RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15183
(1973 letters)
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase;
2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Length = 428
Score = 429 bits (1105), Expect = e-135
Identities = 191/406 (47%), Positives = 264/406 (65%), Gaps = 31/406 (7%)
Query: 241 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL---------------------- 278
I RPQL+F+ K+DNS F PK+ KPNA KPL L
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 279 -------EKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 331
+ + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 332 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 391
+L +L QE A++LE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 392 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 451
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 452 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 511
+QL DWR RPLPE + YAR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 512 LKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 570
K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L
Sbjct: 301 KKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMML 360
Query: 571 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 616
++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 361 KIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKS 406
Score = 337 bits (866), Expect = e-103
Identities = 148/316 (46%), Positives = 202/316 (63%), Gaps = 30/316 (9%)
Query: 1686 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL---------------------- 1723
I RPQL+F+ K+DNS F PK+ KPNA KPL L
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 1724 -------EKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 1776
+ + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 1777 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 1836
+L +L QE A++LE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 1837 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 1896
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 1897 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 1956
+QL DWR RPLPE + YAR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 1957 LKYEKPVFNEEGYMNI 1972
K+ KP+F +E Y+ +
Sbjct: 301 KKFIKPIFTDESYLEL 316
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance,
RNA processing, hydrolase, gene regulation; 2.10A
{Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB:
2hbk_A 2hbl_A* 2hbm_A*
Length = 410
Score = 427 bits (1100), Expect = e-135
Identities = 161/400 (40%), Positives = 233/400 (58%), Gaps = 24/400 (6%)
Query: 241 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 296
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 3 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 62
Query: 297 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 356
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 63 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 122
Query: 357 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 416
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 123 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 182
Query: 417 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 476
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 183 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 242
Query: 477 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN--------------EE 522
LL +YD ++ L K VL SRN+ K ++E + E
Sbjct: 243 LLNIYDQLRNKL--IESNKLAGVLY---ESRNVAKRRFEYSKYRPLTPSSEVYSPIEKES 297
Query: 523 GYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQG 582
+ + + + +++ +RELY+WRD IAR DES +V+PN +L + P D+ G
Sbjct: 298 PWKILMYQYN-IPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIG 356
Query: 583 IFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQP 622
+ + N V + V+++ + +I A E
Sbjct: 357 VVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPI 396
Score = 339 bits (871), Expect = e-104
