Query psy15183
Match_columns 1973
No_of_seqs 1149 out of 4443
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:42:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 7.5E-67 2.6E-71 645.1 37.4 377 240-617 1-407 (428)
2 3dwl_A Actin-related protein 3 100.0 1.7E-67 5.9E-72 656.0 21.0 370 866-1481 3-423 (427)
3 3qb0_A Actin-related protein 4 100.0 9.1E-65 3.1E-69 637.1 29.4 363 866-1479 21-497 (498)
4 2hbj_A Exosome complex exonucl 100.0 2.5E-61 8.6E-66 596.9 32.8 371 240-616 2-390 (410)
5 4fo0_A Actin-related protein 8 100.0 1.9E-62 6.4E-67 637.4 21.9 441 868-1481 15-591 (593)
6 2fxu_A Alpha-actin-1, actin, a 100.0 4E-59 1.4E-63 574.0 30.7 368 867-1480 4-375 (375)
7 1k8k_B ARP2, actin-like protei 100.0 1.3E-60 4.6E-65 590.7 14.8 366 866-1477 4-388 (394)
8 1k8k_A ARP3, actin-like protei 100.0 5.1E-56 1.8E-60 553.7 30.3 375 866-1481 3-414 (418)
9 4am6_A Actin-like protein ARP8 100.0 2.2E-51 7.5E-56 517.2 22.5 217 866-1085 38-347 (655)
10 3saf_A Exosome component 10; e 100.0 6.5E-48 2.2E-52 476.4 28.9 287 1685-1972 1-316 (428)
11 2hbj_A Exosome complex exonucl 100.0 2.5E-43 8.6E-48 436.2 30.4 272 1685-1961 2-277 (410)
12 1yt3_A Ribonuclease D, RNAse D 100.0 2.4E-39 8.2E-44 398.0 33.1 286 320-614 2-288 (375)
13 3cym_A Uncharacterized protein 100.0 1.5E-37 5E-42 387.6 25.5 293 312-614 10-328 (440)
14 1nh2_D Transcription initiatio 99.9 2.2E-27 7.5E-32 239.3 6.2 80 1-81 4-87 (121)
15 1nvp_D Transcription initiatio 99.9 2.7E-27 9.4E-32 235.6 6.2 79 2-81 1-83 (108)
16 1jce_A ROD shape-determining p 99.9 1.6E-25 5.4E-30 271.8 22.6 205 869-1085 4-214 (344)
17 1vk0_A Hypothetical protein; h 99.9 1E-23 3.4E-28 237.9 12.9 164 322-486 22-205 (206)
18 2e6m_A Werner syndrome ATP-dep 99.9 2.8E-23 9.6E-28 235.2 15.6 174 320-493 16-200 (208)
19 1yt3_A Ribonuclease D, RNAse D 99.9 2.1E-22 7.3E-27 247.5 23.7 191 1765-1961 2-193 (375)
20 3cym_A Uncharacterized protein 99.9 1.1E-21 3.9E-26 244.8 22.9 207 1757-1972 10-221 (440)
21 2e6m_A Werner syndrome ATP-dep 99.9 6.9E-22 2.4E-26 223.8 17.6 172 1765-1936 16-198 (208)
22 1vk0_A Hypothetical protein; h 99.8 3.2E-21 1.1E-25 217.5 12.9 163 1768-1931 23-205 (206)
23 1nvp_D Transcription initiatio 99.8 5.3E-20 1.8E-24 183.5 -0.3 83 1454-1537 19-102 (108)
24 1nh2_D Transcription initiatio 99.7 2.9E-19 1E-23 180.5 0.1 83 1454-1537 23-120 (121)
25 2kfn_A Klenow fragment of DNA 99.7 1.1E-15 3.6E-20 198.7 19.2 182 319-508 5-208 (605)
26 3h1q_A Ethanolamine utilizatio 99.6 4.9E-15 1.7E-19 173.6 21.0 151 869-1059 29-183 (272)
27 2kfn_A Klenow fragment of DNA 99.6 7.8E-15 2.7E-19 190.6 19.8 179 1764-1946 5-205 (605)
28 3pv8_A DNA polymerase I; DNA p 99.6 2E-15 6.7E-20 194.1 13.0 181 313-508 9-195 (592)
29 2v7y_A Chaperone protein DNAK; 99.6 1.1E-15 3.6E-20 195.4 8.8 182 869-1061 3-212 (509)
30 3pv8_A DNA polymerase I; DNA p 99.5 2.8E-14 9.7E-19 183.5 14.3 177 1760-1947 11-193 (592)
31 1dkg_D Molecular chaperone DNA 99.5 2.8E-14 9.7E-19 175.5 13.6 180 870-1061 4-243 (383)
32 3qfu_A 78 kDa glucose-regulate 99.5 4.5E-14 1.5E-18 174.0 13.7 180 868-1060 18-256 (394)
33 3i33_A Heat shock-related 70 k 99.4 1.4E-12 4.9E-17 161.4 13.2 180 868-1060 23-264 (404)
34 1x9m_A DNA polymerase; DNA plo 99.3 2.1E-12 7E-17 170.3 7.0 147 343-492 2-187 (698)
35 1x9m_A DNA polymerase; DNA plo 99.2 1.6E-11 5.6E-16 161.8 8.9 147 1787-1936 1-186 (698)
36 4dfk_A DNA polymerase I, therm 99.1 7.6E-11 2.6E-15 150.3 9.0 132 341-508 11-143 (540)
37 1yuw_A Heat shock cognate 71 k 99.1 1.7E-09 5.9E-14 139.5 18.5 179 869-1060 5-243 (554)
38 2kho_A Heat shock protein 70; 99.0 2.2E-09 7.6E-14 139.8 16.8 180 870-1061 4-243 (605)
39 1wud_A ATP-dependent DNA helic 99.0 3.1E-10 1.1E-14 111.4 6.2 75 536-610 10-84 (89)
40 4gni_A Putative heat shock pro 99.0 5.3E-09 1.8E-13 129.8 16.7 115 941-1061 129-256 (409)
41 4dfk_A DNA polymerase I, therm 99.0 1.1E-09 3.6E-14 139.9 10.5 130 1786-1947 11-141 (540)
42 2rhf_A DNA helicase RECQ; HRDC 98.9 2.2E-09 7.6E-14 102.5 7.9 71 538-608 4-74 (77)
43 3d2f_A Heat shock protein homo 98.9 3.1E-08 1.1E-12 130.3 21.6 177 870-1060 4-247 (675)
44 2ych_A Competence protein PILM 98.9 3.9E-08 1.3E-12 120.6 19.7 94 980-1085 154-252 (377)
45 2kv2_A Bloom syndrome protein; 98.8 1.4E-08 4.8E-13 98.8 8.9 74 537-610 5-78 (85)
46 2rrd_A BLM HRDC domain, HRDC d 98.8 1.3E-08 4.3E-13 102.2 8.4 75 536-610 19-93 (101)
47 4b9q_A Chaperone protein DNAK; 98.7 4.9E-07 1.7E-11 117.8 20.9 181 869-1061 3-243 (605)
48 2fsj_A Hypothetical protein TA 98.6 1.3E-07 4.5E-12 115.1 14.2 178 870-1061 23-240 (346)
49 2dgz_A Werner syndrome protein 98.6 5.5E-08 1.9E-12 99.3 8.5 75 537-612 20-94 (113)
50 2e1f_A Werner syndrome ATP-dep 98.6 5.5E-08 1.9E-12 97.9 8.2 73 537-610 13-85 (103)
51 4a2a_A Cell division protein F 98.5 1.1E-05 3.9E-10 100.5 25.8 95 978-1084 169-266 (419)
52 1bgx_T TAQ DNA polymerase; DNA 98.0 7E-06 2.4E-10 109.8 9.6 129 1784-1946 303-432 (832)
53 1bgx_T TAQ DNA polymerase; DNA 98.0 5.6E-06 1.9E-10 110.7 8.4 130 339-507 303-434 (832)
54 3v9w_A Ribonuclease T; DEDD nu 98.0 2.3E-05 7.8E-10 90.1 11.4 154 324-493 21-226 (235)
55 3v9w_A Ribonuclease T; DEDD nu 97.9 3.3E-05 1.1E-09 88.7 11.7 156 1769-1942 21-228 (235)
56 3js6_A Uncharacterized PARM pr 97.7 0.00027 9.1E-09 86.3 14.5 185 870-1061 6-232 (355)
57 2zgy_A Plasmid segregation pro 97.4 0.00042 1.4E-08 83.1 10.5 193 870-1077 2-225 (320)
58 4apw_A ALP12; actin-like prote 97.3 0.00042 1.4E-08 83.7 9.8 178 870-1060 9-219 (329)
59 2p1j_A POLIII, DNA polymerase 96.6 0.0059 2E-07 67.5 10.1 136 338-492 10-180 (186)
60 1wlj_A Interferon stimulated g 96.4 0.025 8.6E-07 62.7 13.5 136 340-493 5-174 (189)
61 2f96_A Ribonuclease T; RNAse, 96.3 0.032 1.1E-06 63.4 13.8 85 393-493 126-218 (224)
62 3mxm_B Three prime repair exon 96.2 0.016 5.5E-07 66.9 10.8 93 382-490 105-217 (242)
63 2p1j_A POLIII, DNA polymerase 96.1 0.023 7.8E-07 62.8 11.2 135 1783-1936 10-179 (186)
64 3mxm_B Three prime repair exon 95.9 0.031 1.1E-06 64.5 11.2 93 1827-1935 105-217 (242)
65 1wlj_A Interferon stimulated g 95.6 0.054 1.9E-06 60.0 11.7 134 1785-1936 5-172 (189)
66 2f96_A Ribonuclease T; RNAse, 95.6 0.081 2.8E-06 60.1 13.3 83 1838-1936 126-216 (224)
67 3u3y_B Three prime repair exon 95.3 0.074 2.5E-06 63.6 12.0 91 383-489 106-216 (314)
68 1y97_A Three prime repair exon 95.0 0.068 2.3E-06 61.2 10.3 92 383-490 101-212 (238)
69 3u3y_B Three prime repair exon 94.9 0.14 4.9E-06 61.1 12.7 92 1828-1935 106-217 (314)
70 1y97_A Three prime repair exon 94.9 0.1 3.5E-06 59.7 11.1 93 1827-1935 100-212 (238)
71 2gui_A DNA polymerase III epsi 93.7 0.51 1.7E-05 52.1 13.2 88 383-487 87-184 (194)
72 2gui_A DNA polymerase III epsi 93.4 0.83 2.9E-05 50.4 14.3 88 1828-1932 87-184 (194)
73 2d0o_A DIOL dehydratase-reacti 92.0 0.49 1.7E-05 59.7 10.8 95 980-1085 371-468 (610)
74 1t6c_A Exopolyphosphatase; alp 91.7 0.65 2.2E-05 55.6 11.2 76 975-1054 95-177 (315)
75 3cer_A Possible exopolyphospha 91.5 0.44 1.5E-05 57.7 9.6 79 976-1054 101-191 (343)
76 1nbw_A Glycerol dehydratase re 90.4 0.74 2.5E-05 58.3 10.2 76 999-1085 392-470 (607)
77 2qxf_A Exodeoxyribonuclease I; 90.2 1.5 5.2E-05 55.4 13.1 131 338-487 7-200 (482)
78 1zbh_A 3'-5' exonuclease ERI1; 89.2 1.6 5.6E-05 51.7 11.7 90 383-488 158-263 (299)
79 1zbh_A 3'-5' exonuclease ERI1; 88.4 2.5 8.4E-05 50.2 12.4 90 1828-1933 158-263 (299)
80 2qxf_A Exodeoxyribonuclease I; 88.2 3.1 0.00011 52.6 13.7 87 1829-1932 87-200 (482)
81 1d8b_A SGS1 RECQ helicase; fiv 87.5 1.1 3.8E-05 42.6 6.8 57 541-597 8-64 (81)
82 1u6z_A Exopolyphosphatase; alp 87.3 2.6 9.1E-05 53.7 12.6 159 868-1054 11-176 (513)
83 3mdq_A Exopolyphosphatase; str 86.6 2.1 7E-05 51.3 10.3 77 976-1054 88-170 (315)
84 1w0h_A 3'-5' exonuclease ERI1; 85.8 2 6.9E-05 47.5 9.2 88 384-487 91-194 (204)
85 3hi0_A Putative exopolyphospha 85.5 3.5 0.00012 52.5 12.3 152 868-1053 15-178 (508)
86 1w0h_A 3'-5' exonuclease ERI1; 83.9 4.1 0.00014 45.0 10.6 88 1829-1932 91-194 (204)
87 2xri_A ERI1 exoribonuclease 3; 82.9 6 0.00021 44.7 11.6 85 1828-1931 109-212 (224)
88 4ehu_A Activator of 2-hydroxyi 82.5 0.51 1.7E-05 55.0 2.5 67 1377-1453 187-253 (276)
89 1zbu_A ERI-1 homolog, 3'-5' ex 81.8 3.4 0.00012 50.1 9.5 90 383-488 208-313 (349)
90 1zbu_A ERI-1 homolog, 3'-5' ex 81.0 4.6 0.00016 49.0 10.2 90 1828-1933 208-313 (349)
91 1qht_A Protein (DNA polymerase 79.4 15 0.00053 49.1 15.4 147 1784-1931 134-328 (775)
92 2xri_A ERI1 exoribonuclease 3; 79.3 5.4 0.00018 45.1 9.5 85 383-486 109-212 (224)
93 3cg7_A CRN-4, cell death-relat 74.9 6.2 0.00021 47.0 8.7 85 384-486 101-207 (308)
94 1noy_A Protein (DNA polymerase 74.0 15 0.00052 45.0 12.1 64 1864-1929 267-335 (388)
95 4gmj_B CCR4-NOT transcription 73.0 29 0.001 40.8 13.6 85 390-490 147-247 (285)
96 2igi_A Oligoribonuclease; RNAs 72.5 22 0.00075 38.3 11.8 84 383-488 86-177 (180)
97 1qht_A Protein (DNA polymerase 67.7 31 0.0011 46.2 13.9 145 339-484 134-326 (775)
98 3cg7_A CRN-4, cell death-relat 66.8 16 0.00056 43.4 9.9 86 1829-1932 101-208 (308)
99 3djc_A Type III pantothenate k 66.1 75 0.0026 37.0 15.0 19 870-888 4-22 (266)
100 3aap_A Ectonucleoside triphosp 64.6 25 0.00087 42.6 11.1 36 1013-1048 140-177 (353)
101 3cet_A Conserved archaeal prot 64.0 4.3 0.00015 48.7 4.1 25 1013-1037 127-151 (334)
102 2h3g_X Biosynthetic protein; p 63.9 55 0.0019 38.1 13.3 18 871-888 3-20 (268)
103 2gbz_A Oligoribonuclease; ORN, 61.1 32 0.0011 37.8 10.2 85 384-490 91-183 (194)
104 1noy_A Protein (DNA polymerase 60.3 27 0.00091 42.8 10.4 99 383-484 196-335 (388)
105 2igi_A Oligoribonuclease; RNAs 59.3 91 0.0031 33.4 13.4 82 1828-1933 86-177 (180)
106 3ikm_A DNA polymerase subunit 59.0 6.6 0.00023 53.1 4.8 96 1839-1935 195-349 (1172)
107 2ews_A Pantothenate kinase; PA 58.6 5 0.00017 47.3 3.3 71 1377-1452 214-286 (287)
108 4gmj_B CCR4-NOT transcription 56.5 1.2E+02 0.0042 35.6 14.5 85 1835-1935 147-247 (285)
109 2gbz_A Oligoribonuclease; ORN, 55.7 78 0.0027 34.6 12.2 85 1829-1935 91-183 (194)
110 4apw_A ALP12; actin-like prote 49.2 2.7 9.3E-05 50.4 -1.0 46 1398-1453 278-323 (329)
111 2zgy_A Plasmid segregation pro 46.0 4.7 0.00016 47.9 0.4 47 1399-1452 273-319 (320)
112 2py5_A DNA polymerase; protein 45.0 1.5E+02 0.0052 38.2 14.1 134 340-483 6-179 (575)
113 2i7n_A Pantothenate kinase 1; 39.1 17 0.00057 44.3 3.6 74 1377-1452 283-358 (360)
114 3k59_A POL II, DNA polymerase 37.2 1.5E+02 0.0051 39.7 12.5 91 1836-1929 219-349 (786)
115 1hux_A Activator of (R)-2-hydr 36.2 8.9 0.0003 44.6 0.6 54 1400-1461 210-263 (270)
116 1s5j_A DNA polymerase I; repli 36.1 2.5E+02 0.0084 38.0 14.5 98 1826-1927 260-387 (847)
117 2qm1_A Glucokinase; alpha-beta 36.1 1.9E+02 0.0065 33.7 12.2 68 1379-1453 250-320 (326)
118 3ikm_A DNA polymerase subunit 32.2 22 0.00076 48.2 3.4 98 394-492 195-351 (1172)
119 3bex_A Type III pantothenate k 32.2 4.2E+02 0.015 30.2 13.8 19 870-888 5-23 (249)
120 1nbw_A Glycerol dehydratase re 30.8 24 0.00083 45.0 3.2 44 1400-1448 552-600 (607)
121 2py5_A DNA polymerase; protein 30.0 3.7E+02 0.013 34.6 14.1 130 1785-1930 6-181 (575)
122 3js6_A Uncharacterized PARM pr 29.0 6.1 0.00021 48.0 -2.5 45 1398-1454 290-336 (355)
123 1s5j_A DNA polymerase I; repli 28.9 2.8E+02 0.0095 37.5 13.2 98 382-483 261-388 (847)
124 2d0o_A DIOL dehydratase-reacti 28.8 24 0.00083 44.9 2.7 45 1400-1449 550-599 (610)
125 3d45_A Poly(A)-specific ribonu 28.4 1.2E+02 0.004 38.6 8.9 103 384-489 267-393 (507)
126 4ehu_A Activator of 2-hydroxyi 27.2 1.5E+02 0.0052 33.8 9.1 66 996-1061 75-143 (276)
127 2fsj_A Hypothetical protein TA 26.1 12 0.00042 45.0 -0.6 47 1398-1453 296-343 (346)
128 3zx3_A Ectonucleoside triphosp 25.5 1E+02 0.0036 38.5 7.6 105 941-1047 89-217 (452)
129 3tr8_A Oligoribonuclease; tran 23.5 2.3E+02 0.0078 31.0 9.1 20 340-359 9-28 (186)
130 2a1r_A Poly(A)-specific ribonu 23.3 1.6E+02 0.0055 36.6 8.7 105 385-489 273-398 (430)
131 2yhw_A Bifunctional UDP-N-acet 21.3 2.4E+02 0.0082 33.3 9.5 53 984-1038 125-182 (343)
132 2d5r_A CCR4-NOT transcription 20.5 1.8E+02 0.0063 33.5 7.7 83 391-489 138-236 (252)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=7.5e-67 Score=645.08 Aligned_cols=377 Identities=51% Similarity=0.895 Sum_probs=356.8
Q ss_pred CCCCcccccCcCCCCCCCCCCcccCCcCCCCCChhhHhhhhcc-----------------------------CCCCCCCC
Q psy15183 240 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD-----------------------------AIESFCHP 290 (1973)
Q Consensus 240 ~i~kPQ~~f~~~~dn~~~~pf~p~l~~Kp~a~~~l~~~~~~~~-----------------------------~~~~~~hP 290 (1973)
.|.|||++|+++||||+ +||+|+|++||||++||+.++.... ....|+||
T Consensus 1 ~i~~pq~~f~~~~dn~~-~p~~p~~~~kp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp 79 (428)
T 3saf_A 1 SIIRPQLKFREKIDNSN-TPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHP 79 (428)
T ss_dssp CCCCGGGGCSSCCCCSS-SCCCCCCCCCTTCSSCCCGGGSGGGC-----------------------------CCSSSCT
T ss_pred CCCCchhccCCCCCCCC-CCCCCccCCCCcccCCHHHHhhhhhhcccccCcccccccchhhhccccccccccCCCCCCCC
Confidence 48999999999999998 8999999999999999998765321 24579999
Q ss_pred cHHHhccCCCCccccccCCCCCCCCCCCCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCce
Q psy15183 291 YEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD 370 (1973)
Q Consensus 291 y~~ei~~~~~~~~~~~~~~p~~~~p~~~~~~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~ 370 (1973)
|++||.+++||+++++..+|.++.|+++++|.+|+|.++|.++++.+..++.+|||+|+++.+++.+.+|+|||++.+++
T Consensus 80 y~~ei~~~~~~~~~~~~~~~~~~~p~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~ 159 (428)
T 3saf_A 80 YQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTED 159 (428)
T ss_dssp THHHHHTCCCCHHHHSCCCCCCCCCGGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTTCSSCEEEEEEEECSSCE
T ss_pred hHHHHhcCCCCHHHhCcCCCCCCCCCCCCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCccccHHHHHHHHcCCCceeeecchhHhHHHHHHHhCCcccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCc
Q psy15183 371 YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDK 450 (1973)
Q Consensus 371 ~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK 450 (1973)
|+||++.++..+..|+++|+|++|.||+||+++|+.+|++.+|+.+.++||||+|+|+||.+++||++|+++|||+.++|
T Consensus 160 ~lidpl~l~~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 160 FIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp EEEETTTTGGGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred EEEEeccchhhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCc
Confidence 99999998667789999999999999999999999999889999999999999999999988899999999999999999
Q ss_pred ccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHh
Q psy15183 451 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRS 530 (1973)
Q Consensus 451 ~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g~~~~~~l~~v~~e~e~~~~~~y~~~~~~~~~~~~~~~k 530 (1973)
+.+.+||+.|||+++|+.|||.||++++.||+.|..+|.+.|+...+|+.+++++++.+|.++|+++.++.+.|.+++++
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRK 319 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHHHHT
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999875556999999999999999999888888899999988
Q ss_pred hc-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHH
Q psy15183 531 HA-LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 609 (1973)
Q Consensus 531 ~~-~l~~~ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~ 609 (1973)
.+ .++++|+++|++|++||+++||++|+|+++||+|+.|++||+.+|+|.++|.+++++.++.+|+|+++|+++|++|+
T Consensus 320 ~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~~a~ 399 (428)
T 3saf_A 320 QKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAR 399 (428)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHHHHH
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 76 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCc
Q psy15183 610 LQSLTKPV 617 (1973)
Q Consensus 610 ~~~~~~~~ 617 (1973)
+.|...+.
T Consensus 400 ~~p~~~~~ 407 (428)
T 3saf_A 400 EMPLLKSE 407 (428)
T ss_dssp TSCCCHHH
T ss_pred hCCCcCcc
Confidence 98887543
No 2
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-67 Score=655.97 Aligned_cols=370 Identities=22% Similarity=0.383 Sum_probs=314.0
Q ss_pred CCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCC-------------------------CCccccceecccccc
Q psy15183 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER-------------------------GKKDGETQVGNDISN 920 (1973)
Q Consensus 866 ~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~-------------------------~~~~~~~~vGdea~~ 920 (1973)
...++||||+||++|||||||++.|+++|||+||+++... +....+++||+++..
T Consensus 3 ~~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~ 82 (427)
T 3dwl_A 3 SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALK 82 (427)
T ss_dssp CCCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHH
T ss_pred CCCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhh
Confidence 3567999999999999999999999999999999998541 111236799999988
Q ss_pred ccccccEEeecccCCcccCHHHHHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeech
Q psy15183 921 IEAVRFQLKTQFDKNVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGI 999 (1973)
Q Consensus 921 ~~~~~~~l~~Pi~~G~V~dwd~le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~ 999 (1973)
.....+.+++||++|+|+|||++|.+|+|+| +.|++++. +||||||||+++|+..|++|+|+|||+||||+++++.
T Consensus 83 ~~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~---~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~ 159 (427)
T 3dwl_A 83 KASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE---DHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAV 159 (427)
T ss_dssp THHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGG---GCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEE
T ss_pred CcccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCc---CCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecc
Confidence 7743589999999999999999999999999 68999887 8999999999999999999999999999999999999
Q ss_pred hhHHhhhhcC--------CCCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCH
Q psy15183 1000 DSLFSYQYNG--------WEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITP 1071 (1973)
Q Consensus 1000 ~sllS~ya~G--------~g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~ 1071 (1973)
+++||+||+| . +||||||+|+++|+|+||++|+++.++++|+++||+++|+||.++|+.+++. ..+.
T Consensus 160 ~~vla~~a~G~~~~~~~~~--~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~ 234 (427)
T 3dwl_A 160 QAVLALAASWTSSKVTDRS--LTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSL 234 (427)
T ss_dssp HHHHHHHGGGGSTTTCSCC--CCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------C
T ss_pred hHHHHHHhcCCcccccCCC--ceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhH
Confidence 9999999998 5 8999999999999999999999999999999999999999999999988654 4566
Q ss_pred HHHHHHHHHheeccccHHHHHHhhhccccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q psy15183 1072 SRSEELLWDYGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDE 1151 (1973)
Q Consensus 1072 ~~~e~iKe~~c~va~dy~~el~~~~~~~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e 1151 (1973)
..+++||+++|||+.||.+++..+..
T Consensus 235 ~~~~~IKe~~cyv~~d~~~e~~~~~~------------------------------------------------------ 260 (427)
T 3dwl_A 235 KTAERIKEECCYVCPDIVKEFSRFDR------------------------------------------------------ 260 (427)
T ss_dssp HHHHHHHHHHCCCCSCHHHHHHHTTC------------------------------------------------------
T ss_pred HHHHHHHHhcCcccCCHHHHHHHhhc------------------------------------------------------
Confidence 78999999999999988776442110
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCc
Q psy15183 1152 RHLNELLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVP 1231 (1973)
Q Consensus 1152 ~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p 1231 (1973)
. +.
T Consensus 261 ---------------~-------------------------------------------~~------------------- 263 (427)
T 3dwl_A 261 ---------------E-------------------------------------------PD------------------- 263 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------C-------------------------------------------cc-------------------
Confidence 0 00
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCC
Q psy15183 1232 ESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAG 1311 (1973)
Q Consensus 1232 ~~~~~~~~~~~~~r~~r~~i~~k~~~r~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~ 1311 (1973)
. ...|.+.
T Consensus 264 ------------------~---------------------------------------~~~~~l~--------------- 271 (427)
T 3dwl_A 264 ------------------R---------------------------------------YLKYASE--------------- 271 (427)
T ss_dssp -----------------------------------------------------------CCBCC----------------
T ss_pred ------------------c---------------------------------------cceeEee---------------
Confidence 0 0011110
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCccccccccccCCCCC--cEEEecceeeecccccCCCCCcCcc-cccHHHHHHHHHh
Q psy15183 1312 DTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEA--NQLHIGVERMCGPECLFQPSMLGSI-QAGISETLNFVLN 1388 (1973)
Q Consensus 1312 ~~d~e~e~~~l~~le~~l~~~dp~~~~~~~~~~~~~~dg--~~i~l~~ER~~~pEiLF~Ps~ig~~-~~gL~e~I~~sI~ 1388 (1973)
.++| +.|.++.|||++||+||+|+++|.+ ..||+++|.++|.
T Consensus 272 -----------------------------------~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~ 316 (427)
T 3dwl_A 272 -----------------------------------SITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQ 316 (427)
T ss_dssp -------------------------------------------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHH
T ss_pred -----------------------------------CCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHH
Confidence 0123 3688999999999999999999999 5999999999999
Q ss_pred cCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHHhhcC--------------CCCCceEEEecCCCcccceecccccccc
Q psy15183 1389 SYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENR--------------PFQSHFSVSLAENPELDAWSGARQFSLS 1454 (1973)
Q Consensus 1389 ~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l~--------------p~~~~i~V~~~~dp~~~aW~GaSilasl 1454 (1973)
+||+|+|+.|++|||||||+|++|||.+||++||+.+. |...+++|..+++|.|++|+||||||++
T Consensus 317 ~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl 396 (427)
T 3dwl_A 317 SSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQT 396 (427)
T ss_dssp TSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHS
T ss_pred hCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccc
Confidence 99999999999999999999999999999999999987 4566799999999999999999999999
Q ss_pred ccccccceeHHHHhhcCCceeecccCC
Q psy15183 1455 ENFHDFAVTQSDYQEKGGEFFRVHPCS 1481 (1973)
Q Consensus 1455 ~sf~~~~ITreeY~E~G~~il~rk~~~ 1481 (1973)
++|+++||||+||+|+|+.++++++..
T Consensus 397 ~~f~~~witk~EYeE~G~~iv~~~~~~ 423 (427)
T 3dwl_A 397 PEFGSYCHTKADYEEYGASIARRYQIF 423 (427)
T ss_dssp TTHHHHSEEHHHHHHSCGGGGSCCCC-
T ss_pred cchhheeEEHHHHhhhChHhheecccc
Confidence 999999999999999999999987664
No 3
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-65 Score=637.05 Aligned_cols=363 Identities=19% Similarity=0.299 Sum_probs=315.3
Q ss_pred CCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHH
Q psy15183 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQ 945 (1973)
Q Consensus 866 ~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~ 945 (1973)
++..+||||+||++|||||+|++.|+++|||+||+++... ....+||+++.......+.+++||++|+|+|||++|.
T Consensus 21 de~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~---~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dwd~~E~ 97 (498)
T 3qb0_A 21 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADE---GNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQE 97 (498)
T ss_dssp CCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCS---SCCEECCTTGGGSCCTTEEEEESEETTEESCHHHHHH
T ss_pred CCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCC---CccEEEecHHHhcCcCceEEeccCcCCEEccHHHHHH
Confidence 4567999999999999999999999999999999987543 2246899974333334599999999999999999999
Q ss_pred HHHHHH-hhcCcCCCCCCCC-cEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCCC
Q psy15183 946 IFDYAF-SHLSINTEGNVNH-PIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQ 1023 (1973)
Q Consensus 946 i~~~if-~~L~i~~~~~~~~-pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~s 1023 (1973)
||+|+| +.|++++. ++ |||||||++++...|++|+|+|||+||||+++++.+++||+||+|+ +||||||+|++
T Consensus 98 iw~~~f~~~L~v~p~---~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~--~tglVVDiG~g 172 (498)
T 3qb0_A 98 QWQWALQNELYLNSN---SGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGR--PNCLVVDIGHD 172 (498)
T ss_dssp HHHHHHHHTSCCSCC---TTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTC--SSEEEEEECSS
T ss_pred HHHHHHHhhhCCCcc---cCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCC--CeEEEEEcCCC
Confidence 999999 46999987 78 9999999999999999999999999999999999999999999999 99999999999
Q ss_pred ceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCC----------------CCCCCC---------CHHHHHHHH
Q psy15183 1024 CTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYP----------------SHINSI---------TPSRSEELL 1078 (1973)
Q Consensus 1024 ~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~----------------~~~~~~---------~~~~~e~iK 1078 (1973)
.|+|+||++|++++++++|+++||+++|+||.++|+.+.. .+.... ....+++||
T Consensus 173 ~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iK 252 (498)
T 3qb0_A 173 TCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECK 252 (498)
T ss_dssp CEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHH
T ss_pred cEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986411 111111 233688999
Q ss_pred HHheecccc--HHHHHHhhhccccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy15183 1079 WDYGFVATD--YREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNE 1156 (1973)
Q Consensus 1079 e~~c~va~d--y~~el~~~~~~~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~ 1156 (1973)
|++|||++| +..+...
T Consensus 253 E~~c~Va~~~~~~~~~~~-------------------------------------------------------------- 270 (498)
T 3qb0_A 253 ETLCHICPTKTLEETKTE-------------------------------------------------------------- 270 (498)
T ss_dssp HHTCCCCSSCHHHHHHHH--------------------------------------------------------------
T ss_pred HhhEEecCCccHhHHhhh--------------------------------------------------------------
Confidence 999999865 1111000
Q ss_pred HHHHHHHhhcCCCCchhhHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhH
Q psy15183 1157 LLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAE 1236 (1973)
Q Consensus 1157 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~ 1236 (1973)
. . .
T Consensus 271 ----~----~--------------------------------------------~------------------------- 273 (498)
T 3qb0_A 271 ----L----S--------------------------------------------S------------------------- 273 (498)
T ss_dssp ----H----H--------------------------------------------T-------------------------
T ss_pred ----c----c--------------------------------------------C-------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChH
Q psy15183 1237 FKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSE 1316 (1973)
Q Consensus 1237 ~~~~~~~~r~~r~~i~~k~~~r~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e 1316 (1973)
T Consensus 274 -------------------------------------------------------------------------------- 273 (498)
T 3qb0_A 274 -------------------------------------------------------------------------------- 273 (498)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhCCCCccccccccccCCCCCcEEEecce-eeecccccCCCCCcCc---------------------
Q psy15183 1317 EEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVE-RMCGPECLFQPSMLGS--------------------- 1374 (1973)
Q Consensus 1317 ~e~~~l~~le~~l~~~dp~~~~~~~~~~~~~~dg~~i~l~~E-R~~~pEiLF~Ps~ig~--------------------- 1374 (1973)
.....|.+|||+.|.+|.| ||+|||+||+|+++|+
T Consensus 274 -----------------------~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~ 330 (498)
T 3qb0_A 274 -----------------------TAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVP 330 (498)
T ss_dssp -----------------------CCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCC
T ss_pred -----------------------cCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccccccccccc
Confidence 0011245566999999999 9999999999998865
Q ss_pred -----------------------------------------------------------ccccHHHHHHHHHhcCCHHHH
Q psy15183 1375 -----------------------------------------------------------IQAGISETLNFVLNSYPQHIA 1395 (1973)
Q Consensus 1375 -----------------------------------------------------------~~~gL~e~I~~sI~~~~~d~r 1395 (1973)
+.+||+++|.+||++||.|+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r 410 (498)
T 3qb0_A 331 LKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLR 410 (498)
T ss_dssp CCBCC-----------------------------------------------------CCSCCHHHHHHHHHHTSCTTTH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHH
Confidence 568999999999999999999
Q ss_pred HHhhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEec---CCCcccceeccccccccccccccceeHHHHhhcCC
Q psy15183 1396 QSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLA---ENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGG 1472 (1973)
Q Consensus 1396 ~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~---~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~ 1472 (1973)
+.|++||||+||+|++|||.+||++||+.++| ..+++|..+ ++|.+++|+||||||++++|+++||||+||+|.|+
T Consensus 411 ~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~ 489 (498)
T 3qb0_A 411 ATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGV 489 (498)
T ss_dssp HHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCC
T ss_pred HHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCc
Confidence 99999999999999999999999999999999 788999988 68999999999999999999999999999999999
Q ss_pred -ceeeccc
Q psy15183 1473 -EFFRVHP 1479 (1973)
Q Consensus 1473 -~il~rk~ 1479 (1973)
.++++||
T Consensus 490 ~~iv~~kc 497 (498)
T 3qb0_A 490 ERLLNDRF 497 (498)
T ss_dssp HHHHHHTT
T ss_pred HhhccccC
Confidence 8988876
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=100.00 E-value=2.5e-61 Score=596.92 Aligned_cols=371 Identities=42% Similarity=0.707 Sum_probs=338.0
Q ss_pred CCCCcccccCcCCCCCCCCCCcccCCcCCCCCChhhHhhhh----ccCCCCCCCCcHHHhccCCCCccccccCCCCCCCC
Q psy15183 240 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEK----YDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALP 315 (1973)
Q Consensus 240 ~i~kPQ~~f~~~~dn~~~~pf~p~l~~Kp~a~~~l~~~~~~----~~~~~~~~hPy~~ei~~~~~~~~~~~~~~p~~~~p 315 (1973)
+|.|||++|+++||||+++||+|+|++||||++||+.++.. .+....|.|||++||.++.||+++++..+|.++.+
T Consensus 2 ~~~~pq~~f~~~~dn~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~hpy~~ei~~~~~~~~~~~~~~~~~~~~ 81 (410)
T 2hbj_A 2 MVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKS 81 (410)
T ss_dssp CCCCGGGGCSSCCCCCCCSSCCCCCCCCTTCSSCHHHHSSCCCCCSSSCSCCCCTTHHHHHHSCCCGGGSSCCCCCCCCC
T ss_pred CCCCchhhcCCCCCCCCCCCCccccccCCcccCCHHHHhccCcccccCCccCCCCcHHHHhhCCCCHHHhccCCCCCCCC
Confidence 69999999999999998899999999999999999987632 23467899999999999999999999999999999
Q ss_pred CCCCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCce
Q psy15183 316 LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIV 395 (1973)
Q Consensus 316 ~~~~~~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~ 395 (1973)
++++++.+|++.+++.++++.+..++.||||+|++++++|.+.+|+|||++++.+|+||++.+...+..|+++|+|++|.
