~~lLe--dp~I~KV~Hg~-K~Di 1850 (1973)
-+.++||+|..+... ..+.-..+|||..... + .+...... ..+..+..++. ||.| -||||. .+|+
T Consensus 9 lkilsfDIE~~~~~~~~~p~p~~~~d~Ii~Is~~~~~~~~~~~~~~~~~E~~lL~~f~~~i~~~dPdi-i~g~N~~~FD~ 87 (207)
T cd05785 9 LRRLQLDIETYSLPGFFFSNPDRGDDRIIIVALRDNRGWEEVLHAEDAAEKELLEELVAIIRERDPDV-IEGHNIFRFDL 87 (207)
T ss_pred ceEEEEEEEecCCCCccCCCCCCCCCeEEEEecccCCCceeeeccCCCCHHHHHHHHHHHHHHhCCCE-EeccCCcccCH
Confidence 357899999854321 1233467888853211 2 11111112 23344444443 4775 479998 6788
Q ss_pred HHHHH---hcCCccc--------------------------------ccchHHHHHHHC-----CCCCCcHHHHHHHH--
Q psy15183 1851 KWLQK---DFGLYVV--------------------------------GMFDTHQACKFL-----PMPRQSLAYLLKHY-- 1888 (1973)
Q Consensus 1851 ~~Lqr---~~GI~l~--------------------------------nlfDT~lAayLL-----~~~~~sLa~La~~y-- 1888 (1973)
..|.+ .+|+... -++|++.+..-. ...+++|..+++.+
T Consensus 88 pyl~~R~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~Gr~~iDl~~~~~~~~~~~~~l~sysL~~Va~~~g~ 167 (207)
T cd05785 88 PYLRRRCRRHGVPLAIGRDGSIPRQRPSRFRFAERLIDYPRYDIPGRHVIDTYFLVQLFDVSSRDLPSYGLKAVAKHFGL 167 (207)
T ss_pred HHHHHHHHHhCCCcccccCCCcceEeeccccccccccccceEEecCEEEEEcHHHHHhhcccccCCCCCCHHHHHHHhcc
Confidence 77642 3454431 136888866532 34577999999987
Q ss_pred cCCC-CC-cccccc-cCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15183 1889 CDVD-SD-KTFQLF-DWRHRPLPEPAIQYARTDTHYLLYVY 1926 (1973)
Q Consensus 1889 Lg~~-l~-K~~q~s-dW~~RPLs~eqi~YAa~DA~~LL~Ly 1926 (1973)
++.. .+ ...+.. -|... ....++|+..|+..++.|+
T Consensus 168 ~~~~k~d~~~~~I~~l~~~~--~~~l~~Y~~~D~~~t~~l~ 206 (207)
T cd05785 168 ASPDRTYIDGRQIAEVWRSD--PARLLAYALDDVRETEGLA 206 (207)
T ss_pred cCCCcCCCCHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhh
Confidence 2321 11 011111 25444 2667799999999998875
No 202
>PF09281 Taq-exonuc: Taq polymerase, exonuclease; InterPro: IPR015361 This domain is found in prokaryotic Taq DNA polymerase (thermostable), where it assumes a ribonuclease H-like motif. The domain confers 5'-3' exonuclease activity to the polymerase []. ; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 4DF4_A 3T3F_A 1QSY_A 3OJS_A 3PO5_A 3OJU_A 1QTM_A 1QSS_A 3PY8_A 4DFJ_A ....
Probab=85.03 E-value=2.9 Score=44.42 Aligned_cols=72 Identities=14% Similarity=0.005 Sum_probs=46.6
Q ss_pred ecchHHHHHHHHHhcCCcccccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHH
Q psy15183 1843 FHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYL 1922 (1973)
Q Consensus 1843 ~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~L 1922 (1973)
+-++|....+++ .-|+.+..--|.|+.+|||+..+.....++++|++ .+|... |+..|...
T Consensus 67 a~~AK~LAv~a~-~~G~~v~PGDDPlLlAYLlDPsNt~p~~varRY~~---------~~W~~d---------A~~RA~~t 127 (138)
T PF09281_consen 67 AALAKDLAVHAL-REGVVVEPGDDPLLLAYLLDPSNTNPEGVARRYLG---------GEWPED---------AATRALAT 127 (138)
T ss_dssp STTHHHHHHHHH-HTT----B---HHHHHHHH-TT--SHHHHHHHH-T---------S---SS---------HHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCcccCCCCCcchhhhhcCccCCChHHHHHHhcC---------CCCCcc---------HHHHHHHH
Confidence 445666666777 57999998899999999999888899999999987 356543 77888888
Q ss_pred HHHHHHHHHHH
Q psy15183 1923 LYVYDCMKLDL 1933 (1973)
Q Consensus 1923 L~Lyd~L~~eL 1933 (1973)
.+|+..|..+|
T Consensus 128 ~~L~~~L~prL 138 (138)
T PF09281_consen 128 ARLLRALPPRL 138 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhhhcC
Confidence 88998887764
No 203
>KOG0103|consensus
Probab=84.68 E-value=9.3 Score=50.66 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=73.9
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC----------CceEEEEeeCCCceEEEEee-
Q psy15183 963 NHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE----------GQSGVIISCGYQCTHVIPVI- 1031 (1973)
Q Consensus 963 ~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g----------~~tgLVVDiG~s~T~V~PV~- 1031 (1973)
-.+++|..|.+++...|..+.+.. ..-|+.-+.+..+-.+.+.++|.. +.+-+.||+||+.++|+-+.
T Consensus 137 v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF 215 (727)
T KOG0103|consen 137 VSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAF 215 (727)
T ss_pred CCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeee
Confidence 468999999999999999988776 567888888888877777777651 45689999999999887653
Q ss_pred -cCEE-ccCCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 1032 -NGCI-DASKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1032 -dG~v-l~~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
-|.. +..+..--.+||++.+..|.+.+...
T Consensus 216 ~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 216 TKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred ccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 3332 22233344799999998888776554
No 204
>PRK09182 DNA polymerase III subunit epsilon; Validated
Probab=83.68 E-value=15 Score=45.26 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=53.0
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHhcCCccc--ccchHHHHHHH--CCCCCCcHHHHHHHHcCCCCCcccccccCC
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV--GMFDTHQACKF--LPMPRQSLAYLLKHYCDVDSDKTFQLFDWR 1903 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~--nlfDT~lAayL--L~~~~~sLa~La~~yLg~~l~K~~q~sdW~ 1903 (1973)
..+..++... -+-|+||+.+|..+|.+. +.... ...+++..... .+..+++|.+|+.+| |.. .+ .
T Consensus 112 ~~l~~fl~~~-~vlVAHNA~FD~~fL~~~-~~~~~~~~~~ct~~~i~~~~~~~~~~kL~~La~~~-g~~----~~----a 180 (294)
T PRK09182 112 AAVDALIAPA-DLIIAHNAGFDRPFLERF-SPVFATKPWACSVSEIDWSARGFEGTKLGYLAGQA-GFF----HE----G 180 (294)
T ss_pred HHHHHHhcCC-CEEEEeCHHHHHHHHHHH-HHhccCCcccccHHHHhhccccCCCCCHHHHHHHc-CCC----CC----C
Confidence 4566677653 456999999999999853 22221 34455543322 235678999999876 311 11 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1904 HRPLPEPAIQYARTDTHYLLYVYDCMKL 1931 (1973)
Q Consensus 1904 ~RPLs~eqi~YAa~DA~~LL~Lyd~L~~ 1931 (1973)
+-|..||.++..|+..+..
T Consensus 181 ---------HrAl~Da~Ata~ll~~~l~ 199 (294)
T PRK09182 181 ---------HRAVDDCQALLELLARPLP 199 (294)
T ss_pred ---------cChHHHHHHHHHHHHHHHh
Confidence 2278899999888775543
No 205
>KOG0101|consensus
Probab=83.45 E-value=15 Score=48.79 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=70.6
Q ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC-----CceEEEEeeCCCceEEEEee--cCE-E
Q psy15183 964 HPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE-----GQSGVIISCGYQCTHVIPVI--NGC-I 1035 (1973)
Q Consensus 964 ~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g-----~~tgLVVDiG~s~T~V~PV~--dG~-v 1035 (1973)
..+++|.|..+...+|...-+-. .-.|++.+-+..++.++..++|.+ ..+-||.|+|.++..|..+. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 47899999999888886655443 556888999999999988888751 35669999999999888874 443 2
Q ss_pred ccCCcEEeeccHHHHHHHHHHHH
Q psy15183 1036 DASKAKRIDLGGFSVIHHLHKLL 1058 (1973)
Q Consensus 1036 l~~si~rl~vGG~~lt~~L~~lL 1058 (1973)
+...+--.++||.+.++.|.+.+
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~ 245 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHF 245 (620)
T ss_pred hhhhcccccccchhhhHHHHHHH
Confidence 33344557899999888776654
No 206
>PRK11779 sbcB exonuclease I; Provisional
Probab=83.26 E-value=11 Score=49.18 Aligned_cols=129 Identities=14% Similarity=0.061 Sum_probs=77.2
Q ss_pred CCeEEEEeeeccCCccCCcEEEEEEEe---CCc--------eEEEEccC--c--c---------------------ccHH
Q psy15183 340 QQEIAIDLEYHNYRSYQGYTCLMQIST---RDK--------DYIVDTLK--L--R---------------------EDLE 383 (1973)
Q Consensus 340 ~~~IavDtE~~~~~s~~g~l~LIQIst---~~~--------~~lID~l~--l--~---------------------~~l~ 383 (1973)
...+.+|+|+++.++.... ++||+. ..+ ..++.+.. + . +.+.
T Consensus 6 ~~fvv~D~ETTGLdP~~Dr--IIeiAaVrvd~~~~~i~e~~~~~~~P~~~~lp~p~a~~IhGIT~e~l~~~g~~e~e~~~ 83 (476)
T PRK11779 6 PTFLWHDYETFGANPALDR--PAQFAGIRTDADLNIIGEPLVFYCKPADDYLPSPEAVLITGITPQEALEKGLPEAEFAA 83 (476)
T ss_pred CcEEEEEEECCCCCCCCCe--eEEEEEEEEeCCCceecceeEEEEcCCcCcCCCHHHHHHhCCCHHHHHhcCCCHHHHHH
Confidence 4578999999998876554 455552 111 23333321 0 0 0122
Q ss_pred HHHHHHcCCCceeeecc-hhHhHHHHHHHhCCc---c-----------cceeehhhhhhhc------------CCCCccH
Q psy15183 384 VLNEVLTDKNIVKVFHG-ADSDIKWLQKDFGLY---V-----------VGMFDTHQACKFL------------PMPRQSL 436 (1973)
Q Consensus 384 ~L~~lL~dp~I~KV~H~-ak~Dl~~L~r~~Gi~---~-----------~nlFDT~lAA~lL------------g~~~~sL 436 (1973)
.+.++|..+..+-|+|| +.+|...+.+.+... + ..++|+..+++.+ |.+++.|
T Consensus 84 ~i~~~l~~~~~~lVGhNni~FD~eflr~~~~r~~~d~y~~~~~~~n~r~D~LDl~rl~~~lrp~~i~~P~~~~g~~s~rL 163 (476)
T PRK11779 84 RIHAEFSQPGTCILGYNNIRFDDEVTRYIFYRNFYDPYAREWQNGNSRWDLLDVVRACYALRPEGINWPENEDGLPSFKL 163 (476)
T ss_pred HHHHHHhcCCCEEEEeCchhhcHHHHHHHHHhccchHHHHHhcCCCCccCHHHHHHHHHHhccccccCcccccCCCCCcH
Confidence 45556654455569997 689998885544211 0 1234665655543 3355889
Q ss_pred HHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHH
Q psy15183 437 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 487 (1973)
Q Consensus 437 a~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~ 487 (1973)
+.|+.+| |+.... .+=|..||..+..|+..|+.+
T Consensus 164 e~L~~~~-gI~~~~----------------AHdALsDa~aT~~la~~l~~~ 197 (476)
T PRK11779 164 EHLTKAN-GIEHEN----------------AHDAMSDVYATIAMAKLIKQK 197 (476)
T ss_pred HHHHHHc-CCCCCC----------------CCCcHHHHHHHHHHHHHHHHh
Confidence 9999875 544321 133789999999999998765
No 207
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=82.53 E-value=9.7 Score=44.36 Aligned_cols=137 Identities=20% Similarity=0.326 Sum_probs=77.8
Q ss_pred CeEEEEeeeccCCc------cCCcEEEEEEEeCCc---eEEEEccCccc---cHHHHHHHHc--CCCceeeecch-hHhH
Q psy15183 341 QEIAIDLEYHNYRS------YQGYTCLMQISTRDK---DYIVDTLKLRE---DLEVLNEVLT--DKNIVKVFHGA-DSDI 405 (1973)
Q Consensus 341 ~~IavDtE~~~~~s------~~g~l~LIQIst~~~---~~lID~l~l~~---~l~~L~~lL~--dp~I~KV~H~a-k~Dl 405 (1973)
..+++|+|..+... ..+.-..+||+.... ..++. ..... .+..+.+++. ||.|+ |+||. .+|+
T Consensus 10 kilsfDIE~~~~~~~~~p~p~~~~d~Ii~Is~~~~~~~~~~~~-~~~~~E~~lL~~f~~~i~~~dPdii-~g~N~~~FD~ 87 (207)
T cd05785 10 RRLQLDIETYSLPGFFFSNPDRGDDRIIIVALRDNRGWEEVLH-AEDAAEKELLEELVAIIRERDPDVI-EGHNIFRFDL 87 (207)
T ss_pred eEEEEEEEecCCCCccCCCCCCCCCeEEEEecccCCCceeeec-cCCCCHHHHHHHHHHHHHHhCCCEE-eccCCcccCH
Confidence 57899999865332 123346788886422 11221 11112 2344444444 46653 78998 7899
Q ss_pred HHHHH---HhCCcc--------------------------------cceeehhhhhhhc-----CCCCccHHHHHHHH--
Q psy15183 406 KWLQK---DFGLYV--------------------------------VGMFDTHQACKFL-----PMPRQSLAYLLKHY-- 443 (1973)
Q Consensus 406 ~~L~r---~~Gi~~--------------------------------~nlFDT~lAA~lL-----g~~~~sLa~Lv~~y-- 443 (1973)
..|.+ .+|+.. .-++|++.+..-. ...+++|..+++.+
T Consensus 88 pyl~~R~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~Gr~~iDl~~~~~~~~~~~~~l~sysL~~Va~~~g~ 167 (207)
T cd05785 88 PYLRRRCRRHGVPLAIGRDGSIPRQRPSRFRFAERLIDYPRYDIPGRHVIDTYFLVQLFDVSSRDLPSYGLKAVAKHFGL 167 (207)
T ss_pred HHHHHHHHHhCCCcccccCCCcceEeeccccccccccccceEEecCEEEEEcHHHHHhhcccccCCCCCCHHHHHHHhcc
Confidence 88753 345432 1127887765532 34568999999986
Q ss_pred cCCC-CC-cccccc-cCCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 444 CDVD-SD-KTFQLF-DWRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 444 lgv~-ld-K~~q~s-DW~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
++.. .+ ...+.. -|...+ +..++|...||..++.|+
T Consensus 168 ~~~~k~d~~~~~I~~l~~~~~--~~l~~Y~~~D~~~t~~l~ 206 (207)
T cd05785 168 ASPDRTYIDGRQIAEVWRSDP--ARLLAYALDDVRETEGLA 206 (207)
T ss_pred cCCCcCCCCHHHHHHHHhcCH--HHHHHHHHHHHHHHHHhh
Confidence 2221 11 001111 255442 567799999999998875
No 208
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=79.61 E-value=4.7 Score=52.65 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=90.5
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHHHHH
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFD 948 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i~~ 948 (1973)
..-|||+||.+||.=.+--. | -.+..+.+.+... -.|+.... .|.+ +-+++++.+.