Identities = 134/290 (46%), Positives = 185/290 (63%), Gaps = 9/290 (3%)
Query: 1686 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIES----FCHPYEYELD 1741
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D E+ + HPYEYE+D
Sbjct: 3 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 62
Query: 1742 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 1801
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 63 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 122
Query: 1802 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 1861
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 123 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 182
Query: 1862 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 1921
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 183 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 242
Query: 1922 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMN 1971
LL +YD ++ L K VL SRN+ K ++E + +
Sbjct: 243 LLNIYDQLRNKL--IESNKLAGVLY---ESRNVAKRRFEYSKYRPLTPSS 287
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase,
tRNA processing, hydrolase,translation; 1.60A
{Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Length = 375
Score = 283 bits (725), Expect = 3e-85
Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 10/288 (3%)
Query: 323 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 382
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 441
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 442 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 501
Y V DK+ DW RPL E +YA D YLL + + ++ A+ G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS--GWLPAALD 181
Query: 502 TFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTG 561
R + + E V E+ + +I + L +Q L+ L WR R AR++D +
Sbjct: 182 EC---RLMQMRRQE-VVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVN 236
Query: 562 YVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 609
+V+ L +A+ +P + ++ H + A++ KA+
Sbjct: 237 FVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQ 283
Score = 211 bits (539), Expect = 3e-60
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 8/206 (3%)
Query: 1768 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 1827
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + D
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63
Query: 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQ-SLAYLLK 1886
L +L D +I K H D++ FG + DT F P A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 1887 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 1946
Y V DK+ DW RPL E +YA D YLL + + ++ A+ G L
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS--GWLPAALD 181
Query: 1947 TFTNSRNICKLKYEKPVFNEEGYMNI 1972
R + + E V E+ + +I
Sbjct: 182 EC---RLMQMRRQE-VVAPEDAWRDI 203
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 285 bits (730), Expect = 6e-85
Identities = 63/315 (20%), Positives = 113/315 (35%), Gaps = 15/315 (4%)
Query: 308 EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQIST 366
+EPK + +I SEL +A D E + Y L+Q
Sbjct: 5 DEPKLLAEPREGVPNVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKR 64
Query: 367 RDKD-YIVDTLKLRE---DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 422
++D L D N + D V + H + D+ + G+ +FDT
Sbjct: 65 DGAGIGLLDPQALAAAGADWNDFNRAVGD--AVWILHDSLQDLPGFD-ELGMEPQRLFDT 121
Query: 423 HQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 482
A + L + R LA + +H+ + K DW +RPLP YA D L+ +
Sbjct: 122 EIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELET 181
Query: 483 CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHAL-LNNQQKYA 541
M+ +L GK K + +M++ + + Q
Sbjct: 182 KMRAELKRQ--GKMEWAQE---EFDYALKEGLGPRKEHLIPWMHVSHITEVMRDRQALAI 236
Query: 542 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDI 601
+R L+ RD +AR+ D + +L + ++++A+ P + F + + V+ H
Sbjct: 237 VRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQ-FRSIRSINERVRIHTDSE 295
Query: 602 HAIILKARLQSLTKP 616
+ + K
Sbjct: 296 QDKMFERYAPIQRKI 310
Score = 212 bits (542), Expect = 6e-60