T Consensus 82 ~~~~~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~~~l~~L~~lL~d~~i~ 161 (410)
T 2hbj_A 82 WDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIV 161 (410)
T ss_dssp GGGCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTSE
T ss_pred cCCCCcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhhhhHHHHHHHHcCCCce
Confidence 99999999999999999999998888999999999998899999999999988899999876644567899999999999
Q ss_pred eeecchhHhHHHHHHHhCCcccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHH
Q psy15183 396 KVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 475 (1973)
Q Consensus 396 KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~ 475 (1973)
||+||+++|+.+|++++|+.+.++|||++|+|+||.+++||++|+++|||+.++|+.+.+||..|||+++|+.|||.||+
T Consensus 162 KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~ 241 (410)
T 2hbj_A 162 KVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTH 241 (410)
T ss_dssp EEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhhcCC--------------CCCChHHHHHHHHhhcCCCHHHHHH
Q psy15183 476 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK--------------PVFNEEGYMNIFRSHALLNNQQKYA 541 (1973)
Q Consensus 476 ~Ll~L~d~L~~~L~e~g~~~~~~l~~v~~e~e~~~~~~y~~--------------~~~~~~~~~~~~~k~~~l~~~ql~~ 541 (1973)
+++.||+.|..+|.+.| ++.+++++|+.+|.+.|+. ...+.+.|.++.+. ..++++++++
T Consensus 242 ~ll~L~~~L~~~L~~~g-----~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l 315 (410)
T 2hbj_A 242 FLLNIYDQLRNKLIESN-----KLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQ-YNIPPEREVL 315 (410)
T ss_dssp THHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCEECCGGGCCSSCCSSEECCCCSSSSSSSCSSC-SCCCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcC-----chHhHHHHHHHHHHHHhhhccccccccccccccCCchhHHHHHHhhh-cCCCHHHHHH
Confidence 99999999999999987 5889999999999987742 11234567655221 2788899999
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHhcCCCCC
Q psy15183 542 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 616 (1973)
Q Consensus 542 l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~~~~~~~ 616 (1973)
|++|++||+++||++|+|+++||+|+.|++||+.+|+|.++|.+++++.++.+|+|+++|+++|++|++.+...|
T Consensus 316 ~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~~g~~~l~~I~~~~~~~~~~~ 390 (410)
T 2hbj_A 316 VRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTN 390 (410)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999976554433
No 5
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-62 Score=637.42 Aligned_cols=441 Identities=15% Similarity=0.184 Sum_probs=298.6
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCC----------------------------------------
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGK---------------------------------------- 907 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~---------------------------------------- 907 (1973)
+.+||||+||++||||||||+.|+ +||||||+++.....
T Consensus 15 ~~iIVIdpGS~~~riG~A~d~~P~-~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (593)
T 4fo0_A 15 NFIIVIHPGSTTLRIGRATDTLPA-SIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSN 93 (593)
T ss_dssp GGEEEEECCSSEEEEEETTCSSCE-EEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred CCEEEEeCCCCCeEeeecCCCCCC-eeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence 458999999999999999999997 569999997642210
Q ss_pred ------------------------------------ccccceecccccccccc-ccEEeecccCC-----------cccC
Q psy15183 908 ------------------------------------KDGETQVGNDISNIEAV-RFQLKTQFDKN-----------VVTH 939 (1973)
Q Consensus 908 ------------------------------------~~~~~~vGdea~~~~~~-~~~l~~Pi~~G-----------~V~d 939 (1973)
....++||++|+.+... .+.+++||++| ++.+
T Consensus 94 ~~r~~~~s~~~~~~~n~~~~p~~i~~~~~~~~~~~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~ 173 (593)
T 4fo0_A 94 GTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAV 173 (593)
T ss_dssp SCCCCCCCHHHHHHHHTTCCCEEEESSCSCCCCCCTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHH
T ss_pred ccccCCCcHHHhhhhhccCCCcccCCCCccccccccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcC
Confidence 11247999999876443 39999999999 5789
Q ss_pred HHHHHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEE
Q psy15183 940 YDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVII 1018 (1973)
Q Consensus 940 wd~le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVV 1018 (1973)
|+++|.||+|+| ++|++++++..+||||||||+++++.+|++|+|+|||+|+||+++++.+++||+||+|+ +|||||
T Consensus 174 wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~--~tglVV 251 (593)
T 4fo0_A 174 LADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGL--SSTCIV 251 (593)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTC--SEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCC--CceEEE
Confidence 999999999999 58999998777899999999999999999999999999999999999999999999999 999999
Q ss_pred eeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhC-CCCCCC----CCHHHHHHHHHHheeccccHHHHHH
Q psy15183 1019 SCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKY-PSHINS----ITPSRSEELLWDYGFVATDYREHLR 1093 (1973)
Q Consensus 1019 DiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~-~~~~~~----~~~~~~e~iKe~~c~va~dy~~el~ 1093 (1973)
|||++.|+|+||+||+++.++++++++||++||+||.++|+.++ +..... .++..+++||+++|||+.|+..+.
T Consensus 252 DiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~- 330 (593)
T 4fo0_A 252 DVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQ- 330 (593)
T ss_dssp EECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCE-
T ss_pred EeCCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhcccccchHHhh-
Confidence 99999999999999999999999999999999999999999884 332222 246679999999999997754321
Q ss_pred hhhccccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchh
Q psy15183 1094 KWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSH 1173 (1973)
Q Consensus 1094 ~~~~~~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~ 1173 (1973)
......+.|.. . +.
T Consensus 331 ---------~~~~~~~~p~~----~-~~---------------------------------------------------- 344 (593)
T 4fo0_A 331 ---------DHEFQIRHPDS----P-AL---------------------------------------------------- 344 (593)
T ss_dssp ---------EEEEEECCTTS----C-EE----------------------------------------------------
T ss_pred ---------hhhhhcccCCC----C-ce----------------------------------------------------
Confidence 11111222211 0 00
Q ss_pred hHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHH
Q psy15183 1174 AREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIID 1253 (1973)
Q Consensus 1174 ~~~~l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~ 1253 (1973)
...++-.++ +++.|...
T Consensus 345 ------~~~~~~~~E--------------------------------------~~~~p~~l------------------- 361 (593)
T 4fo0_A 345 ------LYQFRLGDE--------------------------------------KLQAPMAL------------------- 361 (593)
T ss_dssp ------EEEEEECTH--------------------------------------HHHHHHTT-------------------
T ss_pred ------eeEEeccch--------------------------------------hhcCchhh-------------------
Confidence 000000000 00000000
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhh-hhccCCCCCChHHHHHHHHHHHHHHhhC
Q psy15183 1254 KKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYK-VINKDAGDTDSEEEQERLIELEEILRQH 1332 (1973)
Q Consensus 1254 k~~~r~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~-~i~~d~~~~d~e~e~~~l~~le~~l~~~ 1332 (1973)
-.+..+++......... ....+. +.......+...... .
T Consensus 362 ----------------------------------f~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~ 401 (593)
T 4fo0_A 362 ----------------------------------FYPATFGIVGQKMTTLQHRSQGDP---EDPHDEHYLLATQSK---Q 401 (593)
T ss_dssp ----------------------------------TSGGGGCCCSSCCEEECC----------------------------
T ss_pred ----------------------------------cChhhhcccccccchhhhhcccCc---ccchhhhhhhhcccc---h
Confidence 00111122110000000 000000 000000111100000 0
Q ss_pred CCCccccccccccCCCCCcEEEecceeeecccccCCCCCc--------------------------------CcccccHH
Q psy15183 1333 DPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSML--------------------------------GSIQAGIS 1380 (1973)
Q Consensus 1333 dp~~~~~~~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~i--------------------------------g~~~~gL~ 1380 (1973)
+-..........+..++|..+.++.+|+.+||.||+|... +.+..||+
T Consensus 402 ~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~ 481 (593)
T 4fo0_A 402 EQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLD 481 (593)
T ss_dssp ---------------------------------------------------------------------CHHHHSCCCHH
T ss_pred hhhhhcccccccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHH
Confidence 0000011223457889999999999999999999999532 23457999
Q ss_pred HHHHHHHhcCC-HHHHHHhhcCEEEECCCCCcccHHHHHHHHHhhcCCCC-----CceEEEecC---CCcccceeccccc
Q psy15183 1381 ETLNFVLNSYP-QHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQ-----SHFSVSLAE---NPELDAWSGARQF 1451 (1973)
Q Consensus 1381 e~I~~sI~~~~-~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~-----~~i~V~~~~---dp~~~aW~GaSil 1451 (1973)
++|.+||.+|+ .|+|+.|++|||||||+|+||||.+||++||+.++|.. ..++|..++ ||.+++|+|||||
T Consensus 482 ~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSil 561 (593)
T 4fo0_A 482 KAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVL 561 (593)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHH
Confidence 99999999998 69999999999999999999999999999999999864 358898877 8999999999999
Q ss_pred cccccccccceeHHHHhhcCCceeecccCC
Q psy15183 1452 SLSENFHDFAVTQSDYQEKGGEFFRVHPCS 1481 (1973)
Q Consensus 1452 asl~sf~~~~ITreeY~E~G~~il~rk~~~ 1481 (1973)
|++++|+++||||+||+|+|+.++++||..
T Consensus 562 asL~~f~~~wItk~EYeE~G~~il~~kc~f 591 (593)
T 4fo0_A 562 ACLDTTQELWIYQREWQRFGVRMLRERAAF 591 (593)
T ss_dssp HHCGGGGGTCEEHHHHHHHTTHHHHHHCSS
T ss_pred hcCccHHHeeECHHHHHhhCcHHHhhcCCc
Confidence 999999999999999999999999999874
No 6
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=4e-59 Score=574.02 Aligned_cols=368 Identities=24% Similarity=0.443 Sum_probs=323.0
Q ss_pred CCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC---CccccceeccccccccccccEEeecccCCcccCHHHH
Q psy15183 867 SSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG---KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQ 943 (1973)
Q Consensus 867 ~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~---~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~l 943 (1973)
+.++||||+||++||+||+|++.|++++||++|+++.... .....++||+++...+.. +.+++|+++|+|.||+.+
T Consensus 4 ~~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~-~~~~~Pi~~G~i~d~d~~ 82 (375)
T 2fxu_A 4 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDM 82 (375)
T ss_dssp CCCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTS-EEEECSEETTEECCHHHH
T ss_pred CCceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcc-cceeccccCCcccCHHHH
Confidence 5678999999999999999999999999999999876531 111356999999876543 889999999999999999
Q ss_pred HHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCC
Q psy15183 944 EQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGY 1022 (1973)
Q Consensus 944 e~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~ 1022 (1973)
|.+|+|+| ++|++++. +++++||+|++++...|+.+++++||.||+|+++++.++++|+||+|. ++|||||+|+
T Consensus 83 e~i~~~~~~~~L~~~~~---~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~--~~~lVvDiG~ 157 (375)
T 2fxu_A 83 EKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGD 157 (375)
T ss_dssp HHHHHHHHHTTSCCCGG---GSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC--SSEEEEEECS
T ss_pred HHHHHHHHHHhcCCCCc---CCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC--CeEEEEEcCC
Confidence 99999999 68999886 799999999999999999999999999999999999999999999999 9999999999
Q ss_pred CceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhcccccc
Q psy15183 1023 QCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAEFYD 1102 (1973)
Q Consensus 1023 s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~~~~~ 1102 (1973)
++|+|+||++|+++.+++.++++||+++|++|.++|..++..+....+...+++||+++||++.|+..++....
T Consensus 158 gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~------ 231 (375)
T 2fxu_A 158 GVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAA------ 231 (375)
T ss_dssp SCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHH------
T ss_pred CceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhc------
Confidence 99999999999999999999999999999999999998855443333567799999999999877554322100
Q ss_pred ccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHhhhcC
Q psy15183 1103 SNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMG 1182 (1973)
Q Consensus 1103 ~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 1182 (1973)
+ .
T Consensus 232 --------------------------------~------------------------------~---------------- 233 (375)
T 2fxu_A 232 --------------------------------S------------------------------S---------------- 233 (375)
T ss_dssp --------------------------------H------------------------------C----------------
T ss_pred --------------------------------c------------------------------c----------------
Confidence 0 0
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1183 INNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRR 1262 (1973)
Q Consensus 1183 ~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r~~~~ 1262 (1973)
..
T Consensus 234 ----------------------------~~-------------------------------------------------- 235 (375)
T 2fxu_A 234 ----------------------------SS-------------------------------------------------- 235 (375)
T ss_dssp ----------------------------ST--------------------------------------------------
T ss_pred ----------------------------Cc--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCccccccc
Q psy15183 1263 QDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQE 1342 (1973)
Q Consensus 1263 ~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~~~~~ 1342 (1973)
..
T Consensus 236 --------------------------~~---------------------------------------------------- 237 (375)
T 2fxu_A 236 --------------------------LE---------------------------------------------------- 237 (375)
T ss_dssp --------------------------TC----------------------------------------------------
T ss_pred --------------------------cC----------------------------------------------------
Confidence 00
Q ss_pred cccCCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHH
Q psy15183 1343 QELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDL 1422 (1973)
Q Consensus 1343 ~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL 1422 (1973)
..+.+|+|+.+.++.|||.+||+||+|+++|.+..||+++|.++|.+||+++|+.+++||+||||+|++|||.+||++||
T Consensus 238 ~~~~lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el 317 (375)
T 2fxu_A 238 KSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 317 (375)
T ss_dssp EEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHH
T ss_pred eEEECCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHH
Confidence 11334558899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEecCCCcccceeccccccccccccccceeHHHHhhcCCceeecccC
Q psy15183 1423 LENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 1480 (1973)
Q Consensus 1423 ~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~E~G~~il~rk~~ 1480 (1973)
..+.|...+++|..+++|.+++|+||+++|+++.|+++||||++|+|+|+.++++||+
T Consensus 318 ~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~ 375 (375)
T 2fxu_A 318 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375 (375)
T ss_dssp HHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred HHhCCCCeeEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence 9999988889999999999999999999999999999999999999999999999874
No 7
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=1.3e-60 Score=590.74 Aligned_cols=366 Identities=23% Similarity=0.383 Sum_probs=153.8
Q ss_pred CCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC-----CccccceeccccccccccccEEeecccCCcccCH
Q psy15183 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG-----KKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHY 940 (1973)
Q Consensus 866 ~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~-----~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dw 940 (1973)
.+..+||||+||++|||||+|++.|+++|||++|+++.... .....+++|+++...+. .+.+++|+++|+|+||
T Consensus 4 ~~~~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~-~~~~~~Pi~~G~i~dw 82 (394)
T 1k8k_B 4 QGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRS-MLEVNYPMENGIVRNW 82 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCC-CceeeccccCCEEecH
Confidence 35678999999999999999999999999999999876431 11235689999987654 3889999999999999
Q ss_pred HHHHHHHHHHH--hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEE
Q psy15183 941 DIQEQIFDYAF--SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVII 1018 (1973)
Q Consensus 941 d~le~i~~~if--~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVV 1018 (1973)
+.+|.+|+|+| +.|++++. ++||+||+|++++...|++++|++||.||+|+++++.++++|+|++|+ ++||||
T Consensus 83 d~~e~i~~~~~~~~~L~~~~~---~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~--~~~lVV 157 (394)
T 1k8k_B 83 DDMKHLWDYTFGPEKLNIDTR---NCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL--LTGVVV 157 (394)
T ss_dssp ----------------------------------------------------------------------------CCEE
T ss_pred HHHHHHHHHHhcccccCcCCC---CCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC--ceEEEE
Confidence 99999999999 67999887 799999999999999999999999999999999999999999999999 999999
Q ss_pred eeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheeccccHHHHHHhhhcc
Q psy15183 1019 SCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDA 1098 (1973)
Q Consensus 1019 DiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va~dy~~el~~~~~~ 1098 (1973)
|+|+++|+|+||++|+++.+++.++++||+++|++|.++|..++..+....+...+++||+++||++.|+..++....
T Consensus 158 DiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~-- 235 (394)
T 1k8k_B 158 DSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLAL-- 235 (394)
T ss_dssp EECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHH--
T ss_pred EcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhc--
Confidence 999999999999999999999999999999999999999998866665556788999999999999877544321100
Q ss_pred ccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcCCCCchhhHHHh
Q psy15183 1099 EFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAF 1178 (1973)
Q Consensus 1099 ~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~~~~~~~~~~~~~l 1178 (1973)
+.
T Consensus 236 -------------------------------------------------------------------~~----------- 237 (394)
T 1k8k_B 236 -------------------------------------------------------------------ET----------- 237 (394)
T ss_dssp -------------------------------------------------------------------HC-----------
T ss_pred -------------------------------------------------------------------cC-----------
Confidence 00
Q ss_pred hhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1179 KSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKKNAR 1258 (1973)
Q Consensus 1179 ~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r~~r~~i~~k~~~r 1258 (1973)
..
T Consensus 238 --------------------------------~~---------------------------------------------- 239 (394)
T 1k8k_B 238 --------------------------------TV---------------------------------------------- 239 (394)
T ss_dssp --------------------------------ST----------------------------------------------
T ss_pred --------------------------------Cc----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHHHHHHhhCCCCccc
Q psy15183 1259 KQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTS 1338 (1973)
Q Consensus 1259 ~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~le~~l~~~dp~~~~ 1338 (1973)
....
T Consensus 240 ------------------------------~~~~---------------------------------------------- 243 (394)
T 1k8k_B 240 ------------------------------LVES---------------------------------------------- 243 (394)
T ss_dssp ------------------------------TCEE----------------------------------------------
T ss_pred ------------------------------CceE----------------------------------------------
Confidence 0111
Q ss_pred cccccccCCCCCcEEEecceeeecccccCCCCCcCcccccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHH
Q psy15183 1339 LNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERL 1418 (1973)
Q Consensus 1339 ~~~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL 1418 (1973)
|.+|+|+.+.++.|||++||+||+|+++|.+..||+++|.++|.+||+++|+.|++||+||||+|++|||.+||
T Consensus 244 ------~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl 317 (394)
T 1k8k_B 244 ------YTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRL 317 (394)
T ss_dssp ------EECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHH
T ss_pred ------EECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHH
Confidence 34555889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC-----------CCCCceEEEecCCCcccceecccccccccccc-ccceeHHHHhhcCCceeec
Q psy15183 1419 NKDLLENR-----------PFQSHFSVSLAENPELDAWSGARQFSLSENFH-DFAVTQSDYQEKGGEFFRV 1477 (1973)
Q Consensus 1419 ~~EL~~l~-----------p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~-~~~ITreeY~E~G~~il~r 1477 (1973)
++||..+. |...+++|..+++|.+++|+|||++|++++|+ ++||||++|+|+|+.++++
T Consensus 318 ~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 318 ERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388 (394)
T ss_dssp HHHHHHHHHHHTCSSCCCTTCCCCC----------------------------------------------
T ss_pred HHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence 99999987 77778999999999999999999999999999 9999999999999999887
No 8
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=5.1e-56 Score=553.69 Aligned_cols=375 Identities=23% Similarity=0.379 Sum_probs=320.8
Q ss_pred CCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC-----------CccccceeccccccccccccEEeecccC
Q psy15183 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG-----------KKDGETQVGNDISNIEAVRFQLKTQFDK 934 (1973)
Q Consensus 866 ~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~-----------~~~~~~~vGdea~~~~~~~~~l~~Pi~~ 934 (1973)
.+..+||||+||++||+||+|++.|+.+|||+|++++.... ..+..++||+++...+ .+.+++|+++
T Consensus 3 ~~~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~--~~~~~~pi~~ 80 (418)
T 1k8k_A 3 GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKP--TYATKWPIRH 80 (418)
T ss_dssp CCSCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCT--TSEEECCEET
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcC--CCEEeccccC
Confidence 34678999999999999999999999999999999875421 1122479999998875 3899999999
Q ss_pred CcccCHHHHHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhc-----
Q psy15183 935 NVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYN----- 1008 (1973)
Q Consensus 935 G~V~dwd~le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~----- 1008 (1973)
|+|+||+.++.+|+|+| +.|+++++ +++++||+|++++...|+.|.+++||.||+++++++.++++|+|++
T Consensus 81 G~i~d~d~~e~i~~~~~~~~L~~~~~---~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~ 157 (418)
T 1k8k_A 81 GIVEDWDLMERFMEQVIFKYLRAEPE---DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ 157 (418)
T ss_dssp TEESCHHHHHHHHHHHHHTTTCCCGG---GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTT
T ss_pred CEECCHHHHHHHHHHHHHhccCCCCC---CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccc
Confidence 99999999999999999 57999887 7999999999999999999999999999999999999999999983
Q ss_pred ---CCCCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheecc
Q psy15183 1009 ---GWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 1085 (1973)
Q Consensus 1009 ---G~g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va 1085 (1973)
+. .+|||||+|+++|+|+||++|+++.+++.++++||+++|++|.++|..++..+....+...++++|+++||++
T Consensus 158 ~~~~~--~~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~ 235 (418)
T 1k8k_A 158 VGERT--LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVC 235 (418)
T ss_dssp CCSCC--CCEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCC
T ss_pred cCCCC--CeEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchhc
Confidence 22 4899999999999999999999999999999999999999999999988765544456778999999999998
Q ss_pred ccHHHHHHhhhccccccccceecccCccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhh
Q psy15183 1086 TDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVE 1165 (1973)
Q Consensus 1086 ~dy~~el~~~~~~~~~~~~~~~iqlP~~~~~~~~~~e~~~~~r~~~~~rL~e~~~~~r~e~l~~~e~~l~~~~~l~~~~~ 1165 (1973)
.|+..++.++..
T Consensus 236 ~~~~~e~~~~~~-------------------------------------------------------------------- 247 (418)
T 1k8k_A 236 PDLVKEFNKYDT-------------------------------------------------------------------- 247 (418)
T ss_dssp SCHHHHHHHHHH--------------------------------------------------------------------
T ss_pred ccHHHHHHhhcc--------------------------------------------------------------------
Confidence 876554332100
Q ss_pred cCCCCchhhHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHhHhhcCCCCCCCchhhhhhhhcccCcchhhHHHHHHHHHH
Q psy15183 1166 LTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETK 1245 (1973)
Q Consensus 1166 ~~~~~~~~~~~~l~~~~~~~~~el~~~i~~~~~~i~k~~~~~~~~~~~~~l~~~~~ek~~~~~~~p~~~~~~~~~~~~~r 1245 (1973)
. ..
T Consensus 248 -~-------------------------------------------~~--------------------------------- 250 (418)
T 1k8k_A 248 -D-------------------------------------------GS--------------------------------- 250 (418)
T ss_dssp -S-------------------------------------------GG---------------------------------
T ss_pred -c-------------------------------------------cc---------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCCcchhhhhhhccCCCCCChHHHHHHHHHH
Q psy15183 1246 KKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIEL 1325 (1973)
Q Consensus 1246 ~~r~~i~~k~~~r~~~~~~~~~r~s~a~q~r~~~i~~~~~~~~~~d~f~lpd~dw~vy~~i~~d~~~~d~e~e~~~l~~l 1325 (1973)
.-...|.+|| +
T Consensus 251 ------------------------------------------~~~~~~~lpd------------~--------------- 261 (418)
T 1k8k_A 251 ------------------------------------------KWIKQYTGIN------------A--------------- 261 (418)
T ss_dssp ------------------------------------------GTCEEEEEEC------------T---------------
T ss_pred ------------------------------------------ccceeEECCC------------C---------------
Confidence 0001223333 0
Q ss_pred HHHHhhCCCCccccccccccCCCCCcEEEecceeeecccccCCCCCcCccc-ccHHHHHHHHHhcCCHHHHHHhhcCEEE
Q psy15183 1326 EEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQ-AGISETLNFVLNSYPQHIAQSLANNIFV 1404 (1973)
Q Consensus 1326 e~~l~~~dp~~~~~~~~~~~~~~dg~~i~l~~ER~~~pEiLF~Ps~ig~~~-~gL~e~I~~sI~~~~~d~r~~L~~NIvL 1404 (1973)
.......+.++.|||++||+||+|+++|.+. .||+++|.++|.+|+.++|+.+++||+|
T Consensus 262 --------------------~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL 321 (418)
T 1k8k_A 262 --------------------ISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVL 321 (418)
T ss_dssp --------------------TTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEE
T ss_pred --------------------CCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEE
Confidence 0001237899999999999999999999886 7999999999999999999999999999
Q ss_pred ECCCCCcccHHHHHHHHHhhcC----------------CCCCceEEEecCCCcccceeccccccccccccccceeHHHHh
Q psy15183 1405 TGSLCQLPGFVERLNKDLLENR----------------PFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQ 1468 (1973)
Q Consensus 1405 TGG~S~ipGf~eRL~~EL~~l~----------------p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ITreeY~ 1468 (1973)
|||+|++|||.+||++||..++ |...+++|..+++|.+++|+||||||++++|+++||||++|+
T Consensus 322 ~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~itk~ey~ 401 (418)
T 1k8k_A 322 SGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYE 401 (418)
T ss_dssp ESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHH
T ss_pred eCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcCccHhheEEEHHHHh
Confidence 9999999999999999999875 566678999999999999999999999999999999999999
Q ss_pred hcCCceeecccCC
Q psy15183 1469 EKGGEFFRVHPCS 1481 (1973)
Q Consensus 1469 E~G~~il~rk~~~ 1481 (1973)
|+|+.+++++++.
T Consensus 402 e~G~~~~~~~~~f 414 (418)
T 1k8k_A 402 EIGPSICRHNPVF 414 (418)
T ss_dssp HHCGGGGGCCCCC
T ss_pred hhCHHHHhhhccc
Confidence 9999999998775
No 9
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=2.2e-51 Score=517.21 Aligned_cols=217 Identities=18% Similarity=0.201 Sum_probs=191.1
Q ss_pred CCCceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCC------------c-------------------------
Q psy15183 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGK------------K------------------------- 908 (1973)
Q Consensus 866 ~~~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~------------~------------------------- 908 (1973)
+...+|||++||.++|+|+|.|..|. ++|+|||++...... .
T Consensus 38 ~~~~~IVIHpGS~~lRIG~AsD~~P~-~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~rmr~~k 116 (655)
T 4am6_A 38 DPTATIVIHPGSNSIKIGFPKDDHPV-VVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYYK 116 (655)
T ss_dssp CGGGEEEEECCSSEEEEECTTSSSCE-EEESCEEEEGGGSCCSSSCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCeEEEcCCCcceeeeecCCCCCc-ccceeEEeccccccCCCccccCccccchhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 34678999999999999999999995 779999976532110 0
Q ss_pred -------------------------------------cccceeccccccccccccEEeecccCCccc----C-------H
Q psy15183 909 -------------------------------------DGETQVGNDISNIEAVRFQLKTQFDKNVVT----H-------Y 940 (1973)
Q Consensus 909 -------------------------------------~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~----d-------w 940 (1973)
...++||++|..+....+.+++||++|+|+ | |
T Consensus 117 ~r~~pn~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~~~d~~VGdEA~~~~r~~l~l~~PI~~GvI~~~s~Dy~s~q~~W 196 (655)
T 4am6_A 117 RKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELI 196 (655)
T ss_dssp CCCSTTCCSSTTCCEEEECSCCCCSSSSCCSCCCBCCTTSCEEHHHHHTBCTTTEEEECSEETTEECTTCSSCSSHHHHH
T ss_pred CCCCCCCHHHHHHhcCCCCCeECCCCCCccccccccCCCCEEEehHHhhCCccCeEEeccccCCEecccCCccccccccH
Confidence 015689999987644459999999999998 8 9
Q ss_pred HHHHHHHHHHHh--hcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcC-CCCceEEE
Q psy15183 941 DIQEQIFDYAFS--HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNG-WEGQSGVI 1017 (1973)
Q Consensus 941 d~le~i~~~if~--~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G-~g~~tgLV 1017 (1973)
+++|.||+|+|. +|++++.++.++|||||||+++++..|++|+|+|||+||||+++++.++++|+||+| . ++|||
T Consensus 197 D~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~--ttGLV 274 (655)
T 4am6_A 197 SDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGIS--TSTCV 274 (655)
T ss_dssp HHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCS--SCEEE
T ss_pred HHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCC--CceEE
Confidence 999999999996 899998655589999999999999999999999999999999999999999999999 7 89999
Q ss_pred EeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhC-CC----CCCCCCHHHHHHHHHHheecc
Q psy15183 1018 ISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKY-PS----HINSITPSRSEELLWDYGFVA 1085 (1973)
Q Consensus 1018 VDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~-~~----~~~~~~~~~~e~iKe~~c~va 1085 (1973)
||+|+++|+|+||++|+++.++++|+++||+++|+||.++|..++ |+ +....+...+++|||++|||+
T Consensus 275 VDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~CyVs 347 (655)
T 4am6_A 275 VNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQ 347 (655)
T ss_dssp EEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCCC
T ss_pred EcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheEEEc
Confidence 999999999999999999999999999999999999999999984 32 344446778999999999994
No 10
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=6.5e-48 Score=476.45 Aligned_cols=287 Identities=52% Similarity=0.895 Sum_probs=265.9
Q ss_pred ccCCccccccccCCCCCCCCCcccccCCCCCCChhhHhhhhc-----------------------------ccccccCCc
Q psy15183 1685 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKY-----------------------------DAIESFCHP 1735 (1973)
Q Consensus 1685 ~~~~pq~~f~~~~dn~~~~~~~p~~~~k~~~~~~~~~~~~~~-----------------------------~~~~~~~hp 1735 (1973)
.|.|||+.|+++||||+ .||+|+|++||||++||+.++... .....|.||
T Consensus 1 ~i~~pq~~f~~~~dn~~-~p~~p~~~~kp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp 79 (428)
T 3saf_A 1 SIIRPQLKFREKIDNSN-TPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHP 79 (428)
T ss_dssp CCCCGGGGCSSCCCCSS-SCCCCCCCCCTTCSSCCCGGGSGGGC-----------------------------CCSSSCT
T ss_pred CCCCchhccCCCCCCCC-CCCCCccCCCCcccCCHHHHhhhhhhcccccCcccccccchhhhccccccccccCCCCCCCC
Confidence 38999999999999998 599999999999999999754321 123469999
Q ss_pred chhhhccCCCCccccccCCCCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCce
Q psy15183 1736 YEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD 1815 (1973)
Q Consensus 1736 y~~ei~~~~~~~~~~~~~~p~~~~~~~~~~~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~ 1815 (1973)
|+|||+++.+++.++.+.+|.++.|++++++.+|++.+++.++++.+..++.||||+|+++.+++.+.+|+|||++.+++
T Consensus 80 y~~ei~~~~~~~~~~~~~~~~~~~p~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~ 159 (428)
T 3saf_A 80 YQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTED 159 (428)
T ss_dssp THHHHHTCCCCHHHHSCCCCCCCCCGGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTTCSSCEEEEEEEECSSCE
T ss_pred hHHHHhcCCCCHHHhCcCCCCCCCCCCCCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred EEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHHHHHhcCCcccccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCc
Q psy15183 1816 YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDK 1895 (1973)
Q Consensus 1816 ~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K 1895 (1973)
|+||++.++..+..|+++|+|++|.||+||+++|+.+|++.+|+.+.++|||++|+|+|+.+++||+.|+++|||+.++|
T Consensus 160 ~lidpl~l~~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 160 FIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp EEEETTTTGGGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred EEEEeccchhhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCc
Confidence 99999988766788999999999999999999999999878999999999999999999988899999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q psy15183 1896 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI 1972 (1973)
Q Consensus 1896 ~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~~~g~~~Ll~~V~~~s~~~~~~~y~k~~~~~~~~~~~ 1972 (1973)
..+.+||+.|||+.+|+.|||.||+++++||+.|.++|.+.+.+..+++..++++|..+|+++|++|.+++++|.++
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLEL 316 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCCcccHHHH
Confidence 99999999999999999999999999999999999999988332367899999999999999999999999999765
No 11
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=100.00 E-value=2.5e-43 Score=436.23 Aligned_cols=272 Identities=48% Similarity=0.803 Sum_probs=249.4
Q ss_pred ccCCccccccccCCCCCCCCCcccccCCCCCCChhhHhh----hhcccccccCCcchhhhccCCCCccccccCCCCCCCC
Q psy15183 1685 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL----EKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALP 1760 (1973)
Q Consensus 1685 ~~~~pq~~f~~~~dn~~~~~~~p~~~~k~~~~~~~~~~~----~~~~~~~~~~hpy~~ei~~~~~~~~~~~~~~p~~~~~ 1760 (1973)
||+|||+.|+++||||++.||+|+|++||||++||+.++ +..+....|.|||+|||+++.+++.++...+|.++.+
T Consensus 2 ~~~~pq~~f~~~~dn~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~hpy~~ei~~~~~~~~~~~~~~~~~~~~ 81 (410)
T 2hbj_A 2 MVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKS 81 (410)
T ss_dssp CCCCGGGGCSSCCCCCCCSSCCCCCCCCTTCSSCHHHHSSCCCCCSSSCSCCCCTTHHHHHHSCCCGGGSSCCCCCCCCC
T ss_pred CCCCchhhcCCCCCCCCCCCCccccccCCcccCCHHHHhccCcccccCCccCCCCcHHHHhhCCCCHHHhccCCCCCCCC
Confidence 799999999999999987899999999999999999776 3334456799999999999999999988889999999
Q ss_pred CCCCCeEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCce
Q psy15183 1761 LSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIV 1840 (1973)
Q Consensus 1761 ~~~~~~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~ 1840 (1973)
++++++.+|++.+++.++++.|..++.||||+|+++++++.+.+|+|||++.+.+|++|++.+...+..|+++|+|++|.
T Consensus 82 ~~~~~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~~~l~~L~~lL~d~~i~ 161 (410)
T 2hbj_A 82 WDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIV 161 (410)
T ss_dssp GGGCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTSE
T ss_pred cCCCCcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhhhhHHHHHHHHcCCCce
Confidence 99999999999999999999988888999999999888888999999999988899999766644566799999999999
Q ss_pred EeecchHHHHHHHHHhcCCcccccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHH
Q psy15183 1841 KVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 1920 (1973)
Q Consensus 1841 KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~ 1920 (1973)
||+||++.|+.+|++++|+.+.++|||++|+|+|+..++||++|+++|||+.++|..+.+||..|||+++|+.|||.||+
T Consensus 162 KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~ 241 (410)
T 2hbj_A 162 KVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTH 241 (410)
T ss_dssp EEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhhhcCC
Q psy15183 1921 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 1961 (1973)
Q Consensus 1921 ~LL~Lyd~L~~eL~e~~~g~~~Ll~~V~~~s~~~~~~~y~k 1961 (1973)
+++.||+.|..+|.+. |+. ..++++|+.+|.++|+.