T Consensus 4 ~~A~IDiGSNS~rlvV~~~~-~--~~~~~l~~~k~~v-------rLgegl~~-------------~g~L-~~eai~R~~~ 59 (492)
T COG0248 4 RVAAIDLGSNSFRLVVAEIT-P--GSFQVLFREKRIV-------RLGEGLDA-------------TGNL-SEEAIERALS 59 (492)
T ss_pred eEEEEEecCCeEEEEEEecc-C--Cccchhhhhhhhe-------ehhcCccc-------------cCCc-CHHHHHHHHH
Confidence 35699999999999777322 2 1122233222111 12222111 1222 3466666666
Q ss_pred HH--Hhhc--CcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhcCC--C-CceEEEEe
Q psy15183 949 YA--FSHL--SINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNGW--E-GQSGVIIS 1019 (1973)
Q Consensus 949 ~i--f~~L--~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~--~~~sllS~ya~G~--g-~~tgLVVD 1019 (1973)
-+ |..+ +.... .-.++.-..+-...+...+...+-+.+|++-=.+ -.++-++++|+.. + ...+||+|
T Consensus 60 aL~~f~e~~~~~~~~----~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~D 135 (492)
T COG0248 60 ALKRFAELLDGFGAE----EVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVID 135 (492)
T ss_pred HHHHHHHHHhhCCCC----EEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 43 2221 22222 2233333344445566677777778888874433 2556777777643 2 47899999
Q ss_pred eCCCceEEEEeecCEEccCCcEEeeccHHHHHHHH
Q psy15183 1020 CGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHL 1054 (1973)
Q Consensus 1020 iG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L 1054 (1973)
+|.++|-++=+-+..+. ....+|+|+-.+++.+
T Consensus 136 IGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 136 IGGGSTELVLGDNFEIG--LLISLPLGCVRLTERF 168 (492)
T ss_pred ecCCeEEEEEecCCccc--eeEEeecceEEeehhh
Confidence 99999999988776666 5667889977665543
No 209
>PRK11779 sbcB exonuclease I; Provisional
Probab=79.35 E-value=27 Score=45.67 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=56.5
Q ss_pred HHHHHHcCCCceEeecc-hHHHHHHHHHhcCCcc--------------cccchHHHHHHHC------------CCCCCcH
Q psy15183 1829 VLNEVLTDKNIVKVFHG-ADSDIKWLQKDFGLYV--------------VGMFDTHQACKFL------------PMPRQSL 1881 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg-~K~Di~~Lqr~~GI~l--------------~nlfDT~lAayLL------------~~~~~sL 1881 (1973)
.+..+|..+..+-|||| +.+|...|++.+.... ..++|++.+++.+ +..++.|
T Consensus 84 ~i~~~l~~~~~~lVGhNni~FD~eflr~~~~r~~~d~y~~~~~~~n~r~D~LDl~rl~~~lrp~~i~~P~~~~g~~s~rL 163 (476)
T PRK11779 84 RIHAEFSQPGTCILGYNNIRFDDEVTRYIFYRNFYDPYAREWQNGNSRWDLLDVVRACYALRPEGINWPENEDGLPSFKL 163 (476)
T ss_pred HHHHHHhcCCCEEEEeCchhhcHHHHHHHHHhccchHHHHHhcCCCCccCHHHHHHHHHHhccccccCcccccCCCCCcH
Confidence 45556654555679997 6899988764331110 1245777776664 2356899
Q ss_pred HHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1882 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1882 a~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
+.|+++| |+.... .+-|-.||.++..|+..|+.+
T Consensus 164 e~L~~~~-gI~~~~----------------AHdALsDa~aT~~la~~l~~~ 197 (476)
T PRK11779 164 EHLTKAN-GIEHEN----------------AHDAMSDVYATIAMAKLIKQK 197 (476)
T ss_pred HHHHHHc-CCCCCC----------------CCCcHHHHHHHHHHHHHHHHh
Confidence 9999986 544311 122778999999999998755
No 210
>PRK07983 exodeoxyribonuclease X; Provisional
Probab=78.85 E-value=24 Score=41.62 Aligned_cols=78 Identities=15% Similarity=-0.077 Sum_probs=52.2
Q ss_pred ceEeecchHHHHHHHHHhcCCcccccchHHHHHHHCC-CCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHH
Q psy15183 1839 IVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYART 1917 (1973)
Q Consensus 1839 I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~-~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~ 1917 (1973)
-.-|+||+.+|...|. .++ ...+||+..++.+- ...++|..|+..| ++..+... .. ..+-|..
T Consensus 75 ~~lVaHNa~FD~~~L~-~~~---~~~idTl~lar~l~p~~~~~l~~L~~~~-~l~~~~~~-~~----------~aHrAl~ 138 (219)
T PRK07983 75 EWYVAHNASFDRRVLP-EMP---GEWICTMKLARRLWPGIKYSNMALYKSR-KLNVQTPP-GL----------HHHRALY 138 (219)
T ss_pred CEEEEeCcHhhHHHHh-CcC---CCcEeHHHHHHHHccCCCCCHHHHHHHc-CCCCCCCC-CC----------CCCcHHH
Confidence 4569999999999987 232 35789999887553 3348898888654 54421100 00 0133788
Q ss_pred HHHHHHHHHHHHHHH
Q psy15183 1918 DTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1918 DA~~LL~Lyd~L~~e 1932 (1973)
||.++..|+..+.+.
T Consensus 139 Da~ata~ll~~l~~~ 153 (219)
T PRK07983 139 DCYITAALLIDIMNT 153 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887643
No 211
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases. The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged
Probab=78.71 E-value=11 Score=43.53 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=61.0
Q ss_pred HHHHHHHHc--CCCceEeecch-HHHHHHHHH---hcCCcc------------------------cc--cchHHHHHH--
Q psy15183 1827 LEVLNEVLT--DKNIVKVFHGA-DSDIKWLQK---DFGLYV------------------------VG--MFDTHQACK-- 1872 (1973)
Q Consensus 1827 l~~L~~lLe--dp~I~KV~Hg~-K~Di~~Lqr---~~GI~l------------------------~n--lfDT~lAay-- 1872 (1973)
+..+..++. ||.|+ +|||. .+|+..|.. .+|+.. .+ ++|++...+
T Consensus 55 L~~f~~~i~~~dPDvi-~g~N~~~FD~~yl~~R~~~~~i~~~~gR~~~~~~~~~~g~~~~~~~~i~GR~~~D~~~~~k~~ 133 (193)
T cd05784 55 LLALIAWFAQYDPDII-IGWNVINFDLRLLQRRAEAHGLPLRLGRGGSPLNWRQSGKPGQGFLSLPGRVVLDGIDALKTA 133 (193)
T ss_pred HHHHHHHHHhhCCCEE-EECCCcCcCHHHHHHHHHHhCCCcccccCCCccccccCCcCCcceEEEeeEEEEEhHHHHHHc
Confidence 344444443 56654 89997 458877642 234432 11 568776554
Q ss_pred HCCCCCCcHHHHHHHHcCCCCCc-cc-----ccc-cCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15183 1873 FLPMPRQSLAYLLKHYCDVDSDK-TF-----QLF-DWRHRPLPEPAIQYARTDTHYLLYVYD 1927 (1973)
Q Consensus 1873 LL~~~~~sLa~La~~yLg~~l~K-~~-----q~s-dW~~RPLs~eqi~YAa~DA~~LL~Lyd 1927 (1973)
.....+++|..+++++||..... .. +.. -|...+ ...+.|+..||..+++|++
T Consensus 134 ~~kl~sy~L~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~--~~l~~Y~~~Da~L~l~L~~ 193 (193)
T cd05784 134 TYHFESFSLENVAQELLGEGKLIHDVDDRGAEIERLFREDK--LALARYNLQDCELVWRIFE 193 (193)
T ss_pred cCCCCcCCHHHHHHHHhCCCccccCcccCHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHhC
Confidence 34677889999999999964321 11 111 243333 5678999999999999874
No 212
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=78.54 E-value=16 Score=44.64 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=96.3
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHHHH
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIF 947 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i~ 947 (1973)
.-.|=||+|++++.+=|+- ..+-|.....+-+. . -++..++ .++. --+..|++..---+-+++..+.
T Consensus 5 ilSVGIDiGTsTTQvifS~-----lel~Nmas~~~VPr----i-~ii~kdi-~~rS--~i~FTPv~~q~~id~~alk~~v 71 (473)
T COG4819 5 ILSVGIDIGTSTTQVIFSK-----LELVNMASVSQVPR----I-EIIKKDI-SWRS--PIFFTPVDKQGGIDEAALKKLV 71 (473)
T ss_pred eeeeeeeccCceeeeeeee-----eEEeecccccccce----E-EEEecce-eeec--ceeeeeecccCCccHHHHHHHH
Confidence 3457899999999988872 22222111111000 0 0111111 1111 2345677665555778888888
Q ss_pred HHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHH---HHHHHHHhcCCCeEeechhhHHhhhhcCCC------CceEEEE
Q psy15183 948 DYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSL---MSELLFECYQVPSVCYGIDSLFSYQYNGWE------GQSGVII 1018 (1973)
Q Consensus 948 ~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~---l~ElLFE~~~vpav~~~~~sllS~ya~G~g------~~tgLVV 1018 (1973)
..-+..-|+.|++-..-.||+|--..-.+..|.- |+..+ -.|-|...--.-+++.|-.|+|.- .+.-+=+
T Consensus 72 ~eeY~~AGi~pesi~sGAvIITGEtArk~NA~~vl~alSg~a-GDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~Nl 150 (473)
T COG4819 72 LEEYQAAGIAPESIDSGAVIITGETARKRNARPVLMALSGSA-GDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNL 150 (473)
T ss_pred HHHHHHcCCChhccccccEEEeccccccccchHHHHHhhhcc-cceEEEecCCCHHHHhccCCccccchhhhhceEEEEE
Confidence 8888888999886556678888666544444433 22221 122222222223456665555541 2334457
Q ss_pred eeCCCceEEEEeecCEEccCCcEEeeccHHHH
Q psy15183 1019 SCGYQCTHVIPVINGCIDASKAKRIDLGGFSV 1050 (1973)
Q Consensus 1019 DiG~s~T~V~PV~dG~vl~~si~rl~vGG~~l 1050 (1973)
|||.++|...-+.-|.++..+ -+++||+.+
T Consensus 151 DIGGGTtN~slFD~Gkv~dTa--CLdiGGRLi 180 (473)
T COG4819 151 DIGGGTTNYSLFDAGKVSDTA--CLDIGGRLI 180 (473)
T ss_pred eccCCccceeeecccccccce--eeecCcEEE
Confidence 999999999999999998655 478999854
No 213
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=78.43 E-value=20 Score=44.52 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=23.5
Q ss_pred ceEEEEeeCCCceEEEEeecCEEcc
Q psy15183 1013 QSGVIISCGYQCTHVIPVINGCIDA 1037 (1973)
Q Consensus 1013 ~tgLVVDiG~s~T~V~PV~dG~vl~ 1037 (1973)
.+++++|||.++|.|+||.+|.+..
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~G~p~~ 152 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIIDGEVAA 152 (318)
T ss_pred CCEEEEEcCccceeeEEecCCEeee
Confidence 7899999999999999999999874
No 214
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=78.22 E-value=29 Score=39.88 Aligned_cols=142 Identities=16% Similarity=0.266 Sum_probs=79.9
Q ss_pred ceeEEEeeeccCCc----cCCceeEEEEEeCCce-EEEEc--CCchhhHHHHHHHHc--CCCceEeecch-HHHHHHHH-
Q psy15183 1786 QEIAIDLEYHNYRS----YQGYTCLMQISTRDKD-YIVDT--LKLREDLEVLNEVLT--DKNIVKVFHGA-DSDIKWLQ- 1854 (1973)
Q Consensus 1786 ~~IavDlE~~~~~s----~~g~v~LlQISt~~~~-~iiD~--l~l~~~l~~L~~lLe--dp~I~KV~Hg~-K~Di~~Lq- 1854 (1973)
..++||+|+.+... -...+..|.++..++. .++.. ..-...+..+..++. ||.++ +|+|. .+|+-.|.
T Consensus 4 ~~l~fDIEt~~~~gfp~~~~d~Ii~Is~~~~~g~~~~~~~~~~~E~~lL~~F~~~i~~~dPd~i-~gyN~~~FDlpyl~~ 82 (188)
T cd05781 4 KTLAFDIEVYSKYGTPNPRRDPIIVISLATSNGDVEFILAEGLDDRKIIREFVKYVKEYDPDII-VGYNSNAFDWPYLVE 82 (188)
T ss_pred eEEEEEEEecCCCCCCCCCCCCEEEEEEEeCCCCEEEEEecCCCHHHHHHHHHHHHHHcCCCEE-EecCCCcCcHHHHHH
Confidence 46899999974221 1234444444443332 23221 111223445555554 46654 68885 57887663
Q ss_pred --HhcCCccc--------------------c--cchHHHHHHHC-CCCCCcHHHHHHHHcCCC--CCc----ccccc-cC
Q psy15183 1855 --KDFGLYVV--------------------G--MFDTHQACKFL-PMPRQSLAYLLKHYCDVD--SDK----TFQLF-DW 1902 (1973)
Q Consensus 1855 --r~~GI~l~--------------------n--lfDT~lAayLL-~~~~~sLa~La~~yLg~~--l~K----~~q~s-dW 1902 (1973)
+.+|+.+. + .+|++...+-. ..++++|+.+++ +||.. ..| ..+.. -|
T Consensus 83 Ra~~~gi~~~~gr~~~~~~~~~~~~~~~i~Gr~~iDl~~~~~~~~~l~~y~L~~Va~-~Lg~~k~~~k~~~~~~~i~~~~ 161 (188)
T cd05781 83 RARVLGVKLDVGRRGGSEPSTGVYGHYSITGRLNVDLYDFAEEIPEVKVKTLENVAE-YLGVMKKSERVLIEWYRIYEYW 161 (188)
T ss_pred HHHHhCCCcccccCCCcccccCCcceEeeeeEEEEEhHHHHHhhCCCCCCCHHHHHH-HHCCCccccccCCCHHHHHHHH
Confidence 23564431 1 56777654433 467889999997 68863 111 11222 25
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1903 RHRPLPEPAIQYARTDTHYLLYVYDCM 1929 (1973)
Q Consensus 1903 ~~RPLs~eqi~YAa~DA~~LL~Lyd~L 1929 (1973)
+..--......|...|+..++.|+..+
T Consensus 162 ~~~~~~~~l~~Y~~~D~~~t~~l~~~~ 188 (188)
T cd05781 162 DDEKKRDILLKYNRDDARSTYGLAEKL 188 (188)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhhC
Confidence 432144677899999999999998753
No 215
>KOG1275|consensus
Probab=76.57 E-value=2.2 Score=57.17 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=66.2
Q ss_pred HHcCCCceeeecchhHhHHHHHHHhCCcccceeehhhhhhhcCCC-CccHHHHHHHHcCCCCCcccccccCCCCCCCchh
Q psy15183 388 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 466 (1973)
Q Consensus 388 lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~-~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eq 466 (1973)
+|-+-.++-||||...|.+.+ ..-+....++||.+. .++|.. ..||.+|+-.+||.++.-..-
T Consensus 1009 ~Li~~GviFVGHGL~nDFrvI--Ni~Vp~~QiiDTv~l-f~~~s~R~LSLrfLa~~lLg~~IQ~~~H------------- 1072 (1118)
T KOG1275|consen 1009 LLIQRGVIFVGHGLQNDFRVI--NIHVPEEQIIDTVTL-FRLGSQRMLSLRFLAWELLGETIQMEAH------------- 1072 (1118)
T ss_pred HHHHcCcEEEcccccccceEE--EEecChhhheeeeEE-EecccccEEEHHHHHHHHhcchhhcccc-------------
Confidence 677889999999999998877 222333458999543 344543 469999999999987643221
Q ss_pred HhHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Q psy15183 467 IQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFT 504 (1973)
Q Consensus 467 l~YAa~Da~~Ll~L~d~L~~~L~e~g~~~~~~l~~v~~ 504 (1973)
=..+||++.|.||++- -+|+++| .++.++.