Identities = 48/225 (21%), Positives = 78/225 (34%), Gaps = 13/225 (5%)
Query: 1753 EEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQ-EIAIDLEYHNYRSYQGYTCLMQIST 1811
+EPK + +I SEL +A D E + Y L+Q
Sbjct: 5 DEPKLLAEPREGVPNVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKR 64
Query: 1812 RDKD-YIVDTLKLRE---DLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 1867
++D L D N + D V + H + D+ + G+ +FDT
Sbjct: 65 DGAGIGLLDPQALAAAGADWNDFNRAVGD--AVWILHDSLQDLPGFD-ELGMEPQRLFDT 121
Query: 1868 HQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYD 1927
A + L + R LA + +H+ + K DW +RPLP YA D L+ +
Sbjct: 122 EIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELET 181
Query: 1928 CMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNI 1972
M+ +L GK K + +M++
Sbjct: 182 KMRAELKRQ--GKMEWAQE---EFDYALKEGLGPRKEHLIPWMHV 221
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form,
hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A
2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Length = 208
Score = 130 bits (328), Expect = 3e-34
Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 11/173 (6%)
Query: 324 ITEPEQVT----QLVSELKQQQEIAIDLEYH--NYRSYQGYTCLMQISTRDKD-YIVDTL 376
E + + L + D+E+ + ++Q+ + Y+
Sbjct: 20 SYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHIS 79
Query: 377 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK--FLPMPRQ 434
+ + L +L +K+I K G + D L +DF + + +
Sbjct: 80 SMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETW 139
Query: 435 SLAYLLKHYCDV--DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 485
SL L+KH DK+ + +W + PL E YA TD + L +Y +
Sbjct: 140 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLG 192
Score = 130 bits (328), Expect = 3e-34
Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 11/173 (6%)
Query: 1769 ITEPEQVT----QLVSELKQQQEIAIDLEYH--NYRSYQGYTCLMQISTRDKD-YIVDTL 1821
E + + L + D+E+ + ++Q+ + Y+
Sbjct: 20 SYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHIS 79
Query: 1822 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACK--FLPMPRQ 1879
+ + L +L +K+I K G + D L +DF + + +
Sbjct: 80 SMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETW 139
Query: 1880 SLAYLLKHYCDV--DSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 1930
SL L+KH DK+ + +W + PL E YA TD + L +Y +
Sbjct: 140 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLG 192
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID; 1.35A
{Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB:
1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A*
1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1*
1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Length = 375
Score = 135 bits (341), Expect = 4e-34
Identities = 60/254 (23%), Positives = 120/254 (47%), Gaps = 17/254 (6%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER---GKKDGETQVGNDISNIE 922
D + +V DNG+ + G+A + P +F +++ +PR + G ++ VG++ +
Sbjct: 3 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 923 AVRFQLKTQFDKNVVTHYDIQEQIFDYAFSH-LSINTEGNVNHPIVLTEPFLNPNYSRSL 981
+ LK + ++T++D E+I+ + F + L + E HP +LTE LNP +R
Sbjct: 63 GI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE---EHPTLLTEAPLNPKANREK 118
Query: 982 MSELLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAK 1041
M++++FE + VP++ I ++ S +G +G+++ G TH +P+ G
Sbjct: 119 MTQIMFETFNVPAMYVAIQAVLSLYASG--RTTGIVLDSGDGVTHNVPIYEGYALPHAIM 176
Query: 1042 RIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLD---- 1097
R+DL G + +L K+L + S + + ++ +VA D+ +
Sbjct: 177 RLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSL 236
Query: 1098 ---AEFYDSNVVKV 1108
E D V+ +
Sbjct: 237 EKSYELPDGQVITI 250
Score = 80.1 bits (198), Expect = 1e-15
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 1337 TSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQ 1396
+S + E+ + + IG ER PE LFQPS +G AGI ET + I +
Sbjct: 232 SSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRK 291
Query: 1397 SLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE--LDAWSGARQFSLS 1454