T Consensus 242 ~ll~L~~~L~~~L~~~--g~~---~~~~~e~~~l~~~~~~~ 277 (410)
T 2hbj_A 242 FLLNIYDQLRNKLIES--NKL---AGVLYESRNVAKRRFEY 277 (410)
T ss_dssp THHHHHHHHHHHHHHT--TCH---HHHHHHHHHHHHCEECC
T ss_pred HHHHHHHHHHHHHHhc--Cch---HhHHHHHHHHHHHHhhh
Confidence 9999999999999977 554 45789999999999875
No 12
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=100.00 E-value=2.4e-39 Score=397.97 Aligned_cols=286 Identities=24% Similarity=0.350 Sum_probs=260.5
Q ss_pred CcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeec
Q psy15183 320 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 399 (1973)
Q Consensus 320 ~~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H 399 (1973)
++.+|+|.+++.++++.+...+.+|||+|+.+.++|.+.+|+|||++++.+|+||+..+. .+..|+++|+|++|.||+|
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~-~~~~L~~ll~d~~i~Kv~h 80 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITKFLH 80 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTSEEEES
T ss_pred CeEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC-ChHHHHHHHcCCCceEEEe
Confidence 567899999999999999888899999999999889999999999998889999976553 5788999999999999999
Q ss_pred chhHhHHHHHHHhCCcccceeehhhhhhhcCCC-CccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHH
Q psy15183 400 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 478 (1973)
Q Consensus 400 ~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~-~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll 478 (1973)
|+++|+.+|++++|+.+.++|||++|+|+||.+ ++||+.|+++|||+.++|+.+.+||..|||+++|+.||+.||++++
T Consensus 81 ~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~ 160 (375)
T 1yt3_A 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL 160 (375)
T ss_dssp SCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHH
T ss_pred eHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999878999999999999999999976 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCC
Q psy15183 479 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDE 558 (1973)
Q Consensus 479 ~L~d~L~~~L~e~g~~~~~~l~~v~~e~e~~~~~~y~~~~~~~~~~~~~~~k~~~l~~~ql~~l~~L~~WRd~~Ar~~D~ 558 (1973)
.||+.|..+|.+.| ++.++|++++..+...+... .+.+.|.++.+. ..++++|++++++|++||+++||++|+
T Consensus 161 ~L~~~L~~~L~~~g-----~~~l~~~e~E~pl~~~~~~~-~~~~~~~~~~~~-~~l~~~~~~~~~~L~~wR~~~A~~~d~ 233 (375)
T 1yt3_A 161 PITAKLMVETEASG-----WLPAALDECRLMQMRRQEVV-APEDAWRDITNA-WQLRTRQLACLQLLADWRLRKARERDL 233 (375)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHCCC-CGGGGGGGSTTG-GGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC-----cHHHHHHHHHHHHhhcccCC-CchHHHHhccCc-ccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999887 46777999998887766433 245667665221 278999999999999999999999999
Q ss_pred CCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHhcCCC
Q psy15183 559 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLT 614 (1973)
Q Consensus 559 s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~~~~~ 614 (1973)
|+++||+|+.|++||+.+|+|.++|.++ +..+..+++|+++|+++|+++++.|..
T Consensus 234 p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~~~~~~~~~g~~~l~~i~~~~~~~~~ 288 (375)
T 1yt3_A 234 AVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPED 288 (375)
T ss_dssp CGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred CcceEECHHHHHHHHHHCCCCHHHHHhc-CCChHHHHHHHHHHHHHHHHHHhCCHh
Confidence 9999999999999999999999999999 999999999999999999999987764
No 13
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=100.00 E-value=1.5e-37 Score=387.64 Aligned_cols=293 Identities=20% Similarity=0.236 Sum_probs=258.0
Q ss_pred CCCCCCCCCcEEeCCHHHHHHHHHHHhcC-CeEEEEeeeccCCccCCcEEEEEEEeCCc-eEEEEccCcc---ccHHHHH
Q psy15183 312 QALPLSDTPLMMITEPEQVTQLVSELKQQ-QEIAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLR---EDLEVLN 386 (1973)
Q Consensus 312 ~~~p~~~~~~~~Idt~e~L~~ll~~L~~~-~~IavDtE~~~~~s~~g~l~LIQIst~~~-~~lID~l~l~---~~l~~L~ 386 (1973)
.+.|+++++ .+|++.+++.++++.+..+ +.||||+|+++.++|.+.+|+|||++.++ +|+||++.+. .++..|+
T Consensus 10 l~~p~~~~~-~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~ 88 (440)
T 3cym_A 10 LAEPREGVP-NVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFN 88 (440)
T ss_dssp CCSCTTCCC-CEECSHHHHHHHHHHHHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCC-EeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHH
Confidence 678888887 6899999999999998877 88999999999888899999999998554 8999986532 3477899
Q ss_pred HHHcCCCceeeecchhHhHHHHHHHhCCcccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCchh
Q psy15183 387 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 466 (1973)
Q Consensus 387 ~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eq 466 (1973)
++|+|+ .||+|++++|+.+|+ ++|+.+.++|||++|+|+||.+++||+.|+++|+|..++|..+++||+.|||+++|
T Consensus 89 ~lL~d~--~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q 165 (440)
T 3cym_A 89 RAVGDA--VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 165 (440)
T ss_dssp HHHTTC--EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCSSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHH
T ss_pred HHHCCC--CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCCCCCHHHHHHHHhCCCcccccccCCCcCCCCCHHH
Confidence 999997 699999999999995 99999999999999999999878999999999999999999999999999999999
Q ss_pred HhHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhcCC--CHHHHHHHHH
Q psy15183 467 IQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALL--NNQQKYALRE 544 (1973)
Q Consensus 467 l~YAa~Da~~Ll~L~d~L~~~L~e~g~~~~~~l~~v~~e~e~~~~~~y~~~~~~~~~~~~~~~k~~~l--~~~ql~~l~~ 544 (1973)
+.||+.||++++.||+.|..+|.+.| ++..+.++++.++...+.++....+.|.++.+.. .+ +++|+++|++
T Consensus 166 ~~YAa~Da~~Ll~L~~~L~~~L~~~g-----~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~ 239 (440)
T 3cym_A 166 RNYAALDVELLIELETKMRAELKRQG-----KMEWAQEEFDYALKEGLGPRKEHLIPWMHVSHIT-EVMRDRQALAIVRA 239 (440)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHSSSCCCCSSGGGCCTTGG-GGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-----cHHHHHHHHHHHhccccccCCCchHHHHHhcccc-ccCCCHHHHHHHHH
Confidence 99999999999999999999999987 4677788888888877653444556675442222 45 9999999999
Q ss_pred HHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCc------------------hhHHH-hHHHHHHHH
Q psy15183 545 LYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVP------------------QTVKE-HVLDIHAII 605 (1973)
Q Consensus 545 L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~------------------~~vr~-~~~~i~~iI 605 (1973)
|++||+++||++|+|+++||+|+.|++||+.+|+|.++|.++.+... |++|+ |+..|+++|
T Consensus 240 L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~i 319 (440)
T 3cym_A 240 LWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKPSMWKNII 319 (440)
T ss_dssp HHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCchheecccchhhhhhcccchhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999876443 55588 999999999
Q ss_pred HHHHhcCCC
Q psy15183 606 LKARLQSLT 614 (1973)
Q Consensus 606 ~~a~~~~~~ 614 (1973)
++|++.|..
T Consensus 320 ~~~~~~~~~ 328 (440)
T 3cym_A 320 QDALALPPS 328 (440)
T ss_dssp HHHHTSCGG
T ss_pred HHHHhCCHh
Confidence 999987764
No 14
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=99.93 E-value=2.2e-27 Score=239.31 Aligned_cols=80 Identities=39% Similarity=0.595 Sum_probs=76.8
Q ss_pred CchhhhhccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHhHHHHhhhhhccccccceecCccccccccccccccc----
Q psy15183 1 MSYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTFLFIVTKMSDT---- 76 (1973)
Q Consensus 1 m~y~~yr~st~g~~l~~~lde~~~~~~i~~~la~~vl~~fd~~~~~~l~~~v~~k~~~k~g~l~~y~~~~~~~~~~---- 76 (1973)
|+|||||+||||.+|+|||||||++|+|+|+||++||.+||++|+++|+++||+|++|| |||+||||||+||+|.
T Consensus 4 ~~y~lYR~StiG~aL~dtLdEli~~~~Isp~la~kVL~~FDksi~~aL~~~vksk~sfK-G~L~tYrfcDnVWtfilkd~ 82 (121)
T 1nh2_D 4 GYYELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVK-GNLDTYGFCDDVWTFIVKNC 82 (121)
T ss_dssp CCCCGGGGSHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHSCCCEEEEE-EEEEEEEEETTEEEEEEEEE
T ss_pred chHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEE-eeeccccccCcEEEEEEece
Confidence 89999999999999999999999999999999999999999999999999999999999 9999999999999976
Q ss_pred ccccC
Q psy15183 77 NQEIP 81 (1973)
Q Consensus 77 ~~~~~ 81 (1973)
.|+++
T Consensus 83 ~fk~~ 87 (121)
T 1nh2_D 83 QVTVE 87 (121)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 56555
No 15
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=99.93 E-value=2.7e-27 Score=235.61 Aligned_cols=79 Identities=57% Similarity=0.817 Sum_probs=74.6
Q ss_pred chhhhhccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHhHHHHhhhhhccccccceecCccccccccccccccc----c
Q psy15183 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTFLFIVTKMSDT----N 77 (1973)
Q Consensus 2 ~y~~yr~st~g~~l~~~lde~~~~~~i~~~la~~vl~~fd~~~~~~l~~~v~~k~~~k~g~l~~y~~~~~~~~~~----~ 77 (1973)
+|||||+||||.||+|||||||++|.|+|+||++||.+||+||+++|+++||+|++|| |||+||||||+||+|. .
T Consensus 1 ~y~lYR~stiG~aL~dtLdEli~~~~Isp~la~kVL~~FDksi~~aL~~~vksk~sfK-G~L~tYrfcDnVWTf~lkd~~ 79 (108)
T 1nvp_D 1 AYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR-GSLNTYRFCDNVWTFVLNDVE 79 (108)
T ss_dssp -CGGGGSSHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHTCCCEEEEE-EEEEEEEEETTEEEEEEEEEE
T ss_pred ChhHHhhChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEe-eccCCccccCcEEEEEEeceE
Confidence 5999999999999999999999999999999999999999999999999999999999 9999999999999976 5
Q ss_pred cccC
Q psy15183 78 QEIP 81 (1973)
Q Consensus 78 ~~~~ 81 (1973)
|+++
T Consensus 80 fk~~ 83 (108)
T 1nvp_D 80 FREV 83 (108)
T ss_dssp EECS
T ss_pred EEec
Confidence 5544
No 16
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.93 E-value=1.6e-25 Score=271.80 Aligned_cols=205 Identities=14% Similarity=0.087 Sum_probs=167.6
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccc---cccEEeecccCCcccCHHHHHH
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEA---VRFQLKTQFDKNVVTHYDIQEQ 945 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~---~~~~l~~Pi~~G~V~dwd~le~ 945 (1973)
.+|+||+||.++++|++++. |...+||+|+...... ..+++|+++..... ....+.+|+.+|.+.+|+.++.
T Consensus 4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~~----~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~ 78 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTTG----EILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALV 78 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTTC----CEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHH
T ss_pred ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCCC----cEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHHHHH
Confidence 47999999999999999876 7778999999875411 13579999876543 1256789999999999999999
Q ss_pred HHHHHHhhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCC
Q psy15183 946 IFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGY 1022 (1973)
Q Consensus 946 i~~~if~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~ 1022 (1973)
+|.++|.++.... .....++++|+|..++...|+.+.+ +||.+|++.+.+..++++|+|+++.. ..+++|||+|+
T Consensus 79 i~~~~l~~~~~~~-~~~~~~~vitvP~~~~~~~r~~~~~-a~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGg 156 (344)
T 1jce_A 79 MLRYFINKAKGGM-NLFKPRVVIGVPIGITDVERRAILD-AGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGG 156 (344)
T ss_dssp HHHHHHHHHHTSC-CSCCCEEEEEECTTCCHHHHHHHHH-HHHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECS
T ss_pred HHHHHHHHHhhcc-ccCCCeEEEEECCCCCHHHHHHHHH-HHHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCC
Confidence 9999997653311 1225789999999999999999999 57999999999999999999999762 36899999999
Q ss_pred CceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHheecc
Q psy15183 1023 QCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVA 1085 (1973)
Q Consensus 1023 s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va 1085 (1973)
++|+|+++..|.++. ...+++||.++++.|.+.|..++. ..+....+|++|+.+|+..
T Consensus 157 gttdvsv~~~~~~~~--~~~~~lGG~~id~~l~~~l~~~~~---~~~~~~~ae~~K~~l~~~~ 214 (344)
T 1jce_A 157 GTTEVAVISLGSIVT--WESIRIAGDEMDEAIVQYVRETYR---VAIGERTAERVKIEIGNVF 214 (344)
T ss_dssp SCEEEEEEETTEEEE--EEEESCSHHHHHHHHHHHHHHHHC---EECCHHHHHHHHHHHCBCS
T ss_pred CeEEEEEEEcCCEEe--eCCCCccChhHHHHHHHHHHHHhC---cccCHHHHHHHHHHHhccC
Confidence 999999999999874 568899999999999999987632 1234566777777777664
No 17
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.90 E-value=1e-23 Score=237.90 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=140.6
Q ss_pred EEeCCHHHHHHHHHHH------hcCCeEEEEeeeccC------CccC--CcEEEEEEEeCCceEEEEcc-CccccHHHHH
Q psy15183 322 MMITEPEQVTQLVSEL------KQQQEIAIDLEYHNY------RSYQ--GYTCLMQISTRDKDYIVDTL-KLREDLEVLN 386 (1973)
Q Consensus 322 ~~Idt~e~L~~ll~~L------~~~~~IavDtE~~~~------~s~~--g~l~LIQIst~~~~~lID~l-~l~~~l~~L~ 386 (1973)
.+|.+.+++..++..+ .....||||+||.+. +++. +.+||||||+++++++|++. .+...+.+|.
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~~~~~~~L~~L~ 101 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLY 101 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGHHHH
T ss_pred EEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEeccccCCccHHHHH
Confidence 4566666677777766 556789999999853 2455 49999999999999999983 2334566799
Q ss_pred HHHcCCCceeeecchhHhHHHHHHHhCCcccceeehh-hhhhhcCC---CCccHHHHHHHHcCCCC-CcccccccCCCCC
Q psy15183 387 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTH-QACKFLPM---PRQSLAYLLKHYCDVDS-DKTFQLFDWRHRP 461 (1973)
Q Consensus 387 ~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~-lAA~lLg~---~~~sLa~Lv~~ylgv~l-dK~~q~sDW~~RP 461 (1973)
++|+||+|+||||++++|+..|++.+|+.+.++|||+ +|+.++|. .+.||+.|+++++|+.+ +|..++|||.. |
T Consensus 102 ~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~-p 180 (206)
T 1vk0_A 102 RFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK-A 180 (206)
T ss_dssp HHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG-S
T ss_pred HHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC-c
Confidence 9999999999999999999999999999999999996 88888885 35899999999999999 55779999999 9
Q ss_pred CCchhHhHHHHhHHHHHHHHHHHHH
Q psy15183 462 LPEPAIQYARTDTHYLLYVYDCMKL 486 (1973)
Q Consensus 462 Ls~eql~YAa~Da~~Ll~L~d~L~~ 486 (1973)
|+++|+.|||.||+|++.||+.|..
T Consensus 181 Ls~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 181 GPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999964
No 18
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.89 E-value=2.8e-23 Score=235.17 Aligned_cols=174 Identities=21% Similarity=0.235 Sum_probs=150.7
Q ss_pred CcEEeCCHHHHH----HHHHHHhcCCeEEEEeeeccC--CccCCcEEEEEEEeC-CceEEEEccCccccHHHHHHHHcCC
Q psy15183 320 PLMMITEPEQVT----QLVSELKQQQEIAIDLEYHNY--RSYQGYTCLMQISTR-DKDYIVDTLKLREDLEVLNEVLTDK 392 (1973)
Q Consensus 320 ~~~~Idt~e~L~----~ll~~L~~~~~IavDtE~~~~--~s~~g~l~LIQIst~-~~~~lID~l~l~~~l~~L~~lL~dp 392 (1973)
++.+|+|.+++. ++++.+...+.+|+|+||.+. +++.+.+|++||++. +.+++||+..+...+..|+++|+|+
T Consensus 16 ~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~~~L~~lL~d~ 95 (208)
T 2e6m_A 16 SIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENK 95 (208)
T ss_dssp EEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCCHHHHHHHTCT
T ss_pred cEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccccchHHHHHHhcCC
Confidence 578999999998 556667777889999999886 567889999999985 5689998876654567899999999
Q ss_pred CceeeecchhHhHHHHHHHhCCcccceee-hhhhhhhcCC-CCccHHHHHHHHcCCCCCc--ccccccCCCCCCCchhHh
Q psy15183 393 NIVKVFHGADSDIKWLQKDFGLYVVGMFD-THQACKFLPM-PRQSLAYLLKHYCDVDSDK--TFQLFDWRHRPLPEPAIQ 468 (1973)
Q Consensus 393 ~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFD-T~lAA~lLg~-~~~sLa~Lv~~ylgv~ldK--~~q~sDW~~RPLs~eql~ 468 (1973)
.|.||+||+++|+.+|++++|+.+.++|| |++|+|+|+. .++||+.|+++|+|..+.| ..+++||..|||+++|+.
T Consensus 96 ~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~ 175 (208)
T 2e6m_A 96 SIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKL 175 (208)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHH
T ss_pred CceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHH
Confidence 99999999999999998789999999999 9999999985 4689999999999998844 678999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 469 YARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 469 YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
|||.||++++.||+.|.++|.+.|+
T Consensus 176 YAa~Da~~~~~L~~~L~~~L~~~~~ 200 (208)
T 2e6m_A 176 YAATDAYAGLIIYQKLGNLGDTVQV 200 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-----
T ss_pred HHHHHHHHHHHHHHHHHhccchhhh
Confidence 9999999999999999999998874
No 19
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.89 E-value=2.1e-22 Score=247.55 Aligned_cols=191 Identities=26% Similarity=0.382 Sum_probs=169.0
Q ss_pred CeEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeec
Q psy15183 1765 PLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFH 1844 (1973)
Q Consensus 1765 ~~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~H 1844 (1973)
++.+|++.+++..+++.+...+.||||+|+.+.+++.+.+|++||++++.+|++|+..+. .+..|+++|+|++|.||+|
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~-~~~~L~~ll~d~~i~Kv~h 80 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITKFLH 80 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTSEEEES
T ss_pred CeEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC-ChHHHHHHHcCCCceEEEe
Confidence 467899999999999998888899999999988888899999999998888999865543 4578999999999999999
Q ss_pred chHHHHHHHHHhcCCcccccchHHHHHHHCCCC-CCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHH
Q psy15183 1845 GADSDIKWLQKDFGLYVVGMFDTHQACKFLPMP-RQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 1923 (1973)
Q Consensus 1845 g~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~-~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL 1923 (1973)
|+++|+.+|++++|+.+.++|||++|+|+|+.. ++||+.|+++|||..++|..+.+||..|||+++|+.||+.||++++
T Consensus 81 ~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~ 160 (375)
T 1yt3_A 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL 160 (375)
T ss_dssp SCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHH
T ss_pred eHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999977999999999999999999975 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhhhcCC
Q psy15183 1924 YVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEK 1961 (1973)
Q Consensus 1924 ~Lyd~L~~eL~e~~~g~~~Ll~~V~~~s~~~~~~~y~k 1961 (1973)
.||+.|.++|.+. |+.+++ ++.+...|...+..
T Consensus 161 ~L~~~L~~~L~~~--g~~~l~---~~e~E~pl~~~~~~ 193 (375)
T 1yt3_A 161 PITAKLMVETEAS--GWLPAA---LDECRLMQMRRQEV 193 (375)
T ss_dssp HHHHHHHHHHHHT--TCHHHH---HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHc--CcHHHH---HHHHHHHHhhcccC
Confidence 9999999999877 777764 34444556665543
No 20
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.88 E-value=1.1e-21 Score=244.83 Aligned_cols=207 Identities=23% Similarity=0.286 Sum_probs=178.5
Q ss_pred CCCCCCCCCeEEeCCHHHHHHHHHHHhcC-ceeEEEeeeccCCccCCceeEEEEEeCCc-eEEEEcCCch---hhHHHHH
Q psy15183 1757 QALPLSDTPLMMITEPEQVTQLVSELKQQ-QEIAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLR---EDLEVLN 1831 (1973)
Q Consensus 1757 ~~~~~~~~~~~~Idt~e~L~~ll~~L~~a-~~IavDlE~~~~~s~~g~v~LlQISt~~~-~~iiD~l~l~---~~l~~L~ 1831 (1973)
.+.|.++++ .+|++.+++.++++.+... +.||||+|+.+.+++.+.+|+|||++.++ +|+||++.+. ..+..|+
T Consensus 10 l~~p~~~~~-~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~ 88 (440)
T 3cym_A 10 LAEPREGVP-NVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFN 88 (440)
T ss_dssp CCSCTTCCC-CEECSHHHHHHHHHHHHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCC-EeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHH
Confidence 355666666 5788899999999998877 88999999998877889999999998654 8888875432 2367899
Q ss_pred HHHcCCCceEeecchHHHHHHHHHhcCCcccccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHH
Q psy15183 1832 EVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPA 1911 (1973)
Q Consensus 1832 ~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eq 1911 (1973)
++|+|+ .||+|+++.|+.+|. ++|+.+.++|||++|+|+|+..++||+.|+++|||..++|..+.++|+.|||+++|
T Consensus 89 ~lL~d~--~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q 165 (440)
T 3cym_A 89 RAVGDA--VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 165 (440)
T ss_dssp HHHTTC--EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCSSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHH
T ss_pred HHHCCC--CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCCCCCHHHHHHHHhCCCcccccccCCCcCCCCCHHH
Confidence 999997 699999999999997 89999999999999999999778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhhhcCCCCCCccccccc
Q psy15183 1912 IQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI 1972 (1973)
Q Consensus 1912 i~YAa~DA~~LL~Lyd~L~~eL~e~~~g~~~Ll~~V~~~s~~~~~~~y~k~~~~~~~~~~~ 1972 (1973)
+.||+.||++++.||+.|..+|.+. |+..++. +++..+|...+.++...++.|..+
T Consensus 166 ~~YAa~Da~~Ll~L~~~L~~~L~~~--g~~~l~~---~e~~~l~~~~~~~~~~~~~~~~~~ 221 (440)
T 3cym_A 166 RNYAALDVELLIELETKMRAELKRQ--GKMEWAQ---EEFDYALKEGLGPRKEHLIPWMHV 221 (440)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHH--TCHHHHH---HHHHHHHHHHSSSCCCCSSGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CcHHHHH---HHHHHHhccccccCCCchHHHHHh
Confidence 9999999999999999999999987 7777654 556668888887666677777643
No 21
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.87 E-value=6.9e-22 Score=223.76 Aligned_cols=172 Identities=22% Similarity=0.259 Sum_probs=149.0
Q ss_pred CeEEeCCHHHHH----HHHHHHhcCceeEEEeeeccC--CccCCceeEEEEEeC-CceEEEEcCCchhhHHHHHHHHcCC
Q psy15183 1765 PLMMITEPEQVT----QLVSELKQQQEIAIDLEYHNY--RSYQGYTCLMQISTR-DKDYIVDTLKLREDLEVLNEVLTDK 1837 (1973)
Q Consensus 1765 ~~~~Idt~e~L~----~ll~~L~~a~~IavDlE~~~~--~s~~g~v~LlQISt~-~~~~iiD~l~l~~~l~~L~~lLedp 1837 (1973)
++.+|++.+++. .++..+...+.+|||+||.+. +++.+.+|++|||+. +.+++|++..+...+..|+++|+|+
T Consensus 16 ~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~~~L~~lL~d~ 95 (208)
T 2e6m_A 16 SIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENK 95 (208)
T ss_dssp EEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCCHHHHHHHTCT
T ss_pred cEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccccchHHHHHHhcCC
Confidence 588999999998 555666677889999999876 456789999999985 5688888766555567899999999
Q ss_pred CceEeecchHHHHHHHHHhcCCcccccch-HHHHHHHCCC-CCCcHHHHHHHHcCCCC--CcccccccCCCCCCCHHHHH
Q psy15183 1838 NIVKVFHGADSDIKWLQKDFGLYVVGMFD-THQACKFLPM-PRQSLAYLLKHYCDVDS--DKTFQLFDWRHRPLPEPAIQ 1913 (1973)
Q Consensus 1838 ~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfD-T~lAayLL~~-~~~sLa~La~~yLg~~l--~K~~q~sdW~~RPLs~eqi~ 1913 (1973)
.|.|||||++.|+.+|.+++|+.+.++|| |++|+|+|+. .++||+.|+++|||..+ +|..+.+||..|||+.+|+.
T Consensus 96 ~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~ 175 (208)
T 2e6m_A 96 SIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKL 175 (208)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHH
T ss_pred CceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHH
Confidence 99999999999999999779999999999 9999999985 56799999999999888 44678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1914 YARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1914 YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
|||.||++++.||+.|.++|.+.
T Consensus 176 YAa~Da~~~~~L~~~L~~~L~~~ 198 (208)
T 2e6m_A 176 YAATDAYAGLIIYQKLGNLGDTV 198 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999876
No 22
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.84 E-value=3.2e-21 Score=217.51 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=136.2
Q ss_pred EeCCHHHHHHHHHHH------hcCceeEEEeeeccCC------ccC--CceeEEEEEeCCceEEEEcCC-chhhHHHHHH
Q psy15183 1768 MITEPEQVTQLVSEL------KQQQEIAIDLEYHNYR------SYQ--GYTCLMQISTRDKDYIVDTLK-LREDLEVLNE 1832 (1973)
Q Consensus 1768 ~Idt~e~L~~ll~~L------~~a~~IavDlE~~~~~------s~~--g~v~LlQISt~~~~~iiD~l~-l~~~l~~L~~ 1832 (1973)
.|.+.+++..+++.+ .....||||+||.+.. ++. +.+|++|||+++.+++|+... +...+..|.+
T Consensus 23 ~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~~~~~~~L~~L~~ 102 (206)
T 1vk0_A 23 DVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYR 102 (206)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGHHHHH
T ss_pred EEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEeccccCCccHHHHHH
Confidence 455555566666555 4567899999997422 233 589999999999999998731 2334455889
Q ss_pred HHcCCCceEeecchHHHHHHHHHhcCCcccccchHH-HHHHHCCC---CCCcHHHHHHHHcCCCC-CcccccccCCCCCC
Q psy15183 1833 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTH-QACKFLPM---PRQSLAYLLKHYCDVDS-DKTFQLFDWRHRPL 1907 (1973)
Q Consensus 1833 lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~-lAayLL~~---~~~sLa~La~~yLg~~l-~K~~q~sdW~~RPL 1907 (1973)
+|+||+|+||||+++.|+..|+++||+.+.++|||. +|+..++. ...||+.|++++||+.+ +|..+++||.. ||
T Consensus 103 lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~-pL 181 (206)
T 1vk0_A 103 FFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK-AG 181 (206)
T ss_dssp HHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG-SC
T ss_pred HhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC-cC
Confidence 999999999999999999999999999999999986 78788884 46799999999999999 55779999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1908 PEPAIQYARTDTHYLLYVYDCMKL 1931 (1973)
Q Consensus 1908 s~eqi~YAa~DA~~LL~Lyd~L~~ 1931 (1973)
+++|+.|||.||++++.||+.|..
T Consensus 182 s~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 182 PEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999964
No 23
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=99.75 E-value=5.3e-20 Score=183.46 Aligned_cols=83 Identities=46% Similarity=0.773 Sum_probs=73.0
Q ss_pred cccccccceeHHHHhhcCCceeec-ccCCCCccccccccccccccccccccceEEEEEeceEEeecceEEeeCcEEEEEc
Q psy15183 1454 SENFHDFAVTQSDYQEKGGEFFRV-HPCSNNKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVAC 1532 (1973)
Q Consensus 1454 l~sf~~~~ITreeY~E~G~~il~r-k~~~n~~V~~~~~~k~~~~~~~~~~d~vw~f~~~~~~~~~~~~~~~~~~~kivac 1532 (1973)
.+..+...||++..++....|++. ..+++.+|+++++|| |+|+|||||||||||+++|++|+.+++.+++|+||||||
T Consensus 19 dEli~~~~Isp~la~kVL~~FDksi~~aL~~~vksk~sfK-G~L~tYrfcDnVWTf~lkd~~fk~~~~~~~~d~vKIVAC 97 (108)
T 1nvp_D 19 DELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVAC 97 (108)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHTCCCEEEEE-EEEEEEEEETTEEEEEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEe-eccCCccccCcEEEEEEeceEEEeccceeecCeEEEEEe
Confidence 366678999999999999999666 556678899999999 999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy15183 1533 DELSK 1537 (1973)
Q Consensus 1533 ~~~s~ 1537 (1973)
|++..
T Consensus 98 ~~~~~ 102 (108)
T 1nvp_D 98 DGKNT 102 (108)
T ss_dssp C----
T ss_pred CCCCC
Confidence 99974
No 24
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=99.73 E-value=2.9e-19 Score=180.46 Aligned_cols=83 Identities=31% Similarity=0.534 Sum_probs=74.9
Q ss_pred cccccccceeHHHHhhcCCceeec-ccCCCCccccccccccccccccccccceEEEEEeceEEeec--------------
Q psy15183 1454 SENFHDFAVTQSDYQEKGGEFFRV-HPCSNNKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFREV-------------- 1518 (1973)
Q Consensus 1454 l~sf~~~~ITreeY~E~G~~il~r-k~~~n~~V~~~~~~k~~~~~~~~~~d~vw~f~~~~~~~~~~-------------- 1518 (1973)
.+.++...||++..+++...|++. ..+++.+|+++++|| |+|+|||||||||||+++|++|+.+
T Consensus 23 dEli~~~~Isp~la~kVL~~FDksi~~aL~~~vksk~sfK-G~L~tYrfcDnVWtfilkd~~fk~~~~~~~~~~~~~~~~ 101 (121)
T 1nh2_D 23 DTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVK-GNLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDS 101 (121)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHSCCCEEEEE-EEEEEEEEETTEEEEEEEEEEEEEEC-------------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEE-eeeccccccCcEEEEEEeceEEEeccccccccccccccC
Confidence 366678999999999999999666 555678899999999 9999999999999999999999987
Q ss_pred ceEEeeCcEEEEEcCCCCC
Q psy15183 1519 AEIARVNKLKIVACDELSK 1537 (1973)
Q Consensus 1519 ~~~~~~~~~kivac~~~s~ 1537 (1973)
++.++||+|||||||+|..
T Consensus 102 ~~~~~vdkvKIVAC~~k~~ 120 (121)
T 1nh2_D 102 QSVISVDKLRIVACNSKKS 120 (121)
T ss_dssp CEEEEEEEEEEEEEESSCC
T ss_pred CceeecceEEEEEeCCCCC
Confidence 6889999999999999864
No 25
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.65 E-value=1.1e-15 Score=198.71 Aligned_cols=182 Identities=20% Similarity=0.253 Sum_probs=152.0
Q ss_pred CCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEe-CCceEEEEccC--------c--cccHHHHHH
Q psy15183 319 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST-RDKDYIVDTLK--------L--REDLEVLNE 387 (1973)
Q Consensus 319 ~~~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst-~~~~~lID~l~--------l--~~~l~~L~~ 387 (1973)
..|.+|++.+++.++++.+...+.+++|+|+.+.+++.+.+++||++. .+..++|.+.. + ...+..|.+
T Consensus 5 ~~y~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~~ 84 (605)
T 2kfn_A 5 DNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84 (605)
T ss_dssp SSSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHH
T ss_pred hheEEecCHHHHHHHHHhcccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHHH
Confidence 457889999999999999888888999999999988899999999997 44455552211 1 123467999
Q ss_pred HHcCCCceeeecchhHhHHHHHHHhCCcccc-eeehhhhhhhcCCC--CccHHHHHHHHcCCCC-------CcccccccC
Q psy15183 388 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVG-MFDTHQACKFLPMP--RQSLAYLLKHYCDVDS-------DKTFQLFDW 457 (1973)
Q Consensus 388 lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~n-lFDT~lAA~lLg~~--~~sLa~Lv~~ylgv~l-------dK~~q~sDW 457 (1973)
+|+|+++.||+||+++|+.+| +.+|+.+.+ +|||++|+|+|+.. +++|+.|+++|||+.. .|+.+.++|
T Consensus 85 ~L~d~~i~kV~hnak~D~~~L-~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~ 163 (605)
T 2kfn_A 85 LLEDEKALKVGQNLKYDRGIL-ANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTF 163 (605)
T ss_dssp HHTCTTSCEEESSHHHHHHHH-HTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCG
T ss_pred HHcCCCCeEEEECcHHHHHHH-HHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCc
Confidence 999999999999999999999 568999876 89999999999853 6999999999998875 355556689
Q ss_pred CCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHH-hcCCCcchhHHHHHHHHH
Q psy15183 458 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA-AAHGKQNLVLSTFTNSRN 508 (1973)
Q Consensus 458 ~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e-~g~~~~~~l~~v~~e~e~ 508 (1973)
..+|+ +++..||+.||.+++.||..|..+|.+ .| +..+|.++|.
T Consensus 164 ~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~------l~~L~~~iE~ 208 (605)
T 2kfn_A 164 NQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKG------PLNVFENIEM 208 (605)
T ss_dssp GGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHH------HHHHHHHTHH
T ss_pred ccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHh
Confidence 88888 679999999999999999999999987 76 5668887764
No 26
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.64 E-value=4.9e-15 Score=173.64 Aligned_cols=151 Identities=14% Similarity=0.035 Sum_probs=117.5
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHHHHH
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFD 948 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i~~ 948 (1973)
-.++||+||.++|+.+...+. .. ++. | .....|+.+|.+.||+.++.+|+
T Consensus 29 ~~~gIDiGS~s~k~vi~~~~~-~~-----l~~--------------~----------~~~~~~l~~g~i~d~~~~~~~l~ 78 (272)
T 3h1q_A 29 YKVGVDLGTADIVLVVTDQEG-IP-----VAG--------------A----------LKWASVVKDGLVVDYIGAIQIVR 78 (272)
T ss_dssp CEEEEECCSSEEEEEEECTTC-CE-----EEE--------------E----------EEECCCCBTTBCTTHHHHHHHHH
T ss_pred EEEEEEcccceEEEEEECCCC-cE-----EEE--------------E----------eecccccCCCEEEcHHHHHHHHH
Confidence 368999999999999853321 11 111 1 12346889999999999999999
Q ss_pred HHHhh----cCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCCCceEEEEeeCCCc
Q psy15183 949 YAFSH----LSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQC 1024 (1973)
Q Consensus 949 ~if~~----L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g~~tgLVVDiG~s~ 1024 (1973)
+++.. ++.. ...++++.|.......| .+.+.+|+.+|++...+..++.+++++.|. .+++|||+|+++
T Consensus 79 ~~~~~~~~~~~~~-----~~~~v~tvp~~~~~~~~-~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~--~~~~viDiGggs 150 (272)
T 3h1q_A 79 ELKAKVERLLGSE-----LFQAATAIPPGTVGRNA-EACGHVVAGAGLELVTLVDEPVAAARALGI--NDGIVVDIGGGT 150 (272)
T ss_dssp HHHHHHHHHSSSC-----CCEEEEECCSCC---CT-THHHHHHHHTTCEEEEEECHHHHHHHHHTC--SSEEEEEECSSC
T ss_pred HHHHHHHHhcCCc-----cCeEEEEcCCCCCHHHH-HHHHHHHHHcCCeeeecccHHHHHHHHHcC--CCEEEEEECCCc
Confidence 99853 2332 23567777766655544 456668999999999999999999999999 899999999999
Q ss_pred eEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHh
Q psy15183 1025 THVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQ 1059 (1973)
Q Consensus 1025 T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~ 1059 (1973)
|.++++.+|.++. ...+++||.++++.+.+.|.