T Consensus 1073 --DSIeDA~taLkLYk~Y-l~lkeq~-----~~~~~l~ 1102 (1118)
T KOG1275|consen 1073 --DSIEDARTALKLYKKY-LKLKEQG-----KLESELR 1102 (1118)
T ss_pred --ccHHHHHHHHHHHHHH-HHHHHhh-----HHHHHHH
Confidence 1468999999999986 5677777 3554444
No 216
>KOG3657|consensus
Probab=75.79 E-value=6.4 Score=52.61 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=66.8
Q ss_pred CceEeecchHHHHHHHHHhcCCcccc--cchHHHHHHH--------------------------------------CCCC
Q psy15183 1838 NIVKVFHGADSDIKWLQKDFGLYVVG--MFDTHQACKF--------------------------------------LPMP 1877 (1973)
Q Consensus 1838 ~I~KV~Hg~K~Di~~Lqr~~GI~l~n--lfDT~lAayL--------------------------------------L~~~ 1877 (1973)
.-+.||||..+|...++..|.|.-.. +.|||-.+-. |+..
T Consensus 241 e~liVGHNVsfDRaRirEeY~i~~Sk~rFlDTMSlHia~~Gm~S~Qrplw~ka~k~k~a~~d~~~~ps~~d~~~pWL~~S 320 (1075)
T KOG3657|consen 241 EQLIVGHNVSFDRARIREEYNINGSKIRFLDTMSLHIAMSGMCSRQRPLWFKARKAKSAMYDSETNPSISDYDNPWLGRS 320 (1075)
T ss_pred CceEEeccccchHHHHHHHHhccccceeeeechhhhhhhhccccccchhHhhhhhhhhhhhhcccCCchhhhhhhhhhhh
Confidence 45679999999999998888876553 4698865221 1211
Q ss_pred -CCcHHHHHHHHcCCC-CCcccccccCCCCCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1878 -RQSLAYLLKHYCDVD-SDKTFQLFDWRHRPLPEP--------AIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1878 -~~sLa~La~~yLg~~-l~K~~q~sdW~~RPLs~e--------qi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
-.||.++.+.|||.+ ++|..... +- ..+.+ .+.|.|.|+..+.++|..+.....+
T Consensus 321 S~NSL~dVhk~~c~~~~LdKt~Rd~-Fv--s~~~e~Ire~fq~L~~YCA~Dv~aThqVf~~lfP~Fle 385 (1075)
T KOG3657|consen 321 SLNSLVDVHKFHCGIDALDKTPRDS-FV--SGTKEQIRENFQPLMNYCARDVIATHQVFFRLFPLFLE 385 (1075)
T ss_pred hhHHHHHHHHhhCCCCccccchHHh-hh--cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence 236888899999988 66654321 11 12233 3489999999999999999988765
No 217
>PRK07983 exodeoxyribonuclease X; Provisional
Probab=74.64 E-value=37 Score=40.00 Aligned_cols=76 Identities=17% Similarity=-0.023 Sum_probs=51.1
Q ss_pred eeeecchhHhHHHHHHHhCCcccceeehhhhhhhc-CCCCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHh
Q psy15183 395 VKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL-PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTD 473 (1973)
Q Consensus 395 ~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lL-g~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~D 473 (1973)
.-|+||+.+|...|. .+ ....+||+-.++.+ ....+++..|+.. +|+..+.. + ....+=|..|
T Consensus 76 ~lVaHNa~FD~~~L~-~~---~~~~idTl~lar~l~p~~~~~l~~L~~~-~~l~~~~~-----~------~~~aHrAl~D 139 (219)
T PRK07983 76 WYVAHNASFDRRVLP-EM---PGEWICTMKLARRLWPGIKYSNMALYKS-RKLNVQTP-----P------GLHHHRALYD 139 (219)
T ss_pred EEEEeCcHhhHHHHh-Cc---CCCcEeHHHHHHHHccCCCCCHHHHHHH-cCCCCCCC-----C------CCCCCcHHHH
Confidence 459999999999983 32 24678998888654 3334889888865 45442110 0 0122448899
Q ss_pred HHHHHHHHHHHHH
Q psy15183 474 THYLLYVYDCMKL 486 (1973)
Q Consensus 474 a~~Ll~L~d~L~~ 486 (1973)
|..+..|+..|.+
T Consensus 140 a~ata~ll~~l~~ 152 (219)
T PRK07983 140 CYITAALLIDIMN 152 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888753
No 218
>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner. Sgs1 has a HRDC (helicase and RNaseD C-terminal) domain which modulates the helicase function via auxiliary contacts to DNA []. The proteins matching this entry are restricted to fungi (Saccharomycetaceae). ; PDB: 1D8B_A.
Probab=74.19 E-value=6.9 Score=38.75 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHH
Q psy15183 541 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKE 596 (1973)
Q Consensus 541 ~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~ 596 (1973)
++..|-+-|-.++.+.+-|..-.|||..|-++|..+|+|.++...+++......+.
T Consensus 8 aY~~Lr~~~~~~~~~~n~p~~~f~sd~~LKk~A~~LP~te~eF~~l~g~~~~~~~k 63 (80)
T PF11408_consen 8 AYEKLREISINLSNRMNPPNDNFMSDTILKKMATKLPTTEEEFSKLVGINEQQRKK 63 (80)
T ss_dssp HHHHHHHHHHHHHHSSSS--S-SS-HHHHHHHHHH---SHHHHGGGS---HHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCccccCCHHHHHHHHHHCCCCHHHHHHhcCCcHHHHHH
Confidence 56777788899999999999999999999999999999999999998887777543
No 219
>KOG1275|consensus
Probab=73.20 E-value=1.6 Score=58.41 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=65.2
Q ss_pred HHcCCCceEeecchHHHHHHHHHhcCCccc--ccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHH
Q psy15183 1833 VLTDKNIVKVFHGADSDIKWLQKDFGLYVV--GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 1910 (1973)
Q Consensus 1833 lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~--nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~e 1910 (1973)
+|-+-.++-||||+..|.+.+- |.+. .++||.....+=..+..+|.+|+-.+||.++......
T Consensus 1009 ~Li~~GviFVGHGL~nDFrvIN----i~Vp~~QiiDTv~lf~~~s~R~LSLrfLa~~lLg~~IQ~~~HD----------- 1073 (1118)
T KOG1275|consen 1009 LLIQRGVIFVGHGLQNDFRVIN----IHVPEEQIIDTVTLFRLGSQRMLSLRFLAWELLGETIQMEAHD----------- 1073 (1118)
T ss_pred HHHHcCcEEEcccccccceEEE----EecChhhheeeeEEEecccccEEEHHHHHHHHhcchhhccccc-----------
Confidence 5668889999999999987653 4543 3889875443322344599999999999776332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q psy15183 1911 AIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTN 1950 (1973)
Q Consensus 1911 qi~YAa~DA~~LL~Lyd~L~~eL~e~~~g~~~Ll~~V~~~ 1950 (1973)
..+||+++|.||++. -.|++++ .+.+.+..+|+.
T Consensus 1074 ----SIeDA~taLkLYk~Y-l~lkeq~-~~~~~l~niye~ 1107 (1118)
T KOG1275|consen 1074 ----SIEDARTALKLYKKY-LKLKEQG-KLESELRNIYEC 1107 (1118)
T ss_pred ----cHHHHHHHHHHHHHH-HHHHHhh-HHHHHHHHHhhc
Confidence 457999999999988 4555541 233345555543
No 220
>PRK07748 sporulation inhibitor KapD; Provisional
Probab=72.22 E-value=31 Score=40.10 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=56.8
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHHh---CCcc---cceeehhhhhhh-cC-CCCccHHHHHHHHcCCCCCccccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDF---GLYV---VGMFDTHQACKF-LP-MPRQSLAYLLKHYCDVDSDKTFQL 454 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~---Gi~~---~nlFDT~lAA~l-Lg-~~~~sLa~Lv~~ylgv~ldK~~q~ 454 (1973)
..|.+++.+.... |+|++.+|+..|.+.+ |+.. ...+|++..... .+ ...++|..++++| |+....
T Consensus 84 ~~f~~~~~~~~~~-iv~~~~fD~~fL~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~L~~~~~~~-gi~~~~---- 157 (207)
T PRK07748 84 EKLAEYDKRCKPT-IVTWGNMDMKVLKHNCEKAGVPFPFKGQCRDLSLEYKKFFGERNQTGLWKAIEEY-GKEGTG---- 157 (207)
T ss_pred HHHHHHhCcCCeE-EEEECHHHHHHHHHHHHHcCCCCcccccceeHHHHHHHHhCcCCCCCHHHHHHHc-CCCCCC----
Confidence 4566777763333 4566789999987543 5542 345677765443 33 3357999988864 543211
Q ss_pred ccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHH
Q psy15183 455 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 488 (1973)
Q Consensus 455 sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L 488 (1973)
.-+-|..||..+..|+..|..+.
T Consensus 158 -----------~~H~Al~DA~~ta~l~~~l~~~~ 180 (207)
T PRK07748 158 -----------KHHCALDDAMTTYNIFKLVEKDK 180 (207)
T ss_pred -----------CCcChHHHHHHHHHHHHHHHhCc
Confidence 11338899999999999987664
No 221
>PRK07748 sporulation inhibitor KapD; Provisional
Probab=71.17 E-value=45 Score=38.78 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCceEeecchHHHHHHHHHh---cCCcc---cccchHHHHHHHC-C-CCCCcHHHHHHHHcCCCCCcccc
Q psy15183 1827 LEVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV---VGMFDTHQACKFL-P-MPRQSLAYLLKHYCDVDSDKTFQ 1898 (1973)
Q Consensus 1827 l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l---~nlfDT~lAayLL-~-~~~~sLa~La~~yLg~~l~K~~q 1898 (1973)
+..|.+++.+...+ +.|++.+|+..|.+. +|+.. ...+|+......+ + ...++|..++++| |++... +
T Consensus 83 l~~f~~~~~~~~~~-iv~~~~fD~~fL~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~L~~~~~~~-gi~~~~--~ 158 (207)
T PRK07748 83 VEKLAEYDKRCKPT-IVTWGNMDMKVLKHNCEKAGVPFPFKGQCRDLSLEYKKFFGERNQTGLWKAIEEY-GKEGTG--K 158 (207)
T ss_pred HHHHHHHhCcCCeE-EEEECHHHHHHHHHHHHHcCCCCcccccceeHHHHHHHHhCcCCCCCHHHHHHHc-CCCCCC--C
Confidence 34566677663333 445578999888643 45542 2356777655433 3 3457999988875 543211 0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1899 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 1933 (1973)
Q Consensus 1899 ~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL 1933 (1973)
-+-|..||..+..|+..|..+.
T Consensus 159 -------------~H~Al~DA~~ta~l~~~l~~~~ 180 (207)
T PRK07748 159 -------------HHCALDDAMTTYNIFKLVEKDK 180 (207)
T ss_pred -------------CcChHHHHHHHHHHHHHHHhCc
Confidence 0237789999999999988773
No 222
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique
Probab=70.23 E-value=49 Score=38.62 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=60.3
Q ss_pred HHHHHHHHc--CCCceEeecch-HHHHHHHHH---hcCCccc----------------c--cchHHHHHH---HCCCCCC
Q psy15183 1827 LEVLNEVLT--DKNIVKVFHGA-DSDIKWLQK---DFGLYVV----------------G--MFDTHQACK---FLPMPRQ 1879 (1973)
Q Consensus 1827 l~~L~~lLe--dp~I~KV~Hg~-K~Di~~Lqr---~~GI~l~----------------n--lfDT~lAay---LL~~~~~ 1879 (1973)
+..+..++. +|.++ +|+|. .+|+..|.+ .+|+.+. + .+|++.... -+....+
T Consensus 77 L~~f~~~i~~~~Pd~i-~gyN~~~FD~pyl~~R~~~~~~~~~~~~g~~~~~~~~~~~~gr~~iDl~~~~~~~~~l~~~sy 155 (204)
T cd05779 77 LQRFFEHIREVKPHII-VTYNGDFFDWPFVEARAAIHGLSMEEEIGFRKDSEGEYKSRYIIHMDCFRWVKRDSYLPQGSQ 155 (204)
T ss_pred HHHHHHHHHHhCCCEE-EecCccccCHHHHHHHHHHhCCCchhhhCeEecCCCeEEeccEEEEEhHHHHHHhhcCCCCCc
Confidence 344444444 46664 77775 578876642 3454422 0 357666544 3445678
Q ss_pred cHHHHHHHHcCCCCCcc--cccc-cCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15183 1880 SLAYLLKHYCDVDSDKT--FQLF-DWRHRPLPEPAIQYARTDTHYLLYVYD 1927 (1973)
Q Consensus 1880 sLa~La~~yLg~~l~K~--~q~s-dW~~RPLs~eqi~YAa~DA~~LL~Lyd 1927 (1973)
+|+.+++.+||..-..- .... -|...+ ...++|...||..++.||.
T Consensus 156 sLd~Va~~~Lg~~K~~~~~~~I~~~~~~~~--~~l~~Y~~~D~~~T~~l~~ 204 (204)
T cd05779 156 GLKAVTKAKLGYDPVELDPEDMVPLAREDP--QTLASYSVSDAVATYYLYM 204 (204)
T ss_pred cHHHHHHHHhCCCcCcCCHHHHHHHHhCCc--HHHHhccHHHHHHHHHHhC
Confidence 99999999999643211 0111 255443 5678999999999999984
No 223
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases. The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged
Probab=69.45 E-value=21 Score=41.14 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=60.6
Q ss_pred HHHHHHHc--CCCceeeecchh-HhHHHHHHH---hCCcc-------------------------c-ceeehhhhhh--h
Q psy15183 383 EVLNEVLT--DKNIVKVFHGAD-SDIKWLQKD---FGLYV-------------------------V-GMFDTHQACK--F 428 (1973)
Q Consensus 383 ~~L~~lL~--dp~I~KV~H~ak-~Dl~~L~r~---~Gi~~-------------------------~-nlFDT~lAA~--l 428 (1973)
..+..++. ||.|+ ++||.. +|+..|... +|+.+ + -++|+....+ .