L N ++G PG +R+ K++ P S + + PE W G +
Sbjct: 292 DLYANNVMSGGTTMYPGIADRMQKEITALAP--STMKIKIIAPPERKYSVWIGGSILASL 349
Query: 1455 ENFHDFAVTQSDYQEKG 1471
F +T+ +Y E G
Sbjct: 350 STFQQMWITKQEYDEAG 366
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A
{Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B*
2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B*
3rse_B 2p9k_B*
Length = 394
Score = 129 bits (326), Expect = 5e-32
Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 26/256 (10%)
Query: 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER-----GKKDGETQVGNDISNIEAV 924
+V DNG + G+A P IF L+ +P + + VG++ S + ++
Sbjct: 8 VVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSM 67
Query: 925 RFQLKTQFDKNVVTHYDIQEQIFDYAFSH--LSINTEGNVNHPIVLTEPFLNPNYSRSLM 982
++ + +V ++D + ++DY F L+I+T N I+LTEP +NP +R +
Sbjct: 68 -LEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTR---NCKILLTEPPMNPTKNREKI 123
Query: 983 SELLFECYQVPSVCYGID---SLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASK 1039
E++FE YQ V I +L++ +GV++ G TH+ PV G
Sbjct: 124 VEVMFETYQFSGVYVAIQAVLTLYAQGL-----LTGVVVDSGDGVTHICPVYEGFSLPHL 178
Query: 1040 AKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWDYGFVATDYREHLRKWLDAE 1099
+R+D+ G + +L KLL L+ + +S + +V + + + L+
Sbjct: 179 TRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETT 238
Query: 1100 FY-------DSNVVKV 1108
D ++KV
Sbjct: 239 VLVESYTLPDGRIIKV 254
Score = 74.4 bits (183), Expect = 9e-14
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 1351 NQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ 1410
+ +G ER PE LFQP ++ G++E L + + +I ++G
Sbjct: 250 RIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTM 309
Query: 1411 LPGFVERLNKDL---------LENRPFQSHFSVSLAENPE--LDAWSGARQF-SLSENFH 1458
PG RL ++L + S F + + + P + G + ++
Sbjct: 310 YPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKD 369
Query: 1459 DFAVTQSDYQEKG 1471
+F +T+ +YQEKG
Sbjct: 370 NFWMTRQEYQEKG 382
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 126 bits (318), Expect = 9e-31
Identities = 62/274 (22%), Positives = 106/274 (38%), Gaps = 44/274 (16%)
Query: 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKP-----------RKERGKKDGETQVGNDI 918
V D G ++G+A +P I + IA R +G D + +G++
Sbjct: 7 ACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDE- 65
Query: 919 SNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYAFSH-LSINTEGNVNHPIVLTEPFLNPNY 977
IE + K +V +D+ E+ + L E +H +LTEP LN
Sbjct: 66 -AIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE---DHYFLLTEPPLNTPE 121
Query: 978 SRSLMSELLFECYQVPSVCYGID---SLFSY---QYNGWEGQSGVIISCGYQCTHVIPVI 1031
+R +E++FE + VP + + +L + + G +G +I G THVIPV
Sbjct: 122 NREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVA 181
Query: 1032 NGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRSEELLWD----YGFVATD 1087
G + S K I + G + + + +LL+ + I P +S E Y +V D
Sbjct: 182 EGYVIGSCIKHIPIAGRDITYFIQQLLRDREV----GIPPEQSLETAKAVKERYSYVCPD 237
Query: 1088 YREHLRKWL-------------DAEFYDSNVVKV 1108
+ K+ +A + V
Sbjct: 238 LVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDV 271
Score = 75.5 bits (186), Expect = 5e-14
Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 20/166 (12%)
Query: 1326 EEILRQHDPEFTSLNQEQEL---SPKEANQLHIGVERMCGPECLFQPSMLGS-IQAGISE 1381
+ ++D + + ++ K+ + +G ER GPE F P ISE
Sbjct: 239 VKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISE 298
Query: 1382 TLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPE 1441
++ V+ + P + + L NI ++G F RL +DL + S L+
Sbjct: 299 VVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRL 358
Query: 1442 LD----------------AWSGARQFSLSENFHDFAVTQSDYQEKG 1471
W G + + F+ T+ DY+E G
Sbjct: 359 KPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIG 404
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural
protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Length = 498
Score = 123 bits (309), Expect = 3e-29
Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 8/206 (3%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKERGKKDGETQVGNDISNIEAVR 925