T Consensus 151 t~~~~~~~g~~~~--~~~~~~Gg~~~~~~l~~~l~ 183 (272)
T 3h1q_A 151 TGIAVIEKGKITA--TFDEPTGGTHLSLVLAGSYK 183 (272)
T ss_dssp EEEEEEETTEEEE--ECCBSCCHHHHHHHHHHHHT
T ss_pred EEEEEEECCEEEE--EecCCCcHHHHHHHHHHHhC
Confidence 9999999999884 46789999999999988873
No 27
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.60 E-value=7.8e-15 Score=190.62 Aligned_cols=179 Identities=20% Similarity=0.244 Sum_probs=146.8
Q ss_pred CCeEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEe-CCceEEEEcCC----------chhhHHHHHH
Q psy15183 1764 TPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST-RDKDYIVDTLK----------LREDLEVLNE 1832 (1973)
Q Consensus 1764 ~~~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt-~~~~~iiD~l~----------l~~~l~~L~~ 1832 (1973)
..+.+|++.+++.++++.+...+.++||+|+.+.+++.+.++++|++. .+..+++.... ....+..|.+
T Consensus 5 ~~y~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~~ 84 (605)
T 2kfn_A 5 DNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84 (605)
T ss_dssp SSSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHH
T ss_pred hheEEecCHHHHHHHHHhcccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHHH
Confidence 357788888999999999888888999999999888889999999997 44455552211 1223568999
Q ss_pred HHcCCCceEeecchHHHHHHHHHhcCCcccc-cchHHHHHHHCCC--CCCcHHHHHHHHcCCCC-------CcccccccC
Q psy15183 1833 VLTDKNIVKVFHGADSDIKWLQKDFGLYVVG-MFDTHQACKFLPM--PRQSLAYLLKHYCDVDS-------DKTFQLFDW 1902 (1973)
Q Consensus 1833 lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~n-lfDT~lAayLL~~--~~~sLa~La~~yLg~~l-------~K~~q~sdW 1902 (1973)
+|+|+++.||+||+++|+.+|. .+|+.+.+ +|||++|+|+|+. .+++|+.|+++|||... .|..+.++|
T Consensus 85 ~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~ 163 (605)
T 2kfn_A 85 LLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTF 163 (605)
T ss_dssp HHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCG
T ss_pred HHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCc
Confidence 9999999999999999999998 58999887 8999999999985 36899999999998765 244455588
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCcHHHHHH
Q psy15183 1903 RHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA-AAHGKQNLVLS 1946 (1973)
Q Consensus 1903 ~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e-~~~g~~~Ll~~ 1946 (1973)
..+|+ +++..||+.||.+++.||+.|.++|.+ . ++..++.+
T Consensus 164 ~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~--~l~~L~~~ 205 (605)
T 2kfn_A 164 NQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHK--GPLNVFEN 205 (605)
T ss_dssp GGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHHHHH
T ss_pred ccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 77777 678999999999999999999999986 5 55565544
No 28
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.59 E-value=2e-15 Score=194.15 Aligned_cols=181 Identities=10% Similarity=-0.011 Sum_probs=147.0
Q ss_pred CCCCCCCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCC
Q psy15183 313 ALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDK 392 (1973)
Q Consensus 313 ~~p~~~~~~~~Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp 392 (1973)
..|+-...+..++..++ .+ -....++|+|+.+.+++.+.+|++|+++.++.|+|++.. ...+..|+++|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~--~~-----~~~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~-~~~l~~Lk~lLed~ 80 (592)
T 3pv8_A 9 EKPLAKMAFTLADRVTE--EM-----LADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPET-ALADPQFVAWLGDE 80 (592)
T ss_dssp -----CCCCEECSSCCG--GG-----GCSEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHH-HTTCHHHHHHHTCT
T ss_pred hhhHHHhHHHHhhccch--hh-----hccCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccch-hhHHHHHHHHHhCC
Confidence 35566666667665433 11 235679999999999999999999999988888876432 23567899999999
Q ss_pred CceeeecchhHhHHHHHHHhCCccc-ceeehhhhhhhcCC--CCccHHHHHHHHcCCCCCcccccccCCC---CCCCchh
Q psy15183 393 NIVKVFHGADSDIKWLQKDFGLYVV-GMFDTHQACKFLPM--PRQSLAYLLKHYCDVDSDKTFQLFDWRH---RPLPEPA 466 (1973)
Q Consensus 393 ~I~KV~H~ak~Dl~~L~r~~Gi~~~-nlFDT~lAA~lLg~--~~~sLa~Lv~~ylgv~ldK~~q~sDW~~---RPLs~eq 466 (1973)
++.||+||+|+|+.+| +.+|+.+. .+||||+|+|+|+. .+++|++|+.+|+|+.+++..+..+|.. +|..+.+
T Consensus 81 ~i~KV~hn~K~Dl~vL-~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~ 159 (592)
T 3pv8_A 81 TKKKSMFDSKRAAVAL-KWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVL 159 (592)
T ss_dssp TSEEEESSHHHHHHHH-HHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHH
T ss_pred CCeEEEechHHHHHHH-HHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHH
Confidence 9999999999999999 57899984 68999999999985 3689999999999999999888888864 5566778
Q ss_pred HhHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q psy15183 467 IQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRN 508 (1973)
Q Consensus 467 l~YAa~Da~~Ll~L~d~L~~~L~e~g~~~~~~l~~v~~e~e~ 508 (1973)
..||+.||.+++.||+.|..+|.+.+ +..+|.++|-
T Consensus 160 ~~YAa~DA~~l~~L~~~L~~~L~e~~------l~~l~~~~E~ 195 (592)
T 3pv8_A 160 AEHLVRKAAAIWELERPFLDELRRNE------QDRLLVELEQ 195 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT------CHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcch------hhhHHHHHHh
Confidence 89999999999999999999999876 5678877664
No 29
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.58 E-value=1.1e-15 Score=195.39 Aligned_cols=182 Identities=17% Similarity=0.116 Sum_probs=131.7
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceecccccccccc-c---cEEe----ecc
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAV-R---FQLK----TQF 932 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~-~---~~l~----~Pi 932 (1973)
.+|.||+||.++++|++.+..|..+ +||+|+.. . ...++|+++...... . ..++ +|+
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~---~----~~~~vG~~A~~~~~~~p~~~~~~Kr~lg~p~ 75 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFK---N----GERLVGEVAKRQAITNPNTIISIKRHMGTDY 75 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEES---S----SSEEESHHHHTTTTTCSSEEECGGGTTTSCC
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEEC---C----CcEEECHHHHHhHHhCCCcHHHHHHhcCCCc
Confidence 4799999999999999988888877 89999982 1 135899988543211 0 1111 266
Q ss_pred c---CCcccCHHHHHHHHHHHHhhcCcCCC---CCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhh
Q psy15183 933 D---KNVVTHYDIQEQIFDYAFSHLSINTE---GNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQ 1006 (1973)
Q Consensus 933 ~---~G~V~dwd~le~i~~~if~~L~i~~~---~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~y 1006 (1973)
. +|. +|. .+.++.++|.+|....+ +.....+++|.|..++...|+.+.+. ++..|++.+.+..++.+|++
T Consensus 76 ~~~~~g~--~~~-~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a-~~~AGl~~~~li~Ep~AAAl 151 (509)
T 2v7y_A 76 KVEIEGK--QYT-PQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDA-GRIAGLEVERIINEPTAAAL 151 (509)
T ss_dssp CEEETTE--EEC-HHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHH
T ss_pred EEEECCE--EEc-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecCHHHHHH
Confidence 5 664 333 45555555543321100 00136899999999999999999886 59999999999999999999
Q ss_pred hcCCC---CceEEEEeeCCCceEEEEee--cCEE-ccCCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 1007 YNGWE---GQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1007 a~G~g---~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
++|.. ..+.+|+|+|+++|+|+.+. +|.. +.......++||.+++..|.+.|..+
T Consensus 152 ay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~ 212 (509)
T 2v7y_A 152 AYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQ 212 (509)
T ss_dssp HTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 88761 35899999999999999775 4643 22234456899999999999888544
No 30
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.52 E-value=2.8e-14 Score=183.46 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=142.4
Q ss_pred CCCCCCeEEeCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCc
Q psy15183 1760 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNI 1839 (1973)
Q Consensus 1760 ~~~~~~~~~Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I 1839 (1973)
|+-+..+..++..++ .+ + ....++|+|..+.+++.+.+|++|+++.++.|+++.. ....+..|+++|+|+++
T Consensus 11 ~~~~~~~~~~~~~~~--~~---~--~~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~-~~~~l~~Lk~lLed~~i 82 (592)
T 3pv8_A 11 PLAKMAFTLADRVTE--EM---L--ADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPE-TALADPQFVAWLGDETK 82 (592)
T ss_dssp ---CCCCEECSSCCG--GG---G--CSEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHH-HHTTCHHHHHHHTCTTS
T ss_pred hHHHhHHHHhhccch--hh---h--ccCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccc-hhhHHHHHHHHHhCCCC
Confidence 344445666654333 11 2 3557999999988889999999999998877776532 12345789999999999
Q ss_pred eEeecchHHHHHHHHHhcCCcccc-cchHHHHHHHCCC--CCCcHHHHHHHHcCCCCCcccccccCCC---CCCCHHHHH
Q psy15183 1840 VKVFHGADSDIKWLQKDFGLYVVG-MFDTHQACKFLPM--PRQSLAYLLKHYCDVDSDKTFQLFDWRH---RPLPEPAIQ 1913 (1973)
Q Consensus 1840 ~KV~Hg~K~Di~~Lqr~~GI~l~n-lfDT~lAayLL~~--~~~sLa~La~~yLg~~l~K~~q~sdW~~---RPLs~eqi~ 1913 (1973)
.||+||+|+|+.+|. .+|+.+.+ +||||+|+|+|+. .+++|+.|+++|||..+.+..+..+|+. .+..+.+..
T Consensus 83 ~KV~hn~K~Dl~vL~-~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~ 161 (592)
T 3pv8_A 83 KKSMFDSKRAAVALK-WKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAE 161 (592)
T ss_dssp EEEESSHHHHHHHHH-HTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHH
T ss_pred eEEEechHHHHHHHH-HcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHH
Confidence 999999999999998 58999875 8999999999984 4789999999999999988888888854 455577889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH
Q psy15183 1914 YARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLST 1947 (1973)
Q Consensus 1914 YAa~DA~~LL~Lyd~L~~eL~e~~~g~~~Ll~~V 1947 (1973)
||+.||+++++||+.|.++|.+. ++..+|.++
T Consensus 162 YAa~DA~~l~~L~~~L~~~L~e~--~l~~l~~~~ 193 (592)
T 3pv8_A 162 HLVRKAAAIWELERPFLDELRRN--EQDRLLVEL 193 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--hhhhHHHHH
Confidence 99999999999999999999876 787777664
No 31
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.52 E-value=2.8e-14 Score=175.46 Aligned_cols=180 Identities=15% Similarity=0.090 Sum_probs=122.5
Q ss_pred eEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceecccccccccc--ccEE-----------
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAV--RFQL----------- 928 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~--~~~l----------- 928 (1973)
.|=||+||.++.+++..+..|..+ +||+|+..... ..++|+++...... ...+
T Consensus 4 ~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~------~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~ 77 (383)
T 1dkg_D 4 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDG------ETLVGQPAKRQAVTNPQNTLFAIKRLIGRRF 77 (383)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTS------CEEESHHHHTTSTTCGGGEEECGGGTTTCBS
T ss_pred EEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCC------CEEECHHHHHhhhhCccceeehhHHhhCCCC
Confidence 578999999999999866656544 68888774321 23566665322100 0000
Q ss_pred ----------eeccc-------------CCc-ccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHH
Q psy15183 929 ----------KTQFD-------------KNV-VTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRS 980 (1973)
Q Consensus 929 ----------~~Pi~-------------~G~-V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re 980 (1973)
.+|+. +|. +.-.+....+++++. ..++.. ...++++.|..++...|+
T Consensus 78 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~~-----~~~~vitvP~~~~~~~r~ 152 (383)
T 1dkg_D 78 QDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEP-----VTEAVITVPAYFNDAQRQ 152 (383)
T ss_dssp CSHHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSC-----CCEEEECBCTTCCHHHHH
T ss_pred CcHHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCC-----CCeEEEEECCCCCHHHHH
Confidence 02331 232 222344455555554 235433 247999999999999999
Q ss_pred HHHHHHHHhcCCCeEeechhhHHhhhhcCCC----CceEEEEeeCCCceEEEEeecC------EEcc-CCcEEeeccHHH
Q psy15183 981 LMSELLFECYQVPSVCYGIDSLFSYQYNGWE----GQSGVIISCGYQCTHVIPVING------CIDA-SKAKRIDLGGFS 1049 (1973)
Q Consensus 981 ~l~ElLFE~~~vpav~~~~~sllS~ya~G~g----~~tgLVVDiG~s~T~V~PV~dG------~vl~-~si~rl~vGG~~ 1049 (1973)
.+.+. ++..|++.+.+..++++|+++++.. ..+.+|||+|+++|+|+.+..| .... ......++||.+
T Consensus 153 ~~~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~ 231 (383)
T 1dkg_D 153 ATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED 231 (383)
T ss_dssp HHHHH-HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHH
T ss_pred HHHHH-HHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHH
Confidence 99886 5899999999999999999888751 2479999999999999977644 2211 123446899999
Q ss_pred HHHHHHHHHhhh
Q psy15183 1050 VIHHLHKLLQLK 1061 (1973)
Q Consensus 1050 lt~~L~~lL~~k 1061 (1973)
+++.|.++|..+
T Consensus 232 id~~l~~~l~~~ 243 (383)
T 1dkg_D 232 FDSRLINYLVEE 243 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888644
No 32
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.51 E-value=4.5e-14 Score=173.98 Aligned_cols=180 Identities=15% Similarity=0.085 Sum_probs=122.9
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceecccccccccc-ccEEeecccCCc--
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAV-RFQLKTQFDKNV-- 936 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~-~~~l~~Pi~~G~-- 936 (1973)
..+|.||+||.+++++++.+..|..+ +||+|+.... ..++|+++...... .....+.+.+.+
T Consensus 18 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-------~~~vG~~A~~~~~~~~~~~~~~~k~~lg~ 90 (394)
T 3qfu_A 18 GTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDD-------ERLIGDAAKNQVAANPQNTIFDIKRLIGL 90 (394)
T ss_dssp CSCEEEEECSSEEEEEEECSSCEEECCCTTSCSSEECCEEECSS-------CEEESHHHHHTGGGCGGGEECCGGGTTTC
T ss_pred CCEEEEEeCcCcEEEEEEECCeeEEEECCCCCEeeceEEEEeCC-------cEEecHHHHHhhHhCcccCHHHHHHHhCC
Confidence 45799999999999999988777643 2777776532 24778776432111 111112222111
Q ss_pred -------------------------------------ccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCc
Q psy15183 937 -------------------------------------VTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNP 975 (1973)
Q Consensus 937 -------------------------------------V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p 975 (1973)
+.--+....++.++. .+++.. -..++++.|..++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~a~~l~~l~~~a~~~~~~~-----~~~~vitvP~~~~ 165 (394)
T 3qfu_A 91 KYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYLGTK-----VTHAVVTVPAYFN 165 (394)
T ss_dssp CTTCHHHHHHHTTCSSEEEEETTEEEEEEESSSSEEEECHHHHHHHHHHHHHHHHHHHHTSC-----CCEEEEEECTTCC
T ss_pred CCCcHHHHHHhhcCCeEEEcCCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHhcCCC-----cceEEEEECCCCC
Confidence 111233344444443 244533 3589999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC----CceEEEEeeCCCceEEEEee--cCEEccCCc-EEeeccHH
Q psy15183 976 NYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE----GQSGVIISCGYQCTHVIPVI--NGCIDASKA-KRIDLGGF 1048 (1973)
Q Consensus 976 ~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g----~~tgLVVDiG~s~T~V~PV~--dG~vl~~si-~rl~vGG~ 1048 (1973)
...|+.+.+.+ +..|++.+.+..++++|+++++.. ..+.+|||+|+++|.|+.+. +|.....+. ...++||.
T Consensus 166 ~~~r~~~~~a~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~ 244 (394)
T 3qfu_A 166 DAQRQATKDAG-TIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGE 244 (394)
T ss_dssp HHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHH
T ss_pred HHHHHHHHHHH-HHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChH
Confidence 99999888776 999999999999999999988761 34569999999999777664 554332233 33789999
Q ss_pred HHHHHHHHHHhh
Q psy15183 1049 SVIHHLHKLLQL 1060 (1973)
Q Consensus 1049 ~lt~~L~~lL~~ 1060 (1973)
+++..|.+.|..
T Consensus 245 ~~d~~l~~~l~~ 256 (394)
T 3qfu_A 245 DFDYKIVRQLIK 256 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 33
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.37 E-value=1.4e-12 Score=161.43 Aligned_cols=180 Identities=17% Similarity=0.087 Sum_probs=121.8
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceeccccccccc-cccEEeecccCCc--
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEA-VRFQLKTQFDKNV-- 936 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~-~~~~l~~Pi~~G~-- 936 (1973)
..+|-||+||.+++++++.+..|..+ +||+|+.... ..++|+++..... ......+.+.+.+
T Consensus 23 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-------~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~ 95 (404)
T 3i33_A 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-------ERLIGDAAKNQVAMNPTNTIFDAKRLIGR 95 (404)
T ss_dssp CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-------CEEETHHHHHTTTTCSTTEECCGGGTTTC
T ss_pred CCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC-------CEEecHHHHHhhHhChhhhHHHHHHHhCC
Confidence 45799999999999999977766432 3666665422 3477877743221 1111222222211
Q ss_pred -------------------------------------ccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCc
Q psy15183 937 -------------------------------------VTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNP 975 (1973)
Q Consensus 937 -------------------------------------V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p 975 (1973)
+.-.+....++.++. ..++... ..++||.|..++
T Consensus 96 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~-----~~~vitvPa~~~ 170 (404)
T 3i33_A 96 KFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKV-----HSAVITVPAYFN 170 (404)
T ss_dssp CTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCC-----CEEEEEECTTCC
T ss_pred CCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCC-----CcEEEEECCCCC
Confidence 111233344444443 2344433 479999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC-------CceEEEEeeCCCceEEEEee--cCEE-ccCCcEEeec
Q psy15183 976 NYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE-------GQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDL 1045 (1973)
Q Consensus 976 ~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g-------~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~rl~v 1045 (1973)
...|+.+.+. ++..|++.+.+..++.+|+++++.. ..+.+|||+|+++|.|+.+- +|.. +.......++
T Consensus 171 ~~~r~~~~~a-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~l 249 (404)
T 3i33_A 171 DSQRQATKDA-GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 249 (404)
T ss_dssp HHHHHHHHHH-HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTC
T ss_pred HHHHHHHHHH-HHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCC
Confidence 9999988776 7999999999999999999988751 23559999999999998773 4433 2223344789
Q ss_pred cHHHHHHHHHHHHhh
Q psy15183 1046 GGFSVIHHLHKLLQL 1060 (1973)
Q Consensus 1046 GG~~lt~~L~~lL~~ 1060 (1973)
||.+++..|.+.|..
T Consensus 250 GG~~~d~~l~~~l~~ 264 (404)
T 3i33_A 250 GGEDFDNRMVSHLAE 264 (404)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888743
No 34
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.27 E-value=2.1e-12 Score=170.32 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=123.0
Q ss_pred EEEEeeeccCCccCCcEEEEEEEe--CCceEEEEccCccccHHHHHHHHcCCCceeeecch-hHhHHHHHHHh------C
Q psy15183 343 IAIDLEYHNYRSYQGYTCLMQIST--RDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA-DSDIKWLQKDF------G 413 (1973)
Q Consensus 343 IavDtE~~~~~s~~g~l~LIQIst--~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~a-k~Dl~~L~r~~------G 413 (1973)
++||+|+.++..+.+.+|++||.. .+..++||+..+...+..|.++|+ +.+.||+||+ ++|+.+|.+.+ |
T Consensus 2 vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~G 80 (698)
T 1x9m_A 2 IVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNRE 80 (698)
T ss_dssp EEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCCC
T ss_pred EEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccCC
Confidence 799999999998889999999998 446889998876556889999999 9999999999 99999997664 8
Q ss_pred Cccc--ceeehhhhhhhcCC--CCccHHHHHHHHc-------CCCC-----C-----------ccc--cc-ccCCCCCCC
Q psy15183 414 LYVV--GMFDTHQACKFLPM--PRQSLAYLLKHYC-------DVDS-----D-----------KTF--QL-FDWRHRPLP 463 (1973)
Q Consensus 414 i~~~--nlFDT~lAA~lLg~--~~~sLa~Lv~~yl-------gv~l-----d-----------K~~--q~-sDW~~RPLs 463 (1973)
+.+. .+||||+|+|+|+. .+++|+.|+.+|| |..+ + |+. +. .+|.. ++
T Consensus 81 i~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~ 158 (698)
T 1x9m_A 81 FHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN--FN 158 (698)
T ss_dssp CCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--CC
T ss_pred ccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc--cC
Confidence 8765 68999999999984 3689999999998 4322 1 211 21 27864 66
Q ss_pred chhHhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 464 EPAIQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 464 ~eql~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
+++.+||+.||.+++.||+.|..+|.+.+
T Consensus 159 ~~~~~YA~~Da~~t~~L~~~L~~~L~~~~ 187 (698)
T 1x9m_A 159 EEMMDYNVQDVVVTKALLEKLLSDKHYFP 187 (698)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999998876
No 35
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.19 E-value=1.6e-11 Score=161.81 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=120.9
Q ss_pred eeEEEeeeccCCccCCceeEEEEEeC--CceEEEEcCCchhhHHHHHHHHcCCCceEeecch-HHHHHHHHHhc------
Q psy15183 1787 EIAIDLEYHNYRSYQGYTCLMQISTR--DKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA-DSDIKWLQKDF------ 1857 (1973)
Q Consensus 1787 ~IavDlE~~~~~s~~g~v~LlQISt~--~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~-K~Di~~Lqr~~------ 1857 (1973)
.|+||+|+.++..+.+.+|++|+... +..++|++..+...+..|.++|+ +.+.||+||+ ++|+.+|.+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~ 79 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNR 79 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccC
Confidence 37999999999888899999999973 46778887766666889999999 9999999999 99999998653
Q ss_pred CCccc--ccchHHHHHHHCCC--CCCcHHHHHHHHc-------CCCC-----C-----------ccc--cc-ccCCCCCC
Q psy15183 1858 GLYVV--GMFDTHQACKFLPM--PRQSLAYLLKHYC-------DVDS-----D-----------KTF--QL-FDWRHRPL 1907 (1973)
Q Consensus 1858 GI~l~--nlfDT~lAayLL~~--~~~sLa~La~~yL-------g~~l-----~-----------K~~--q~-sdW~~RPL 1907 (1973)
|+.+. .+||||+|+|+|+. .+++|+.|+++|| |..+ + |.. +. .+|.. +
T Consensus 80 Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~ 157 (698)
T 1x9m_A 80 EFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN--F 157 (698)
T ss_dssp CCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--C
T ss_pred CccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc--c
Confidence 98877 48999999999984 4789999999998 4222 1 111 21 27864 6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1908 PEPAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1908 s~eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
++++..||+.||.+++.||+.|..+|.+.
T Consensus 158 ~~~~~~YA~~Da~~t~~L~~~L~~~L~~~ 186 (698)
T 1x9m_A 158 NEEMMDYNVQDVVVTKALLEKLLSDKHYF 186 (698)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999999999999999766
No 36
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.10 E-value=7.6e-11 Score=150.32 Aligned_cols=132 Identities=8% Similarity=-0.008 Sum_probs=112.9
Q ss_pred CeEEEEeeeccCCccCCcEEEEEEEeCCceEEEEccCccccHHHHHHHHcCCCceeeecchhHhHHHHHHHhCCccccee
Q psy15183 341 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 420 (1973)
Q Consensus 341 ~~IavDtE~~~~~s~~g~l~LIQIst~~~~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~nlF 420 (1973)
+.+++|||+.+.+++.+.+|++|++..+..|+++ ..+..|.++|+| +.||+||+++|+. .+|+.+..+|
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~-----~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~~f 79 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP-----EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPPGD 79 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS-----SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCBCC
T ss_pred CceEEEEEecCCccCcccEEEEEEEcCCEEEEeh-----hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCCcce
Confidence 3599999999999999999999999988888765 356789999998 8899999999999 6788877889
Q ss_pred ehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHH-HHhcCCCcchh
Q psy15183 421 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL-SAAAHGKQNLV 499 (1973)
Q Consensus 421 DT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L-~e~g~~~~~~l 499 (1973)
|||+|||+|+..+++|+.|+++|++. |.. +|..||.+++.||+.|.++| .+.+ +
T Consensus 80 DT~laAyLL~p~~~~L~~La~~yl~~----------~gk---------~a~~DA~~t~~L~~~L~~~L~~~~~------~ 134 (540)
T 4dfk_A 80 DPMLLAYLLDPSNTTPEGVARRYGGE----------WTE---------EAGERAALSERLFANLWGRLEGEER------L 134 (540)
T ss_dssp CHHHHHHHHCTTCCCHHHHHHHHTSC----------CCS---------CHHHHHHHHHHHHHHHHHHTTTCHH------H
T ss_pred eHHHHHHHhCCCCCCHHHHHHHHhhh----------hcc---------chHHHHHHHHHHHHHHHHHHHhhhh------h
Confidence 99999999986589999999999986 221 37799999999999999999 5555 6
Q ss_pred HHHHHHHHH
Q psy15183 500 LSTFTNSRN 508 (1973)
Q Consensus 500 ~~v~~e~e~ 508 (1973)
..+|.++|-
T Consensus 135 ~~~~~~iE~ 143 (540)
T 4dfk_A 135 LWLYREVER 143 (540)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHHHh
Confidence 778877664
No 37
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.05 E-value=1.7e-09 Score=139.47 Aligned_cols=179 Identities=15% Similarity=0.065 Sum_probs=121.6
Q ss_pred ceEEEEcCcceEEEEEeCCCCccE--------EEecceeeccCCCCCccccceecccccccccc--ccEEe---------
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNL--------IFKNLIAKPRKERGKKDGETQVGNDISNIEAV--RFQLK--------- 929 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~--------i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~--~~~l~--------- 929 (1973)
.+|=||+|+.++.+++.....|.. .+||+|+.... ..++|++|...... ...+.
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-------~~~vG~~A~~~~~~~p~~ti~~~KrllG~~ 77 (554)
T 1yuw_A 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-------ERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 77 (554)
T ss_dssp CCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS-------CEEETHHHHTTTTTCGGGEECCGGGTTTCC
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC-------cEEEcHHHHHhhhhChhhehHhhHHhcCCC
Confidence 368899999999999986654432 35888876532 24678776432110 00000
Q ss_pred ------------eccc----CCc-------------ccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcH
Q psy15183 930 ------------TQFD----KNV-------------VTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPN 976 (1973)
Q Consensus 930 ------------~Pi~----~G~-------------V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~ 976 (1973)
+|+. +|. +.-.+....++.++. ..|+... ..++||.|..++.
T Consensus 78 ~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v-----~~~VitVPa~f~~ 152 (554)
T 1yuw_A 78 FDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTV-----TNAVVTVPAYFND 152 (554)
T ss_dssp SSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCC-----CEEEEEECTTCCH
T ss_pred CCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEEECCCCCH
Confidence 1110 111 111334445555543 3455332 4799999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC-----CceEEEEeeCCCceEEEEee--cCEE-ccCCcEEeeccHH
Q psy15183 977 YSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE-----GQSGVIISCGYQCTHVIPVI--NGCI-DASKAKRIDLGGF 1048 (1973)
Q Consensus 977 ~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g-----~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~rl~vGG~ 1048 (1973)
..|+.+.+ .++..|++.+.+..++.+|++++|.. ..+.+|+|+|+++|.|+.+. +|.. +.......++||.
T Consensus 153 ~qr~a~~~-A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~ 231 (554)
T 1yuw_A 153 SQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGE 231 (554)
T ss_dssp HHHHHHHH-HHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHH
T ss_pred HHHHHHHH-HHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHH
Confidence 99998887 56889999999999999999888751 36799999999999999876 6754 2333445689999
Q ss_pred HHHHHHHHHHhh
Q psy15183 1049 SVIHHLHKLLQL 1060 (1973)
Q Consensus 1049 ~lt~~L~~lL~~ 1060 (1973)
+++..|.+.|..
T Consensus 232 d~d~~l~~~l~~ 243 (554)
T 1yuw_A 232 DFDNRMVNHFIA 243 (554)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887753
No 38
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.00 E-value=2.2e-09 Score=139.81 Aligned_cols=180 Identities=16% Similarity=0.099 Sum_probs=120.8
Q ss_pred eEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceecccccccccc--ccEE-----------
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAV--RFQL----------- 928 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~--~~~l----------- 928 (1973)
.|=||+||.++.+++.....|..+ +||+|+.... ...++|++|...... ...+
T Consensus 4 viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~------~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~ 77 (605)
T 2kho_A 4 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD------GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRF 77 (605)
T ss_dssp CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTT------SCEEESHHHHTTTTTCGGGEEECGGGTTTCBS
T ss_pred EEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECC------CcEEECHHHHHHhhhCCCCEeehhhHhhCCCC
Confidence 688999999999999876666554 6888876432 124667665331100 0000
Q ss_pred ----------eeccc-------------CCc-ccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHH
Q psy15183 929 ----------KTQFD-------------KNV-VTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRS 980 (1973)
Q Consensus 929 ----------~~Pi~-------------~G~-V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re 980 (1973)
.+|+. +|. +.-.+....++.++. ..|+... ..+++|.|..+....|+
T Consensus 78 ~d~~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v-----~~~VitVPa~f~d~qr~ 152 (605)
T 2kho_A 78 QDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPV-----TEAVITVPAYFNDAQRQ 152 (605)
T ss_dssp SSTTHHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCSCC-----CEEEEEECTTCCHHHHH
T ss_pred CcHHHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCC-----cEEEEEECCCCCHHHHH
Confidence 02332 232 222333444455443 3455433 46899999999999998
Q ss_pred HHHHHHHHhcCCCeEeechhhHHhhhhcCCC----CceEEEEeeCCCceEEEEee------cCEE-ccCCcEEeeccHHH
Q psy15183 981 LMSELLFECYQVPSVCYGIDSLFSYQYNGWE----GQSGVIISCGYQCTHVIPVI------NGCI-DASKAKRIDLGGFS 1049 (1973)
Q Consensus 981 ~l~ElLFE~~~vpav~~~~~sllS~ya~G~g----~~tgLVVDiG~s~T~V~PV~------dG~v-l~~si~rl~vGG~~ 1049 (1973)
.+.+. .+..|+..+.+..++.+|++++|.. ..+.+|+|+|+++|.|+.+. +|.. +.......++||.+
T Consensus 153 a~~~A-~~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d 231 (605)
T 2kho_A 153 ATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGED 231 (605)
T ss_dssp HHHHH-HHTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGG
T ss_pred HHHHH-HHHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHH
Confidence 88776 4778999999999999999888751 34689999999999998886 3533 22223346899999
Q ss_pred HHHHHHHHHhhh
Q psy15183 1050 VIHHLHKLLQLK 1061 (1973)
Q Consensus 1050 lt~~L~~lL~~k 1061 (1973)
++..|.+.|..+
T Consensus 232 ~D~~l~~~l~~~ 243 (605)
T 2kho_A 232 FDSRLINYLVEE 243 (605)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877543
No 39
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=98.99 E-value=3.1e-10 Score=111.42 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHh
Q psy15183 536 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 610 (1973)
Q Consensus 536 ~~ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~ 610 (1973)
+.++++|++|+.||+++|++.|+||++||+|..|.+||+.+|+|.++|..+.+..+.-+++|++.|+++|+.+.+
T Consensus 10 ~~~~~l~~~L~~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~ 84 (89)
T 1wud_A 10 NYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD 84 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999888888999999999999998864
No 40
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=98.95 E-value=5.3e-09 Score=129.83 Aligned_cols=115 Identities=10% Similarity=0.030 Sum_probs=84.4
Q ss_pred HHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC-----
Q psy15183 941 DIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE----- 1011 (1973)
Q Consensus 941 d~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g----- 1011 (1973)
+....+++++. ..++... ..++++.|..+....|+.+.+.+ +..|+..+.+..++.+|+++++..
T Consensus 129 ev~~~~L~~l~~~a~~~~~~~~-----~~~vitvPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~ 202 (409)
T 4gni_A 129 EIATRYLRRLVGAASEYLGKKV-----TSAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDARPEATI 202 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCC-----CEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHhCCCC-----CeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHHhcccccCC
Confidence 44455555554 3455433 47999999999999998877664 778999999999999999988761
Q ss_pred -CceEEEEeeCCCceEEEEe--ecCEEccCC-cEEeeccHHHHHHHHHHHHhhh
Q psy15183 1012 -GQSGVIISCGYQCTHVIPV--INGCIDASK-AKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 1012 -~~tgLVVDiG~s~T~V~PV--~dG~vl~~s-i~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
+.+.+|||+|+++|.++-+ .+|..-.-+ ..-.++||.+++..|.+.|..+
T Consensus 203 ~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~ 256 (409)
T 4gni_A 203 SDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKE 256 (409)
T ss_dssp CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 3469999999999998775 344322112 2347899999999998887543
No 41
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.95 E-value=1.1e-09 Score=139.92 Aligned_cols=130 Identities=8% Similarity=-0.043 Sum_probs=108.6
Q ss_pred ceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHHHHHhcCCcccccc
Q psy15183 1786 QEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMF 1865 (1973)
Q Consensus 1786 ~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~nlf 1865 (1973)
+.+++|+|..+.+.+.+.+|++|++..+..|+++ ..+..|.++|+| +.||+||+|+|+. .+|+.+..+|
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~-----~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~~f 79 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP-----EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPPGD 79 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS-----SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCBCC
T ss_pred CceEEEEEecCCccCcccEEEEEEEcCCEEEEeh-----hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCCcce
Confidence 3489999999888899999999999887777654 356788999998 8899999999999 4788877789
Q ss_pred hHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcHHHH
Q psy15183 1866 DTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL-SAAAHGKQNLV 1944 (1973)
Q Consensus 1866 DT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL-~e~~~g~~~Ll 1944 (1973)
||++|+|+|+..+++|+.|+++|++. |.. +|..||.+++.||+.|.++| .+. ++..+|
T Consensus 80 DT~laAyLL~p~~~~L~~La~~yl~~----------~gk---------~a~~DA~~t~~L~~~L~~~L~~~~--~~~~~~ 138 (540)
T 4dfk_A 80 DPMLLAYLLDPSNTTPEGVARRYGGE----------WTE---------EAGERAALSERLFANLWGRLEGEE--RLLWLY 138 (540)
T ss_dssp CHHHHHHHHCTTCCCHHHHHHHHTSC----------CCS---------CHHHHHHHHHHHHHHHHHHTTTCH--HHHHHH
T ss_pred eHHHHHHHhCCCCCCHHHHHHHHhhh----------hcc---------chHHHHHHHHHHHHHHHHHHHhhh--hhHHHH
Confidence 99999999986588999999999985 221 36789999999999999999 544 556666
Q ss_pred HHH
Q psy15183 1945 LST 1947 (1973)
Q Consensus 1945 ~~V 1947 (1973)
.++
T Consensus 139 ~~i 141 (540)
T 4dfk_A 139 REV 141 (540)
T ss_dssp HHT
T ss_pred HHH
Confidence 553
No 42
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=98.90 E-value=2.2e-09 Score=102.53 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHH
Q psy15183 538 QKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKA 608 (1973)
Q Consensus 538 ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a 608 (1973)
..+++++|++||+++|++.|.||++|++|..|.+||+..|+|.++|..+.+..+..+++|+++|+++|+++
T Consensus 4 d~~l~~~L~~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~ 74 (77)
T 2rhf_A 4 NADLSEALRELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTV 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999998999999999999999876
No 43
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=98.90 E-value=3.1e-08 Score=130.30 Aligned_cols=177 Identities=12% Similarity=0.072 Sum_probs=119.0
Q ss_pred eEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceecccccccccc-----------------
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAV----------------- 924 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~----------------- 924 (1973)
+|=||+||.++.+++.....|..+ +||+|+.... ..++|+.|......