T Consensus 56 ~~f~~~i~~~dPDvi-~g~N~~~FD~~yl~~R~~~~~i~~~~gR~~~~~~~~~~g~~~~~~~~i~GR~~~D~~~~~k~~~ 134 (193)
T cd05784 56 LALIAWFAQYDPDII-IGWNVINFDLRLLQRRAEAHGLPLRLGRGGSPLNWRQSGKPGQGFLSLPGRVVLDGIDALKTAT 134 (193)
T ss_pred HHHHHHHHhhCCCEE-EECCCcCcCHHHHHHHHHHhCCCcccccCCCccccccCCcCCcceEEEeeEEEEEhHHHHHHcc
Confidence 34444443 46654 889874 688877532 34432 0 1568765543 3
Q ss_pred cCCCCccHHHHHHHHcCCCCCc-cc-----ccc-cCCCCCCCchhHhHHHHhHHHHHHHHH
Q psy15183 429 LPMPRQSLAYLLKHYCDVDSDK-TF-----QLF-DWRHRPLPEPAIQYARTDTHYLLYVYD 482 (1973)
Q Consensus 429 Lg~~~~sLa~Lv~~ylgv~ldK-~~-----q~s-DW~~RPLs~eql~YAa~Da~~Ll~L~d 482 (1973)
....+++|.++++++||..-.. .. +.. -|...+ ...++|+..||..+++|++
T Consensus 135 ~kl~sy~L~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~--~~l~~Y~~~Da~L~l~L~~ 193 (193)
T cd05784 135 YHFESFSLENVAQELLGEGKLIHDVDDRGAEIERLFREDK--LALARYNLQDCELVWRIFE 193 (193)
T ss_pred CCCCcCCHHHHHHHHhCCCccccCcccCHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHhC
Confidence 5677899999999999964221 11 111 244443 4678999999999998874
No 224
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=65.29 E-value=5.9 Score=49.89 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=43.1
Q ss_pred hhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceecccccc
Q psy15183 1398 LANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 1452 (1973)
Q Consensus 1398 L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSila 1452 (1973)
+-..|++|||.++-+||...|++.|..-.+ ..+|..+++|++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 456899999999999999999999864322 3467778999999999999875
No 225
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=63.76 E-value=25 Score=37.29 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=42.4
Q ss_pred EEEeeCCCceEEEEeecCEEccCCcEEeecc--------HHHHH--HHHHHHHhhhCCCCCCCCCHHHHHHH-HHHheec
Q psy15183 1016 VIISCGYQCTHVIPVINGCIDASKAKRIDLG--------GFSVI--HHLHKLLQLKYPSHINSITPSRSEEL-LWDYGFV 1084 (1973)
Q Consensus 1016 LVVDiG~s~T~V~PV~dG~vl~~si~rl~vG--------G~~lt--~~L~~lL~~k~~~~~~~~~~~~~e~i-Ke~~c~v 1084 (1973)
++||+|.++|.++-...|.... +.-+++| |.+++ +-+.+.|+. ....+|.+ +.+++.+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 6899999999999888877764 7788999 99999 888888753 35668888 8777665
Q ss_pred c
Q psy15183 1085 A 1085 (1973)
Q Consensus 1085 a 1085 (1973)
.
T Consensus 71 ~ 71 (120)
T PF14450_consen 71 Y 71 (120)
T ss_dssp -
T ss_pred E
Confidence 4
No 226
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=63.41 E-value=20 Score=43.60 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=59.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeec--hhhHHhhhhc-----CCCCceEEEEeeCCCceEEEEeecCEEccC
Q psy15183 966 IVLTEPFLNPNYSRSLMSELLFECYQVPSVCYG--IDSLFSYQYN-----GWEGQSGVIISCGYQCTHVIPVINGCIDAS 1038 (1973)
Q Consensus 966 VlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~--~~sllS~ya~-----G~g~~tgLVVDiG~s~T~V~PV~dG~vl~~ 1038 (1973)
.++.-..+-...++..+.+-+.+..|++--.+- .++.+++.|. .. .+++|||+|.++|.++.+.+|.+.
T Consensus 60 ~~vATsA~R~A~N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~--~~~lviDIGGGStEl~~~~~~~~~-- 135 (285)
T PF02541_consen 60 RAVATSALREAKNSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPD--KNGLVIDIGGGSTELILFENGKVV-- 135 (285)
T ss_dssp EEEEEHHHHHSTTHHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTT--SSEEEEEEESSEEEEEEEETTEEE--
T ss_pred EEEhhHHHHhCcCHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhcccc--CCEEEEEECCCceEEEEEECCeee--
Confidence 444444555566778889999999998744332 3344443333 33 789999999999999999999988
Q ss_pred CcEEeeccHHHHHHHH
Q psy15183 1039 KAKRIDLGGFSVIHHL 1054 (1973)
Q Consensus 1039 si~rl~vGG~~lt~~L 1054 (1973)
....+|+|.-.+++.+
T Consensus 136 ~~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 136 FSQSLPLGAVRLTERF 151 (285)
T ss_dssp EEEEES--HHHHHHHH
T ss_pred EeeeeehHHHHHHHHH
Confidence 5678999998877655
No 227
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]
Probab=63.31 E-value=82 Score=37.25 Aligned_cols=88 Identities=19% Similarity=0.207 Sum_probs=58.7
Q ss_pred HHHHHHcCCCceEeecchHHHHHHHHHh---cCCcc--cccchHHHHHHHCCC--CCCcHHHHHHHHcCCCCCccccccc
Q psy15183 1829 VLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFLPM--PRQSLAYLLKHYCDVDSDKTFQLFD 1901 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l--~nlfDT~lAayLL~~--~~~sLa~La~~yLg~~l~K~~q~sd 1901 (1973)
.+..++.+. -.-|+||+.+|+.+|... ++..+ ..+.||...++.... ..++|..|+. ++|+.... ...
T Consensus 87 ~~~~~i~~~-~~~Vahna~fD~~fl~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~L~~l~~-~~gi~~~~-~~~-- 161 (243)
T COG0847 87 EFLDFIGGL-RLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALAE-RLGIDRNP-FHP-- 161 (243)
T ss_pred HHHHHHCCC-CeEEEEchhhcHHHHHHHHHHcCCCcccCceehHHHHHHHHcCCCccchHHHHHH-HcCCCcCC-cCC--
Confidence 334455443 456999999999998643 34443 246799888777653 5779999999 55766331 111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1902 WRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1902 W~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
+-|..||..+..+|..+...
T Consensus 162 -----------H~Al~Da~~~a~~~~~~~~~ 181 (243)
T COG0847 162 -----------HRALFDALALAELFLLLQTG 181 (243)
T ss_pred -----------cchHHHHHHHHHHHHHHHhc
Confidence 22778888888888888763
No 228
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=63.01 E-value=4 Score=51.66 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=49.1
Q ss_pred ccHHHHHHHHHhcCCHHHH-HHhhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceeccccccc
Q psy15183 1377 AGISETLNFVLNSYPQHIA-QSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSL 1453 (1973)
Q Consensus 1377 ~gL~e~I~~sI~~~~~d~r-~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilas 1453 (1973)
+||..+|..-+.. .-.+ ..+-..|+++||.++.+|+.+.|.+.|. .+|..+++|++..-+||+++|+
T Consensus 335 AGl~~SIa~rv~~--~l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 335 AAACHSVAEQVYE--QQLQEIDVREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHH--HHhhcCCCCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 4666666544432 0012 2334459999999999999999999883 4678899999999999998874
No 229
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=62.35 E-value=5 Score=48.22 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=40.3
Q ss_pred cCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceecccccc
Q psy15183 1400 NNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 1452 (1973)
Q Consensus 1400 ~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSila 1452 (1973)
.+|+++||.+.-+|+.+.|+++|... ...+.|..+++|++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 36999999999999999999998532 123556667899999999998774
No 230
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=62.11 E-value=50 Score=38.57 Aligned_cols=129 Identities=19% Similarity=0.108 Sum_probs=76.3
Q ss_pred cCCccCCcEEEEEEEe---CCceEEEEccCcc---ccHHHHHHHHcCCCceeeecch-hHhHHHHHHH---hCCccc---
Q psy15183 351 NYRSYQGYTCLMQIST---RDKDYIVDTLKLR---EDLEVLNEVLTDKNIVKVFHGA-DSDIKWLQKD---FGLYVV--- 417 (1973)
Q Consensus 351 ~~~s~~g~l~LIQIst---~~~~~lID~l~l~---~~l~~L~~lL~dp~I~KV~H~a-k~Dl~~L~r~---~Gi~~~--- 417 (1973)
......+.+..|.++. .++.+.+-..... ..+..+..++.+....-|+||. .+|+..|... +|+...
T Consensus 45 ~l~~~~~~Iv~Is~~~~~~~~~~~~~~~~~~~~E~elL~~F~~~i~~~~p~lv~yNg~~FDlP~L~~Ra~~~gi~~p~~~ 124 (208)
T cd05782 45 FLPLPFHKVVSISALYRDDDGGFLKVRTLDGADEKELLEDFFQLIEKKNPRLVSFNGRGFDLPVLHLRALIHGVSAPAYF 124 (208)
T ss_pred CCccccCceEEEEEEEEecCCCeEEEeecCCCCHHHHHHHHHHHHHHhCCEEEecCCCcCCHHHHHHHHHHhCCCCcccc
Confidence 4445567787888776 3443333111111 2345555566642224589997 6999988653 555321
Q ss_pred ---------------ceeehhhhhhhcC-CCCccHHHHHHHHcCCCCCccc----ccc-cCCCCCCCchhHhHHHHhHHH
Q psy15183 418 ---------------GMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTF----QLF-DWRHRPLPEPAIQYARTDTHY 476 (1973)
Q Consensus 418 ---------------nlFDT~lAA~lLg-~~~~sLa~Lv~~ylgv~ldK~~----q~s-DW~~RPLs~eql~YAa~Da~~ 476 (1973)
..+|++.+..-.+ ..+.+|..+++ +||+. .|.. +.. -|.... -....+|...||..
T Consensus 125 ~~~~~~~~y~~r~~~~h~DL~~~~~~~~~~~~~~L~~va~-~lG~~-~K~d~~G~~v~~~y~~g~-~~~I~~Yc~~Dv~~ 201 (208)
T cd05782 125 DLGNKDWNYRNRYSERHLDLMDLLAFYGARARASLDLLAK-LLGIP-GKMDVDGSQVWELYAEGK-LDEIAEYCETDVLN 201 (208)
T ss_pred CcccchhhccCcCCCCcccHHHHHhccCccCCCCHHHHHH-HhCCC-CCcCCCHHHHHHHHHcCC-hHHHHHHHHHHHHH
Confidence 1578887665544 35689998875 67773 2211 111 255444 35677999999999
Q ss_pred HHHHHH
Q psy15183 477 LLYVYD 482 (1973)
Q Consensus 477 Ll~L~d 482 (1973)
++.||-
T Consensus 202 t~~l~l 207 (208)
T cd05782 202 TYLLYL 207 (208)
T ss_pred HHHHHh
Confidence 988874
No 231
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=61.78 E-value=79 Score=36.95 Aligned_cols=129 Identities=19% Similarity=0.103 Sum_probs=75.2
Q ss_pred cCCccCCceeEEEEEe---CCceEEEEcCCch---hhHHHHHHHHcCCCceEeecch-HHHHHHHHH---hcCCccc---
Q psy15183 1796 NYRSYQGYTCLMQIST---RDKDYIVDTLKLR---EDLEVLNEVLTDKNIVKVFHGA-DSDIKWLQK---DFGLYVV--- 1862 (1973)
Q Consensus 1796 ~~~s~~g~v~LlQISt---~~~~~iiD~l~l~---~~l~~L~~lLedp~I~KV~Hg~-K~Di~~Lqr---~~GI~l~--- 1862 (1973)
......+.++.|.++. .++.+.+-..... ..+..+..++.+-...-|+||. .+|+-.|.+ .+|+.+.
T Consensus 45 ~l~~~~~~Iv~Is~~~~~~~~~~~~~~~~~~~~E~elL~~F~~~i~~~~p~lv~yNg~~FDlP~L~~Ra~~~gi~~p~~~ 124 (208)
T cd05782 45 FLPLPFHKVVSISALYRDDDGGFLKVRTLDGADEKELLEDFFQLIEKKNPRLVSFNGRGFDLPVLHLRALIHGVSAPAYF 124 (208)
T ss_pred CCccccCceEEEEEEEEecCCCeEEEeecCCCCHHHHHHHHHHHHHHhCCEEEecCCCcCCHHHHHHHHHHhCCCCcccc
Confidence 3444567777777775 3444333222112 2344444555542224589997 679988753 2565321
Q ss_pred ---------------ccchHHHHHHHCC-CCCCcHHHHHHHHcCCCCCcc----cccc-cCCCCCCCHHHHHHHHHHHHH
Q psy15183 1863 ---------------GMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKT----FQLF-DWRHRPLPEPAIQYARTDTHY 1921 (1973)
Q Consensus 1863 ---------------nlfDT~lAayLL~-~~~~sLa~La~~yLg~~l~K~----~q~s-dW~~RPLs~eqi~YAa~DA~~ 1921 (1973)
..+|++.+..-.+ ..+.+|+.+++ +||.+ .|. .+.. -|.... ......|+..|+..
T Consensus 125 ~~~~~~~~y~~r~~~~h~DL~~~~~~~~~~~~~~L~~va~-~lG~~-~K~d~~G~~v~~~y~~g~-~~~I~~Yc~~Dv~~ 201 (208)
T cd05782 125 DLGNKDWNYRNRYSERHLDLMDLLAFYGARARASLDLLAK-LLGIP-GKMDVDGSQVWELYAEGK-LDEIAEYCETDVLN 201 (208)
T ss_pred CcccchhhccCcCCCCcccHHHHHhccCccCCCCHHHHHH-HhCCC-CCcCCCHHHHHHHHHcCC-hHHHHHHHHHHHHH
Confidence 1578888765444 35779999886 67763 221 1111 254444 45677999999999
Q ss_pred HHHHHH
Q psy15183 1922 LLYVYD 1927 (1973)
Q Consensus 1922 LL~Lyd 1927 (1973)
+..||-
T Consensus 202 t~~l~l 207 (208)
T cd05782 202 TYLLYL 207 (208)
T ss_pred HHHHHh
Confidence 988874
No 232
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]
Probab=61.58 E-value=59 Score=38.46 Aligned_cols=132 Identities=18% Similarity=0.217 Sum_probs=80.9
Q ss_pred CCeEEEEeeeccCCccCCcE---EEEEEEeC---Cc--eEEEEccC-cc---------------------ccHHHHHHHH
Q psy15183 340 QQEIAIDLEYHNYRSYQGYT---CLMQISTR---DK--DYIVDTLK-LR---------------------EDLEVLNEVL 389 (1973)
Q Consensus 340 ~~~IavDtE~~~~~s~~g~l---~LIQIst~---~~--~~lID~l~-l~---------------------~~l~~L~~lL 389 (1973)
...+.||+|+.+.+.....+ +.+.+..+ +. ..++.|-. +. .....+.+++
T Consensus 13 ~~~vv~D~ETtg~~~~~~~iieIgav~~~~~~i~~~~~~~~v~P~~~i~~~~~~i~git~e~l~~~p~~~~v~~~~~~~i 92 (243)
T COG0847 13 TRFVVIDLETTGLNPKKDRIIEIGAVTLEDGRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDFI 92 (243)
T ss_pred CcEEEEecccCCCCCCCCceEEEEeEEEECCeeecceeEEEECCCCCCChhhhhhcCCCHHHHhcCCCHHHHHHHHHHHH
Confidence 46799999999887644333 22333322 11 14565511 10 0122344555
Q ss_pred cCCCceeeecchhHhHHHHHHHh---CCcc--cceeehhhhhhhcC--CCCccHHHHHHHHcCCCCCcccccccCCCCCC
Q psy15183 390 TDKNIVKVFHGADSDIKWLQKDF---GLYV--VGMFDTHQACKFLP--MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 462 (1973)
Q Consensus 390 ~dp~I~KV~H~ak~Dl~~L~r~~---Gi~~--~nlFDT~lAA~lLg--~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPL 462 (1973)
.+. -.-|.||+.+|+.+|...+ +..+ ..+.||.-.++... ...++|..|+. .+|+.... ...