D +V D G++ +G++ + P I ++ K + G K I
Sbjct: 21 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKK--IFSEQSIGIPRKD- 77
Query: 926 FQLKTQFDKNVVTHYDIQEQIFDYAFS-HLSINTEGNVNHPIVLTEPFLNPNYSRSLMSE 984
++LK + +V +D ++ + +A L +N+ P +LTEP N +R E
Sbjct: 78 YELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSG--IPALLTEPVWNSTENRKKSLE 135
Query: 985 LLFECYQVPSVCYGIDSLFSYQYNGWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRID 1044
+L E Q + S G + +++ G+ V P+++G + +R
Sbjct: 136 VLLEGMQFEACYLAPTSTCVSFAAG--RPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNF 193
Query: 1045 LGGFSVIHHLHKLLQLKYPSHINSIT 1070
+ G + H + K L+ K + +I
Sbjct: 194 IAGKFINHLIKKALEPKEIIPLFAIK 219
Score = 74.6 bits (183), Expect = 1e-13
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 1351 NQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ 1410
N E P +P + G+++ + + S + +LA+N+ +TG
Sbjct: 366 NSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSS 425
Query: 1411 LPGFVERLNKDLLENRPFQSHFSVSLAENPELD-----AWSGARQFSLSENFHDFAVTQS 1465
+PG +RL +L + P + +W G + FH V +
Sbjct: 426 IPGLSDRLMTELNKILP---SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKK 482
Query: 1466 DYQEKG 1471
+Y+E G
Sbjct: 483 EYEEVG 488
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A
{Schizosaccharomyces pombe}
Length = 427
Score = 121 bits (306), Expect = 4e-29
Identities = 53/262 (20%), Positives = 103/262 (39%), Gaps = 38/262 (14%)
Query: 866 DSSLPIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKE--------------------- 904
++PI+ DNG ++G+A + P+ +F +IA
Sbjct: 3 SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGH 62
Query: 905 ----RGKKDGETQVGNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYAFSH-LSINTE 959
R +D + +GND + + L + ++D E+ + + L E
Sbjct: 63 LSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE 122
Query: 960 GNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFS------YQYNGWEGQ 1013
+H +LTEP LNP +R +E++FE + + + ++ +
Sbjct: 123 ---DHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSL 179
Query: 1014 SGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSR 1073
+G ++ G TH+IPV G + S K + L G V + + LL+ + + T R
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Query: 1074 SEELLWDYGFVATDYREHLRKW 1095
+E + +V D + ++
Sbjct: 240 IKE---ECCYVCPDIVKEFSRF 258
Score = 74.8 bits (184), Expect = 9e-14
Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 24/173 (13%)
Query: 1314 DSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERMCGPECLFQPSMLG 1373
D +E R + ++ E + + + +G ER PE F P +
Sbjct: 250 DIVKEFSRFDREPDRYLKYASESIT---------GHSTTIDVGFERFLAPEIFFNPEIAS 300
Query: 1374 S-IQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHF 1432
S + E ++ V+ S P + + L NI ++G F RL +DL + H
Sbjct: 301 SDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHR 360
Query: 1433 SVSLAENPELD--------------AWSGARQFSLSENFHDFAVTQSDYQEKG 1471
S L+ W G + + F + T++DY+E G
Sbjct: 361 SEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYG 413
>1nvp_D Transcription initiation factor IIA gamma chain; transcription
regulation, DNA, complex, transcription/DNA complex;
2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Length = 108
Score = 101 bits (254), Expect = 1e-25
Identities = 45/68 (66%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Query: 2 SYQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSG 61
+YQLYRNTTLGN+LQESLDELIQ ITP LA++VLLQFDK+IN AL +V++R+ F+ G
Sbjct: 1 AYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR-G 59
Query: 62 KLNTFLFI 69
LNT+ F
Sbjct: 60 SLNTYRFC 67
Score = 80.3 bits (198), Expect = 5e-18
Identities = 35/52 (67%), Positives = 44/52 (84%), Gaps = 1/52 (1%)
Query: 1482 NNKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACD 1533
+V++R+ F+ G LNTYRFCDNVWTFVL DVEFREV E+ +V+K+KIVACD
Sbjct: 48 AQRVRNRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACD 98
>1nh2_D Transcription initiation factor IIA small chain;
transcription/DNA; HET: 5IU; 1.90A {Saccharomyces
cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Length = 121
Score = 98.6 bits (245), Expect = 4e-24
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGK 62
Y+LYR +T+GN+L ++LD LI G I +LAM+VL FDK + L +S+LT K G
Sbjct: 6 YELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVK-GN 64
Query: 63 LNTFLFI 69
L+T+ F
Sbjct: 65 LDTYGFC 71
Score = 69.3 bits (169), Expect = 5e-14
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 15/66 (22%)
Query: 1482 NNKVKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFR--------------EVAEIARVNKL 1527
+ +S+LT K G L+TY FCD+VWTF++ + + + + V+KL
Sbjct: 52 KDNTQSKLTVK-GNLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKL 110
Query: 1528 KIVACD 1533
+IVAC+
Sbjct: 111 RIVACN 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.5 bits (208), Expect = 3e-16
Identities = 111/716 (15%), Positives = 216/716 (30%), Gaps = 205/716 (28%)
Query: 484 MKLDLSAAAHGKQNLV---LSTFTNSRNICK--LKYEKPVFNEEGYMNIFRSH------- 531
M + + ++++ F ++ + CK K + ++E +I S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 532 ----ALLNNQ----QKY---ALRELYKW-RDRIA-RDKDESTGYVLPNHMLLQMAQSIPR 578
LL+ Q QK+ LR YK+ I + S + ++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL------ 119
Query: 579 DIQGIFACCNPVPQTVKEHVLDIHAII-LKARLQSLTKPVEKLQPSLDGMKK--KQ--QQ 633
N K +V + + L+ L L +P + + +DG+ K
Sbjct: 120 --------YNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNV--LIDGVLGSGKTWVAL 168
Query: 634 QVSPPHDSMDCLNYKGLPPVFPNNII---CAPSNTHLSSYDPQDKKIAQIGLFFEDKMKI 690
V CL+YK + I N+ + + K + QI + +
Sbjct: 169 DV--------CLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 691 GSNKYQKIKLKTSRFETPYQRFLKSKEYAKA--IQEKV-DKENAEQKKIDALTPQVKTEP 747
SN IKL+ + +R LKSK Y + V + + +A K
Sbjct: 220 SSN----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-----WNAFNLSCKI-- 268
Query: 748 EENVKITQEPVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEESNEK 807
+ T+ V + + + + L +E + K + + E
Sbjct: 269 ---LLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLL-KYLDCRPQDLPREV 322
Query: 808 TKRHK-----IKSEPKENDSSKGKSGGTISTVDFSK-VNYNKYMAKPDTKI--L-PDPYY 858
+ I ++ ++T D K VN +K ++ + L P Y
Sbjct: 323 LTTNPRRLSIIAESIRDG----------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 859 EYLDELRDSSLPIVFDNGAW-----CCRVGWASCEK--PNLIFKNLIAKPRKERGKKDGE 911
+ D L VF A + W K ++ L E+ K+
Sbjct: 373 KMFDRL------SVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKES- 424
Query: 912 TQVGNDISNIEAVRFQLKTQFD------KNVVTHYDIQE----------QIFDYAFSHLS 955
+I ++ +LK + + +++V HY+I + + Y +SH+
Sbjct: 425 ------TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI- 477
Query: 956 INTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSVCYGIDSLFSYQY-N-GWEGQ 1013
+H L +LF + + + Q
Sbjct: 478 ------GHH---------------------LKNIEH-----PERMTLFRMVFLDFRFLEQ 505
Query: 1014 SGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLK-YPSHINSITPS 1072
I ++N L QLK Y +I P
Sbjct: 506 K--IRHDSTAWNASGSILN-----------------------TLQQLKFYKPYICDNDPK 540
Query: 1073 RSEELLWDYG-FVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDR 1127
E L+ F+ E+L + +++ ++++++ L +Q R
Sbjct: 541 Y-ERLVNAILDFLPK-IEENL---ICSKY--TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 74.9 bits (183), Expect = 2e-13
Identities = 90/703 (12%), Positives = 180/703 (25%), Gaps = 230/703 (32%)
Query: 639 HDSMDC------LNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMK--I 690
H MD YK + VF + + ++D +D +D K +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFV--------DNFDCKD---------VQDMPKSIL 46
Query: 691 GSNKYQKIKLKTSRFETPYQRF--LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPE 748
+ I + + F L SK+ + +Q+ V E + L +KTE
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFV--EEVLRINYKFLMSPIKTEQR 103
Query: 749 ENVKITQEPVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEESNE-K 807
+ +T M E+R ++ + K V + + + +
Sbjct: 104 QPSMMT---------------RMYIEQRDRLYND-------NQVFAKYNVSRLQPYLKLR 141
Query: 808 TKRHKIKSEPK---ENDSSKGKSGGTISTVDFSKVNYNKYMAKPDTKILPDPYYEYLDEL 864
+++ + GK+ ++A LD