T Consensus 4 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~-------~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~ 76 (675)
T 3d2f_A 4 PFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-------NRYLGETGKNKQTSNIKNTVANLKRIIGLDY 76 (675)
T ss_dssp CEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS-------SEEETHHHHHHHTTCGGGEECCHHHHTTCBT
T ss_pred EEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC-------cEEecHHHHHhhhhChHhHHHHHHHHhCCCC
Confidence 688999999999999865555433 4777776432 23677776321000
Q ss_pred ------------ccEEeecccCCcc-------------cCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCc
Q psy15183 925 ------------RFQLKTQFDKNVV-------------THYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNP 975 (1973)
Q Consensus 925 ------------~~~l~~Pi~~G~V-------------~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p 975 (1973)
.+.+ .+..+|.+ .-.+....++.++. ..|+... ..++||.|..++
T Consensus 77 ~d~~v~~~~~~~p~~v-~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v-----~~~VITVPa~f~ 150 (675)
T 3d2f_A 77 HHPDFEQESKHFTSKL-VELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANI-----TDVCIAVPPWYT 150 (675)
T ss_dssp TCTTHHHHHTTCCSEE-EECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCC-----CEEEEEECTTCC
T ss_pred CcHHHHHHHhhCCeeE-EEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEECCCCC
Confidence 0011 11123321 11334444454443 2455332 479999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEeechhhHHhhhhcCC----------CCceEEEEeeCCCceEEEEee--cCEE-ccCCcEE
Q psy15183 976 NYSRSLMSELLFECYQVPSVCYGIDSLFSYQYNGW----------EGQSGVIISCGYQCTHVIPVI--NGCI-DASKAKR 1042 (1973)
Q Consensus 976 ~~~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~----------g~~tgLVVDiG~s~T~V~PV~--dG~v-l~~si~r 1042 (1973)
...|+.+.+. .+..|++.+.+..++.+|++++|. ...+.+|+|+|+++|.|+-+. +|.+ +.....-
T Consensus 151 ~~qR~a~~~A-a~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd 229 (675)
T 3d2f_A 151 EEQRYNIADA-ARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACD 229 (675)
T ss_dssp HHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHH-HHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCC
Confidence 9999988875 488899999999999998877642 135789999999999998875 6754 3333345
Q ss_pred eeccHHHHHHHHHHHHhh
Q psy15183 1043 IDLGGFSVIHHLHKLLQL 1060 (1973)
Q Consensus 1043 l~vGG~~lt~~L~~lL~~ 1060 (1973)
.++||.+++..|.+.|..
T Consensus 230 ~~lGG~d~D~~l~~~l~~ 247 (675)
T 3d2f_A 230 KHFGGRDFDLAITEHFAD 247 (675)
T ss_dssp TTCSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 789999999999988753
No 44
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=98.86 E-value=3.9e-08 Score=120.58 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCCeEeechhhHHhhhhcCC----C-CceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHH
Q psy15183 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGW----E-GQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHL 1054 (1973)
Q Consensus 980 e~l~ElLFE~~~vpav~~~~~sllS~ya~G~----g-~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L 1054 (1973)
+.+.+ +++..|+.-+.+..++++++++++. . ....+|||+|+++|.|+.+.+|.++. ...+++||.++++.+
T Consensus 154 ~~~~~-~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~~i~~~i 230 (377)
T 2ych_A 154 AGVLE-ALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGKDFTEAI 230 (377)
T ss_dssp HHHHH-HHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHHHH
T ss_pred HHHHH-HHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeechHHHHHHHH
Confidence 44433 4588999999999999998887642 0 24569999999999999999999874 567899999999998
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHheecc
Q psy15183 1055 HKLLQLKYPSHINSITPSRSEELLWDYGFVA 1085 (1973)
Q Consensus 1055 ~~lL~~k~~~~~~~~~~~~~e~iKe~~c~va 1085 (1973)
.+.+ .++...+|.+|+.+|++.
T Consensus 231 ~~~~---------~~~~~~aE~~K~~~~~~~ 252 (377)
T 2ych_A 231 ARSF---------NLDLLAAEEVKRTYGMAT 252 (377)
T ss_dssp HHHT---------TCCHHHHHHHHHHTC---
T ss_pred HHHh---------CCCHHHHHHHHhhccccc
Confidence 8732 245667888888877653
No 45
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=98.77 E-value=1.4e-08 Score=98.84 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHh
Q psy15183 537 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 610 (1973)
Q Consensus 537 ~ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~ 610 (1973)
....+|++|.+||+++|++.|.|+++|++|..|.+||+..|+|.++|..+.|..+.-+++||..|+++|..+.+
T Consensus 5 ~~~~l~~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~~ 78 (85)
T 2kv2_A 5 MVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSE 78 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 45679999999999999999999999999999999999999999999999998889999999999999998743
No 46
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=98.76 E-value=1.3e-08 Score=102.18 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHh
Q psy15183 536 NQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 610 (1973)
Q Consensus 536 ~~ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~ 610 (1973)
....++|++|.+||+++|++.|.|+++|++|..|.+||+.+|+|.++|..+.+..+..+++||++|+++|.++.+
T Consensus 19 e~~~~l~~~L~~wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~~ 93 (101)
T 2rrd_A 19 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSE 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCh
Confidence 347889999999999999999999999999999999999999999999999999999999999999999998743
No 47
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=98.65 E-value=4.9e-07 Score=117.85 Aligned_cols=181 Identities=14% Similarity=0.060 Sum_probs=118.9
Q ss_pred ceEEEEcCcceEEEEEeCCCCccEE--------EecceeeccCCCCCccccceeccccccccccc--cE---Ee------
Q psy15183 869 LPIVFDNGAWCCRVGWASCEKPNLI--------FKNLIAKPRKERGKKDGETQVGNDISNIEAVR--FQ---LK------ 929 (1973)
Q Consensus 869 ~~IVID~GS~~iKaG~Age~~P~~i--------~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~--~~---l~------ 929 (1973)
.+|=||+||.++.+++.....|..+ +||+|+..... ..++|+.+....... .. ++
T Consensus 3 ~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~------~~~vG~~A~~~~~~~p~~ti~~~KrllG~~ 76 (605)
T 4b9q_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDG------CTLVGQPAKRQAVTNPQNTLFAIKRLIGRR 76 (605)
T ss_dssp CEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTS------CEEESHHHHHTTTTCGGGEECCGGGTTTCB
T ss_pred cEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCC------cEEecHHHHHHHHhCCCcEehhhHHhhCCC
Confidence 3688999999999999865555432 47777765321 246676653321100 00 00
Q ss_pred ------------ecc--------------cCCcccCHHHHHHHHHHHH----hhcCcCCCCCCCCcEEEEeCCCCcHHHH
Q psy15183 930 ------------TQF--------------DKNVVTHYDIQEQIFDYAF----SHLSINTEGNVNHPIVLTEPFLNPNYSR 979 (1973)
Q Consensus 930 ------------~Pi--------------~~G~V~dwd~le~i~~~if----~~L~i~~~~~~~~pVlltEp~~~p~~~R 979 (1973)
+|+ ....+.-.+....++.++. ..|+... ..++||.|..+....|
T Consensus 77 ~~d~~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v-----~~~VITVPa~f~~~qr 151 (605)
T 4b9q_A 77 FQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPV-----TEAVITVPAYFNDAQR 151 (605)
T ss_dssp TTSHHHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTSCC-----CEEEEEECTTCCHHHH
T ss_pred CCCHHHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEEECCCCCHHHH
Confidence 111 1112222344455555554 3566543 4789999999999999
Q ss_pred HHHHHHHHHhcCCCeEeechhhHHhhhhcCCC----CceEEEEeeCCCceEEEEeecCE------E-ccCCcEEeeccHH
Q psy15183 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGWE----GQSGVIISCGYQCTHVIPVINGC------I-DASKAKRIDLGGF 1048 (1973)
Q Consensus 980 e~l~ElLFE~~~vpav~~~~~sllS~ya~G~g----~~tgLVVDiG~s~T~V~PV~dG~------v-l~~si~rl~vGG~ 1048 (1973)
+.+-+. .+..|++.+.+..++.+|++++|.. ..+-+|+|+|++++.|+-+.-+. . +.....-.++||.
T Consensus 152 ~a~~~A-a~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~ 230 (605)
T 4b9q_A 152 QATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (605)
T ss_dssp HHHHHH-HHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHH
T ss_pred HHHHHH-HHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChH
Confidence 877665 5778999999999999999888651 35779999999999998775432 1 1112223578999
Q ss_pred HHHHHHHHHHhhh
Q psy15183 1049 SVIHHLHKLLQLK 1061 (1973)
Q Consensus 1049 ~lt~~L~~lL~~k 1061 (1973)
+++..|.+.|..+
T Consensus 231 d~D~~l~~~l~~~ 243 (605)
T 4b9q_A 231 DFDSRLINYLVEE 243 (605)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887543
No 48
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.64 E-value=1.3e-07 Score=115.08 Aligned_cols=178 Identities=16% Similarity=0.099 Sum_probs=130.7
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC-------------C----ccccceeccccccccccccEEeecc
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG-------------K----KDGETQVGNDISNIEAVRFQLKTQF 932 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~-------------~----~~~~~~vGdea~~~~~~~~~l~~Pi 932 (1973)
.|-||+|+.++|+-+ ++. -...|||+|+....... . .+..+.||+++. +|+
T Consensus 23 ~igiDlG~~~tkv~~-~~g-~~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG~~A~----------~~l 90 (346)
T 2fsj_A 23 VVGLDVGYGDTKVIG-VDG-KRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIR----------VPQ 90 (346)
T ss_dssp EEEEEECSSEEEEEC-GGG-CEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSCCB----------CCS
T ss_pred EEEEecCCcceeEEe-cCC-CEEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEcccee----------ccc
Confidence 589999999999865 433 35689999998754310 0 123456776654 789
Q ss_pred cCCcccCHHHHHHHHHHHHhhcCcCCCCCCCCcEE--EEeCCCCcHHHHHHHHHHHHHh-------------cCCCeEee
Q psy15183 933 DKNVVTHYDIQEQIFDYAFSHLSINTEGNVNHPIV--LTEPFLNPNYSRSLMSELLFEC-------------YQVPSVCY 997 (1973)
Q Consensus 933 ~~G~V~dwd~le~i~~~if~~L~i~~~~~~~~pVl--ltEp~~~p~~~Re~l~ElLFE~-------------~~vpav~~ 997 (1973)
..|.+.+ +..+.++.+.+.+...... .....++ ++.|.......|+.+-+.+... +++..+.+
T Consensus 91 ~~~~~~~-~~~~~ll~~~l~~~~~~~~-~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~l 168 (346)
T 2fsj_A 91 GDGRLAS-KEAFPLIAAALWESGIHND-GSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIM 168 (346)
T ss_dssp STTCTTS-TTTHHHHHHHHHHHCCCC----CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEE
T ss_pred CCCcccC-hhHHHHHHHHHHHhhhccC-CCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEE
Confidence 9999999 8888888888865431110 1134588 9999988888898888875442 23567889
Q ss_pred chhhHHhhhhc--CC--C--CceEEEEeeCCCceEEEEee--cCEEccCCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 998 GIDSLFSYQYN--GW--E--GQSGVIISCGYQCTHVIPVI--NGCIDASKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 998 ~~~sllS~ya~--G~--g--~~tgLVVDiG~s~T~V~PV~--dG~vl~~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
.+++.+|+++. +. . ..+.+|||+|+++|.|+-+. +|.++......+++||.++++.+.+.++.+
T Consensus 169 i~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 169 RPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp EETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred EccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHHHHHH
Confidence 99999999874 21 0 13459999999999999998 888777667888999999999988777655
No 49
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=98.62 E-value=5.5e-08 Score=99.34 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHhcC
Q psy15183 537 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQS 612 (1973)
Q Consensus 537 ~ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~~~ 612 (1973)
...++|++|.+||.++|++.|.|+++|++|..|.+||+.+|+|.++|..+.|..+.-+++| ++|+++|.++.+..
T Consensus 20 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~~ 94 (113)
T 2dgz_A 20 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFCQTN 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHHhc
Confidence 3567999999999999999999999999999999999999999999999999999999999 99999999886543
No 50
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=98.62 E-value=5.5e-08 Score=97.86 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHhHHHHHHHHHHHHh
Q psy15183 537 QQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARL 610 (1973)
Q Consensus 537 ~ql~~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~~~~i~~iI~~a~~ 610 (1973)
...++|++|.+||.++|++.|.|+++|++|..|.+||+.+|+|.++|..+.|..+..+++| ++|+++|.++.+
T Consensus 13 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~ 85 (103)
T 2e1f_A 13 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFCQ 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999999999999999999 999999998754
No 51
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=98.49 E-value=1.1e-05 Score=100.53 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhcCCCeEeechhhHHhhhhcCCC---CceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHH
Q psy15183 978 SRSLMSELLFECYQVPSVCYGIDSLFSYQYNGWE---GQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHL 1054 (1973)
Q Consensus 978 ~Re~l~ElLFE~~~vpav~~~~~sllS~ya~G~g---~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L 1054 (1973)
..+.+.++ ++.-|+.-..+..++++++++.... ....+|||+|+++|.|+-+.+|.++. ...+++||+++|+-+
T Consensus 169 ~v~n~~~~-~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~--~~~i~~GG~~it~dI 245 (419)
T 4a2a_A 169 VYEMFYNF-LQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIK--ISYVPVGMKHVIKDV 245 (419)
T ss_dssp HHHHHHHH-HHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEE--EEEESCCHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEE--EEecccHHHHHHHHH
Confidence 34444444 5777888888899999999887641 23689999999999999999999885 467899999999999
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHheec
Q psy15183 1055 HKLLQLKYPSHINSITPSRSEELLWDYGFV 1084 (1973)
Q Consensus 1055 ~~lL~~k~~~~~~~~~~~~~e~iKe~~c~v 1084 (1973)
.+.|. .....+|.+|.+++..
T Consensus 246 a~~l~---------~~~~~AE~iK~~~g~a 266 (419)
T 4a2a_A 246 SAVLD---------TSFEESERLIITHGNA 266 (419)
T ss_dssp HHHHT---------CCHHHHHHHHHHHCCS
T ss_pred HHHHC---------CCHHHHHHHHHHhccC
Confidence 88763 4567899999988765
No 52
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.02 E-value=7e-06 Score=109.76 Aligned_cols=129 Identities=10% Similarity=-0.014 Sum_probs=97.3
Q ss_pred cCceeEEEeeeccCCccCCceeEEEEEeCCceEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHHHHHhcCCcccc
Q psy15183 1784 QQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG 1863 (1973)
Q Consensus 1784 ~a~~IavDlE~~~~~s~~g~v~LlQISt~~~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~~GI~l~n 1863 (1973)
..+.+++|+|+.+ ++.+.+| +++|..++..++.++ . . ..|+++|+|+.+ |+|+|+++|. .+|+.+..
T Consensus 303 ~~~~va~d~et~~--~~~~~l~-vg~a~~~g~a~yvp~-~--~-~~Lk~lLed~~i-----n~K~d~~~L~-~~Gi~~~~ 369 (832)
T 1bgx_T 303 EGAFVGFVLSRKE--PMWADLL-ALAAARGGRVHRAPE-P--Y-KALRDLKEARGL-----LAKDLSVLAL-REGLGLPP 369 (832)
T ss_dssp TTCCBEEECSSSC--TTTCCCC-EEECBSSSEEECCSC-H--H-HHHHHCSSBCBT-----THHHHHHHHH-HHTCCCCB
T ss_pred CCceEEEEEecCC--cccCcee-EEEEEcCCCEEEEEC-C--H-HHHHHHHhCCCC-----ChHHHHHHHH-HcCCccCc
Confidence 3466999999876 4456674 447765444433333 2 2 579999999987 9999999998 59999886
Q ss_pred cchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCcHH
Q psy15183 1864 MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS-AAAHGKQN 1942 (1973)
Q Consensus 1864 lfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~-e~~~g~~~ 1942 (1973)
+||||+|+|+|+..+++|+.|+++| | | +|. + . || .||.++++||..|..+|. +. ++..
T Consensus 370 ~~Dt~laayLl~p~~~~l~~l~~~~-g----k-----~~~-----~-~--ya-~da~~~~~l~~~l~~~L~~~~--~~~~ 428 (832)
T 1bgx_T 370 GDDPMLLAYLLDPSNTTPEGVARRY-G----G-----EWT-----E-E--AG-ERAALSERLFANLWGRLEGEE--RLLW 428 (832)
T ss_dssp CCCHHHHHHHHCTTCCSTTHHHHHH-S----C-----CCC-----S-S--HH-HHHHHHHHHHHHHHHHHTTCH--HHHH
T ss_pred ccCHHHHHHHcCCCCCCHHHHHHHh-C----C-----Cch-----H-H--HH-HHHHHHHHHHHHHHHHHhhhh--hhHH
Confidence 6999999999995478999999999 3 2 131 1 1 88 699999999999999998 54 4555
Q ss_pred HHHH
Q psy15183 1943 LVLS 1946 (1973)
Q Consensus 1943 Ll~~ 1946 (1973)
+|.+
T Consensus 429 l~~~ 432 (832)
T 1bgx_T 429 LYRE 432 (832)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
No 53
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.01 E-value=5.6e-06 Score=110.69 Aligned_cols=130 Identities=10% Similarity=0.015 Sum_probs=99.3
Q ss_pred cCCeEEEEeeeccCCccCCcEEEEEEEeCCc-eEEEEccCccccHHHHHHHHcCCCceeeecchhHhHHHHHHHhCCccc
Q psy15183 339 QQQEIAIDLEYHNYRSYQGYTCLMQISTRDK-DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 417 (1973)
Q Consensus 339 ~~~~IavDtE~~~~~s~~g~l~LIQIst~~~-~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi~~~ 417 (1973)
....+++|+|+.+ ++.+.+| ++++..++ .++| ++ . . ..|+++|+|+.+ |+|+|+.+| +.+|+.+.
T Consensus 303 ~~~~va~d~et~~--~~~~~l~-vg~a~~~g~a~yv-p~-~--~-~~Lk~lLed~~i-----n~K~d~~~L-~~~Gi~~~ 368 (832)
T 1bgx_T 303 EGAFVGFVLSRKE--PMWADLL-ALAAARGGRVHRA-PE-P--Y-KALRDLKEARGL-----LAKDLSVLA-LREGLGLP 368 (832)
T ss_dssp TTCCBEEECSSSC--TTTCCCC-EEECBSSSEEECC-SC-H--H-HHHHHCSSBCBT-----THHHHHHHH-HHHTCCCC
T ss_pred CCceEEEEEecCC--cccCcee-EEEEEcCCCEEEE-EC-C--H-HHHHHHHhCCCC-----ChHHHHHHH-HHcCCccC
Confidence 3466999999877 4456665 55776444 4444 33 2 2 579999999986 999999999 57999988
Q ss_pred ceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHH-HhcCCCc
Q psy15183 418 GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS-AAAHGKQ 496 (1973)
Q Consensus 418 nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~-e~g~~~~ 496 (1973)
.+||||+|+|+|+..+++|+.|+.+| | | +|. + + || .||.+++.|+..|..+|. +.+
T Consensus 369 ~~~Dt~laayLl~p~~~~l~~l~~~~-g----k-----~~~-----~-~--ya-~da~~~~~l~~~l~~~L~~~~~---- 425 (832)
T 1bgx_T 369 PGDDPMLLAYLLDPSNTTPEGVARRY-G----G-----EWT-----E-E--AG-ERAALSERLFANLWGRLEGEER---- 425 (832)
T ss_dssp BCCCHHHHHHHHCTTCCSTTHHHHHH-S----C-----CCC-----S-S--HH-HHHHHHHHHHHHHHHHHTTCHH----
T ss_pred cccCHHHHHHHcCCCCCCHHHHHHHh-C----C-----Cch-----H-H--HH-HHHHHHHHHHHHHHHHHhhhhh----
Confidence 67999999999985478999999999 3 2 241 1 2 88 799999999999999998 554
Q ss_pred chhHHHHHHHH
Q psy15183 497 NLVLSTFTNSR 507 (1973)
Q Consensus 497 ~~l~~v~~e~e 507 (1973)
+..+|.++|
T Consensus 426 --~~~l~~~iE 434 (832)
T 1bgx_T 426 --LLWLYREVE 434 (832)
T ss_dssp --HHHHHHTTH
T ss_pred --hHHHHHHHH
Confidence 556666655
No 54
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.97 E-value=2.3e-05 Score=90.12 Aligned_cols=154 Identities=17% Similarity=0.185 Sum_probs=101.3
Q ss_pred eCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEe-C---Cc--------eEEEEccC---c----------
Q psy15183 324 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST-R---DK--------DYIVDTLK---L---------- 378 (1973)
Q Consensus 324 Idt~e~L~~ll~~L~~~~~IavDtE~~~~~s~~g~l~LIQIst-~---~~--------~~lID~l~---l---------- 378 (1973)
|++.+.+..+...+.....+++|+|+.+..+....++-|.+.. . ++ ..+|.|.. +
T Consensus 21 ~~~~~~~~~l~~~l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GI 100 (235)
T 3v9w_A 21 MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGI 100 (235)
T ss_dssp --------CHHHHTTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCC
T ss_pred ccccccccCchhcccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCC
Confidence 5666777788888888889999999998876655544333321 1 11 12344411 0
Q ss_pred c------------ccHHHHHHHHcC-------CCceeeecchhHhHHHHHHH---hCCcc-----cceeehhhhhhhcCC
Q psy15183 379 R------------EDLEVLNEVLTD-------KNIVKVFHGADSDIKWLQKD---FGLYV-----VGMFDTHQACKFLPM 431 (1973)
Q Consensus 379 ~------------~~l~~L~~lL~d-------p~I~KV~H~ak~Dl~~L~r~---~Gi~~-----~nlFDT~lAA~lLg~ 431 (1973)
. ..+..|.+++.+ .....|+||+++|+.+|.+. +|+.. ...+||+.+++.+.
T Consensus 101 t~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~- 179 (235)
T 3v9w_A 101 DPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLAL- 179 (235)
T ss_dssp CTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHH-
T ss_pred CHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHh-
Confidence 0 023455556642 45778999999999998654 47742 35789999998774
Q ss_pred CCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 432 PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 432 ~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
+.++|..|+++| |+..+ .....+|..||..+..|+..|..+|.+.|.
T Consensus 180 p~~~L~~l~~~~-gi~~~--------------~~~~H~Al~DA~~ta~l~~~l~~~l~~~~~ 226 (235)
T 3v9w_A 180 GQTVLSKACQTA-GMDFD--------------STQAHSALYDTERTAVLFCEIVNRWKRLGG 226 (235)
T ss_dssp SCCSHHHHHHHH-TCCCC--------------TTTTTCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHc-CCCCC--------------CCCCcChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457999999877 44321 123467999999999999999999998874
No 55
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.92 E-value=3.3e-05 Score=88.72 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=100.0
Q ss_pred eCCHHHHHHHHHHHhcCceeEEEeeeccCCccCCceeEEEEEe-C---Cce------E--EEEcC---Cc----------
Q psy15183 1769 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQIST-R---DKD------Y--IVDTL---KL---------- 1823 (1973)
Q Consensus 1769 Idt~e~L~~ll~~L~~a~~IavDlE~~~~~s~~g~v~LlQISt-~---~~~------~--iiD~l---~l---------- 1823 (1973)
+++...+..+...+.....+++|+|+.+..+....++-+.+.. . ++. | ++.+. .+
T Consensus 21 ~~~~~~~~~l~~~l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GI 100 (235)
T 3v9w_A 21 MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGI 100 (235)
T ss_dssp --------CHHHHTTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCC
T ss_pred ccccccccCchhcccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCC
Confidence 5566667778888888889999999998876655554433332 1 221 1 13331 00
Q ss_pred ------------hhhHHHHHHHHcC-------CCceEeecchHHHHHHHHHh---cCCcc-----cccchHHHHHHHCCC
Q psy15183 1824 ------------REDLEVLNEVLTD-------KNIVKVFHGADSDIKWLQKD---FGLYV-----VGMFDTHQACKFLPM 1876 (1973)
Q Consensus 1824 ------------~~~l~~L~~lLed-------p~I~KV~Hg~K~Di~~Lqr~---~GI~l-----~nlfDT~lAayLL~~ 1876 (1973)
...+..|.+++.+ +....|+||+++|+.+|.+. +|+.. ...+||+.+++.+.
T Consensus 101 t~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~- 179 (235)
T 3v9w_A 101 DPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLAL- 179 (235)
T ss_dssp CTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHH-
T ss_pred CHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHh-
Confidence 0123445555542 56788999999999998643 47743 24789999999875
Q ss_pred CCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH
Q psy15183 1877 PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQN 1942 (1973)
Q Consensus 1877 ~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e~~~g~~~ 1942 (1973)
+.++|..|+++| |+.... ...++|..||.++..||..|..+|.+. +.++
T Consensus 180 p~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~--~~~~ 228 (235)
T 3v9w_A 180 GQTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRL--GGWP 228 (235)
T ss_dssp SCCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHT--TCSS
T ss_pred CCCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhc--CCcc
Confidence 457999999987 544321 012458999999999999999999876 5443
No 56
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=97.67 E-value=0.00027 Score=86.35 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=120.7
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCC------C------------cccc-ceeccccccccccccEEee
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERG------K------------KDGE-TQVGNDISNIEAVRFQLKT 930 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~------~------------~~~~-~~vGdea~~~~~~~~~l~~ 930 (1973)
.|=||+|-+++|+ ..++ . ..+|||.++....... . .+.. +++|+.+...... ..+
T Consensus 6 iigiD~G~~~~K~-~~~~-~-~~~fPS~v~~~~~~~~~l~~~~~~~~~~~~v~v~~~~~~~y~vG~~A~~~~~~---~~~ 79 (355)
T 3js6_A 6 VMALDFGNGFVKG-KIND-E-KFVIPSRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNT---GKD 79 (355)
T ss_dssp EEEEEECSSEEEE-EETT-E-EEEEESEEEECCSSCCSSTTTSCCCCSCEEEEETTCTTCCEEESTTHHHHCSC---CEE
T ss_pred EEEEEcCCCcEEE-ecCC-e-EEEeceeeeecccCcccccccccCCCCceEEEEecCCeEEEEEchhhhhcCcc---ccc
Confidence 5789999999995 5544 3 4789999986543210 0 1224 6788876432111 122
Q ss_pred cc-cCCcccCHHHHHHHHHHHHhhcCcC-CCCCCCCcEEEEeCCCCcHHHH-HHHHHHHHHh-----------cCCCeEe
Q psy15183 931 QF-DKNVVTHYDIQEQIFDYAFSHLSIN-TEGNVNHPIVLTEPFLNPNYSR-SLMSELLFEC-----------YQVPSVC 996 (1973)
Q Consensus 931 Pi-~~G~V~dwd~le~i~~~if~~L~i~-~~~~~~~pVlltEp~~~p~~~R-e~l~ElLFE~-----------~~vpav~ 996 (1973)
.+ ......+ +...-++-.++..+..+ +.+..+-.|++..|.-.....+ +.+.+.+... +.+..|.
T Consensus 80 ~~~~~~k~~~-~~~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~ 158 (355)
T 3js6_A 80 TASTNDRYDI-KSFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVK 158 (355)
T ss_dssp CCCSTTGGGS-HHHHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEE
T ss_pred ccccCCcccC-HHHHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEE
Confidence 22 2333333 33334444444322211 1111234677778877666665 5777776532 2236899
Q ss_pred echhhHHhhhhcCC---------CCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhh
Q psy15183 997 YGIDSLFSYQYNGW---------EGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 997 ~~~~sllS~ya~G~---------g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
+.++++.|+|+.+. .....+|||||+.+|.++.+.+|.++...+..+++||..+++-+.+.|..+
T Consensus 159 v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 159 IVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKK 232 (355)
T ss_dssp EEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC--
T ss_pred EEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHHh
Confidence 99999999998752 035779999999999999999999998888889999999999999998766
No 57
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=97.37 E-value=0.00042 Score=83.15 Aligned_cols=193 Identities=12% Similarity=0.030 Sum_probs=108.5
Q ss_pred eEEEEcCcceEEEEEeCCCCccEEE--ecceeeccCCC-C-C-------ccccceeccccccccccccEEeecccCCccc
Q psy15183 870 PIVFDNGAWCCRVGWASCEKPNLIF--KNLIAKPRKER-G-K-------KDGETQVGNDISNIEAVRFQLKTQFDKNVVT 938 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~~P~~i~--Pn~vgr~~~~~-~-~-------~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~ 938 (1973)
.|-||+|++++|+.++.++.....+ |+++....... + . .+..+.+|..+... ......+.-.
T Consensus 2 ~igiD~G~sntK~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~g~~y~vg~~a~~~-------~~t~~~~~~~ 74 (320)
T 2zgy_A 2 LVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDA-------VVTTNIAWQY 74 (320)
T ss_dssp EEEEEECSSEEEEEEECSSSCEEEEEEECCEESSCCCCSSSCCCCEEEETTEEEEECTTCBSC-------CCSCCSGGGG
T ss_pred eEEEecCCccceEEEecCCCEEEEEecCceeecccccccCCCceeEEEECCEEEEEccccccc-------ccCcCCCccc
Confidence 4789999999999995443333345 44432211100 0 0 01123444443211 1112222222
Q ss_pred CHHHHHHHHHHHHhhcCcCCCCCCCCcEEEEeCCC-CcH----HHHHHHHHHH-----------HHhcCCCeEeechhhH
Q psy15183 939 HYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFL-NPN----YSRSLMSELL-----------FECYQVPSVCYGIDSL 1002 (1973)
Q Consensus 939 dwd~le~i~~~if~~L~i~~~~~~~~pVlltEp~~-~p~----~~Re~l~ElL-----------FE~~~vpav~~~~~sl 1002 (1973)
....+-.+. +++...+.... +..+++.-|.. +.. ..++.+.+.+ .+.+++..+.+..+++
T Consensus 75 ~~~~l~~i~-~aL~~~~~~~~---~~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e~~ 150 (320)
T 2zgy_A 75 SDVNVVAVH-HALLTSGLPVS---EVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESI 150 (320)
T ss_dssp SHHHHHHHH-HHHHHHSCCSC---EEEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSH
T ss_pred hHHHHHHHH-HHHHHcCCCCc---eEEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecCcH
Confidence 333333333 44444444332 34588888854 211 1112222221 1344567888899999
Q ss_pred HhhhhcCC---CCceEEEEeeCCCceEEEEeecCEE-ccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHHHH
Q psy15183 1003 FSYQYNGW---EGQSGVIISCGYQCTHVIPVINGCI-DASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEEL 1077 (1973)
Q Consensus 1003 lS~ya~G~---g~~tgLVVDiG~s~T~V~PV~dG~v-l~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e~i 1077 (1973)
+++++.+. .....+|||+|+++|.++-+.+|.+ +......+++||.++++.+.+.|..+ . ..++...++.+
T Consensus 151 aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~--~--~~i~~~~ae~~ 225 (320)
T 2zgy_A 151 PAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLA--R--TKGSSYLADDI 225 (320)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCC--S--BGGGHHHHHHH
T ss_pred HHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHHc--C--CCCCHHHHHHH
Confidence 98887631 1357899999999999999999876 43345677999999999999988653 1 12334445655
No 58
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=97.32 E-value=0.00042 Score=83.67 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=116.0
Q ss_pred eEEEEcCcceEEEEEe--C---CCCccEEEecceeeccCCCC----------CccccceeccccccccccccEEeecccC
Q psy15183 870 PIVFDNGAWCCRVGWA--S---CEKPNLIFKNLIAKPRKERG----------KKDGETQVGNDISNIEAVRFQLKTQFDK 934 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~A--g---e~~P~~i~Pn~vgr~~~~~~----------~~~~~~~vGdea~~~~~~~~~l~~Pi~~ 934 (1973)
.|-||+|-+++|+-.. | +..-+..|||.++..+...- -.+..++||+.+.... .+.
T Consensus 9 iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~~~~---------~~~ 79 (329)
T 4apw_A 9 VMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDS---------SET 79 (329)
T ss_dssp EEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSSSCS---------GGG
T ss_pred EEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCccccccc---------ccC
Confidence 6789999999999763 2 12234689999987543210 1122467787653211 111
Q ss_pred CcccCHHHHHHHHHHHH-hhcCcCCCCCCCCcEEEEeCCCCcH--HHHHHHHHHHHHh-------------cCCCeEeec
Q psy15183 935 NVVTHYDIQEQIFDYAF-SHLSINTEGNVNHPIVLTEPFLNPN--YSRSLMSELLFEC-------------YQVPSVCYG 998 (1973)
Q Consensus 935 G~V~dwd~le~i~~~if-~~L~i~~~~~~~~pVlltEp~~~p~--~~Re~l~ElLFE~-------------~~vpav~~~ 998 (1973)
.. +-+...-++-.++ ..+..... ..-.|++..|.-.-. ..|+.+.+.|-.. +.+..|.+.
T Consensus 80 ~k--~~~~~~~L~l~Aia~~~~~~~~--~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~ 155 (329)
T 4apw_A 80 SK--TNLIHKLAAYTAITQVLDSNKN--NKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIK 155 (329)
T ss_dssp CC--CTTHHHHHHHHHHHTTCCSSSE--EEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEE
T ss_pred Cc--CchhHHHHHHHHHHHHhccccC--ceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEE
Confidence 11 2234455556666 33443211 133456666654332 2566777766531 224568889
Q ss_pred hhhHHhhhhcCC--CCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhh
Q psy15183 999 IDSLFSYQYNGW--EGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQL 1060 (1973)
Q Consensus 999 ~~sllS~ya~G~--g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~ 1060 (1973)
++++.++|.... ...+.+|||+|+++|.++.+.+|.++...+..+++||.++++.+.+.|+.
T Consensus 156 pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 156 AEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTD 219 (329)
T ss_dssp EHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSS
T ss_pred eccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHh
Confidence 999999987621 13577999999999999999999998877788999999999999988876
No 59
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=96.60 E-value=0.0059 Score=67.50 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=84.7
Q ss_pred hcCCeEEEEeeeccCCccCCcEEEEEEE-eCCce------EEEEccC-cc---------------------ccHHHHHHH
Q psy15183 338 KQQQEIAIDLEYHNYRSYQGYTCLMQIS-TRDKD------YIVDTLK-LR---------------------EDLEVLNEV 388 (1973)
Q Consensus 338 ~~~~~IavDtE~~~~~s~~g~l~LIQIs-t~~~~------~lID~l~-l~---------------------~~l~~L~~l 388 (1973)
.....+++|+|+.+..+..+.++-|.+. ..++. .+|.|-. +. +.+..|.++
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence 4457899999999877655554322221 12221 2444321 10 112345666
Q ss_pred HcCCCceeeecchhHhHHHHHHH---hCCcc--cceeehhhhhhhc-CCCCccHHHHHHHHcCCCCCcccccccCCCCCC
Q psy15183 389 LTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFL-PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 462 (1973)
Q Consensus 389 L~dp~I~KV~H~ak~Dl~~L~r~---~Gi~~--~nlFDT~lAA~lL-g~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPL 462 (1973)
+.+. ..|+||+.+|+.+|.+. +|+.. ..++||+..++.+ +.++++|..|++. +|+...