T Consensus 93 ~~~-~~~Vahna~fD~~fl~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~L~~l~~-~~gi~~~~-~~~-------- 161 (243)
T COG0847 93 GGL-RLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALAE-RLGIDRNP-FHP-------- 161 (243)
T ss_pred CCC-CeEEEEchhhcHHHHHHHHHHcCCCcccCceehHHHHHHHHcCCCccchHHHHHH-HcCCCcCC-cCC--------
Confidence 553 3458999999999986543 3332 45678887776654 35789999999 56765331 111
Q ss_pred CchhHhHHHHhHHHHHHHHHHHHHH
Q psy15183 463 PEPAIQYARTDTHYLLYVYDCMKLD 487 (1973)
Q Consensus 463 s~eql~YAa~Da~~Ll~L~d~L~~~ 487 (1973)
+=|..|+..+..+|..+...
T Consensus 162 -----H~Al~Da~~~a~~~~~~~~~ 181 (243)
T COG0847 162 -----HRALFDALALAELFLLLQTG 181 (243)
T ss_pred -----cchHHHHHHHHHHHHHHHhc
Confidence 23889999999999888764
No 233
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins. This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional ho
Probab=61.39 E-value=96 Score=34.41 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHH---HhCC-----cccceeehhhhhh-hcCC-CCccHHHHHHHHcCCCCCccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQK---DFGL-----YVVGMFDTHQACK-FLPM-PRQSLAYLLKHYCDVDSDKTF 452 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r---~~Gi-----~~~nlFDT~lAA~-lLg~-~~~sLa~Lv~~ylgv~ldK~~ 452 (1973)
..|.+++.+..-..+.|++.+|...+.+ .++. .....+|++..+. +.+. ..++|..++..| |+...
T Consensus 80 ~~~~~~l~~~~~~~~v~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~L~~l~~~~-gi~~~--- 155 (176)
T cd06133 80 KEFLEWLGKNGKYAFVTWGDWDLKDLLQNQCKYKIINLPPFFRQWIDLKKEFAKFYGLKKRTGLSKALEYL-GLEFE--- 155 (176)
T ss_pred HHHHHHHHhCCCeEEEeecHhhHHHHHHHHHHhcCCCCcccccceEEHHHHHHHHhCCCCCCCHHHHHHHC-CCCCC---
Confidence 4666777764112345556888765433 2333 2356789986555 4454 468999998664 65543
Q ss_pred ccccCCCCCCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 453 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 453 q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
...+-|-.||..+..|+..|
T Consensus 156 ------------~~~H~Al~DA~~~a~l~~~~ 175 (176)
T cd06133 156 ------------GRHHRGLDDARNIARILKRL 175 (176)
T ss_pred ------------CCCcCcHHHHHHHHHHHHHh
Confidence 11234778999998887765
No 234
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal proteins. B1 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B1displays thermostable polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family-B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Family-B DNA polymerases from thermophilic archaea are uniq
Probab=61.19 E-value=1e+02 Score=35.94 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCceEeecch-HHHHHHHHH---hcCCcc--------------c--ccchHHHHHH-------HC--CCC
Q psy15183 1827 LEVLNEVLTDKNIVKVFHGA-DSDIKWLQK---DFGLYV--------------V--GMFDTHQACK-------FL--PMP 1877 (1973)
Q Consensus 1827 l~~L~~lLedp~I~KV~Hg~-K~Di~~Lqr---~~GI~l--------------~--nlfDT~lAay-------LL--~~~ 1877 (1973)
+..+..++.+.. .-|++|. .+|+..|.+ .+|+.. . -.+|++.... .. ...
T Consensus 77 L~~F~~~i~~~~-~iig~N~~~FDlpyl~~R~~~~gi~~~~~~~~~~~~~~~~~g~~~iDl~~~~~~~~~~~~~~~~~~~ 155 (204)
T cd05783 77 IREAFKIISEYP-IVLTFNGDNFDLPYLYNRALKLGIPKEEIPIYLKRDYATLKHGIHIDLYKFFSNRAIQVYAFGNKYR 155 (204)
T ss_pred HHHHHHHHhcCC-EEEEeCCCCcCHHHHHHHHHHhCCChhhCceeecCCceeccCcEEeECHHHhhccchhhhhhccccc
Confidence 455556666654 4578886 578877642 356651 1 1367665422 12 246
Q ss_pred CCcHHHHHHHHcCCCCC-cccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15183 1878 RQSLAYLLKHYCDVDSD-KTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 1927 (1973)
Q Consensus 1878 ~~sLa~La~~yLg~~l~-K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd 1927 (1973)
+++|..+++.+||.... -..+. |.. -.+..+.|+..||..++.|..
T Consensus 156 ~~~L~~Va~~~lg~~K~~~~~~i--~~~--~~~~l~~Y~~~D~~lt~~L~~ 202 (204)
T cd05783 156 EYTLDAVAKALLGEGKVELEKNI--SEL--NLYELAEYNYRDAELTLELTT 202 (204)
T ss_pred cCcHHHHHHHhcCCCcccCCchh--hhh--cHHHHHHhhHHHHHHHHHHhc
Confidence 78999999999995321 11111 222 235667999999999988764
No 235
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=59.49 E-value=96 Score=35.67 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=79.0
Q ss_pred CeEEEEeeeccCCcc----CCcEEEEEEEeCCc-eEEEEc--cCccccHHHHHHHHc--CCCceeeecch-hHhHHHHHH
Q psy15183 341 QEIAIDLEYHNYRSY----QGYTCLMQISTRDK-DYIVDT--LKLREDLEVLNEVLT--DKNIVKVFHGA-DSDIKWLQK 410 (1973)
Q Consensus 341 ~~IavDtE~~~~~s~----~g~l~LIQIst~~~-~~lID~--l~l~~~l~~L~~lL~--dp~I~KV~H~a-k~Dl~~L~r 410 (1973)
..+++|+|..+...+ ...+..|.++..++ ..++-. ..-.+.+..+..++. ||.++ +++|. .+|+..|..
T Consensus 4 ~~l~fDIEt~~~~gfp~~~~d~Ii~Is~~~~~g~~~~~~~~~~~E~~lL~~F~~~i~~~dPd~i-~gyN~~~FDlpyl~~ 82 (188)
T cd05781 4 KTLAFDIEVYSKYGTPNPRRDPIIVISLATSNGDVEFILAEGLDDRKIIREFVKYVKEYDPDII-VGYNSNAFDWPYLVE 82 (188)
T ss_pred eEEEEEEEecCCCCCCCCCCCCEEEEEEEeCCCCEEEEEecCCCHHHHHHHHHHHHHHcCCCEE-EecCCCcCcHHHHHH
Confidence 468999999743222 23444455444333 223211 111122445555544 45643 68885 588877653
Q ss_pred ---HhCCccc----------------------ceeehhhhhhh-cCCCCccHHHHHHHHcCCC--CCc----ccccc-cC
Q psy15183 411 ---DFGLYVV----------------------GMFDTHQACKF-LPMPRQSLAYLLKHYCDVD--SDK----TFQLF-DW 457 (1973)
Q Consensus 411 ---~~Gi~~~----------------------nlFDT~lAA~l-Lg~~~~sLa~Lv~~ylgv~--ldK----~~q~s-DW 457 (1973)
.+|+.+. -.+|++...+- ...++++|..+++ +||.. .+| ..+.. -|
T Consensus 83 Ra~~~gi~~~~gr~~~~~~~~~~~~~~~i~Gr~~iDl~~~~~~~~~l~~y~L~~Va~-~Lg~~k~~~k~~~~~~~i~~~~ 161 (188)
T cd05781 83 RARVLGVKLDVGRRGGSEPSTGVYGHYSITGRLNVDLYDFAEEIPEVKVKTLENVAE-YLGVMKKSERVLIEWYRIYEYW 161 (188)
T ss_pred HHHHhCCCcccccCCCcccccCCcceEeeeeEEEEEhHHHHHhhCCCCCCCHHHHHH-HHCCCccccccCCCHHHHHHHH
Confidence 3554321 15676655433 3467799999987 68863 121 11222 25
Q ss_pred CCCCCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 458 RHRPLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 458 ~~RPLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
...--......|...|+..++.|+..+
T Consensus 162 ~~~~~~~~l~~Y~~~D~~~t~~l~~~~ 188 (188)
T cd05781 162 DDEKKRDILLKYNRDDARSTYGLAEKL 188 (188)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhhC
Confidence 431133677799999999999998753
No 236
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=59.18 E-value=9.5 Score=45.52 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=36.0
Q ss_pred CEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceecccc
Q psy15183 1401 NIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQ 1450 (1973)
Q Consensus 1401 NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSi 1450 (1973)
.|+++||.+..+++.++|.+.|. ..+..++++.+.+-+||.+
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHh
Confidence 79999999999999999998882 4577788888888888875
No 237
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins. This subfamily is composed of the N-terminal domain of Escherichia coli exonuclease I (ExoI) and similar proteins. ExoI is a monomeric enzyme that hydrolyzes single stranded DNA in the 3' to 5' direction. It plays a role in DNA recombination and repair. It primarily functions in repairing frameshift mutations. The N-terminal domain of ExoI is a DEDDh-type DnaQ-like 3'-5 exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The ExoI structure is unique among DnaQ family enzymes in that there is a large distance between the two metal ions required for catalysis and the catalytic histidine is oriented away from the active site.
Probab=58.78 E-value=45 Score=37.94 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHHcCCCceEeecc-hHHHHHHHHHhc---CCc-c-------cccchHHHHHHH---C------------CCCCCcH
Q psy15183 1829 VLNEVLTDKNIVKVFHG-ADSDIKWLQKDF---GLY-V-------VGMFDTHQACKF---L------------PMPRQSL 1881 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg-~K~Di~~Lqr~~---GI~-l-------~nlfDT~lAayL---L------------~~~~~sL 1881 (1973)
.+..++..+...-|+|| +.+|..+|++.+ |+. + ...+||.-.+++ + +..+++|
T Consensus 75 ~~~~~~~~~~~~lVahn~~~FD~~fL~~~~~r~~~~~~~~~~~~~~~~~dtl~l~r~~~~~~~~~~~~~~~~~~~~~~~L 154 (183)
T cd06138 75 KIHRLFNTPGTCIVGYNNIRFDDEFLRFAFYRNLYDPYTWEWKNGNSRWDLLDVVRAYYALRPDGIVWPKNDDGKPSFKL 154 (183)
T ss_pred HHHHHHccCCCcEEeeCchhhHHHHHHHHHHHCCCcccceeccCCccccccHHHHHHHHhhChhhccCccccCCCcchhH
Confidence 44556654444458886 799999987533 321 1 113566644333 2 1235689
Q ss_pred HHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15183 1882 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 1925 (1973)
Q Consensus 1882 a~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~L 1925 (1973)
+.|+++| |++.. ..+-|..||..+..|
T Consensus 155 ~~l~~~~-gi~~~----------------~~H~Al~Da~~ta~l 181 (183)
T cd06138 155 EDLAQAN-GIEHS----------------NAHDALSDVEATIAL 181 (183)
T ss_pred HHHHHHC-CCCcc----------------ccccHHHHHHHHHHH
Confidence 9999875 65431 113377788777655
No 238
>PF09281 Taq-exonuc: Taq polymerase, exonuclease; InterPro: IPR015361 This domain is found in prokaryotic Taq DNA polymerase (thermostable), where it assumes a ribonuclease H-like motif. The domain confers 5'-3' exonuclease activity to the polymerase []. ; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 4DF4_A 3T3F_A 1QSY_A 3OJS_A 3PO5_A 3OJU_A 1QTM_A 1QSS_A 3PY8_A 4DFJ_A ....
Probab=58.15 E-value=25 Score=37.71 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=43.2
Q ss_pred hHhHHHHHHHhCCcccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 402 DSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 402 k~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
-.|+..+...-|+.+.+=-|-|+.+|||+........++++|+| .+|... |+..+....+|+
T Consensus 70 AK~LAv~a~~~G~~v~PGDDPlLlAYLlDPsNt~p~~varRY~~---------~~W~~d---------A~~RA~~t~~L~ 131 (138)
T PF09281_consen 70 AKDLAVHALREGVVVEPGDDPLLLAYLLDPSNTNPEGVARRYLG---------GEWPED---------AATRALATARLL 131 (138)
T ss_dssp HHHHHHHHHHTT----B---HHHHHHHH-TT--SHHHHHHHH-T---------S---SS---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccCCCCCcchhhhhcCccCCChHHHHHHhcC---------CCCCcc---------HHHHHHHHHHHH
Confidence 35666655788998888889999999999888899999999987 457544 677777888888
Q ss_pred HHHHHHH
Q psy15183 482 DCMKLDL 488 (1973)
Q Consensus 482 d~L~~~L 488 (1973)
..|..+|
T Consensus 132 ~~L~prL 138 (138)
T PF09281_consen 132 RALPPRL 138 (138)
T ss_dssp HHHHHHT
T ss_pred HHhhhcC
Confidence 8877664
No 239
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique
Probab=57.76 E-value=1.1e+02 Score=35.69 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=59.7
Q ss_pred HHHHHHHcC--CCceeeecch-hHhHHHHHH---HhCCccc--------c----------eeehhhhhh---hcCCCCcc
Q psy15183 383 EVLNEVLTD--KNIVKVFHGA-DSDIKWLQK---DFGLYVV--------G----------MFDTHQACK---FLPMPRQS 435 (1973)
Q Consensus 383 ~~L~~lL~d--p~I~KV~H~a-k~Dl~~L~r---~~Gi~~~--------n----------lFDT~lAA~---lLg~~~~s 435 (1973)
..+.+++.+ |.++ +++|. .+|+..|.. .+|+.+. . .+|++.... .+..+.++
T Consensus 78 ~~f~~~i~~~~Pd~i-~gyN~~~FD~pyl~~R~~~~~~~~~~~~g~~~~~~~~~~~~gr~~iDl~~~~~~~~~l~~~sys 156 (204)
T cd05779 78 QRFFEHIREVKPHII-VTYNGDFFDWPFVEARAAIHGLSMEEEIGFRKDSEGEYKSRYIIHMDCFRWVKRDSYLPQGSQG 156 (204)
T ss_pred HHHHHHHHHhCCCEE-EecCccccCHHHHHHHHHHhCCCchhhhCeEecCCCeEEeccEEEEEhHHHHHHhhcCCCCCcc
Confidence 344444444 5554 67775 588877653 3454321 0 356655443 34445789
Q ss_pred HHHHHHHHcCCCCCcc-c-cc-ccCCCCCCCchhHhHHHHhHHHHHHHHH
Q psy15183 436 LAYLLKHYCDVDSDKT-F-QL-FDWRHRPLPEPAIQYARTDTHYLLYVYD 482 (1973)
Q Consensus 436 La~Lv~~ylgv~ldK~-~-q~-sDW~~RPLs~eql~YAa~Da~~Ll~L~d 482 (1973)
|..+++.+||..-..- . .. .-|...+ ..-++|...||..++.||.