T Consensus 90 l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~-~gi~~~------------- 153 (186)
T 2p1j_A 90 LEDS--IIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVVEK-LGLGPF------------- 153 (186)
T ss_dssp SSSC--EEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHHHH-TTCCST-------------
T ss_pred HCCC--EEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHHHH-cCCCCC-------------
Confidence 6643 45999999999998653 46653 4578998777655 4667899999986 475432
Q ss_pred CchhHhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 463 PEPAIQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 463 s~eql~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
....|..||..+..|+..|..+..+.|
T Consensus 154 ---~~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 154 ---RHHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHTTCC----
T ss_pred ---CCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 126799999999999998876665554
No 60
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.39 E-value=0.025 Score=62.67 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=85.8
Q ss_pred CCeEEEEeeeccCCccCCcEEEEEEEe--CCc-e---EEEEccC-cc---------------------ccHHHHHHHHcC
Q psy15183 340 QQEIAIDLEYHNYRSYQGYTCLMQIST--RDK-D---YIVDTLK-LR---------------------EDLEVLNEVLTD 391 (1973)
Q Consensus 340 ~~~IavDtE~~~~~s~~g~l~LIQIst--~~~-~---~lID~l~-l~---------------------~~l~~L~~lL~d 391 (1973)
...+++|+|+.+..+... .-+++|+. .++ . .+|.|-. +. +.+..|.+++.+
T Consensus 5 ~~~vviD~ETTGl~~~~~-~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~ 83 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRE-SGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG 83 (189)
T ss_dssp -CEEEEEEEEEEETTTTE-EEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT
T ss_pred CeEEEEEeECcCcCCCCC-ceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC
Confidence 467999999998765432 22345543 222 2 2444421 10 112456677764
Q ss_pred CCceeeecchhHhHHHHHHHhCCcccceeehhhhhh-----hcC-CCCccHHHHHHHHcCCCCCcccccccCCCCCCCch
Q psy15183 392 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK-----FLP-MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 465 (1973)
Q Consensus 392 p~I~KV~H~ak~Dl~~L~r~~Gi~~~nlFDT~lAA~-----lLg-~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~e 465 (1973)
.+.|+||+.+|+.+|.+.+ ....++||+.... .+. ...++|..|+++++|+......
T Consensus 84 --~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~------------- 146 (189)
T 1wlj_A 84 --KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSL------------- 146 (189)
T ss_dssp --SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCT-------------
T ss_pred --CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCC-------------
Confidence 3569999999999994332 2235789986532 221 3568999999998897654310
Q ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 466 AIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 466 ql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
.-.-|..||..+..|+..+.+++...+.
T Consensus 147 ~~H~Al~Da~ata~l~~~l~~~~~~~~~ 174 (189)
T 1wlj_A 147 LGHSSVEDARATMELYQISQRIRARRGL 174 (189)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1234889999999999999988887653
No 61
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=96.26 E-value=0.032 Score=63.44 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=62.4
Q ss_pred CceeeecchhHhHHHHHHH---hCCc-----ccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccccCCCCCCCc
Q psy15183 393 NIVKVFHGADSDIKWLQKD---FGLY-----VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 464 (1973)
Q Consensus 393 ~I~KV~H~ak~Dl~~L~r~---~Gi~-----~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~ 464 (1973)
..+.|+||+.+|+.+|.+. +|+. ....+||+..++.+- ++++|..|+++ +|+....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~-~~~~L~~l~~~-~gi~~~~-------------- 189 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY-GQTVLAKACQA-AGMEFDN-------------- 189 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH-SCCSHHHHHHH-TTCCCCT--------------
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc-CCCCHHHHHHH-cCCCcCC--------------
Confidence 4456999999999998653 5664 135789987776542 45789999886 4765421
Q ss_pred hhHhHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy15183 465 PAIQYARTDTHYLLYVYDCMKLDLSAAAH 493 (1973)
Q Consensus 465 eql~YAa~Da~~Ll~L~d~L~~~L~e~g~ 493 (1973)
...+-|..||..+..|+..|..++.+.|.
T Consensus 190 ~~~H~Al~Da~~ta~l~~~l~~~~~~~~~ 218 (224)
T 2f96_A 190 REAHSARYDTEKTAELFCGIVNRWKEMGG 218 (224)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11244899999999999999999988764
No 62
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=96.17 E-value=0.016 Score=66.90 Aligned_cols=93 Identities=19% Similarity=0.101 Sum_probs=66.3
Q ss_pred HHHHHHHHcC--CCceeeecch-hHhHHHHHHH---hCCcc--c--ceeehhhhhhhcC----------CCCccHHHHHH
Q psy15183 382 LEVLNEVLTD--KNIVKVFHGA-DSDIKWLQKD---FGLYV--V--GMFDTHQACKFLP----------MPRQSLAYLLK 441 (1973)
Q Consensus 382 l~~L~~lL~d--p~I~KV~H~a-k~Dl~~L~r~---~Gi~~--~--nlFDT~lAA~lLg----------~~~~sLa~Lv~ 441 (1973)
+..|.+++.+ +..+-|+||+ .+|+.+|.+. +|+.. . .++||+..++.+. .++++|..|++
T Consensus 105 ~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~ 184 (242)
T 3mxm_B 105 AILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYT 184 (242)
T ss_dssp HHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHH
Confidence 3456667766 1245689997 9999998754 46653 2 4689998777431 45789999999
Q ss_pred HHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15183 442 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 490 (1973)
Q Consensus 442 ~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e 490 (1973)
+++|+..... +-|..||..+..|+..+..++.+
T Consensus 185 ~~~gi~~~~~----------------H~Al~Da~ata~l~~~~~~~~~~ 217 (242)
T 3mxm_B 185 RLYWQAPTDS----------------HTAEGDDLTLLSICQWKPQALLQ 217 (242)
T ss_dssp HHHSSCCSST----------------TSHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHhCCCCCCC----------------cChHHHHHHHHHHHHHHHHHHHH
Confidence 9989865421 33889999999998887766553
No 63
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=96.10 E-value=0.023 Score=62.78 Aligned_cols=135 Identities=15% Similarity=0.091 Sum_probs=83.6
Q ss_pred hcCceeEEEeeeccCCccCCceeEEEEE-eCCceE------EEEcCC-ch---------------------hhHHHHHHH
Q psy15183 1783 KQQQEIAIDLEYHNYRSYQGYTCLMQIS-TRDKDY------IVDTLK-LR---------------------EDLEVLNEV 1833 (1973)
Q Consensus 1783 ~~a~~IavDlE~~~~~s~~g~v~LlQIS-t~~~~~------iiD~l~-l~---------------------~~l~~L~~l 1833 (1973)
.....+++|+|+.+..+..+.++-+.+. ..++.. +|.+-. +. ..+..|..+
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence 3457899999999877655544333222 122221 222211 10 123455566
Q ss_pred HcCCCceEeecchHHHHHHHHHh---cCCcc--cccchHHHHHHHC-CCCCCcHHHHHHHHcCCCCCcccccccCCCCCC
Q psy15183 1834 LTDKNIVKVFHGADSDIKWLQKD---FGLYV--VGMFDTHQACKFL-PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL 1907 (1973)
Q Consensus 1834 Ledp~I~KV~Hg~K~Di~~Lqr~---~GI~l--~nlfDT~lAayLL-~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPL 1907 (1973)
+.+ ..-|+||+.+|+.+|.+. +|+.. ..++||+..++.+ +..+++|..|+++ +|+....
T Consensus 90 l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~-~gi~~~~------------ 154 (186)
T 2p1j_A 90 LED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVVEK-LGLGPFR------------ 154 (186)
T ss_dssp SSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHHHH-TTCCSTT------------
T ss_pred HCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHHHH-cCCCCCC------------
Confidence 654 356999999999998643 56653 2478998877665 4667899999986 4755321
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1908 PEPAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1908 s~eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
.+.|..||.++..|+..|..+..++
T Consensus 155 ----~H~Al~Da~~t~~l~~~l~~~~~~~ 179 (186)
T 2p1j_A 155 ----HHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCC---
T ss_pred ----CcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 1358899999999999887765544
No 64
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=95.85 E-value=0.031 Score=64.52 Aligned_cols=93 Identities=19% Similarity=0.101 Sum_probs=66.1
Q ss_pred HHHHHHHHcC--CCceEeecch-HHHHHHHHHh---cCCcc--c--ccchHHHHHHHCC----------CCCCcHHHHHH
Q psy15183 1827 LEVLNEVLTD--KNIVKVFHGA-DSDIKWLQKD---FGLYV--V--GMFDTHQACKFLP----------MPRQSLAYLLK 1886 (1973)
Q Consensus 1827 l~~L~~lLed--p~I~KV~Hg~-K~Di~~Lqr~---~GI~l--~--nlfDT~lAayLL~----------~~~~sLa~La~ 1886 (1973)
+..|..++.+ +..+-|+||+ .+|+.+|.+. +|+.. . ..+||+..++.+. ..+++|+.|++
T Consensus 105 ~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~ 184 (242)
T 3mxm_B 105 AILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYT 184 (242)
T ss_dssp HHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHH
Confidence 3455667765 2256699996 9999998743 57653 2 3689998777432 45779999999
Q ss_pred HHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1887 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1887 ~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
+|+|+..... +-|..||.++..|+..+..++.+
T Consensus 185 ~~~gi~~~~~----------------H~Al~Da~ata~l~~~~~~~~~~ 217 (242)
T 3mxm_B 185 RLYWQAPTDS----------------HTAEGDDLTLLSICQWKPQALLQ 217 (242)
T ss_dssp HHHSSCCSST----------------TSHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHhCCCCCCC----------------cChHHHHHHHHHHHHHHHHHHHH
Confidence 9989775321 22788999999999888776653
No 65
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=95.64 E-value=0.054 Score=59.96 Aligned_cols=134 Identities=15% Similarity=0.114 Sum_probs=82.1
Q ss_pred CceeEEEeeeccCCccCCceeEEEEEe--CCceE----EEEcCC-c---------------------hhhHHHHHHHHcC
Q psy15183 1785 QQEIAIDLEYHNYRSYQGYTCLMQIST--RDKDY----IVDTLK-L---------------------REDLEVLNEVLTD 1836 (1973)
Q Consensus 1785 a~~IavDlE~~~~~s~~g~v~LlQISt--~~~~~----iiD~l~-l---------------------~~~l~~L~~lLed 1836 (1973)
...+++|+|+.+..+... ..+++|+. .++.. +|.+-. + ...+..|..++.+
T Consensus 5 ~~~vviD~ETTGl~~~~~-~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~ 83 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRE-SGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG 83 (189)
T ss_dssp -CEEEEEEEEEEETTTTE-EEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT
T ss_pred CeEEEEEeECcCcCCCCC-ceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC
Confidence 467999999998764431 22344542 22222 233211 1 0123456667754
Q ss_pred CCceEeecchHHHHHHHHHhcCCcccccchHHHHH---H--HCC-CCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHH
Q psy15183 1837 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQAC---K--FLP-MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEP 1910 (1973)
Q Consensus 1837 p~I~KV~Hg~K~Di~~Lqr~~GI~l~nlfDT~lAa---y--LL~-~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~e 1910 (1973)
.+.|+||+.+|+.+|.+.+ .-..++||+... + .+. ...++|+.|+++|+|++.....+.
T Consensus 84 --~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~----------- 148 (189)
T 1wlj_A 84 --KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLG----------- 148 (189)
T ss_dssp --SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTC-----------
T ss_pred --CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCC-----------
Confidence 4679999999999997432 222478887642 2 222 357799999999889775432101
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1911 AIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1911 qi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
+-|..||.++..|+..+.+++...
T Consensus 149 --H~Al~Da~ata~l~~~l~~~~~~~ 172 (189)
T 1wlj_A 149 --HSSVEDARATMELYQISQRIRARR 172 (189)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --cCcHHHHHHHHHHHHHHHHHHHHh
Confidence 227889999999999999888755
No 66
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=95.62 E-value=0.081 Score=60.08 Aligned_cols=83 Identities=18% Similarity=0.136 Sum_probs=59.9
Q ss_pred CceEeecchHHHHHHHHHh---cCCcc-----cccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCH
Q psy15183 1838 NIVKVFHGADSDIKWLQKD---FGLYV-----VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPE 1909 (1973)
Q Consensus 1838 ~I~KV~Hg~K~Di~~Lqr~---~GI~l-----~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~ 1909 (1973)
..+.|+||+.+|+.+|.+. +|+.. ...+||+..++.+- +.++|..|+++| |+......
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~-~~~~L~~l~~~~-gi~~~~~~------------ 191 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY-GQTVLAKACQAA-GMEFDNRE------------ 191 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH-SCCSHHHHHHHT-TCCCCTTS------------
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc-CCCCHHHHHHHc-CCCcCCCC------------
Confidence 4567999999999998643 57641 24789998776553 456899999875 76543111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15183 1910 PAIQYARTDTHYLLYVYDCMKLDLSAA 1936 (1973)
Q Consensus 1910 eqi~YAa~DA~~LL~Lyd~L~~eL~e~ 1936 (1973)
.+-|..||.++..|+..|..++.+.
T Consensus 192 --~H~Al~Da~~ta~l~~~l~~~~~~~ 216 (224)
T 2f96_A 192 --AHSARYDTEKTAELFCGIVNRWKEM 216 (224)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHh
Confidence 0238889999999999999888754
No 67
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=95.31 E-value=0.074 Score=63.57 Aligned_cols=91 Identities=18% Similarity=0.092 Sum_probs=64.8
Q ss_pred HHHHHHHcC--CCceeeecc-hhHhHHHHHHH---hCCcc----cceeehhhhhh-hcC---------CCCccHHHHHHH
Q psy15183 383 EVLNEVLTD--KNIVKVFHG-ADSDIKWLQKD---FGLYV----VGMFDTHQACK-FLP---------MPRQSLAYLLKH 442 (1973)
Q Consensus 383 ~~L~~lL~d--p~I~KV~H~-ak~Dl~~L~r~---~Gi~~----~nlFDT~lAA~-lLg---------~~~~sLa~Lv~~ 442 (1973)
..|.+++.+ +..+-|+|| +.+|+.+|.+. +|+.. ..++||+...+ +.. ..+++|+.|+++
T Consensus 106 ~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~ 185 (314)
T 3u3y_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (314)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHH
Confidence 345667766 224569999 89999999754 46553 23679987555 221 256899999999
Q ss_pred HcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15183 443 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 489 (1973)
Q Consensus 443 ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~ 489 (1973)
|+|+..... +-|..||..+..|+..+..++.
T Consensus 186 l~gi~~~~a----------------HrAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 186 LYWQAPTDS----------------HTAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HHSSCCSCS----------------SSHHHHHHHHHHHHHSSHHHHH
T ss_pred hcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 889865321 2388999999999998876665
No 68
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=95.04 E-value=0.068 Score=61.16 Aligned_cols=92 Identities=26% Similarity=0.295 Sum_probs=64.6
Q ss_pred HHHHHHHcCC--Cceeeecch-hHhHHHHHH---HhCCcc---cceeehhhhhhhc-----------CCCCccHHHHHHH
Q psy15183 383 EVLNEVLTDK--NIVKVFHGA-DSDIKWLQK---DFGLYV---VGMFDTHQACKFL-----------PMPRQSLAYLLKH 442 (1973)
Q Consensus 383 ~~L~~lL~dp--~I~KV~H~a-k~Dl~~L~r---~~Gi~~---~nlFDT~lAA~lL-----------g~~~~sLa~Lv~~ 442 (1973)
..|..++..- ..+-|+||+ .+|+.+|.+ .+|+.. ..++||+..++.+ +..+++|..|+++
T Consensus 101 ~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 101 RTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp HHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 4566777752 145689999 999999864 356654 2478998766554 2356899999998
Q ss_pred HcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15183 443 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 490 (1973)
Q Consensus 443 ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e 490 (1973)
++|+.... .+.|..||..+..|+..|.+++.+
T Consensus 181 ~~gi~~~~----------------~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 181 YFRAEPSA----------------AHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHHH
T ss_pred HhCCCCcc----------------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 88865321 255899999999999988766653
No 69
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=94.88 E-value=0.14 Score=61.13 Aligned_cols=92 Identities=17% Similarity=0.084 Sum_probs=65.1
Q ss_pred HHHHHHHcC--CCceEeecc-hHHHHHHHHHh---cCCccc----ccchHHHHHH-HCC---------CCCCcHHHHHHH
Q psy15183 1828 EVLNEVLTD--KNIVKVFHG-ADSDIKWLQKD---FGLYVV----GMFDTHQACK-FLP---------MPRQSLAYLLKH 1887 (1973)
Q Consensus 1828 ~~L~~lLed--p~I~KV~Hg-~K~Di~~Lqr~---~GI~l~----nlfDT~lAay-LL~---------~~~~sLa~La~~ 1887 (1973)
..|.+++.+ +..+-|+|| +.+|+.+|.+. +|+... ..+||+...+ +.. ..+++|..|+++
T Consensus 106 ~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~ 185 (314)
T 3u3y_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (314)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHH
Confidence 445666765 225679999 89999998743 566542 2679988655 221 257799999999
Q ss_pred HcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1888 YCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1888 yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
|+|+..... +-|..||..+..|+..+..++..
T Consensus 186 l~gi~~~~a----------------HrAl~DA~ata~lf~~l~~~~l~ 217 (314)
T 3u3y_B 186 LYWQAPTDS----------------HTAEGHVLTLLSICQWKPQALLQ 217 (314)
T ss_dssp HHSSCCSCS----------------SSHHHHHHHHHHHHHSSHHHHHH
T ss_pred hcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 888765321 12788999999999988777643
No 70
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=94.86 E-value=0.1 Score=59.71 Aligned_cols=93 Identities=26% Similarity=0.295 Sum_probs=65.3
Q ss_pred HHHHHHHHcCC--CceEeecch-HHHHHHHHH---hcCCccc---ccchHHHHHHHCC-----------CCCCcHHHHHH
Q psy15183 1827 LEVLNEVLTDK--NIVKVFHGA-DSDIKWLQK---DFGLYVV---GMFDTHQACKFLP-----------MPRQSLAYLLK 1886 (1973)
Q Consensus 1827 l~~L~~lLedp--~I~KV~Hg~-K~Di~~Lqr---~~GI~l~---nlfDT~lAayLL~-----------~~~~sLa~La~ 1886 (1973)
...|..++..- ..+-|+||+ .+|+.+|.+ .+|+... ..+||+..++.+. ..+++|..|++
T Consensus 100 ~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~ 179 (238)
T 1y97_A 100 VRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFH 179 (238)
T ss_dssp HHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHH
Confidence 34566777752 256799999 999998864 3576653 3689987766542 35689999999
Q ss_pred HHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1887 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1887 ~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
+++|+.... .+.|..||..+..|+..+.+++.+
T Consensus 180 ~~~gi~~~~----------------~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 180 RYFRAEPSA----------------AHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHhCCCCcc----------------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 888865321 144889999999999998776643
No 71
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=93.67 E-value=0.51 Score=52.10 Aligned_cols=88 Identities=22% Similarity=0.267 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCceeeecchhHhHHHHHHH---hCCc---c---cceeehhhhhhhc-CCCCccHHHHHHHHcCCCCCccc
Q psy15183 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKD---FGLY---V---VGMFDTHQACKFL-PMPRQSLAYLLKHYCDVDSDKTF 452 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~---~Gi~---~---~nlFDT~lAA~lL-g~~~~sLa~Lv~~ylgv~ldK~~ 452 (1973)
..|..++.+. .-|+||+.+|+.+|.+. +|+. . ..++||+..++.+ ....++|..|+++ +|+.....
T Consensus 87 ~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~-~gi~~~~~- 162 (194)
T 2gui_A 87 DEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCAR-YEIDNSKR- 162 (194)
T ss_dssp HHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHH-TTCCCTTC-
T ss_pred HHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHH-cCcCCCCC-
Confidence 3566677653 35899999999998653 4665 2 3678997655543 3335799999886 47654210
Q ss_pred ccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHH
Q psy15183 453 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 487 (1973)
Q Consensus 453 q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~ 487 (1973)
..+-|..||..+..|+..|..+
T Consensus 163 -------------~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 163 -------------TLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp -------------SSCCHHHHHHHHHHHHHHHTC-
T ss_pred -------------CCCChHHHHHHHHHHHHHHHhc
Confidence 1234889999999999877543
No 72
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=93.39 E-value=0.83 Score=50.37 Aligned_cols=88 Identities=22% Similarity=0.193 Sum_probs=59.0
Q ss_pred HHHHHHHcCCCceEeecchHHHHHHHHH---hcCCc---c---cccchHHHHHHHCC-CCCCcHHHHHHHHcCCCCCccc
Q psy15183 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQK---DFGLY---V---VGMFDTHQACKFLP-MPRQSLAYLLKHYCDVDSDKTF 1897 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~K~Di~~Lqr---~~GI~---l---~nlfDT~lAayLL~-~~~~sLa~La~~yLg~~l~K~~ 1897 (1973)
..|..++.+ . .-|+||+.+|+.+|.+ .+|+. + ..++||+..++.+- ...++|..|+++ +|++.....
T Consensus 87 ~~~~~~l~~-~-~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~-~gi~~~~~~ 163 (194)
T 2gui_A 87 DEFMDYIRG-A-ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCAR-YEIDNSKRT 163 (194)
T ss_dssp HHHHHHHTT-S-EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHH-TTCCCTTCS
T ss_pred HHHHHHHCC-C-eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHH-cCcCCCCCC
Confidence 456667754 3 4589999999999864 35666 2 25789987665543 335699999986 476543210
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1898 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1898 q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
. +-|..||.++..||..|..+
T Consensus 164 -~-------------H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 164 -L-------------HGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp -S-------------CCHHHHHHHHHHHHHHHTC-
T ss_pred -C-------------CChHHHHHHHHHHHHHHHhc
Confidence 0 12788999999999887644
No 73
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=92.03 E-value=0.49 Score=59.71 Aligned_cols=95 Identities=13% Similarity=0.007 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCCeEeechhhHHhhhhcCC--C-CceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHH
Q psy15183 980 SLMSELLFECYQVPSVCYGIDSLFSYQYNGW--E-GQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHK 1056 (1973)
Q Consensus 980 e~l~ElLFE~~~vpav~~~~~sllS~ya~G~--g-~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~ 1056 (1973)
+++.+++=.+++++-=.=+.++++|.+++-. + ..-.++||+|.++|++.-+.+|..++ ...+++||.++|..+..
T Consensus 371 ~NI~~cVer~~gL~veV~g~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~--a~~ip~gG~~VT~DIA~ 448 (610)
T 2d0o_A 371 AMIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDII--ATHLAGAGDMVTMIIAR 448 (610)
T ss_dssp HHHHHHHHHHHCCEEEEEEEHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEE--EEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcceeccccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchHHHHHHHHH
Confidence 4455555555555211112677888777733 1 34678999999999999999998884 56789999999999999
Q ss_pred HHhhhCCCCCCCCCHHHHHHHHHHheecc
Q psy15183 1057 LLQLKYPSHINSITPSRSEELLWDYGFVA 1085 (1973)
Q Consensus 1057 lL~~k~~~~~~~~~~~~~e~iKe~~c~va 1085 (1973)
-|... +...+|+||. |+.+-
T Consensus 449 ~Lgt~--------d~~~AErIK~-YG~A~ 468 (610)
T 2d0o_A 449 ELGLE--------DRYLAEEIKK-YPLAK 468 (610)
T ss_dssp HHTCC--------CHHHHHHHHH-SCEEE
T ss_pred HhCCC--------CHHHHHHhcc-cCcee
Confidence 98422 3788999999 87664
No 74
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=91.65 E-value=0.65 Score=55.61 Aligned_cols=76 Identities=7% Similarity=-0.040 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHhcCCCeEeec--hhhHHhhhhc----C-CCCceEEEEeeCCCceEEEEeecCEEccCCcEEeeccH
Q psy15183 975 PNYSRSLMSELLFECYQVPSVCYG--IDSLFSYQYN----G-WEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGG 1047 (1973)
Q Consensus 975 p~~~Re~l~ElLFE~~~vpav~~~--~~sllS~ya~----G-~g~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG 1047 (1973)
...+++.+.+.+-+..|++-=.+. .++.+++.|. + . .+++|||||.++|.++-+-+|.+. ....+|+|+
T Consensus 95 ~A~N~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~--~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~ 170 (315)
T 1t6c_A 95 RAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPE--GEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGI 170 (315)
T ss_dssp TSTTHHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCC--SEEEEEEEETTEEEEEEEETTEEE--EEEEECCCH
T ss_pred cCcCHHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccC--CCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccH
Confidence 344667788888888888633332 3455555443 2 3 679999999999999999899876 467899999
Q ss_pred HHHHHHH
Q psy15183 1048 FSVIHHL 1054 (1973)
Q Consensus 1048 ~~lt~~L 1054 (1973)
-.+++.+
T Consensus 171 v~l~e~~ 177 (315)
T 1t6c_A 171 VNLTETF 177 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988765
No 75
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=91.48 E-value=0.44 Score=57.74 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhcC--CC----CceEEEEeeCCCceEEEEeec--CEEc--cCCcEEe
Q psy15183 976 NYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNG--WE----GQSGVIISCGYQCTHVIPVIN--GCID--ASKAKRI 1043 (1973)
Q Consensus 976 ~~~Re~l~ElLFE~~~vpav~~--~~~sllS~ya~G--~g----~~tgLVVDiG~s~T~V~PV~d--G~vl--~~si~rl 1043 (1973)
..++..+.+-+-+..|++-=.+ -.++.+++.|.. .+ ...++|||||.++|.++-+.+ +.+. ......+
T Consensus 101 A~N~~~fl~~v~~~tGi~ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~Sl 180 (343)
T 3cer_A 101 AENREEFEDEIERILGVRPEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSM 180 (343)
T ss_dssp CTTHHHHHHHHHHHHSSCCEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEE
T ss_pred CcCHHHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeEEE
Confidence 3456778888888888863323 245677777652 11 156999999999999998877 4331 1246789
Q ss_pred eccHHHHHHHH
Q psy15183 1044 DLGGFSVIHHL 1054 (1973)
Q Consensus 1044 ~vGG~~lt~~L 1054 (1973)
|+|+..+++.+
T Consensus 181 plG~v~lt~~~ 191 (343)
T 3cer_A 181 NIGSVRMTERH 191 (343)
T ss_dssp SCCHHHHHHHT
T ss_pred ehhHHHHHHHh
Confidence 99999998765
No 76
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=90.42 E-value=0.74 Score=58.30 Aligned_cols=76 Identities=16% Similarity=0.031 Sum_probs=61.5
Q ss_pred hhhHHhhhhcCC--C-CceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHHHHHHHhhhCCCCCCCCCHHHHH
Q psy15183 999 IDSLFSYQYNGW--E-GQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSE 1075 (1973)
Q Consensus 999 ~~sllS~ya~G~--g-~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L~~lL~~k~~~~~~~~~~~~~e 1075 (1973)
.++++|.+++-. + ..-.++||+|.++|++.-+.+|..++ ...+++||.++|..+..-|... +...+|
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~--a~~ip~gG~~VT~DIA~~Lg~~--------d~~~AE 461 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT--AVHLAGAGNMVSLLIKTELGLE--------DLSLAE 461 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE--EEEEECCHHHHHHHHHHHHTCS--------CHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchHHHHHHHHHHhCCC--------CHHHHH
Confidence 677777777733 1 34678999999999999999998884 5678999999999999998422 378899
Q ss_pred HHHHHheecc
Q psy15183 1076 ELLWDYGFVA 1085 (1973)
Q Consensus 1076 ~iKe~~c~va 1085 (1973)
.||. |+.+-
T Consensus 462 rIK~-YG~A~ 470 (607)
T 1nbw_A 462 AIKK-YPLAK 470 (607)
T ss_dssp HHHH-SCEEE
T ss_pred Hhcc-cCcee
Confidence 9999 87664
No 77
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=90.22 E-value=1.5 Score=55.41 Aligned_cols=131 Identities=11% Similarity=0.006 Sum_probs=80.3
Q ss_pred hcCCeEEEEeeeccCCccCCcEEEEEEE---eC-Cc-------eEEEEccC-c--c----------------------cc
Q psy15183 338 KQQQEIAIDLEYHNYRSYQGYTCLMQIS---TR-DK-------DYIVDTLK-L--R----------------------ED 381 (1973)
Q Consensus 338 ~~~~~IavDtE~~~~~s~~g~l~LIQIs---t~-~~-------~~lID~l~-l--~----------------------~~ 381 (1973)
.....+.+|+|+.+..+....+ +||+ +. ++ ..+|.|.. + . +.
T Consensus 7 ~~~~~vv~DlETTGl~p~~d~I--IEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~ev 84 (482)
T 2qxf_A 7 QQSTFLFHDYETFGTHPALDRP--AQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAF 84 (482)
T ss_dssp CCCEEEEEEEEESSSCTTTSCE--EEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCeE--EEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHH
Confidence 4456899999999887655544 4444 12 21 23444321 1 0 01
Q ss_pred HHHHHHHHcCCCceeeecc-hhHhHHHHHHH---hCCcc--------cceeehhhhhhhc---------------CCCCc
Q psy15183 382 LEVLNEVLTDKNIVKVFHG-ADSDIKWLQKD---FGLYV--------VGMFDTHQACKFL---------------PMPRQ 434 (1973)
Q Consensus 382 l~~L~~lL~dp~I~KV~H~-ak~Dl~~L~r~---~Gi~~--------~nlFDT~lAA~lL---------------g~~~~ 434 (1973)
+..|.+++..+..+-|+|| +.+|+.+|.+. +|+.+ ...+||+-.++.+ |.+++
T Consensus 85 l~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~ 164 (482)
T 2qxf_A 85 AARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSF 164 (482)
T ss_dssp HHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCC
T ss_pred HHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCC
Confidence 2345556764556679999 89999988643 34432 3467887655432 34468
Q ss_pred cHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHH
Q psy15183 435 SLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 487 (1973)
Q Consensus 435 sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~ 487 (1973)
+|..|++.+ |+..... +-|..||..+..|+..|..+
T Consensus 165 kL~~L~~~~-Gi~~~~a----------------HrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 165 RLEHLTKAN-GIEHSNA----------------HDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp CHHHHHHHT-TCCCC-------------------CTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHc-CCCCCCC----------------CCHHHHHHHHHHHHHHHHHh
Confidence 999998754 7653211 22678999999999887654
No 78
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=89.20 E-value=1.6 Score=51.69 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=60.5
Q ss_pred HHHHHHHcCCC-----ceeeecchhHhHH-HHHHH---hCCccc----ceeehhhhh-hhcCCCC--ccHHHHHHHHcCC
Q psy15183 383 EVLNEVLTDKN-----IVKVFHGADSDIK-WLQKD---FGLYVV----GMFDTHQAC-KFLPMPR--QSLAYLLKHYCDV 446 (1973)
Q Consensus 383 ~~L~~lL~dp~-----I~KV~H~ak~Dl~-~L~r~---~Gi~~~----nlFDT~lAA-~lLg~~~--~sLa~Lv~~ylgv 446 (1973)
..|.+++.+.. ..-|+||+.+|+. +|.+. +|+... .++||+... .+++.++ ++|..|+++ +|+
T Consensus 158 ~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi 236 (299)
T 1zbh_A 158 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGM 236 (299)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTC
T ss_pred HHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cCC
Confidence 34556676541 3568999999998 88654 566532 578987543 3445554 899999986 576
Q ss_pred CCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHH
Q psy15183 447 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 488 (1973)
Q Consensus 447 ~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L 488 (1973)
.... ..+-|..||..+..|+..|..+.
T Consensus 237 ~~~g---------------~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 237 DYDG---------------RPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCCS---------------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC---------------CCCChHHHHHHHHHHHHHHHHhC
Confidence 5321 01338899999999998876543
No 79
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=88.36 E-value=2.5 Score=50.16 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=60.1
Q ss_pred HHHHHHHcCC-----CceEeecchHHHHH-HHHHh---cCCccc----ccchHHHHHH-HCCCCC--CcHHHHHHHHcCC
Q psy15183 1828 EVLNEVLTDK-----NIVKVFHGADSDIK-WLQKD---FGLYVV----GMFDTHQACK-FLPMPR--QSLAYLLKHYCDV 1891 (1973)
Q Consensus 1828 ~~L~~lLedp-----~I~KV~Hg~K~Di~-~Lqr~---~GI~l~----nlfDT~lAay-LL~~~~--~sLa~La~~yLg~ 1891 (1973)
..|..++.+. ...-|+||+.+|+. +|.+. +|+... .++||+.... +++.++ ++|..|+++ +|+
T Consensus 158 ~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi 236 (299)
T 1zbh_A 158 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGM 236 (299)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTC
T ss_pred HHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cCC
Confidence 3455666653 14569999999998 88643 566543 4689976443 334444 799999986 465
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1892 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 1933 (1973)
Q Consensus 1892 ~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL 1933 (1973)
...... +-|..||.++..|+..|..+.
T Consensus 237 ~~~g~~---------------H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 237 DYDGRP---------------NCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCCSCT---------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCC---------------CChHHHHHHHHHHHHHHHHhC
Confidence 532111 227889999999999887654
No 80
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=88.18 E-value=3.1 Score=52.62 Aligned_cols=87 Identities=11% Similarity=-0.006 Sum_probs=56.5
Q ss_pred HHHHHHcCCCceEeecc-hHHHHHHHHHh---cCCcc--------cccchHHHHHHHC---------------CCCCCcH
Q psy15183 1829 VLNEVLTDKNIVKVFHG-ADSDIKWLQKD---FGLYV--------VGMFDTHQACKFL---------------PMPRQSL 1881 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg-~K~Di~~Lqr~---~GI~l--------~nlfDT~lAayLL---------------~~~~~sL 1881 (1973)
.+..++..+..+-|+|| +.+|..+|.+. +|+.. ...+||+-.++.+ +.++++|
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL 166 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCH
Confidence 45556764567789999 89999988643 34431 2356776554432 2346789
Q ss_pred HHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1882 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1882 a~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
..|++.| |+.... .+-|..||.++..|+..|...
T Consensus 167 ~~L~~~~-Gi~~~~----------------aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 167 EHLTKAN-GIEHSN----------------AHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHHHHT-TCCCC-------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCCCC----------------CCCHHHHHHHHHHHHHHHHHh
Confidence 9998765 655321 122667999999999888654
No 81
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=87.54 E-value=1.1 Score=42.59 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHhCCCCHHHHhhhcCCCchhHHHh
Q psy15183 541 ALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEH 597 (1973)
Q Consensus 541 ~l~~L~~WRd~~Ar~~D~s~~~Vl~d~~L~~lA~~~P~~~~~l~~~~~~~~~~vr~~ 597 (1973)
++..|=+-|-.++.+.+-|...+|||-.|.++|..+|++.+++..+.|..+..++++
T Consensus 8 ay~~Lr~~~i~~s~~~~p~~s~~m~d~~Lrk~A~~LP~~e~eF~~L~g~~~~~~~~f 64 (81)
T 1d8b_A 8 TYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRF 64 (81)
T ss_dssp HHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHG
T ss_pred HHHHHHHHHHHHhhccCCchhhhccHHHHHHHHHHCCCCHHHHHHccCCCHHHHHHH
Confidence 567777889999999999999999999999999999999999999999888777653
No 82
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=87.30 E-value=2.6 Score=53.71 Aligned_cols=159 Identities=8% Similarity=-0.010 Sum_probs=91.0
Q ss_pred CceEEEEcCcceEEEEEeCCCCccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHHHH
Q psy15183 868 SLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIF 947 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~i~ 947 (1973)
...-|||+||.++|.-.+--. +.. +..+.+.+... -.|+... ..|.+ +-+.+++.+
T Consensus 11 ~~~AaIDiGSNSirL~I~~~~-~~~--~~~l~~~k~~v-------rLg~g~~-------------~~g~L-s~eai~r~~ 66 (513)
T 1u6z_A 11 QEFAAVDLGSNSFHMVIARVV-DGA--MQIIGRLKQRV-------HLADGLG-------------PDNML-SEEAMTRGL 66 (513)
T ss_dssp -CEEEEEECSSCEEEEEEEEE-TTE--EEEEEEEEECC-------CTGGGBC-------------TTCCB-CHHHHHHHH
T ss_pred CeEEEEEeccccEEEEEEEEc-CCe--eEEEEeeEEEE-------eccCccc-------------ccCCc-CHHHHHHHH
Confidence 346799999999998777322 111 11222222111 2232211 23433 356777777
Q ss_pred HHHH--hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEeec--hhhHHhhhhcCC--C-CceEEEEee
Q psy15183 948 DYAF--SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYG--IDSLFSYQYNGW--E-GQSGVIISC 1020 (1973)
Q Consensus 948 ~~if--~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~~--~~sllS~ya~G~--g-~~tgLVVDi 1020 (1973)
+-+- ..+- ..-+ ++.-.++.-..+-...++..+.+-+-+..|++-=.+. .++-+++.|.-. + ...++||||
T Consensus 67 ~~L~~f~~~~-~~~~-v~~v~~vATsA~R~A~N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDI 144 (513)
T 1u6z_A 67 NCLSLFAERL-QGFS-PASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDI 144 (513)
T ss_dssp HHHHHHHHHT-TTCC-GGGEEEEECHHHHHCTTHHHHHHHHTTTCSSCEEECCHHHHHHHHHHHHHHHSCCCSCEEEEEE
T ss_pred HHHHHHHHHH-HhCC-CCEEEEEecHHHHcCcCHHHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhccCCCCEEEEEE
Confidence 7542 2221 1110 1122223333333344566777778788888643332 446666666521 1 136999999
Q ss_pred CCCceEEEEeecCEEccCCcEEeeccHHHHHHHH
Q psy15183 1021 GYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHL 1054 (1973)
Q Consensus 1021 G~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~L 1054 (1973)
|.++|.++-+-+|.+. ....+++|.-.+++.+
T Consensus 145 GGGStEl~~~~~~~~~--~~~Sl~lG~vrlte~f 176 (513)
T 1u6z_A 145 GGGSTELVIGENFEPI--LVESRRMGCVSFAQLY 176 (513)
T ss_dssp CSSCEEEEEEETTEEE--EEEEESCCHHHHHHHH
T ss_pred CCCcEEEEEEeCCeee--EEEEEeccHHHHHHHH
Confidence 9999999998888876 4668999999887765
No 83
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=86.56 E-value=2.1 Score=51.27 Aligned_cols=77 Identities=8% Similarity=0.084 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhcCC--C--CceEEEEeeCCCceEEEEeecCEEccCCcEEeeccHHH
Q psy15183 976 NYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNGW--E--GQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFS 1049 (1973)
Q Consensus 976 ~~~Re~l~ElLFE~~~vpav~~--~~~sllS~ya~G~--g--~~tgLVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~ 1049 (1973)
..++..+.+-+-+..|++-=.+ -.++.++++|.-. + ...++|||||.++|.++-+.+|.+. ....+|+|.-.
T Consensus 88 A~N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr 165 (315)
T 3mdq_A 88 GSNKQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEIL--WKQSFEIGGQR 165 (315)
T ss_dssp CTTHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEE--EEEEESCCHHH
T ss_pred CcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEe--eeEEEechhhH
Confidence 3455677777888889873333 2456666555421 1 2579999999999999999999876 46789999887
Q ss_pred HHHHH
Q psy15183 1050 VIHHL 1054 (1973)
Q Consensus 1050 lt~~L 1054 (1973)
+++.+
T Consensus 166 l~e~f 170 (315)
T 3mdq_A 166 LIDRF 170 (315)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 76643
No 84
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=85.80 E-value=2 Score=47.54 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=58.4
Q ss_pred HHHHHHcCCC-----ceeeecchhHhHH-HHHH---HhCCccc----ceeehhhhhh-hcCC--CCccHHHHHHHHcCCC
Q psy15183 384 VLNEVLTDKN-----IVKVFHGADSDIK-WLQK---DFGLYVV----GMFDTHQACK-FLPM--PRQSLAYLLKHYCDVD 447 (1973)
Q Consensus 384 ~L~~lL~dp~-----I~KV~H~ak~Dl~-~L~r---~~Gi~~~----nlFDT~lAA~-lLg~--~~~sLa~Lv~~ylgv~ 447 (1973)
.|.+++.+.. ..-|+||+.+|+. +|.+ .+|+... ..+||+..+. +++. ..++|..|++. +|+.
T Consensus 91 ~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~gi~ 169 (204)
T 1w0h_A 91 KVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMD 169 (204)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCC
T ss_pred HHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHH-cCCC
Confidence 4555666532 2458999999996 8864 3566532 5789976554 3443 34799999876 4765
Q ss_pred CCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHH
Q psy15183 448 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 487 (1973)
Q Consensus 448 ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~ 487 (1973)
... .-+-|..||..+..|+..|..+
T Consensus 170 ~~~---------------~~H~Al~Da~~ta~l~~~l~~~ 194 (204)
T 1w0h_A 170 YDG---------------RPHCGLDDSKNIARIAVRMLQD 194 (204)
T ss_dssp CCS---------------CTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCC---------------CccCcHHHHHHHHHHHHHHHHC
Confidence 421 0133889999999998887544
No 85
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=85.50 E-value=3.5 Score=52.54 Aligned_cols=152 Identities=12% Similarity=0.052 Sum_probs=90.7
Q ss_pred CceEEEEcCcceEEEEEeCCC--CccEEEecceeeccCCCCCccccceeccccccccccccEEeecccCCcccCHHHHHH
Q psy15183 868 SLPIVFDNGAWCCRVGWASCE--KPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQ 945 (1973)
Q Consensus 868 ~~~IVID~GS~~iKaG~Age~--~P~~i~Pn~vgr~~~~~~~~~~~~~vGdea~~~~~~~~~l~~Pi~~G~V~dwd~le~ 945 (1973)
...-|||+||.++|.-.+--. .+..++ +.+.. +-.|+... ..|.+ +-+++++
T Consensus 15 ~~~AaIDiGSNS~rL~I~~~~~~~~~~~~-----~~k~~-------vrLg~gl~-------------~~g~L-s~eai~r 68 (508)
T 3hi0_A 15 APVSVIDIGSNSVRLVVYEGLSRAPAVLF-----NEKVL-------CGLGKGLA-------------LTGRM-HEEGVTR 68 (508)
T ss_dssp CCEEEEEECSSEEEEEEESCSSSSCCEEE-----EEEEE-------CCTTTTHH-------------HHSSC-CHHHHHH
T ss_pred CeEEEEEECCccEEEEEEEEcCCCceEEE-----EEeEE-------eecccCcc-------------ccCCc-CHHHHHH
Confidence 446799999999999887432 122221 11100 01222211 12333 4466666
Q ss_pred HHHHHH------hhcCcCCCCCCCCcEEEEeCCCCcHHHHHHHHHHHHHhcCCCeEee--chhhHHhhhhcCC--CCceE
Q psy15183 946 IFDYAF------SHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCY--GIDSLFSYQYNGW--EGQSG 1015 (1973)
Q Consensus 946 i~~~if------~~L~i~~~~~~~~pVlltEp~~~p~~~Re~l~ElLFE~~~vpav~~--~~~sllS~ya~G~--g~~tg 1015 (1973)
.++-+- ...+++ .-.++.-..+-...++..+.+-+-+..|++-=.+ -.++-+++.|.-. ....+
T Consensus 69 ~~~~L~~F~~~~~~~~v~------~v~~vATsA~R~A~N~~~fl~~i~~~tG~~ievIsG~EEA~l~~~gv~~~~~~~~~ 142 (508)
T 3hi0_A 69 ALMALRRFHVLSEQAQAQ------KLYVLATAAAREAENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDG 142 (508)
T ss_dssp HHHHHHHHHHHHHHTTCS------EEEEEECTHHHHSTTHHHHHHHHHHHHTSCEEECCHHHHHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHHHHHHhCCCC------eEEEEeeHHHHcCcCHHHHHHHHHHHHCCCeEEecHHHHHHHHHHHHHhcCCCCCe
Confidence 665442 223332 1223333333344556678888888889873333 2556666666522 12578
Q ss_pred EEEeeCCCceEEEEeecCEEccCCcEEeeccHHHHHHH
Q psy15183 1016 VIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHH 1053 (1973)
Q Consensus 1016 LVVDiG~s~T~V~PV~dG~vl~~si~rl~vGG~~lt~~ 1053 (1973)
+|||||.++|.++-+-+|.+. ....+|+|.-.+++.
T Consensus 143 lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~ 178 (508)
T 3hi0_A 143 IAGDLGGGSLELIDIKDKSCG--EGITLPLGGLRLSEQ 178 (508)
T ss_dssp EEEEECSSCEEEEEEETTEEC--CCEEESCCHHHHHHH
T ss_pred EEEEeCCCceEEEEeeCCeee--eEEEecceEEehhhc
Confidence 999999999999999999886 567899999988864
No 86
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=83.89 E-value=4.1 Score=45.03 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=58.4
Q ss_pred HHHHHHcCC-----CceEeecchHHHHH-HHHH---hcCCccc----ccchHHHHHHH-CCC--CCCcHHHHHHHHcCCC
Q psy15183 1829 VLNEVLTDK-----NIVKVFHGADSDIK-WLQK---DFGLYVV----GMFDTHQACKF-LPM--PRQSLAYLLKHYCDVD 1892 (1973)
Q Consensus 1829 ~L~~lLedp-----~I~KV~Hg~K~Di~-~Lqr---~~GI~l~----nlfDT~lAayL-L~~--~~~sLa~La~~yLg~~ 1892 (1973)
.|..++.+. ...-|+||+.+|+. +|.+ .+|+... .++||+..+.. ++. ..++|..|+++| |++
T Consensus 91 ~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~-gi~ 169 (204)
T 1w0h_A 91 KVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKL-GMD 169 (204)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHT-TCC
T ss_pred HHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHHc-CCC
Confidence 455566543 23469999999996 8863 3566533 46899876543 342 347899999874 765
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1893 SDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1893 l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
..... +-|..||.++..|+..|..+
T Consensus 170 ~~~~~---------------H~Al~Da~~ta~l~~~l~~~ 194 (204)
T 1w0h_A 170 YDGRP---------------HCGLDDSKNIARIAVRMLQD 194 (204)
T ss_dssp CCSCT---------------TCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCc---------------cCcHHHHHHHHHHHHHHHHC
Confidence 43111 12788999999999888654
No 87
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=82.91 E-value=6 Score=44.67 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=53.8
Q ss_pred HHHHHHHcCCCceEeecch--------HHHHHH-HHH---hcCCccc----ccchH---HHHHHHCCCCCCcHHHHHHHH
Q psy15183 1828 EVLNEVLTDKNIVKVFHGA--------DSDIKW-LQK---DFGLYVV----GMFDT---HQACKFLPMPRQSLAYLLKHY 1888 (1973)
Q Consensus 1828 ~~L~~lLedp~I~KV~Hg~--------K~Di~~-Lqr---~~GI~l~----nlfDT---~lAayLL~~~~~sLa~La~~y 1888 (1973)
..+..++.+.- -|+||+ .+|+.+ |.+ .+|+... ..+|+ ...++-+ .+.++|..|++.
T Consensus 109 ~~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~-~p~~~L~~l~~~- 184 (224)
T 2xri_A 109 ERVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGC-WPKNGLLDMNKG- 184 (224)
T ss_dssp HHHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTS-CCTTTHHHHHHH-
T ss_pred HHHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhcc-CCCCCHHHHHHH-
Confidence 34556666543 379999 999985 632 3576643 46784 4334433 345799999984
Q ss_pred cCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1889 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 1931 (1973)
Q Consensus 1889 Lg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~ 1931 (1973)
+|++..... +-|..||..+..|+..|..
T Consensus 185 ~gi~~~~~~---------------H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 185 LSLQHIGRP---------------HSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp TTCCCCSCT---------------TCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCC---------------cChHHHHHHHHHHHHHHHH
Confidence 465432110 2278899999999988754
No 88
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=82.46 E-value=0.51 Score=54.96 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHhhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceeccccccc
Q psy15183 1377 AGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSL 1453 (1973)
Q Consensus 1377 ~gL~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilas 1453 (1973)
.++.+.|.+.+... -.+......|+|+||.|..|+++++|++.+. .++..+++|.+..-+||+++|.
T Consensus 187 a~~~~~v~~~l~~~--~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g--------~~~~~p~~p~~~~A~GAAl~A~ 253 (276)
T 4ehu_A 187 AGIHTSVAKRVSSL--VKRIGVQRNVVMVGGVARNSGIVRAMAREIN--------TEIIVPDIPQLTGALGAALYAF 253 (276)
T ss_dssp HHHHHHHHHHHHHH--HHHHCCCSSEEEESGGGGCHHHHHHHHHHHT--------SCEECCSSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHhcccCCeEEEecCccchHHHHHHHHHHHC--------CCeeeCCCcchHHHHHHHHHHH
Confidence 35666666555331 2334456789999999999999999988762 3577788999888899998874
No 89
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=81.84 E-value=3.4 Score=50.14 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=60.3
Q ss_pred HHHHHHHcCCC-----ceeeecchhHhHH-HHHHH---hCCcc----cceeehhhhhh-hcCCCC--ccHHHHHHHHcCC
Q psy15183 383 EVLNEVLTDKN-----IVKVFHGADSDIK-WLQKD---FGLYV----VGMFDTHQACK-FLPMPR--QSLAYLLKHYCDV 446 (1973)
Q Consensus 383 ~~L~~lL~dp~-----I~KV~H~ak~Dl~-~L~r~---~Gi~~----~nlFDT~lAA~-lLg~~~--~sLa~Lv~~ylgv 446 (1973)
..|..++.+.. ..-|+||+.+|+. +|.+. +|+.. ..++||+.... +++.++ ++|..|+++ +|+
T Consensus 208 ~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi 286 (349)
T 1zbu_A 208 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGM 286 (349)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TTC
T ss_pred HHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cCC
Confidence 34555676531 3568999999999 88654 56653 25789876443 345554 899999886 576
Q ss_pred CCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHH
Q psy15183 447 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 488 (1973)
Q Consensus 447 ~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L 488 (1973)
.... ..+-|..||..+..|+..|..+.
T Consensus 287 ~~~g---------------~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 287 DYDG---------------RPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCCS---------------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC---------------CCCCHHHHHHHHHHHHHHHHHhc
Confidence 5321 01338899999999998876543
No 90
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=80.95 E-value=4.6 Score=48.96 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=59.8
Q ss_pred HHHHHHHcCC-----CceEeecchHHHHH-HHHHh---cCCccc----ccchHHHHHH-HCCCCC--CcHHHHHHHHcCC
Q psy15183 1828 EVLNEVLTDK-----NIVKVFHGADSDIK-WLQKD---FGLYVV----GMFDTHQACK-FLPMPR--QSLAYLLKHYCDV 1891 (1973)
Q Consensus 1828 ~~L~~lLedp-----~I~KV~Hg~K~Di~-~Lqr~---~GI~l~----nlfDT~lAay-LL~~~~--~sLa~La~~yLg~ 1891 (1973)
..|..++.+. ..+-|+||+.+|+. +|.+. +|+... .++||+.... +++.++ ++|..|+++ +|+
T Consensus 208 ~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi 286 (349)
T 1zbu_A 208 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGM 286 (349)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TTC
T ss_pred HHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cCC
Confidence 3455566553 14569999999998 88643 566532 4679976543 334444 799999986 465
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1892 DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 1933 (1973)
Q Consensus 1892 ~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL 1933 (1973)
...... +-|..||.++..|+..|..+.
T Consensus 287 ~~~g~~---------------HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 287 DYDGRP---------------HCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCCSCT---------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCC---------------CCHHHHHHHHHHHHHHHHHhc
Confidence 542111 227889999999998886654
No 91
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=79.39 E-value=15 Score=49.07 Aligned_cols=147 Identities=14% Similarity=0.211 Sum_probs=86.5
Q ss_pred cCceeEEEeeeccCCcc-CCceeEEEEEe--CCceEEEEc--CC------ch---hhHHHHHHHHc--CCCceEeecch-
Q psy15183 1784 QQQEIAIDLEYHNYRSY-QGYTCLMQIST--RDKDYIVDT--LK------LR---EDLEVLNEVLT--DKNIVKVFHGA- 1846 (1973)
Q Consensus 1784 ~a~~IavDlE~~~~~s~-~g~v~LlQISt--~~~~~iiD~--l~------l~---~~l~~L~~lLe--dp~I~KV~Hg~- 1846 (1973)
.-..++||+|+++.... ...-.+++||. .++..++.. +. .. ..+..+..++. ||.++ ||||.
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDii-vGyN~~ 212 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDVL-ITYNGD 212 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSEE-EESSTT
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCEE-EEeCCC
Confidence 45779999999762111 11223456663 333333221 10 01 12344444443 67764 89997
Q ss_pred HHHHHHHHH---hcCCcc----------------------cc--cchHHHHHHH-CCCCCCcHHHHHHHHcCCCCCc--c
Q psy15183 1847 DSDIKWLQK---DFGLYV----------------------VG--MFDTHQACKF-LPMPRQSLAYLLKHYCDVDSDK--T 1896 (1973)
Q Consensus 1847 K~Di~~Lqr---~~GI~l----------------------~n--lfDT~lAayL-L~~~~~sLa~La~~yLg~~l~K--~ 1896 (1973)
.+|+..|.+ .+|+.+ .+ .+|++..+.- +..++++|+.+++++||..... .
T Consensus 213 ~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~ 292 (775)
T 1qht_A 213 NFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYA 292 (775)
T ss_dssp TTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHHHHHHHHCCCCCCCCH
T ss_pred CccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHHHHHHHhCCCCCccCH
Confidence 568877643 245442 12 5688876543 4567889999999999974321 1
Q ss_pred cccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1897 FQLF-DWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 1931 (1973)
Q Consensus 1897 ~q~s-dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~ 1931 (1973)
.+.. -|...+--...+.|...||..++.|+..+..
T Consensus 293 ~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 293 EEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1222 2544432266789999999999999887654
No 92
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=79.34 E-value=5.4 Score=45.09 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=54.0
Q ss_pred HHHHHHHcCCCceeeecch--------hHhHHH-HHH---HhCCccc----ceeeh---hhhhhhcCCCCccHHHHHHHH
Q psy15183 383 EVLNEVLTDKNIVKVFHGA--------DSDIKW-LQK---DFGLYVV----GMFDT---HQACKFLPMPRQSLAYLLKHY 443 (1973)
Q Consensus 383 ~~L~~lL~dp~I~KV~H~a--------k~Dl~~-L~r---~~Gi~~~----nlFDT---~lAA~lLg~~~~sLa~Lv~~y 443 (1973)
..|.+++.+..+ |+||+ .+|+.. |.+ .+|+... ..+|+ .-.++-+ .+.++|..|++ +
T Consensus 109 ~~f~~~l~~~~l--v~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~-~p~~~L~~l~~-~ 184 (224)
T 2xri_A 109 ERVDEWMAKEGL--LDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGC-WPKNGLLDMNK-G 184 (224)
T ss_dssp HHHHHHHHHTTT--TSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTS-CCTTTHHHHHH-H
T ss_pred HHHHHHHhhccc--ccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhcc-CCCCCHHHHHH-H
Confidence 345566765433 79999 999985 633 4566542 56784 3333322 44589999987 4
Q ss_pred cCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHH
Q psy15183 444 CDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 486 (1973)
Q Consensus 444 lgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~ 486 (1973)
+|+.... ...-|..||..+..|+..|..
T Consensus 185 ~gi~~~~---------------~~H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 185 LSLQHIG---------------RPHSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp TTCCCCS---------------CTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCC---------------CCcChHHHHHHHHHHHHHHHH
Confidence 5654321 113488999999999887753
No 93
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=74.86 E-value=6.2 Score=47.01 Aligned_cols=85 Identities=8% Similarity=-0.024 Sum_probs=53.6
Q ss_pred HHHHHHcCCCceeeecch------hHhH-HHHHH---HhCCccc----ceeehhhhhh-hcC---C----CCccHHHHHH
Q psy15183 384 VLNEVLTDKNIVKVFHGA------DSDI-KWLQK---DFGLYVV----GMFDTHQACK-FLP---M----PRQSLAYLLK 441 (1973)
Q Consensus 384 ~L~~lL~dp~I~KV~H~a------k~Dl-~~L~r---~~Gi~~~----nlFDT~lAA~-lLg---~----~~~sLa~Lv~ 441 (1973)
.|.+++.+..+ |+||+ .+|+ .+|.+ .+|+... ..+||+-.++ +++ . ++++|..|++
T Consensus 101 ~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~ 178 (308)
T 3cg7_A 101 QFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNE 178 (308)
T ss_dssp HHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHH
T ss_pred HHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHH
Confidence 45556665433 67777 8999 57753 4566543 4689985543 332 1 1578999996
Q ss_pred HHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHH
Q psy15183 442 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKL 486 (1973)
Q Consensus 442 ~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~ 486 (1973)
+ +|+..... .+-|..||..+..|+..|..
T Consensus 179 ~-~gi~~~~~---------------~HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 179 Y-YDLPTIGR---------------AHDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp H-TTCCCCSC---------------TTCHHHHHHHHHHHHHHHHH
T ss_pred H-cCCCCCCC---------------CcCHHHHHHHHHHHHHHHHH
Confidence 4 56654211 13388999999999887643
No 94
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=73.97 E-value=15 Score=45.03 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=44.9
Q ss_pred cchHHHHHHH--CC-CCCCcHHHHHHHHcCCCC-Cccccccc-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1864 MFDTHQACKF--LP-MPRQSLAYLLKHYCDVDS-DKTFQLFD-WRHRPLPEPAIQYARTDTHYLLYVYDCM 1929 (1973)
Q Consensus 1864 lfDT~lAayL--L~-~~~~sLa~La~~yLg~~l-~K~~q~sd-W~~RPLs~eqi~YAa~DA~~LL~Lyd~L 1929 (1973)
++|++.+.+- .. ..+++|+.+++++||... +-..+... |. .-....+.|...||..++.|+.++
T Consensus 267 ~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~--~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 267 ILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRE--TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799888776 34 668899999999998642 21122222 32 112456799999999999999984
No 95
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=73.00 E-value=29 Score=40.81 Aligned_cols=85 Identities=12% Similarity=0.075 Sum_probs=58.8
Q ss_pred cCCCceeeecchhHhHHHHHHHh-CC---------------cccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccc
Q psy15183 390 TDKNIVKVFHGADSDIKWLQKDF-GL---------------YVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 453 (1973)
Q Consensus 390 ~dp~I~KV~H~ak~Dl~~L~r~~-Gi---------------~~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q 453 (1973)
-++++.+|.|...+|+-.|.+.+ |- ....++||...+..++.-+-||.+|++. |++.-
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~-L~v~r----- 220 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQ-LELER----- 220 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHH-TTCCC-----
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHh-CCCCC-----
Confidence 35777788766668886655432 21 1246899999888886445689999886 45431
Q ss_pred cccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15183 454 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 490 (1973)
Q Consensus 454 ~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e 490 (1973)
..| .+-|+.|+..+..++-+|++.+-+
T Consensus 221 -----~g~-----~HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 221 -----IGP-----QHQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp -----CSC-----TTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCC-----CCcchhHHHHHHHHHHHHHHHHhc
Confidence 011 133999999999999999887764
No 96
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=72.47 E-value=22 Score=38.35 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=47.0
Q ss_pred HHHHHHHcCC----CceeeecchhHhHHHHHHHhCC---cc-cceeehhhhhhhcCCCCccHHHHHHHHcCCCCCccccc
Q psy15183 383 EVLNEVLTDK----NIVKVFHGADSDIKWLQKDFGL---YV-VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 454 (1973)
Q Consensus 383 ~~L~~lL~dp----~I~KV~H~ak~Dl~~L~r~~Gi---~~-~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~ 454 (1973)
..|.+++.+- ..+-|+||+.+|+.+|.+.+.. .. ...+|+. +|..|+.+++.. +.+
T Consensus 86 ~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~-----------tl~~l~~~~~p~-~~~---- 149 (180)
T 2igi_A 86 LATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVS-----------TLKELARRWKPE-ILD---- 149 (180)
T ss_dssp HHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETH-----------HHHHHHHHHCGG-GGG----
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHH-----------HHHHHHHHhChH-hhh----
Confidence 3455566641 2456999999999999754321 11 2345611 222233333210 000
Q ss_pred ccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHH
Q psy15183 455 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 488 (1973)
Q Consensus 455 sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L 488 (1973)
+ ++...-+-|..||..+..|+..++..+
T Consensus 150 -~-----i~~~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 150 -G-----FTKQGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp -G-----SCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred -C-----CCCcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 0 112223558999999999999887654
No 97
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=67.74 E-value=31 Score=46.20 Aligned_cols=145 Identities=14% Similarity=0.193 Sum_probs=84.1
Q ss_pred cCCeEEEEeeeccCCccC-CcEEEEEEEe--CCceEEEEccC--------ccc---cHHHHHHHHc--CCCceeeecch-
Q psy15183 339 QQQEIAIDLEYHNYRSYQ-GYTCLMQIST--RDKDYIVDTLK--------LRE---DLEVLNEVLT--DKNIVKVFHGA- 401 (1973)
Q Consensus 339 ~~~~IavDtE~~~~~s~~-g~l~LIQIst--~~~~~lID~l~--------l~~---~l~~L~~lL~--dp~I~KV~H~a- 401 (1973)
.-..+++|+|.++..... ..-.+++|+. .++..++-... ... .+..+..++. ||.++ |+||.
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDii-vGyN~~ 212 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDVL-ITYNGD 212 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSEE-EESSTT
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCEE-EEeCCC
Confidence 446799999998622111 1112455553 33333322111 011 2344444443 67764 89997
Q ss_pred hHhHHHHHHH---hCCcc------------------------cceeehhhhhh-hcCCCCccHHHHHHHHcCCCCCc--c
Q psy15183 402 DSDIKWLQKD---FGLYV------------------------VGMFDTHQACK-FLPMPRQSLAYLLKHYCDVDSDK--T 451 (1973)
Q Consensus 402 k~Dl~~L~r~---~Gi~~------------------------~nlFDT~lAA~-lLg~~~~sLa~Lv~~ylgv~ldK--~ 451 (1973)
.+|+..|... +|+.. ...+|++..++ .+..++++|..+++++||..... .
T Consensus 213 ~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~ 292 (775)
T 1qht_A 213 NFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYA 292 (775)
T ss_dssp TTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHHHHHHHHCCCCCCCCH
T ss_pred CccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHHHHHHHhCCCCCccCH
Confidence 5799877643 44432 12468866554 34567799999999999975321 1
Q ss_pred cccc-cCCCCCCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 452 FQLF-DWRHRPLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 452 ~q~s-DW~~RPLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
.+.. -|...+--...+.|...||..++.|+..+
T Consensus 293 ~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~ 326 (775)
T 1qht_A 293 EEIAQAWESGEGLERVARYSMEDAKVTYELGREF 326 (775)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222 25544311567799999999999998654
No 98
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=66.79 E-value=16 Score=43.36 Aligned_cols=86 Identities=8% Similarity=-0.038 Sum_probs=54.7
Q ss_pred HHHHHHcCCCceEeecch------HHHH-HHHHH---hcCCccc----ccchHHHHHHH-CC---C----CCCcHHHHHH
Q psy15183 1829 VLNEVLTDKNIVKVFHGA------DSDI-KWLQK---DFGLYVV----GMFDTHQACKF-LP---M----PRQSLAYLLK 1886 (1973)
Q Consensus 1829 ~L~~lLedp~I~KV~Hg~------K~Di-~~Lqr---~~GI~l~----nlfDT~lAayL-L~---~----~~~sLa~La~ 1886 (1973)
.|..++.+..+ |+||+ .+|+ .+|.+ .+|+... ..+||+..+.. ++ . ..++|..|++
T Consensus 101 ~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~ 178 (308)
T 3cg7_A 101 QFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNE 178 (308)
T ss_dssp HHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHH
T ss_pred HHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHH
Confidence 45556655332 67777 8998 57653 3577654 36799865543 32 1 1578999996
Q ss_pred HHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1887 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLD 1932 (1973)
Q Consensus 1887 ~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~e 1932 (1973)
+ +|+...... +-|..||.++..|+..|..+
T Consensus 179 ~-~gi~~~~~~---------------HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 179 Y-YDLPTIGRA---------------HDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp H-TTCCCCSCT---------------TCHHHHHHHHHHHHHHHHHT
T ss_pred H-cCCCCCCCC---------------cCHHHHHHHHHHHHHHHHHc
Confidence 5 465542210 12778999999999888764
No 99
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=66.14 E-value=75 Score=36.95 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=16.4
Q ss_pred eEEEEcCcceEEEEEeCCC
Q psy15183 870 PIVFDNGAWCCRVGWASCE 888 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~ 888 (1973)
-++||+|..++|.|+-.++
T Consensus 4 lL~IDIGNT~iK~gl~d~~ 22 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGD 22 (266)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4899999999999997554
No 100
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=64.62 E-value=25 Score=42.57 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=27.2
Q ss_pred ceEEEEeeCCCceEEEEeec--CEEccCCcEEeeccHH
Q psy15183 1013 QSGVIISCGYQCTHVIPVIN--GCIDASKAKRIDLGGF 1048 (1973)
Q Consensus 1013 ~tgLVVDiG~s~T~V~PV~d--G~vl~~si~rl~vGG~ 1048 (1973)
.+++|||||.++|.++-... +.+.......+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCc
Confidence 47999999999999987754 3444434578888874
No 101
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=64.01 E-value=4.3 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=23.4
Q ss_pred ceEEEEeeCCCceEEEEeecCEEcc
Q psy15183 1013 QSGVIISCGYQCTHVIPVINGCIDA 1037 (1973)
Q Consensus 1013 ~tgLVVDiG~s~T~V~PV~dG~vl~ 1037 (1973)
.+||+||||..+|.|+||.+|.++.
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~ 151 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVA 151 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECC
T ss_pred CCEEEEEcCcchhhhhhhcCCeecc
Confidence 4799999999999999999999975
No 102
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=63.88 E-value=55 Score=38.11 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=15.6
Q ss_pred EEEEcCcceEEEEEeCCC
Q psy15183 871 IVFDNGAWCCRVGWASCE 888 (1973)
Q Consensus 871 IVID~GS~~iKaG~Age~ 888 (1973)
++||+|..++|.|+-.++
T Consensus 3 L~IDIGNT~ik~gl~~~~ 20 (268)
T 2h3g_X 3 FVLDVGNTNAVLGVFEEG 20 (268)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred EEEEECcCcEEEEEEECC
Confidence 789999999999987544
No 103
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=61.11 E-value=32 Score=37.83 Aligned_cols=85 Identities=9% Similarity=0.075 Sum_probs=50.4
Q ss_pred HHHHHHcCCC----ceeeecchhHhHHHHHHHhCC---cc-cceeehhhhhhhcCCCCccHHHHHHHHcCCCCCcccccc
Q psy15183 384 VLNEVLTDKN----IVKVFHGADSDIKWLQKDFGL---YV-VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLF 455 (1973)
Q Consensus 384 ~L~~lL~dp~----I~KV~H~ak~Dl~~L~r~~Gi---~~-~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~s 455 (1973)
.|.+++.+.- ..-|+||+.+|+.+|.+.+.. .. ...+|+. +|..|+.+++.- + .
T Consensus 91 ~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~-----------~l~~l~~~~~p~-~------~ 152 (194)
T 2gbz_A 91 QTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS-----------TIKELARRWAPA-V------A 152 (194)
T ss_dssp HHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH-----------HHHHHHHHHCGG-G------G
T ss_pred HHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH-----------HHHHHHHHhCHH-H------H
Confidence 4455565532 236999999999999755421 11 1233442 455666666421 0 0
Q ss_pred cCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHHH
Q psy15183 456 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 490 (1973)
Q Consensus 456 DW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~e 490 (1973)
. -++...-+-|..||..+..++..++.++..
T Consensus 153 ~----~i~~~~~H~Al~Da~ata~ll~~~~~~~~~ 183 (194)
T 2gbz_A 153 S----GFAKSSAHTALSDVRDSIDELRHYRQFMGT 183 (194)
T ss_dssp T----TCCCCSCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred h----CCCCCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 0 022233466899999999999988776653
No 104
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=60.32 E-value=27 Score=42.83 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=62.7
Q ss_pred HHHHHHH--cCCCceeeecch-hHhHHHHHHH----hCC---------c------------------c-c-ceeehhhhh
Q psy15183 383 EVLNEVL--TDKNIVKVFHGA-DSDIKWLQKD----FGL---------Y------------------V-V-GMFDTHQAC 426 (1973)
Q Consensus 383 ~~L~~lL--~dp~I~KV~H~a-k~Dl~~L~r~----~Gi---------~------------------~-~-nlFDT~lAA 426 (1973)
..+..++ .||.|+ ++||. .+|+..|.+. +|+ . + + -++|++.++
T Consensus 196 ~~f~~~i~~~dPDii-~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~~~~~ 274 (388)
T 1noy_A 196 MEYINLWEQKRPAIF-TGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLY 274 (388)
T ss_dssp HHHHHHHHHSCCSEE-ECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHHHHH
T ss_pred HHHHHHHHHhCCcEE-EecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEHHHHH
Confidence 4455555 578774 78997 5788765432 332 0 0 0 157887777
Q ss_pred hh--cC-CCCccHHHHHHHHcCCCC-Cccccccc-CCCCCCCchhHhHHHHhHHHHHHHHHHH
Q psy15183 427 KF--LP-MPRQSLAYLLKHYCDVDS-DKTFQLFD-WRHRPLPEPAIQYARTDTHYLLYVYDCM 484 (1973)
Q Consensus 427 ~l--Lg-~~~~sLa~Lv~~ylgv~l-dK~~q~sD-W~~RPLs~eql~YAa~Da~~Ll~L~d~L 484 (1973)
+- .. .++++|..+++++||..- +-..+... |.. -....+.|...||...+.|+.++
T Consensus 275 k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~~--~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 275 KKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRET--NHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp HHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 34 667999999999998642 21122222 321 12456699999999999998874
No 105
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=59.30 E-value=91 Score=33.42 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=44.9
Q ss_pred HHHHHHHcCC----CceEeecchHHHHHHHHHhcC---Cccc-ccch--HHHHHHHCCCCCCcHHHHHHHHcCCCCCccc
Q psy15183 1828 EVLNEVLTDK----NIVKVFHGADSDIKWLQKDFG---LYVV-GMFD--THQACKFLPMPRQSLAYLLKHYCDVDSDKTF 1897 (1973)
Q Consensus 1828 ~~L~~lLedp----~I~KV~Hg~K~Di~~Lqr~~G---I~l~-nlfD--T~lAayLL~~~~~sLa~La~~yLg~~l~K~~ 1897 (1973)
..|..++.+- ..+-|+||+.+|+.+|.+.+. ..+. ..+| |+ ..|+++++.. +.+
T Consensus 86 ~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl-------------~~l~~~~~p~-~~~-- 149 (180)
T 2igi_A 86 LATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTL-------------KELARRWKPE-ILD-- 149 (180)
T ss_dssp HHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHH-------------HHHHHHHCGG-GGG--
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHH-------------HHHHHHhChH-hhh--
Confidence 3455566641 346799999999999985431 1111 2345 43 2233333210 000
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1898 QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 1933 (1973)
Q Consensus 1898 q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL 1933 (1973)
.. +....+-|-.||.++..|+..+++.+
T Consensus 150 ~i--------~~~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 150 GF--------TKQGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp GS--------CCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CC--------CCcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 00 00011237889999999999887764
No 106
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=59.01 E-value=6.6 Score=53.08 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=64.8
Q ss_pred ceEeecchHHHHHHHHHhcCCcccc--cchHHHHHHHC------------------------------------------
Q psy15183 1839 IVKVFHGADSDIKWLQKDFGLYVVG--MFDTHQACKFL------------------------------------------ 1874 (1973)
Q Consensus 1839 I~KV~Hg~K~Di~~Lqr~~GI~l~n--lfDT~lAayLL------------------------------------------ 1874 (1973)
-+.||||..+|...+...|.+.-.+ ++|||-.+-..