T Consensus 157 Ld~Va~~~Lg~~K~~~~~~~I~~~~~~~~--~~l~~Y~~~D~~~T~~l~~ 204 (204)
T cd05779 157 LKAVTKAKLGYDPVELDPEDMVPLAREDP--QTLASYSVSDAVATYYLYM 204 (204)
T ss_pred HHHHHHHHhCCCcCcCCHHHHHHHHhCCc--HHHHhccHHHHHHHHHHhC
Confidence 9999999999742211 0 10 1255544 5677999999999999883
No 240
>KOG2248|consensus
Probab=57.18 E-value=25 Score=44.61 Aligned_cols=83 Identities=23% Similarity=0.180 Sum_probs=53.5
Q ss_pred HHHHHHcCCCceEeecchHHHHHHHHHhcCCcccccchHHHHH-HHCCC-C-CCcHHHHHHHHcCCCCCcccccccCCCC
Q psy15183 1829 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC-KFLPM-P-RQSLAYLLKHYCDVDSDKTFQLFDWRHR 1905 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAa-yLL~~-~-~~sLa~La~~yLg~~l~K~~q~sdW~~R 1905 (1973)
.|..++ +++-+-|||+.-.|+..|+..| ..+.||.+.- +-.+. + ..+|+.|++.|||..+......
T Consensus 286 ~l~~~~-~~~TILVGHSLenDL~aLKl~H----~~ViDTa~lf~~~~g~~~~k~sLk~L~~~~L~~~Iq~~~~~------ 354 (380)
T KOG2248|consen 286 ELLELI-SKNTILVGHSLENDLKALKLDH----PSVIDTAVLFKHPTGPYPFKSSLKNLAKSYLGKLIQEGVGG------ 354 (380)
T ss_pred HHHhhc-CcCcEEEeechhhHHHHHhhhC----CceeeeeEEEecCCCCccchHHHHHHHHHHHHHHHhccCCC------
Confidence 566644 5666679999999999998533 3466887322 22231 2 3479999999998665410000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1906 PLPEPAIQYARTDTHYLLYVYDCM 1929 (1973)
Q Consensus 1906 PLs~eqi~YAa~DA~~LL~Lyd~L 1929 (1973)
+-+.+||+.++.|....
T Consensus 355 -------HdS~eDA~acm~Lv~~k 371 (380)
T KOG2248|consen 355 -------HDSVEDALACMKLVKLK 371 (380)
T ss_pred -------CccHHHHHHHHHHHHHH
Confidence 11567888888876654
No 241
>PRK13317 pantothenate kinase; Provisional
Probab=57.07 E-value=9.8 Score=46.34 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHhcCCHH-HHHHhhcCEEEEC-CCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceeccccccc
Q psy15183 1377 AGISETLNFVLNSYPQH-IAQSLANNIFVTG-SLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSL 1453 (1973)
Q Consensus 1377 ~gL~e~I~~sI~~~~~d-~r~~L~~NIvLTG-G~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilas 1453 (1973)
.||..+|.+.|..+..- .|..-..+|+++| |.+..|++.++|.+.+.. ...++..+++|+|..-+||.+++.
T Consensus 200 asl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 200 AGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence 46666776666543211 2333458999999 799999999999987643 235778899999999999997764
No 242
>PRK13324 pantothenate kinase; Reviewed
Probab=56.72 E-value=1.8e+02 Score=35.25 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.8
Q ss_pred eEEEEcCcceEEEEEeCCC
Q psy15183 870 PIVFDNGAWCCRVGWASCE 888 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~ 888 (1973)
-++||+|-.++|.|+..++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 3789999999999987543
No 243
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=55.82 E-value=6.1 Score=48.22 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=39.8
Q ss_pred HhhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEE-ecCCCcccceeccccccc
Q psy15183 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVS-LAENPELDAWSGARQFSL 1453 (1973)
Q Consensus 1397 ~L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~-~~~dp~~~aW~GaSilas 1453 (1973)
.+-..|+++||.+.-+|+.+.|+++|.. .|. .+++|++..-+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 3556799999999999999999998842 233 366799999999999874
No 244
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=54.66 E-value=1.5e+02 Score=35.41 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=33.2
Q ss_pred eEEEEeeCCCceEEEEeecCEEccCC-cEEeeccHHHHHHHHHHHH
Q psy15183 1014 SGVIISCGYQCTHVIPVINGCIDASK-AKRIDLGGFSVIHHLHKLL 1058 (1973)
Q Consensus 1014 tgLVVDiG~s~T~V~PV~dG~vl~~s-i~rl~vGG~~lt~~L~~lL 1058 (1973)
...|||||.+.|.++-+-+|.+..-. ......|+...++.+.+.|
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 44699999999999999999876322 2345677777777766665
No 245
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair]
Probab=53.10 E-value=2.2e+02 Score=34.22 Aligned_cols=149 Identities=20% Similarity=0.291 Sum_probs=86.7
Q ss_pred ceeEEEeeeccCCccCCcee-EEEEEeC-CceEEEEcC---CchhhHHHHHHHHcCCC--ceEeecchHHHHHHHHH---
Q psy15183 1786 QEIAIDLEYHNYRSYQGYTC-LMQISTR-DKDYIVDTL---KLREDLEVLNEVLTDKN--IVKVFHGADSDIKWLQK--- 1855 (1973)
Q Consensus 1786 ~~IavDlE~~~~~s~~g~v~-LlQISt~-~~~~iiD~l---~l~~~l~~L~~lLedp~--I~KV~Hg~K~Di~~Lqr--- 1855 (1973)
...-||+|+.++.. .|.+. ++..+.. +....|--. +.+.....|..++.++. .+--+-|..+|+-.++|
T Consensus 99 ~~~FFDiETTGL~~-ag~~I~~~g~a~~~~~~~~Vrq~~lp~p~~E~avle~fl~~~~~~~lvsfNGkaFD~PfikR~v~ 177 (278)
T COG3359 99 DVAFFDIETTGLDR-AGNTITLVGGARGVDDTMHVRQHFLPAPEEEVAVLENFLHDPDFNMLVSFNGKAFDIPFIKRMVR 177 (278)
T ss_pred ceEEEeeeccccCC-CCCeEEEEEEEEccCceEEEEeecCCCcchhhHHHHHHhcCCCcceEEEecCcccCcHHHHHHHh
Confidence 46789999999887 55443 4444432 223333221 12233446666777763 33345556789988873
Q ss_pred h-cCCccc-ccchHHHHHHHCC---CCCCcHHHHHHHHcCCCCCcc---c---c-cccCCCCC---CCHHHHHHHHHHHH
Q psy15183 1856 D-FGLYVV-GMFDTHQACKFLP---MPRQSLAYLLKHYCDVDSDKT---F---Q-LFDWRHRP---LPEPAIQYARTDTH 1920 (1973)
Q Consensus 1856 ~-~GI~l~-nlfDT~lAayLL~---~~~~sLa~La~~yLg~~l~K~---~---q-~sdW~~RP---Ls~eqi~YAa~DA~ 1920 (1973)
+ +...+. +-||++..++-|. .++-+|..+=+ +||+.-... + . .-.|+.-+ +-...+.|-..|+.
T Consensus 178 ~~~el~l~~~H~DL~h~~RRlwk~~l~~c~Lk~VEr-~LGi~R~edtdG~~~p~lyr~~~~~~dp~ll~~l~~hN~eDvl 256 (278)
T COG3359 178 DRLELSLEFGHFDLYHPSRRLWKHLLPRCGLKTVER-ILGIRREEDTDGYDGPELYRLYRRYGDPGLLDGLVLHNREDVL 256 (278)
T ss_pred cccccCccccchhhhhhhhhhhhccCCCCChhhHHH-HhCccccccCCCcchHHHHHHHHHcCCHHHHHHHHHccHHHHH
Confidence 1 222232 4699999999987 45668886544 999753210 0 0 01243221 11233467778888
Q ss_pred HHHHHHHHHHHHHHHh
Q psy15183 1921 YLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1921 ~LL~Lyd~L~~eL~e~ 1936 (1973)
-+..|+..+...+.+.
T Consensus 257 nL~~i~~h~~~~i~~~ 272 (278)
T COG3359 257 NLPTIIKHVSKKILED 272 (278)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8888888887776543
No 246
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=51.69 E-value=16 Score=44.78 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=22.9
Q ss_pred hhh-hcCCCCceEEEEeeCCCceEEEEeecCEEcc
Q psy15183 1004 SYQ-YNGWEGQSGVIISCGYQCTHVIPVINGCIDA 1037 (1973)
Q Consensus 1004 S~y-a~G~g~~tgLVVDiG~s~T~V~PV~dG~vl~ 1037 (1973)
+.| ..|. .++++||||.++|.|++|.||.+..
T Consensus 69 a~~~~~g~--~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 69 AAARLTGL--ENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHH--HT---SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhcCCC--CCEEEEeCCCCEEEEEEEECCeeec
Confidence 444 4455 8999999999999999999999863
No 247
>PRK06722 exonuclease; Provisional
Probab=51.65 E-value=1.9e+02 Score=35.47 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=50.6
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHHh---cCCccc-----ccchHHHHHHH-CC---CCCCcHHHHHHHHcCCCCCc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYVV-----GMFDTHQACKF-LP---MPRQSLAYLLKHYCDVDSDK 1895 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~GI~l~-----nlfDT~lAayL-L~---~~~~sLa~La~~yLg~~l~K 1895 (1973)
..+..++.+..+ |+|++.+|+..|.+. +|+... ..+|++-.++- .. ...++|..|+++| |++...
T Consensus 82 ~ef~~fig~~~l--vahna~FD~~FL~~~l~~~gi~~p~~~~~~~idl~~la~~~~~~l~~~~~sL~~l~~~l-gL~~~g 158 (281)
T PRK06722 82 EKFIQFIGEDSI--FVTWGKEDYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQL-GLIWEG 158 (281)
T ss_pred HHHHHHHCCCcE--EEEEeHHHHHHHHHHHHHcCCCCCcccccchhHHHHHHHHHhhhhccCCCCHHHHHHHC-CCCCCC
Confidence 455666765333 667789999988753 455432 23677654322 21 2345899999876 544321
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1896 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 1930 (1973)
Q Consensus 1896 ~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~ 1930 (1973)
.. +-|-.||..+..|+..|.
T Consensus 159 ~~---------------HrAL~DA~~TA~L~l~l~ 178 (281)
T PRK06722 159 KQ---------------HRALADAENTANILLKAY 178 (281)
T ss_pred CC---------------cCcHHHHHHHHHHHHHHh
Confidence 11 126678888888887776
No 248
>PRK13321 pantothenate kinase; Reviewed
Probab=50.77 E-value=1.5e+02 Score=35.67 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=16.0
Q ss_pred EEEEcCcceEEEEEeCCC
Q psy15183 871 IVFDNGAWCCRVGWASCE 888 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age~ 888 (1973)
|.||+|..++|+|+..++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998654
No 249
>KOG2248|consensus
Probab=49.70 E-value=56 Score=41.56 Aligned_cols=83 Identities=25% Similarity=0.201 Sum_probs=53.8
Q ss_pred HHHHHHcCCCceeeecchhHhHHHHHHHhCCcccceeehhhhhhh-cC-CC-CccHHHHHHHHcCCCCCcccccccCCCC
Q psy15183 384 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKF-LP-MP-RQSLAYLLKHYCDVDSDKTFQLFDWRHR 460 (1973)
Q Consensus 384 ~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~l-Lg-~~-~~sLa~Lv~~ylgv~ldK~~q~sDW~~R 460 (1973)
.|.. |-+++-+-|||+.-.|+..|... -..+.||.+.-.. .| ++ ..+|..|++.|+|..+.-....
T Consensus 286 ~l~~-~~~~~TILVGHSLenDL~aLKl~----H~~ViDTa~lf~~~~g~~~~k~sLk~L~~~~L~~~Iq~~~~~------ 354 (380)
T KOG2248|consen 286 ELLE-LISKNTILVGHSLENDLKALKLD----HPSVIDTAVLFKHPTGPYPFKSSLKNLAKSYLGKLIQEGVGG------ 354 (380)
T ss_pred HHHh-hcCcCcEEEeechhhHHHHHhhh----CCceeeeeEEEecCCCCccchHHHHHHHHHHHHHHHhccCCC------
Confidence 4566 44555566999999999999543 3467799743322 23 23 3579999999999766511110
Q ss_pred CCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 461 PLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 461 PLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
+=..+||+..+.|....
T Consensus 355 -------HdS~eDA~acm~Lv~~k 371 (380)
T KOG2248|consen 355 -------HDSVEDALACMKLVKLK 371 (380)
T ss_pred -------CccHHHHHHHHHHHHHH
Confidence 11568888887776554
No 250
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal proteins. B1 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B1displays thermostable polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family-B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Family-B DNA polymerases from thermophilic archaea are uniq
Probab=49.21 E-value=1.9e+02 Score=33.75 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCCceeeecch-hHhHHHHHH---HhCCc----------------ccceeehhhhhh--h-----c--CCC
Q psy15183 382 LEVLNEVLTDKNIVKVFHGA-DSDIKWLQK---DFGLY----------------VVGMFDTHQACK--F-----L--PMP 432 (1973)
Q Consensus 382 l~~L~~lL~dp~I~KV~H~a-k~Dl~~L~r---~~Gi~----------------~~nlFDT~lAA~--l-----L--g~~ 432 (1973)
+..+.+++.+.. .-|++|. .+|+..|.. .+|+. ....+|++.... . . ..+
T Consensus 77 L~~F~~~i~~~~-~iig~N~~~FDlpyl~~R~~~~gi~~~~~~~~~~~~~~~~~g~~~iDl~~~~~~~~~~~~~~~~~~~ 155 (204)
T cd05783 77 IREAFKIISEYP-IVLTFNGDNFDLPYLYNRALKLGIPKEEIPIYLKRDYATLKHGIHIDLYKFFSNRAIQVYAFGNKYR 155 (204)
T ss_pred HHHHHHHHhcCC-EEEEeCCCCcCHHHHHHHHHHhCCChhhCceeecCCceeccCcEEeECHHHhhccchhhhhhccccc
Confidence 456666777664 3467876 589988764 35655 012367755322 1 1 235
Q ss_pred CccHHHHHHHHcCCCC-CcccccccCCCCCCCchhHhHHHHhHHHHHHHHH
Q psy15183 433 RQSLAYLLKHYCDVDS-DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 482 (1973)
Q Consensus 433 ~~sLa~Lv~~ylgv~l-dK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d 482 (1973)
+++|..+++.++|..- +-..+. |... ..+.+.|+..||..++.|..