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 4559999999998776677776553 56887652211
Q ss_pred -----CC-CCC--cHHHHHHHHcCC-CCCcccccccCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1875 -----PM-PRQ--SLAYLLKHYCDV-DSDKTFQLFDWRHRPLP------EPAIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1875 -----~~-~~~--sLa~La~~yLg~-~l~K~~q~sdW~~RPLs------~eqi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
+. +-. ||+++++.|||. .++|.... .+....+. ++.+.|.|.|+.++..+|..+.....+
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~Rd-~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~e 349 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRE-LFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLE 349 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSS-STTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccChhhHh-hhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11 124 799999999997 77775432 12222222 445699999999999999999987654
No 107
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=58.58 E-value=5 Score=47.33 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHhcCCH-HHHHHhhcCEEEECC-CCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceecccccc
Q psy15183 1377 AGISETLNFVLNSYPQ-HIAQSLANNIFVTGS-LCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 1452 (1973)
Q Consensus 1377 ~gL~e~I~~sI~~~~~-d~r~~L~~NIvLTGG-~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSila 1452 (1973)
+||..+|.+.|..+.. -.++.=..+|+++|| .+..|++.++|.+.+... ..++..+++++|..-+||.+++
T Consensus 214 asl~~sV~~~I~~la~~~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 214 AAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchhcCHHHHHHHHHHHhhC-----CceEEECCCccHHHHHHHHHhC
Confidence 4666666655533311 112233457999999 999999999999876442 4678889999999999998765
No 108
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=56.48 E-value=1.2e+02 Score=35.56 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=57.3
Q ss_pred cCCCceEeecchHHHHHHHHHhc-CCcc---------------cccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccc
Q psy15183 1835 TDKNIVKVFHGADSDIKWLQKDF-GLYV---------------VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQ 1898 (1973)
Q Consensus 1835 edp~I~KV~Hg~K~Di~~Lqr~~-GI~l---------------~nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q 1898 (1973)
-++++..|.|...+|+..|-+.+ |-.+ ..++||...+...+.-+-||.+|++.+ ++..
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~L-~v~r----- 220 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQL-ELER----- 220 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHHT-TCCC-----
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHhC-CCCC-----
Confidence 35778888777668886654322 2211 357799988887764455899998874 5332
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1899 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1899 ~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
..| . +-|..|+..+..+|-+|++.+-+
T Consensus 221 -----~g~--~---HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 221 -----IGP--Q---HQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp -----CSC--T---TSHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCC--C---CcchhHHHHHHHHHHHHHHHHhc
Confidence 111 1 22889999999999999988764
No 109
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=55.69 E-value=78 Score=34.63 Aligned_cols=85 Identities=9% Similarity=0.080 Sum_probs=47.7
Q ss_pred HHHHHHcCCC----ceEeecchHHHHHHHHHhcC---Cccc-ccchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcccccc
Q psy15183 1829 VLNEVLTDKN----IVKVFHGADSDIKWLQKDFG---LYVV-GMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLF 1900 (1973)
Q Consensus 1829 ~L~~lLedp~----I~KV~Hg~K~Di~~Lqr~~G---I~l~-nlfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~~q~s 1900 (1973)
.|..++.+.- ..-|+||+.+|..+|.+.+. ..+. ..+|+. +|..|+++|+.. +-+.
T Consensus 91 ~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~-----------~l~~l~~~~~p~-~~~~---- 154 (194)
T 2gbz_A 91 QTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS-----------TIKELARRWAPA-VASG---- 154 (194)
T ss_dssp HHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH-----------HHHHHHHHHCGG-GGTT----
T ss_pred HHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH-----------HHHHHHHHhCHH-HHhC----
Confidence 3445565421 23699999999999985431 1111 123432 455666666421 0000
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1901 DWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSA 1935 (1973)
Q Consensus 1901 dW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~~eL~e 1935 (1973)
++....+-|-.||..+..++..++..+..
T Consensus 155 ------i~~~~~H~Al~Da~ata~ll~~~~~~~~~ 183 (194)
T 2gbz_A 155 ------FAKSSAHTALSDVRDSIDELRHYRQFMGT 183 (194)
T ss_dssp ------CCCCSCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred ------CCCCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 00001133888999999999998876643
No 110
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=49.22 E-value=2.7 Score=50.41 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=34.7
Q ss_pred hhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceeccccccc
Q psy15183 1398 LANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSL 1453 (1973)
Q Consensus 1398 L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilas 1453 (1973)
+...|+||||+|.+ +.+.|++++ + +.+..+++|.++.-+|.-.++.
T Consensus 278 ~~~~IvltGGGA~l--~~~~l~~~~----~----~~v~v~~~P~~a~a~G~~~~~~ 323 (329)
T 4apw_A 278 QLDSLIFIGGTTQK--LKEQISKTY----P----NNSIITNNSQWTTCEGLYKVAV 323 (329)
T ss_dssp SCSEEEEESTTHHH--HHHHHHHHS----T----TCEECCSSGGGHHHHHHHHHHH
T ss_pred HccEEEEECChHHH--HHHHHHHHc----C----CCCEecCCChhhHHHHHHHHHh
Confidence 46889999999999 446666654 2 2466788999999999876653
No 111
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=45.99 E-value=4.7 Score=47.89 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=33.0
Q ss_pred hcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceecccccc
Q psy15183 1399 ANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 1452 (1973)
Q Consensus 1399 ~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSila 1452 (1973)
...|+||||+|.+ +.+.|.+ .++.. .-++..+.+|.++.-+|+.+++
T Consensus 273 ~~~vvl~GGga~l--l~~~l~~----~~~~~-~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 273 YTHVMVIGGGAEL--ICDAVKK----HTQIR-DERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp CCEEEEESTTHHH--HHHHHHH----TSCCC-GGGEECCSCGGGHHHHHHHHHH
T ss_pred CCeEEEECChHHH--HHHHHHH----HhCCC-CCceeeCCCcHHHHHHHHHHhc
Confidence 4679999999987 5555554 33311 1146678899999999988764
No 112
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=45.02 E-value=1.5e+02 Score=38.16 Aligned_cols=134 Identities=9% Similarity=0.044 Sum_probs=73.0
Q ss_pred CCeEEEEeeeccCCccCCcEEEEEEEeCCc--eEEEEccCccccHHHHHHHHcCCCceeeecchhHhHHHHHHHh---C-
Q psy15183 340 QQEIAIDLEYHNYRSYQGYTCLMQISTRDK--DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDF---G- 413 (1973)
Q Consensus 340 ~~~IavDtE~~~~~s~~g~l~LIQIst~~~--~~lID~l~l~~~l~~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~---G- 413 (1973)
...+++|+|... +...+.+..+.+.+.+. .|..+ ..+..+.+++.+.++.-++||.++|...|.+.+ |
T Consensus 6 ~~i~~~D~Et~~-d~~~~~~~~i~~~~~~~~~~~~~~-----~~l~~fi~~~~~~~~~i~~hNl~FD~~~l~~~~~~~~~ 79 (575)
T 2py5_A 6 RKMYSCAFETTT-KVEDCRVWAYGYMNIEDHSEYKIG-----NSLDEFMAWVLKVQADLYFHNLKFAGAFIINWLERNGF 79 (575)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEEESSCTTCEEEE-----SCHHHHHHHHHHHCCEEEETTHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEEeec-CCCCCceEEEEEEeCCceEEEEec-----hhHHHHHHHHHHcCCEEEEEChhhhHHHHHHHHHHhCc
Confidence 357899999843 23334455555554422 33332 234444445544445568899999998886542 2
Q ss_pred ------C--c----c-cc--e--eehhh--------hhhhcC---CCCccHHHHHHHHcCCCCCccc---cc---ccCCC
Q psy15183 414 ------L--Y----V-VG--M--FDTHQ--------ACKFLP---MPRQSLAYLLKHYCDVDSDKTF---QL---FDWRH 459 (1973)
Q Consensus 414 ------i--~----~-~n--l--FDT~l--------AA~lLg---~~~~sLa~Lv~~ylgv~ldK~~---q~---sDW~~ 459 (1973)
+ . + .+ + ++... ...+.+ .-..||+.+++.+.. ...|+. .. .+|
T Consensus 80 ~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~~~~SL~~~a~~f~~-~~~K~~~py~~~~~~~~-- 156 (575)
T 2py5_A 80 KWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKLPFPVKKIAKDFKL-TVLKGDIDYHKERPVGY-- 156 (575)
T ss_dssp EECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHSCSCHHHHHHHTTC-CCCSSCCCTTSCCCTTC--
T ss_pred ccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhhhhhhHHHHHHHhCC-cccCCccCccccCcccc--
Confidence 1 0 1 00 0 11110 001111 113699998887653 222221 11 123
Q ss_pred CCCCchhHhHHHHhHHHHHHHHHH
Q psy15183 460 RPLPEPAIQYARTDTHYLLYVYDC 483 (1973)
Q Consensus 460 RPLs~eql~YAa~Da~~Ll~L~d~ 483 (1973)
-+.++.+.|+..||..|..++..
T Consensus 157 -~~~~~~~~Y~~~Dv~ll~~i~~~ 179 (575)
T 2py5_A 157 -KITPEEYAYIKNDIQIIAEALLI 179 (575)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999887764
No 113
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=39.10 E-value=17 Score=44.26 Aligned_cols=74 Identities=11% Similarity=-0.068 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHhcCC-HHHHHHhhcCEEEECC-CCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceecccccc
Q psy15183 1377 AGISETLNFVLNSYP-QHIAQSLANNIFVTGS-LCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFS 1452 (1973)
Q Consensus 1377 ~gL~e~I~~sI~~~~-~d~r~~L~~NIvLTGG-~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSila 1452 (1973)
.||..+|.+-|.++. .-.++.=..+|++||| .+.-|++.+.|...|.-... ..+++..+++++|..-+||.+++
T Consensus 283 ~gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~--g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 283 RATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSK--GQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTT--TSCCEEEETTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhc--CCeeEEEcCCccHHHHHHHHHHh
Confidence 577777777665442 1123444568999999 99999999999999853221 23567778899999999998653
No 114
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=37.15 E-value=1.5e+02 Score=39.72 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=59.6
Q ss_pred CCCceEeecchH-HHHHHHHH---hcCCc-------------------------ccc--cchHHHHHHH--CCCCCCcHH
Q psy15183 1836 DKNIVKVFHGAD-SDIKWLQK---DFGLY-------------------------VVG--MFDTHQACKF--LPMPRQSLA 1882 (1973)
Q Consensus 1836 dp~I~KV~Hg~K-~Di~~Lqr---~~GI~-------------------------l~n--lfDT~lAayL--L~~~~~sLa 1882 (1973)
||.|+ +|||.. +|+..|.+ .+|+. +.+ ++|++.+.+- +..++++|+
T Consensus 219 dPDii-~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~SysL~ 297 (786)
T 3k59_A 219 DPDVI-IGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLE 297 (786)
T ss_dssp CCSEE-EESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSCCSHH
T ss_pred CCCEE-EecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCCCCHH
Confidence 67764 899975 68887742 23332 111 4688776663 567889999
Q ss_pred HHHHHHcCCCCCc-c-----ccccc-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1883 YLLKHYCDVDSDK-T-----FQLFD-WRHRPLPEPAIQYARTDTHYLLYVYDCM 1929 (1973)
Q Consensus 1883 ~La~~yLg~~l~K-~-----~q~sd-W~~RPLs~eqi~YAa~DA~~LL~Lyd~L 1929 (1973)
.+++++||..... . .+... |... ....+.|...||..+++|+.++
T Consensus 298 ~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~--~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 298 TVAQELLGEGKSIDNPWDRMDEIDRRFAED--KPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHHHHHHCCCCC-CCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCccccHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999964211 0 11222 2222 2466799999999999999885
No 115
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=36.21 E-value=8.9 Score=44.61 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=40.2
Q ss_pred cCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEecCCCcccceeccccccccccccccc
Q psy15183 1400 NNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFA 1461 (1973)
Q Consensus 1400 ~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl~sf~~~~ 1461 (1973)
..|+++||.+..+++.+.+...|.. .|..++.+.+..=+||+++|....-...|
T Consensus 210 ~~i~~~GG~a~n~~~~~~~~~~lg~--------~v~~p~~~~~~~AlGAAl~A~~~~~~~~~ 263 (270)
T 1hux_A 210 KDVVMTGGVAQNYGVRGALEEGLGV--------EIKTSPLAQYNGALGAALYAYKKAAKSAW 263 (270)
T ss_dssp SSEEEESGGGGCHHHHHHHHHHHCS--------CEECCGGGGGHHHHHHHHHHHHHTTC---
T ss_pred CeEEEeCccccCHHHHHHHHHHHCC--------CeEeCCCcchHhHHHHHHHHHHhhhcccc
Confidence 6799999999999999999988742 35667778887889999888553333344
No 116
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=36.08 E-value=2.5e+02 Score=38.01 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=61.9
Q ss_pred hHHHHHHHHcCCCceEeecch-HHHHHHHHH---hcCCc-------c--------cc--cchHHHHH-------HHCC--
Q psy15183 1826 DLEVLNEVLTDKNIVKVFHGA-DSDIKWLQK---DFGLY-------V--------VG--MFDTHQAC-------KFLP-- 1875 (1973)
Q Consensus 1826 ~l~~L~~lLedp~I~KV~Hg~-K~Di~~Lqr---~~GI~-------l--------~n--lfDT~lAa-------yLL~-- 1875 (1973)
.+..+..++.++. +-||||. .+|+-.|.+ .+|+. + .+ .+|++... |..+
T Consensus 260 LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~k 338 (847)
T 1s5j_A 260 LLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGK 338 (847)
T ss_dssp HHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTC
T ss_pred HHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccccc
Confidence 3566777888876 5789997 579988753 24552 1 11 35766432 2222
Q ss_pred CCCCcHHHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15183 1876 MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 1927 (1973)
Q Consensus 1876 ~~~~sLa~La~~yLg~~l~K~~q~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd 1927 (1973)
..+++|+.+++.+||....... ..|. +.-....+.|...||..+++|+.
T Consensus 339 l~sysL~~Va~~~Lg~~K~dv~--~~i~-~~~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 339 YNEYNLDAVAKALLGTSKVKVD--TLIS-FLDVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp CSSCSHHHHHHHHHCCCCC--S--SCTT-TCCHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccHHHHHHHHhCCCCcchh--Hhhh-hccHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999996432111 1222 11235667999999999999853
No 117
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=36.07 E-value=1.9e+02 Score=33.70 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCEEEECCCCC-cccHHHHHHHHHhhcCCCC--CceEEEecCCCcccceeccccccc
Q psy15183 1379 ISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ-LPGFVERLNKDLLENRPFQ--SHFSVSLAENPELDAWSGARQFSL 1453 (1973)
Q Consensus 1379 L~e~I~~sI~~~~~d~r~~L~~NIvLTGG~S~-ipGf~eRL~~EL~~l~p~~--~~i~V~~~~dp~~~aW~GaSilas 1453 (1973)
|..+|.+.+..+++ ..|+|.||.+. .+-|.++|++.+....... ..+.|..+.-...++-+||..++.
T Consensus 250 L~~~i~~l~~~l~p-------~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~ 320 (326)
T 2qm1_A 250 LGLATGNLGNTLNP-------DSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLAL 320 (326)
T ss_dssp HHHHHHHHHHHHCC-------SEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCC-------CEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHH
Confidence 45556665555543 35899999885 5778899998888764321 135666665555667789887764
No 118
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=32.17 E-value=22 Score=48.22 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=66.8
Q ss_pred ceeeecchhHhHHHHHHHhCCcccc--eeehhhhhhhc-C----------------------------------------
Q psy15183 394 IVKVFHGADSDIKWLQKDFGLYVVG--MFDTHQACKFL-P---------------------------------------- 430 (1973)
Q Consensus 394 I~KV~H~ak~Dl~~L~r~~Gi~~~n--lFDT~lAA~lL-g---------------------------------------- 430 (1973)
-+.||||..+|-..+...|.+.... .+|||-.+-.. |
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 3459999999998876788877543 45987543211 0
Q ss_pred ------C-CCc--cHHHHHHHHcCC-CCCcccccccCCCCCCC------chhHhHHHHhHHHHHHHHHHHHHHHHHhc
Q psy15183 431 ------M-PRQ--SLAYLLKHYCDV-DSDKTFQLFDWRHRPLP------EPAIQYARTDTHYLLYVYDCMKLDLSAAA 492 (1973)
Q Consensus 431 ------~-~~~--sLa~Lv~~ylgv-~ldK~~q~sDW~~RPLs------~eql~YAa~Da~~Ll~L~d~L~~~L~e~g 492 (1973)
. .-. ||+++..-|||. .++|.. +..+....+. .+.+.|.|.||..+..+|..+.....++-
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~-Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~erc 351 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLEKEP-RELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERC 351 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS--SCS-SSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccChhh-HhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 0 114 799999999997 787754 2333333332 34458999999999999999999887764
No 119
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=32.15 E-value=4.2e+02 Score=30.16 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=16.2
Q ss_pred eEEEEcCcceEEEEEeCCC
Q psy15183 870 PIVFDNGAWCCRVGWASCE 888 (1973)
Q Consensus 870 ~IVID~GS~~iKaG~Age~ 888 (1973)
-++||+|..++|.|+-.++
T Consensus 5 ~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 5 YLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp EEEEEECSSEEEEEEESSS
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 3899999999999987544
No 120
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=30.81 E-value=24 Score=44.97 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=33.1
Q ss_pred cCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEe-----cCCCcccceecc
Q psy15183 1400 NNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSL-----AENPELDAWSGA 1448 (1973)
Q Consensus 1400 ~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~-----~~dp~~~aW~Ga 1448 (1973)
..|+||||+|+++|+.+-..+.|..+ ++++-. ...|.|++-.|-
T Consensus 552 ~~VVLTGGsSql~gI~elA~~iL~~~-----~VRiGrP~~~g~~gP~fAtAvGL 600 (607)
T 1nbw_A 552 AFVVLVGGSSLDFEIPQLITEALSHY-----GVVAGQGNIRGTEGPRNAVATGL 600 (607)
T ss_dssp CEEEEESGGGGSSSHHHHHHHHHHTT-----TCEEEECCGGGTSCSCCHHHHHH
T ss_pred CCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCchHHHHHHH
Confidence 56999999999999999999999763 233333 447777776664
No 121
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=29.99 E-value=3.7e+02 Score=34.59 Aligned_cols=130 Identities=10% Similarity=0.098 Sum_probs=73.7
Q ss_pred CceeEEEeeeccCCccCCceeEEEEEeCC--ceEEEEcCCchhhHHHHHHHHcCCCceEeecchHHHHHHHHHh---cC-
Q psy15183 1785 QQEIAIDLEYHNYRSYQGYTCLMQISTRD--KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKD---FG- 1858 (1973)
Q Consensus 1785 a~~IavDlE~~~~~s~~g~v~LlQISt~~--~~~iiD~l~l~~~l~~L~~lLedp~I~KV~Hg~K~Di~~Lqr~---~G- 1858 (1973)
...+++|+|+.. +...+.+..+.+.+.+ ..|..+. .+..+.+++.+-++.-++||+++|...|.+. .|
T Consensus 6 ~~i~~~D~Et~~-d~~~~~~~~i~~~~~~~~~~~~~~~-----~l~~fi~~~~~~~~~i~~hNl~FD~~~l~~~~~~~~~ 79 (575)
T 2py5_A 6 RKMYSCAFETTT-KVEDCRVWAYGYMNIEDHSEYKIGN-----SLDEFMAWVLKVQADLYFHNLKFAGAFIINWLERNGF 79 (575)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEEESSCTTCEEEES-----CHHHHHHHHHHHCCEEEETTHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEEeec-CCCCCceEEEEEEeCCceEEEEech-----hHHHHHHHHHHcCCEEEEEChhhhHHHHHHHHHHhCc
Confidence 357899999842 3334445444444432 2333321 1333334444444556889999999887533 22
Q ss_pred ------C--c----cc-c---------------------cchHHHHHHHCCCCCCcHHHHHHHHcCCCCCcc---c---c
Q psy15183 1859 ------L--Y----VV-G---------------------MFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT---F---Q 1898 (1973)
Q Consensus 1859 ------I--~----l~-n---------------------lfDT~lAayLL~~~~~sLa~La~~yLg~~l~K~---~---q 1898 (1973)
+ . +. + +.|+... + ..||+.+++.|.... .|. + +
T Consensus 80 ~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~---~---~~SL~~~a~~f~~~~-~K~~~py~~~~ 152 (575)
T 2py5_A 80 KWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKK---L---PFPVKKIAKDFKLTV-LKGDIDYHKER 152 (575)
T ss_dssp EECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHH---S---CSCHHHHHHHTTCCC-CSSCCCTTSCC
T ss_pred ccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhh---h---hhhHHHHHHHhCCcc-cCCccCccccC
Confidence 1 0 10 0 1233322 2 359999998775422 221 1 1
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15183 1899 LFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 1930 (1973)
Q Consensus 1899 ~sdW~~RPLs~eqi~YAa~DA~~LL~Lyd~L~ 1930 (1973)
..+| .+.++.+.|+..|+..+..++....
T Consensus 153 ~~~~---~~~~~~~~Y~~~Dv~ll~~i~~~~f 181 (575)
T 2py5_A 153 PVGY---KITPEEYAYIKNDIQIIAEALLIQF 181 (575)
T ss_dssp CTTC---CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123 3678899999999999999888663
No 122
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=29.01 E-value=6.1 Score=47.96 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=34.1
Q ss_pred hhcCEEEECCCCCccc--HHHHHHHHHhhcCCCCCceEEEecCCCcccceecccccccc
Q psy15183 1398 LANNIFVTGSLCQLPG--FVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLS 1454 (1973)
Q Consensus 1398 L~~NIvLTGG~S~ipG--f~eRL~~EL~~l~p~~~~i~V~~~~dp~~~aW~GaSilasl 1454 (1973)
.+..|+||||+|.++| +.+.|++++ |. . .+|.++.-+|..+++..
T Consensus 290 ~~~~Ivl~GGGa~l~~~~l~~~i~~~~----~~------~--~~p~~anA~G~~~~~~~ 336 (355)
T 3js6_A 290 SIDRIIVTGGGANIHFDSLSHYYSDVF----EK------A--DDSQFSNVRGYEKLGEL 336 (355)
T ss_dssp SCSEEEEESTTHHHHHHHHHHHSSSCE----EC------C--SSGGGHHHHHHHHHHHH
T ss_pred hccEEEEECcchhcchhhHHHHHHHHC----CC------C--CCcHHHHHHHHHHHHHH
Confidence 4578999999999988 767666543 21 1 89999999998877643
No 123
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=28.88 E-value=2.8e+02 Score=37.51 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCCceeeecch-hHhHHHHHHH---hCCcc-----------------cceeehhhhh-------hhcC--C
Q psy15183 382 LEVLNEVLTDKNIVKVFHGA-DSDIKWLQKD---FGLYV-----------------VGMFDTHQAC-------KFLP--M 431 (1973)
Q Consensus 382 l~~L~~lL~dp~I~KV~H~a-k~Dl~~L~r~---~Gi~~-----------------~nlFDT~lAA-------~lLg--~ 431 (1973)
+..+.+++.++. +-|+||. .+|+..|... +|+.. ...+|++... |..+ .
T Consensus 261 L~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl 339 (847)
T 1s5j_A 261 LGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKY 339 (847)
T ss_dssp HHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCC
T ss_pred HHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccccc
Confidence 567777888886 4689997 5899887643 45421 1135665332 1122 3
Q ss_pred CCccHHHHHHHHcCCCCCcccccccCCCCCCCchhHhHHHHhHHHHHHHHHH
Q psy15183 432 PRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDC 483 (1973)
Q Consensus 432 ~~~sLa~Lv~~ylgv~ldK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~ 483 (1973)
.+++|..+++.+||..-..- . ..|. +.-....+.|...||..++.|+..
T Consensus 340 ~sysL~~Va~~~Lg~~K~dv-~-~~i~-~~~~~~l~~Ycl~Da~lt~~L~~~ 388 (847)
T 1s5j_A 340 NEYNLDAVAKALLGTSKVKV-D-TLIS-FLDVEKLIEYNFRDAEITLQLTTF 388 (847)
T ss_dssp SSCSHHHHHHHHHCCCCC---S-SCTT-TCCHHHHHHHHHHHHHHHHHTTTH
T ss_pred ccccHHHHHHHHhCCCCcch-h-Hhhh-hccHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999642111 0 1232 111245669999999999998643
No 124
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=28.81 E-value=24 Score=44.87 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=33.5
Q ss_pred cCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEEEe-----cCCCcccceeccc
Q psy15183 1400 NNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSL-----AENPELDAWSGAR 1449 (1973)
Q Consensus 1400 ~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V~~-----~~dp~~~aW~GaS 1449 (1973)
..|+||||+|+++|+.+-..+.|..+ ++++-. ...|.|++-.|-.
T Consensus 550 ~~VVLTGGsSql~GI~ElA~~iL~~y-----~VRiGrP~~~gv~gP~fAtAvGLl 599 (610)
T 2d0o_A 550 PFVVLVGGSSLDFEVPQLVTDALAHY-----RLVAGRGNIRGSEGPRNAVATGLI 599 (610)
T ss_dssp CEEEEESGGGGCSSHHHHHHHHTTTS-----SCEEEECCGGGTSTTSCHHHHHHH
T ss_pred CCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCCcHHHHHHHH
Confidence 55999999999999999999988662 233333 4478887766643
No 125
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=28.44 E-value=1.2e+02 Score=38.65 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=64.3
Q ss_pred HHHHHHcCCCceeeecchhHhHHHHHHHhCC-cc--------------cceeehhhhhhhcC----CCCccHHHHHHHHc
Q psy15183 384 VLNEVLTDKNIVKVFHGADSDIKWLQKDFGL-YV--------------VGMFDTHQACKFLP----MPRQSLAYLLKHYC 444 (1973)
Q Consensus 384 ~L~~lL~dp~I~KV~H~ak~Dl~~L~r~~Gi-~~--------------~nlFDT~lAA~lLg----~~~~sLa~Lv~~yl 444 (1973)
.+.+.+.+.+...|+||+-.|+..|++.|=- .| ..++||...+.... .+..+|..|.+.+-
T Consensus 267 ~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~ 346 (507)
T 3d45_A 267 RVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLK 346 (507)
T ss_dssp HHHHHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTT
T ss_pred HHHHHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHh
Confidence 3444555556778999999999988776532 11 45889998877532 23568999888753
Q ss_pred CCC--CCccc---ccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15183 445 DVD--SDKTF---QLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 489 (1973)
Q Consensus 445 gv~--ldK~~---q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~ 489 (1973)
... ...-. +...+. ......+=|+-|+..+-.++-.|...|.
T Consensus 347 ~~~~~~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 347 ETPFDPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp STTCCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 211 11100 111111 1123346699999999999999988774
No 126
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=27.22 E-value=1.5e+02 Score=33.82 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=40.1
Q ss_pred eechhhHHhhhhcCC-CCceEEEEeeCCCceEEEEee-cCEEccC-CcEEeeccHHHHHHHHHHHHhhh
Q psy15183 996 CYGIDSLFSYQYNGW-EGQSGVIISCGYQCTHVIPVI-NGCIDAS-KAKRIDLGGFSVIHHLHKLLQLK 1061 (1973)
Q Consensus 996 ~~~~~sllS~ya~G~-g~~tgLVVDiG~s~T~V~PV~-dG~vl~~-si~rl~vGG~~lt~~L~~lL~~k 1061 (1973)
..++...+.++|+.. .+....|+|+|.+.++++-+. +|.+... .-.....||.+..+.+.+.|...
T Consensus 75 ~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~ 143 (276)
T 4ehu_A 75 KQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVD 143 (276)
T ss_dssp EECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHHTCC
T ss_pred cccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHhccC
Confidence 344555555555432 125668999999999998774 5544321 11234467777777777777544
No 127
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=26.11 E-value=12 Score=45.02 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=31.8
Q ss_pred hhcCEEEECCCCCcccHHHHHHHHHhhcCCCCCceEE-EecCCCcccceeccccccc
Q psy15183 1398 LANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSV-SLAENPELDAWSGARQFSL 1453 (1973)
Q Consensus 1398 L~~NIvLTGG~S~ipGf~eRL~~EL~~l~p~~~~i~V-~~~~dp~~~aW~GaSilas 1453 (1973)
....|+||||+|.+ +.+.|.++ ++. +.+ ....+|.++.-+|+..++.
T Consensus 296 ~i~~IvL~GGga~l--l~~~l~~~----~~~---~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 296 RVTSLIPVGGGSNL--IGDRFEEI----APG---TLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp GEEEEEEESTTHHH--HGGGGGGG----STT---CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred cccEEEEECCcHHH--HHHHHHHH----CcC---cEEeccCCCcHHHHHHHHHHHHh
Confidence 44889999999998 55555444 331 112 2367999999899876643
No 128
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=25.50 E-value=1e+02 Score=38.47 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhcCcCCCCCCCCcEEEEeCCCCc------HHHHHHHHHHHHHhc---CC--CeEeech---hhHHhhh
Q psy15183 941 DIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNP------NYSRSLMSELLFECY---QV--PSVCYGI---DSLFSYQ 1006 (1973)
Q Consensus 941 d~le~i~~~if~~L~i~~~~~~~~pVlltEp~~~p------~~~Re~l~ElLFE~~---~v--pav~~~~---~sllS~y 1006 (1973)
+.+..+++.+...+-.+. ....||.+.-..-.. ...++.+.+-+-+.+ +| ..|.+.. +++++..
T Consensus 89 ~~l~~Ll~~a~~~vp~~~--~~~tpi~~~ATAgmR~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi 166 (452)
T 3zx3_A 89 AYLAECMKMSTERIPASK--QHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWI 166 (452)
T ss_dssp HHHHHHHHHHHHHSCHHH--HTTCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHH--cCCccEEEEeeHHHhhccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHH
Confidence 456667776654321111 113466655433211 112344444333333 33 3555543 4555554
Q ss_pred hc----CC-C---CceEEEEeeCCCceEEEEeecCEE--ccCCcEEeeccH
Q psy15183 1007 YN----GW-E---GQSGVIISCGYQCTHVIPVINGCI--DASKAKRIDLGG 1047 (1973)
Q Consensus 1007 a~----G~-g---~~tgLVVDiG~s~T~V~PV~dG~v--l~~si~rl~vGG 1047 (1973)
+. |. + ..+..|||+|.++|.|+-+.++.. -+.....+.++|
T Consensus 167 ~vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~~~~~~~~~~~~~~l~l~g 217 (452)
T 3zx3_A 167 TINYLLGRFKTPGGSTFGALDLGGASTQITFVPLNSTLEAPETSLQFRLYG 217 (452)
T ss_dssp HHHHHTTTTC---CCCCEEEEECSSEEEEEECCSSCCSSSGGGEEEEEETT
T ss_pred HHHhhhccccCCCCCceEEEecCCCceEEEeccCCCccCCCCceEEEEECC
Confidence 43 31 0 146678899999999998876642 223445566555
No 129
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=23.46 E-value=2.3e+02 Score=31.02 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=15.8
Q ss_pred CCeEEEEeeeccCCccCCcE
Q psy15183 340 QQEIAIDLEYHNYRSYQGYT 359 (1973)
Q Consensus 340 ~~~IavDtE~~~~~s~~g~l 359 (1973)
...+.+|+|+.+.++....+
T Consensus 9 ~~~v~~D~ETTGL~p~~d~I 28 (186)
T 3tr8_A 9 DNLIWLDLEMTGLDPERDRI 28 (186)
T ss_dssp TCEEEEEEEESSSCTTTCCE
T ss_pred CcEEEEEEECCCCCCCCCce
Confidence 46799999999988766543
No 130
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=23.28 E-value=1.6e+02 Score=36.57 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=61.2
Q ss_pred HHHHHcCCCceeeecchhHhHHHHHHHh-CCcc--------------cceeehhhhhhhcC----CCCccHHHHHHHHcC
Q psy15183 385 LNEVLTDKNIVKVFHGADSDIKWLQKDF-GLYV--------------VGMFDTHQACKFLP----MPRQSLAYLLKHYCD 445 (1973)
Q Consensus 385 L~~lL~dp~I~KV~H~ak~Dl~~L~r~~-Gi~~--------------~nlFDT~lAA~lLg----~~~~sLa~Lv~~ylg 445 (1973)
+.+.+...+.+-||||+-.|+..+++.| |-.| ..++||.+.+.... .+..+|+.|...+..
T Consensus 273 V~~~L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~ 352 (430)
T 2a1r_A 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKE 352 (430)
T ss_dssp HHHHHHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTS
T ss_pred HHHHHHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHh
Confidence 3334444444569999999999877665 3211 45899988775543 234689988776532
Q ss_pred CCC--CcccccccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15183 446 VDS--DKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 489 (1973)
Q Consensus 446 v~l--dK~~q~sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~ 489 (1973)
... +.-..-.+...-.-..++.+=|+-|+..+-.++-.|...|.
T Consensus 353 ~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~ 398 (430)
T 2a1r_A 353 TPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398 (430)
T ss_dssp TTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 211 11100000000001134556799999999999999988774
No 131
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=21.31 E-value=2.4e+02 Score=33.33 Aligned_cols=53 Identities=13% Similarity=-0.040 Sum_probs=37.5
Q ss_pred HHHHHhcCCCeEeechhhHHhhhhc-----CCCCceEEEEeeCCCceEEEEeecCEEccC
Q psy15183 984 ELLFECYQVPSVCYGIDSLFSYQYN-----GWEGQSGVIISCGYQCTHVIPVINGCIDAS 1038 (1973)
Q Consensus 984 ElLFE~~~vpav~~~~~sllS~ya~-----G~g~~tgLVVDiG~s~T~V~PV~dG~vl~~ 1038 (1973)
+.|=+.|++| |++.+++-++++|. +.+..+.++|-+|.+ .-..-|.+|.+...
T Consensus 125 ~~l~~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii~~G~l~~G 182 (343)
T 2yhw_A 125 TPLSDTLHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGIIHQHELIHG 182 (343)
T ss_dssp HHHHHHHCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHHHHHHCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEEECCEEecC
Confidence 3344567888 88888988876653 222378999999976 55667789988753
No 132
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=20.50 E-value=1.8e+02 Score=33.50 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=55.5
Q ss_pred CCCceeeecchhHhHHHHHHHh-C---------------CcccceeehhhhhhhcCCCCccHHHHHHHHcCCCCCccccc
Q psy15183 391 DKNIVKVFHGADSDIKWLQKDF-G---------------LYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQL 454 (1973)
Q Consensus 391 dp~I~KV~H~ak~Dl~~L~r~~-G---------------i~~~nlFDT~lAA~lLg~~~~sLa~Lv~~ylgv~ldK~~q~ 454 (1973)
+++|.+|.|...+|.-.|.+-+ | .+...++||...+..+..-.-||.+|++.+ |+.-
T Consensus 138 ~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~gL~~la~~L-~v~r------ 210 (252)
T 2d5r_A 138 CEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQL-ELER------ 210 (252)
T ss_dssp SSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHH-TCCC------
T ss_pred CCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccCCCHHHHHHHc-CCCc------
Confidence 4567777777777775544321 1 122478999998888753346899998875 4321
Q ss_pred ccCCCCCCCchhHhHHHHhHHHHHHHHHHHHHHHH
Q psy15183 455 FDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLS 489 (1973)
Q Consensus 455 sDW~~RPLs~eql~YAa~Da~~Ll~L~d~L~~~L~ 489 (1973)
.. ..+-|+.|+..+...+-+|+...-
T Consensus 211 ----~g-----~~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 211 ----IG-----PQHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp ----CS-----STTSHHHHHHHHHHHHHHHHHHTS
T ss_pred ----cC-----cccchhhhHHHHHHHHHHHHHHhc
Confidence 01 123489999999999999977664
Done!