T Consensus 156 ~~~L~~Va~~~lg~~K~~~~~~i--~~~~--~~~l~~Y~~~D~~lt~~L~~ 202 (204)
T cd05783 156 EYTLDAVAKALLGEGKVELEKNI--SELN--LYELAEYNYRDAELTLELTT 202 (204)
T ss_pred cCcHHHHHHHhcCCCcccCCchh--hhhc--HHHHHHhhHHHHHHHHHHhc
Confidence 7899999999998632 111111 2221 24566999999999988753
No 251
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins. This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional ho
Probab=47.86 E-value=3e+02 Score=30.51 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=50.8
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHH---hcCC-----cccccchHHHHHHHC-CC-CCCcHHHHHHHHcCCCCCccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQK---DFGL-----YVVGMFDTHQACKFL-PM-PRQSLAYLLKHYCDVDSDKTF 1897 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr---~~GI-----~l~nlfDT~lAayLL-~~-~~~sLa~La~~yLg~~l~K~~ 1897 (1973)
..|.+++.+..-..+.|+..+|...+.+ .++. .....+|++..+..+ +. ...+|..++.+| |+....
T Consensus 80 ~~~~~~l~~~~~~~~v~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~L~~l~~~~-gi~~~~-- 156 (176)
T cd06133 80 KEFLEWLGKNGKYAFVTWGDWDLKDLLQNQCKYKIINLPPFFRQWIDLKKEFAKFYGLKKRTGLSKALEYL-GLEFEG-- 156 (176)
T ss_pred HHHHHHHHhCCCeEEEeecHhhHHHHHHHHHHhcCCCCcccccceEEHHHHHHHHhCCCCCCCHHHHHHHC-CCCCCC--
Confidence 4566677664112344455788654432 2333 123578998765544 43 477999998665 655431
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1898 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCM 1929 (1973)
Q Consensus 1898 q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L 1929 (1973)
+. +-|-.||.++..|+..|
T Consensus 157 ~~-------------H~Al~DA~~~a~l~~~~ 175 (176)
T cd06133 157 RH-------------HRGLDDARNIARILKRL 175 (176)
T ss_pred CC-------------cCcHHHHHHHHHHHHHh
Confidence 11 22667998888888765
No 252
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=46.10 E-value=12 Score=46.82 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=40.9
Q ss_pred EEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceecccccccc
Q psy15183 1402 IFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLS 1454 (1973)
Q Consensus 1402 IvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl 1454 (1973)
||++||++...|+..-|...|. .+|..+++|++..-+||+++++-
T Consensus 346 iv~~GGva~n~av~~ale~~lg--------~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG--------RKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC--------CeeecCCccchhhHHHHHHHHhh
Confidence 9999999999999999998874 58999999999999999988753
No 253
>PRK06722 exonuclease; Provisional
Probab=44.69 E-value=1.5e+02 Score=36.49 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=51.9
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHH---hCCcccc-----eeehhhhhh-hcC---CCCccHHHHHHHHcCCCCCc
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLYVVG-----MFDTHQACK-FLP---MPRQSLAYLLKHYCDVDSDK 450 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~---~Gi~~~n-----lFDT~lAA~-lLg---~~~~sLa~Lv~~ylgv~ldK 450 (1973)
..|.+++.+..+ |+|++.+|+..|.+. +|+.... .+|++-.++ +.. ....+|..|++.| |+....
T Consensus 82 ~ef~~fig~~~l--vahna~FD~~FL~~~l~~~gi~~p~~~~~~~idl~~la~~~~~~l~~~~~sL~~l~~~l-gL~~~g 158 (281)
T PRK06722 82 EKFIQFIGEDSI--FVTWGKEDYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEELFEHTPSLQSAVEQL-GLIWEG 158 (281)
T ss_pred HHHHHHHCCCcE--EEEEeHHHHHHHHHHHHHcCCCCCcccccchhHHHHHHHHHhhhhccCCCCHHHHHHHC-CCCCCC
Confidence 456666765433 667789999998764 4443221 256653322 221 1236899998875 554321
Q ss_pred ccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHH
Q psy15183 451 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 486 (1973)
Q Consensus 451 ~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~ 486 (1973)
..+=|-.||..+..|+..|..
T Consensus 159 ---------------~~HrAL~DA~~TA~L~l~l~~ 179 (281)
T PRK06722 159 ---------------KQHRALADAENTANILLKAYS 179 (281)
T ss_pred ---------------CCcCcHHHHHHHHHHHHHHhc
Confidence 112377899999888888763
No 254
>KOG0100|consensus
Probab=44.68 E-value=1.5e+02 Score=37.53 Aligned_cols=100 Identities=14% Similarity=0.077 Sum_probs=65.9
Q ss_pred hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCC----CCceEEEEeeCCCceEE-
Q psy15183 953 HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGW----EGQSGVIISCGYQCTHV- 1027 (1973)
Q Consensus 953 ~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~----g~~tgLVVDiG~s~T~V- 1027 (1973)
+||-.-. ..++|.|.++...+|+..-.-= ---|..-+-+.+.+.+|+.++|. |..+-||.|+|.++-.|
T Consensus 167 yLGkkv~-----~AVvTvPAYFNDAQrQATKDAG-tIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVS 240 (663)
T KOG0100|consen 167 YLGKKVT-----HAVVTVPAYFNDAQRQATKDAG-TIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVS 240 (663)
T ss_pred HhCCccc-----ceEEecchhcchHHHhhhcccc-eeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEE
Confidence 5665443 5678888888888887643210 01244556778888888888877 35788999999998655
Q ss_pred -EEeecCEE-ccCCcEEeeccHHHHHHHHHHHH
Q psy15183 1028 -IPVINGCI-DASKAKRIDLGGFSVIHHLHKLL 1058 (1973)
Q Consensus 1028 -~PV~dG~v-l~~si~rl~vGG~~lt~~L~~lL 1058 (1973)
+-|-+|.- +..+.--..+||.+.+...++.+
T Consensus 241 lLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 241 LLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred EEEEcCceEEEEecCCCcccCccchHHHHHHHH
Confidence 45566652 12233355789998877655544
No 255
>KOG3657|consensus
Probab=43.24 E-value=45 Score=45.22 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=67.4
Q ss_pred CceeeecchhHhHHHHHHHhCCccc-c-eeehhhhhhhc--------------------------------------CCC
Q psy15183 393 NIVKVFHGADSDIKWLQKDFGLYVV-G-MFDTHQACKFL--------------------------------------PMP 432 (1973)
Q Consensus 393 ~I~KV~H~ak~Dl~~L~r~~Gi~~~-n-lFDT~lAA~lL--------------------------------------g~~ 432 (1973)
.-+.||||..+|-..+...|.|.-. + +.|||-.+-.. +..
T Consensus 241 e~liVGHNVsfDRaRirEeY~i~~Sk~rFlDTMSlHia~~Gm~S~Qrplw~ka~k~k~a~~d~~~~ps~~d~~~pWL~~S 320 (1075)
T KOG3657|consen 241 EQLIVGHNVSFDRARIREEYNINGSKIRFLDTMSLHIAMSGMCSRQRPLWFKARKAKSAMYDSETNPSISDYDNPWLGRS 320 (1075)
T ss_pred CceEEeccccchHHHHHHHHhccccceeeeechhhhhhhhccccccchhHhhhhhhhhhhhhcccCCchhhhhhhhhhhh
Confidence 3566999999999999888887753 3 35997543211 111
Q ss_pred -CccHHHHHHHHcCCC-CCcccccccCCCCCCCchh--------HhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 433 -RQSLAYLLKHYCDVD-SDKTFQLFDWRHRPLPEPA--------IQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 433 -~~sLa~Lv~~ylgv~-ldK~~q~sDW~~RPLs~eq--------l~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
-.||.++...|||.+ ++|... .++-. .+.++ +.|.|.|+..+.++|..+-....++-
T Consensus 321 S~NSL~dVhk~~c~~~~LdKt~R-d~Fvs--~~~e~Ire~fq~L~~YCA~Dv~aThqVf~~lfP~Flerc 387 (1075)
T KOG3657|consen 321 SLNSLVDVHKFHCGIDALDKTPR-DSFVS--GTKEQIRENFQPLMNYCARDVIATHQVFFRLFPLFLERC 387 (1075)
T ss_pred hhHHHHHHHHhhCCCCccccchH-Hhhhc--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHhC
Confidence 136778888899988 666442 22222 23333 48999999999999999998888764
No 256
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=42.45 E-value=16 Score=43.23 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.3
Q ss_pred CceEEEEeeCCCceEEEEeecCE
Q psy15183 1012 GQSGVIISCGYQCTHVIPVINGC 1034 (1973)
Q Consensus 1012 ~~tgLVVDiG~s~T~V~PV~dG~ 1034 (1973)
+.+|+.||+|..+|.|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 36899999999999999999996
No 257
>PRK05762 DNA polymerase II; Reviewed
Probab=42.25 E-value=2.4e+02 Score=39.69 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=62.2
Q ss_pred HHHHHHHHc--CCCceEeecch-HHHHHHHHH---hcCCcc-------------------------cc--cchHHHHHHH
Q psy15183 1827 LEVLNEVLT--DKNIVKVFHGA-DSDIKWLQK---DFGLYV-------------------------VG--MFDTHQACKF 1873 (1973)
Q Consensus 1827 l~~L~~lLe--dp~I~KV~Hg~-K~Di~~Lqr---~~GI~l-------------------------~n--lfDT~lAayL 1873 (1973)
+..+..++. ||+|+ +|||. .+|+..|.+ .+|+.+ .+ ++|++...+-
T Consensus 207 L~~F~~~i~~~DPDII-vGyNi~~FDlpyL~~Ra~~lgi~~~~GR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~~k~ 285 (786)
T PRK05762 207 LEKFNAWFAEHDPDVI-IGWNVVQFDLRLLQERAERYGIPLRLGRDGSELEWREHPFRSGYGFASVPGRLVLDGIDALKS 285 (786)
T ss_pred HHHHHHHHHhcCCCEE-EEeCCCCCcHHHHHHHHHHhCCCcccCcCCCccccccCCCCCCcceEEEeeEEEEEHHHHHHH
Confidence 344444443 57765 89996 468877642 244432 11 4577776554
Q ss_pred C--CCCCCcHHHHHHHHcCCCCCc--c----cccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1874 L--PMPRQSLAYLLKHYCDVDSDK--T----FQLF-DWRHRPLPEPAIQYARTDTHYLLYVYDCM 1929 (1973)
Q Consensus 1874 L--~~~~~sLa~La~~yLg~~l~K--~----~q~s-dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L 1929 (1973)
. ..++++|+.+++++||..... . .+.. -|... ....+.|...||..++.|+.++
T Consensus 286 ~~~~l~sysL~~Va~~~Lg~~K~~~d~~~~~~eI~~~~~~~--~~~l~~Y~l~Da~lt~~L~~kl 348 (786)
T PRK05762 286 ATWVFDSFSLEYVSQRLLGEGKAIDDPYDRMDEIDRRFAED--KPALARYNLKDCELVTRIFEKT 348 (786)
T ss_pred hhccCCCCCHHHHHHHHhCCCeeccCccccHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3 457889999999999854211 0 1111 13321 2556799999999999999843
No 258
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair]
Probab=41.53 E-value=2.2e+02 Score=34.09 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=85.9
Q ss_pred CeEEEEeeeccCCccCCcEEEEEEEeCC-ceEEEEcc---CccccHHHHHHHHcCCC--ceeeecchhHhHHHHHH---H
Q psy15183 341 QEIAIDLEYHNYRSYQGYTCLMQISTRD-KDYIVDTL---KLREDLEVLNEVLTDKN--IVKVFHGADSDIKWLQK---D 411 (1973)
Q Consensus 341 ~~IavDtE~~~~~s~~g~l~LIQIst~~-~~~lID~l---~l~~~l~~L~~lL~dp~--I~KV~H~ak~Dl~~L~r---~ 411 (1973)
...-||+|+.+++.....+.++..+... ....|--. +.+.....|..++.+++ ...-+-|..+|+-.++| +
T Consensus 99 ~~~FFDiETTGL~~ag~~I~~~g~a~~~~~~~~Vrq~~lp~p~~E~avle~fl~~~~~~~lvsfNGkaFD~PfikR~v~~ 178 (278)
T COG3359 99 DVAFFDIETTGLDRAGNTITLVGGARGVDDTMHVRQHFLPAPEEEVAVLENFLHDPDFNMLVSFNGKAFDIPFIKRMVRD 178 (278)
T ss_pred ceEEEeeeccccCCCCCeEEEEEEEEccCceEEEEeecCCCcchhhHHHHHHhcCCCcceEEEecCcccCcHHHHHHHhc
Confidence 4778999999998733344444444332 22333211 11223346666777763 33334556799998863 1
Q ss_pred -hCCcc-cceeehhhhhhhcC---CCCccHHHHHHHHcCCCCCc---cc----ccccCCCCC---CCchhHhHHHHhHHH
Q psy15183 412 -FGLYV-VGMFDTHQACKFLP---MPRQSLAYLLKHYCDVDSDK---TF----QLFDWRHRP---LPEPAIQYARTDTHY 476 (1973)
Q Consensus 412 -~Gi~~-~nlFDT~lAA~lLg---~~~~sLa~Lv~~ylgv~ldK---~~----q~sDW~~RP---Ls~eql~YAa~Da~~ 476 (1973)
+...+ ..=||++..++-|. .++-+|.. ++++||+.-.. ++ -.-.|..-+ +-.--+.|=..|+.-
T Consensus 179 ~~el~l~~~H~DL~h~~RRlwk~~l~~c~Lk~-VEr~LGi~R~edtdG~~~p~lyr~~~~~~dp~ll~~l~~hN~eDvln 257 (278)
T COG3359 179 RLELSLEFGHFDLYHPSRRLWKHLLPRCGLKT-VERILGIRREEDTDGYDGPELYRLYRRYGDPGLLDGLVLHNREDVLN 257 (278)
T ss_pred ccccCccccchhhhhhhhhhhhccCCCCChhh-HHHHhCccccccCCCcchHHHHHHHHHcCCHHHHHHHHHccHHHHHh
Confidence 23333 34589999999886 45567875 55599975321 00 001243321 112233667788888
Q ss_pred HHHHHHHHHHHHHHh
Q psy15183 477 LLYVYDCMKLDLSAA 491 (1973)
Q Consensus 477 Ll~L~d~L~~~L~e~ 491 (1973)
|..|+..+...+.+.
T Consensus 258 L~~i~~h~~~~i~~~ 272 (278)
T COG3359 258 LPTIIKHVSKKILED 272 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877766653
No 259
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins. This subfamily is composed of the N-terminal domain of Escherichia coli exonuclease I (ExoI) and similar proteins. ExoI is a monomeric enzyme that hydrolyzes single stranded DNA in the 3' to 5' direction. It plays a role in DNA recombination and repair. It primarily functions in repairing frameshift mutations. The N-terminal domain of ExoI is a DEDDh-type DnaQ-like 3'-5 exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The ExoI structure is unique among DnaQ family enzymes in that there is a large distance between the two metal ions required for catalysis and the catalytic histidine is oriented away from the active site.
Probab=38.71 E-value=79 Score=35.97 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=47.0
Q ss_pred HHHHHHcCCCceeeecc-hhHhHHHHHHHh---CCcc--------cceeehhhhhhhc---------------CCCCccH
Q psy15183 384 VLNEVLTDKNIVKVFHG-ADSDIKWLQKDF---GLYV--------VGMFDTHQACKFL---------------PMPRQSL 436 (1973)
Q Consensus 384 ~L~~lL~dp~I~KV~H~-ak~Dl~~L~r~~---Gi~~--------~nlFDT~lAA~lL---------------g~~~~sL 436 (1973)
.+..++..+...-|+|| +.+|+..|.+.+ |..+ ...+||.-.++++ +..+++|
T Consensus 75 ~~~~~~~~~~~~lVahn~~~FD~~fL~~~~~r~~~~~~~~~~~~~~~~~dtl~l~r~~~~~~~~~~~~~~~~~~~~~~~L 154 (183)
T cd06138 75 KIHRLFNTPGTCIVGYNNIRFDDEFLRFAFYRNLYDPYTWEWKNGNSRWDLLDVVRAYYALRPDGIVWPKNDDGKPSFKL 154 (183)
T ss_pred HHHHHHccCCCcEEeeCchhhHHHHHHHHHHHCCCcccceeccCCccccccHHHHHHHHhhChhhccCccccCCCcchhH
Confidence 45556654443458886 799999987544 3211 1235776444332 2335789
Q ss_pred HHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHH
Q psy15183 437 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYV 480 (1973)
Q Consensus 437 a~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L 480 (1973)
+.|+++| |+... ..+-|..||..+..|
T Consensus 155 ~~l~~~~-gi~~~----------------~~H~Al~Da~~ta~l 181 (183)
T cd06138 155 EDLAQAN-GIEHS----------------NAHDALSDVEATIAL 181 (183)
T ss_pred HHHHHHC-CCCcc----------------ccccHHHHHHHHHHH
Confidence 9999874 65431 123477888777554
No 260
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=37.52 E-value=1.6e+02 Score=36.03 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCC--C-CceEEEEeeCCCceEEEEee-cCEEccCCcEEeeccHHHH
Q psy15183 975 PNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGW--E-GQSGVIISCGYQCTHVIPVI-NGCIDASKAKRIDLGGFSV 1050 (1973)
Q Consensus 975 p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~--g-~~tgLVVDiG~s~T~V~PV~-dG~vl~~si~rl~vGG~~l 1050 (1973)
.+...+.+++-|=+.+|++.-.-+.++-+|..|.-. | ..--.|+|+|.++|...-|- +|.+. ...+-=+|..+
T Consensus 93 ~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mV 169 (332)
T PF08841_consen 93 DKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMV 169 (332)
T ss_dssp SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHH
T ss_pred ccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhh
Confidence 445567788999999999999999999999998854 1 23456899999999987774 55443 33445568889
Q ss_pred HHHHHHHHhhhCCCCCCCCCHHHHHHHHHH-heec
Q psy15183 1051 IHHLHKLLQLKYPSHINSITPSRSEELLWD-YGFV 1084 (1973)
Q Consensus 1051 t~~L~~lL~~k~~~~~~~~~~~~~e~iKe~-~c~v 1084 (1973)
|-.+..-|-.. +...+|+||.- .|.|
T Consensus 170 TmlI~sELGl~--------d~~lAE~IKkyPlaKV 196 (332)
T PF08841_consen 170 TMLINSELGLE--------DRELAEDIKKYPLAKV 196 (332)
T ss_dssp HHHHHHHCT-S---------HHHHHHHHHS-EEEE
T ss_pred HHHHHHhhCCC--------CHHHHHHhhhcchhhh
Confidence 88887776322 57789999874 4444
No 261
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=37.44 E-value=59 Score=30.59 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhHHHHhhh
Q psy15183 16 QESLDELIQYGTITPTLAMKVLLQFDKSINGAL 48 (1973)
Q Consensus 16 ~~~lde~~~~~~i~~~la~~vl~~fd~~~~~~l 48 (1973)
.+.||..|.+|.||++.|..+..++|.-+...-
T Consensus 21 K~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~ 53 (59)
T PF10925_consen 21 KQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQ 53 (59)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999877653
No 262
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=34.80 E-value=4.5e+02 Score=30.58 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=15.3
Q ss_pred EEEEcCcceEEEEEeCCC
Q psy15183 871 IVFDNGAWCCRVGWASCE 888 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age~ 888 (1973)
++||+|-..+|.|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 799999999999999666
No 263
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=34.75 E-value=2.9e+02 Score=33.42 Aligned_cols=20 Identities=15% Similarity=0.028 Sum_probs=16.7
Q ss_pred EEEEcCcceEEEEEeCCCCc
Q psy15183 871 IVFDNGAWCCRVGWASCEKP 890 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age~~P 890 (1973)
++||+|-.+++.|+..+...
T Consensus 3 L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 3 LLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred EEEEeCCCeEEEEEecCCeE
Confidence 79999999999999974433
No 264
>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III. Ribonuclease T is responsible for the end-turnover of tRNA,and removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria, and also exhibits 3' to 5' exonuclease activity.; PDB: 3CM6_A 3CM5_A 3CG7_A 1ZBU_B 1ZBH_A 1W0H_A 3NGY_C 2IS3_B 3NH1_C 3NH2_F ....
Probab=33.11 E-value=19 Score=38.72 Aligned_cols=81 Identities=26% Similarity=0.253 Sum_probs=48.4
Q ss_pred HHHHHHcCCCceeeecchhHhHHHHHHH---h-CCc---ccceeehhhhhhhc--CCCCccHHHHHHHHcCCCCCccccc
Q psy15183 384 VLNEVLTDKNIVKVFHGADSDIKWLQKD---F-GLY---VVGMFDTHQACKFL--PMPRQSLAYLLKHYCDVDSDKTFQL 454 (1973)
Q Consensus 384 ~L~~lL~dp~I~KV~H~ak~Dl~~L~r~---~-Gi~---~~nlFDT~lAA~lL--g~~~~sLa~Lv~~ylgv~ldK~~q~ 454 (1973)
.+.+++.. ...-|+||+.+|+.++.+. + +.. ...++|++...+.+ +....+|..|++.|.. .....
T Consensus 75 ~~~~~~~~-~~~~v~~n~~fd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~--- 149 (164)
T PF00929_consen 75 EFEEFLKK-NDILVGHNASFDIGFLRREDKRFLGKPIPKPNPFIDTLELARALFPNRKKYSLDDLAEYFGI-PFDGT--- 149 (164)
T ss_dssp HHHHHHHH-HTEEEETTCCHEEESSHHHHHHHHHHHHHHHHHECEEEEEHHHHHHHHHHHSHHHHHHHTTS-SSTST---
T ss_pred hhhhhhhc-ccccccccccchhhHHHHhhhhcccccccccchhhhhhHHHHHHhhccccCCHHHHHHHcCC-CCCCC---
Confidence 45556652 2445899988887554322 2 222 23467887665554 2334789999988753 22211
Q ss_pred ccCCCCCCCchhHhHHHHhHHHHHHHH
Q psy15183 455 FDWRHRPLPEPAIQYARTDTHYLLYVY 481 (1973)
Q Consensus 455 sDW~~RPLs~eql~YAa~Da~~Ll~L~ 481 (1973)
.+=|..||..+..||
T Consensus 150 ------------~H~Al~Da~~t~~l~ 164 (164)
T PF00929_consen 150 ------------AHDALDDARATAELF 164 (164)
T ss_dssp ------------TTSHHHHHHHHHHHH
T ss_pred ------------CcChHHHHHHHhCcC
Confidence 123889999998875
No 265
>PRK05762 DNA polymerase II; Reviewed
Probab=30.92 E-value=2.4e+02 Score=39.67 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=61.0
Q ss_pred HHHHHHHHc--CCCceeeecch-hHhHHHHHHH---hCCccc---------------------------ceeehhhhhhh
Q psy15183 382 LEVLNEVLT--DKNIVKVFHGA-DSDIKWLQKD---FGLYVV---------------------------GMFDTHQACKF 428 (1973)
Q Consensus 382 l~~L~~lL~--dp~I~KV~H~a-k~Dl~~L~r~---~Gi~~~---------------------------nlFDT~lAA~l 428 (1973)
+..|..++. ||.|+ ++||. .+|+..|.+. +|+... -++|++...+-
T Consensus 207 L~~F~~~i~~~DPDII-vGyNi~~FDlpyL~~Ra~~lgi~~~~GR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~~k~ 285 (786)
T PRK05762 207 LEKFNAWFAEHDPDVI-IGWNVVQFDLRLLQERAERYGIPLRLGRDGSELEWREHPFRSGYGFASVPGRLVLDGIDALKS 285 (786)
T ss_pred HHHHHHHHHhcCCCEE-EEeCCCCCcHHHHHHHHHHhCCCcccCcCCCccccccCCCCCCcceEEEeeEEEEEHHHHHHH
Confidence 344444444 47764 89996 4799887643 444310 13566655443
Q ss_pred c--CCCCccHHHHHHHHcCCCCCc--c----cccc-cCCCCCCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 429 L--PMPRQSLAYLLKHYCDVDSDK--T----FQLF-DWRHRPLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 429 L--g~~~~sLa~Lv~~ylgv~ldK--~----~q~s-DW~~RPLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
. ..++++|..+++++||..-.. . .+.. -|... .....+|...|+..++.|+..+
T Consensus 286 ~~~~l~sysL~~Va~~~Lg~~K~~~d~~~~~~eI~~~~~~~--~~~l~~Y~l~Da~lt~~L~~kl 348 (786)
T PRK05762 286 ATWVFDSFSLEYVSQRLLGEGKAIDDPYDRMDEIDRRFAED--KPALARYNLKDCELVTRIFEKT 348 (786)
T ss_pred hhccCCCCCHHHHHHHHhCCCeeccCccccHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHh
Confidence 2 456789999999999864211 0 1111 13322 2456799999999999998744
No 266
>PRK13318 pantothenate kinase; Reviewed
Probab=30.35 E-value=6.9e+02 Score=30.06 Aligned_cols=17 Identities=18% Similarity=0.138 Sum_probs=15.3
Q ss_pred EEEEcCcceEEEEEeCC
Q psy15183 871 IVFDNGAWCCRVGWASC 887 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age 887 (1973)
+.||+|...+|+|+..+
T Consensus 3 L~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEECCCcEEEEEEEC
Confidence 78999999999999863
No 267
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=29.97 E-value=2.9e+02 Score=35.62 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEe--echhhHHhhhhcCCCCceEEEE
Q psy15183 941 DIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVC--YGIDSLFSYQYNGWEGQSGVII 1018 (1973)
Q Consensus 941 d~le~i~~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~--~~~~sllS~ya~G~g~~tgLVV 1018 (1973)
+..+.+++.++...|+...+ -..+++| =+-|..+. .+ |+.+.+. +.-.+.-+.|-....+....|+
T Consensus 179 ~~a~~~l~~~l~~~Gl~~~d--i~~i~~T------GyGR~~i~-~~---~~ad~iv~EItaha~GA~~L~p~~~~v~TII 246 (404)
T TIGR03286 179 ESAEEAVERALEEAGVSLED--VEAIGTT------GYGRFTIG-EH---FGADLIQEELTVNSKGAVYLADKQEGPATVI 246 (404)
T ss_pred HHHHHHHHHHHHHcCCCccc--eeEEEee------eecHHHHh-hh---cCCCceEEEEhhHHHHHHHhcccCCCCcEEE
Confidence 45788888888887775441 1123332 23344442 22 3333221 1111112223222101467999
Q ss_pred eeCCCceEEEEeecCEEc
Q psy15183 1019 SCGYQCTHVIPVINGCID 1036 (1973)
Q Consensus 1019 DiG~s~T~V~PV~dG~vl 1036 (1973)
|||.+-+.++-+-+|.+.
T Consensus 247 DIGGQDsK~I~l~~G~v~ 264 (404)
T TIGR03286 247 DIGGMDNKAISVWDGIPD 264 (404)
T ss_pred EeCCCceEEEEEcCCcee
Confidence 999999999988888664
No 268
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=28.74 E-value=33 Score=43.08 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=32.5
Q ss_pred hcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceeccccccc
Q psy15183 1399 ANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSL 1453 (1973)
Q Consensus 1399 ~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilas 1453 (1973)
+.+|+||||+|.+ |.+.|++. +| ++...++|+++.-+|...++.
T Consensus 292 ~d~IiL~GGGA~l--l~~~lk~~----f~-----~~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 292 FDRVIVTGGGANI--FFDSLSHW----YS-----DVEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCEEEEECCcHHH--HHHHHHHH----cC-----CeEEcCChHHHHHHHHHHHHH
Confidence 5679999999987 55555543 34 246678999998888877765
No 269
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=26.83 E-value=10 Score=45.75 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=44.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceecccccc
Q psy15183 1378 GISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 1452 (1973)
Q Consensus 1378 gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSila 1452 (1973)
-|.+.|...+.++..... .|+|+||...-..+.+.|...|....+.. .+.....|.+.+..||.+||
T Consensus 205 ~la~~i~~~~~~~~~~~~-----~v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 205 ELAELIKAVLKRLGPEKE-----PVVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHTCTCCCC-----SEEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC-----eEEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 466666666666542111 19999999988888777766665544322 34455688999999998775
No 270
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=24.75 E-value=2.2e+02 Score=32.50 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.5
Q ss_pred cccCCcccCHHHHHHHHHHHHhhc
Q psy15183 931 QFDKNVVTHYDIQEQIFDYAFSHL 954 (1973)
Q Consensus 931 Pi~~G~V~dwd~le~i~~~if~~L 954 (1973)
-+++|.|.|.+...+.++.++..+
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~~a 59 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVEEA 59 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHHHH
Confidence 368999999999999999998655
No 271
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=22.27 E-value=6.6e+02 Score=30.18 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.7
Q ss_pred EEEEcCcceEEEEEeCCC
Q psy15183 871 IVFDNGAWCCRVGWASCE 888 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age~ 888 (1973)
++||+|-.++++|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987654
No 272
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=20.89 E-value=8.5e+02 Score=29.89 Aligned_cols=55 Identities=20% Similarity=0.095 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCCeEeechhhHHhhhh-----cCCCCceEEEEeeCCCceEEEEeecCEEccC
Q psy15183 982 MSELLFECYQVPSVCYGIDSLFSYQY-----NGWEGQSGVIISCGYQCTHVIPVINGCIDAS 1038 (1973)
Q Consensus 982 l~ElLFE~~~vpav~~~~~sllS~ya-----~G~g~~tgLVVDiG~s~T~V~PV~dG~vl~~ 1038 (1973)
+.+.|=+.|++| |++.+++-++++| .+.+..+.++|.+|.+. -..-|.+|.++..
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 556666788988 8888988887663 33234789999999765 6777889998853
Done!