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKT----------------WVA--------------LDVC 171
Query: 865 RDSSLPIVFDNGAWCCRVGWAS---CEKPNLIFKNL------IAKPRKERGKKDGETQVG 915
+ D + W + C P + + L I R
Sbjct: 172 LSYKVQCKMDFK-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-----HSS 221
Query: 916 NDISNIEAVRFQLKTQF----------------DKNVVTHYDIQ---------EQIFDYA 950
N I +++ +L+ + +++ +Q+ D+
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF- 280
Query: 951 FSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELL-FECYQVPSVCYGIDSLFSYQYNG 1009
LS T ++ + L P+ +SL+ + L +P
Sbjct: 281 ---LSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--------------- 320
Query: 1010 WEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSI 1069
+ P I S + + I
Sbjct: 321 -------------EVLTTNPRRLSIIAESIRDGLA--------TWDNWKHVNCDKLTTII 359
Query: 1070 TPSRSEELLWDYGFVATDYREHLRKWLDAEFYDSNVVKVQLPYAVPVP---------NLT 1120
S +L +YR+ +D V P + +P ++
Sbjct: 360 --ESSLNVLEPA-----EYRKM---------FDRLSV---FPPSAHIPTILLSLIWFDVI 400
Query: 1121 TEQQKDRRKELAKK-LVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFK 1179
+L K LVE K+ + +L ++L L H + +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPS--IYLELKVKLENEYAL----HRSIVDHYN 454
Query: 1180 SMGINNIQDLNK-SINQLQQKIEKTKAKIIAY-----NNGEDLTEEPK---------AKL 1224
I D + L Q I + + E +T K+
Sbjct: 455 ---IPKTFDSDDLIPPYLDQYF----YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 1225 SKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAK 1267
+ + L + K + YI D ++ +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 74.9 bits (183), Expect = 3e-13
Identities = 108/743 (14%), Positives = 209/743 (28%), Gaps = 255/743 (34%)
Query: 1171 HSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKE--- 1227
H H F+ Q K I + + + + +D+ + PK+ LSKE
Sbjct: 2 HHHHHMDFE---TGEHQYQYKDI------LSVFEDAFVDNFDCKDVQDMPKSILSKEEID 52
Query: 1228 --IAVP--ESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISEL 1283
I S W + +K++ + + E+
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMV--------------------------QKFVEEV 86
Query: 1284 ARKEKRDDDFGMRDEDW--DVYKVINKD-AGDTDS-EEEQERLIELEEILRQHD----PE 1335
R + + K + + T E+++RL ++ +++
Sbjct: 87 LRI----------NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 1336 FTSLNQE-QELSPKEANQLHIGVERM--CGPECLFQPSMLGSIQAGISETLNFVLNSYPQ 1392
+ L Q EL P + ++ ++ + G + L+ V SY
Sbjct: 137 YLKLRQALLELRPAK----NVLIDGVLGSGKTWV---------------ALD-VCLSYK- 175
Query: 1393 HIAQSLANNIF-VTGSLCQLPGFV-ERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQ 1450
+ + IF + C P V E L K + +
Sbjct: 176 -VQCKMDFKIFWLNLKNCNSPETVLEMLQK-------LLYQIDPNWTSRSD-------HS 220
Query: 1451 FSLSENFHDFAVTQSDYQEKGGEFFRVHPCSNNKVKSRLTFKSGKLNTYRFC----DNVW 1506
++ H Q + + P Y C NV
Sbjct: 221 SNIKLRIHSI-------QAELRRLLKSKP-------------------YENCLLVLLNVQ 254
Query: 1507 -------------TFVLTDVEFREVAEIARVNKLKIVACDELSKTLDVLVQNAYKSIV-K 1552
+ T F++V + ++ D S TL + KS++ K
Sbjct: 255 NAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLK 309
Query: 1553 CTKT-AQSFPSTHENSLLIASPNYISGVAG---------------TSDKVMTLVDSLLKT 1596
Q P +L +P +S +A DK+ T+++S L
Sbjct: 310 YLDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 1597 QNISKSMSKLYLEGQKD--ILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWN 1654
K++ + + I +L ++ W
Sbjct: 366 LE-PAEYRKMF----DRLSVFPP---------SAHI-------PTILL----SLI---WF 397
Query: 1655 KNAKASNVWQEVHDNKKKSANWFMLNK----GAVEIERPQLQFKVKVDNSYE------QL 1704
+ S+V V+ K S ++ K + I L+ KVK++N Y
Sbjct: 398 -DVIKSDVMVVVNKLHKYS----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 1705 FEPKLKEKPNALKPLAI-------------LLEKYDAIESFCHPYEYELDLYVPKEDFL- 1750
+ + L P + +E + + F + LD FL
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDF-----RFLE 504
Query: 1751 -KCEEPKQAL--PLSDTPLMM--------ITEPEQV-TQLVSELKQQQEIAIDLEYHNYR 1798
K A S + I + + +LV+ + + +E +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DFLPKIEENLIC 561
Query: 1799 SYQGYTCLMQIS-TRDKDYIVDT 1820
S YT L++I+ + + I +
Sbjct: 562 S--KYTDLLRIALMAEDEAIFEE 582
Score = 73.3 bits (179), Expect = 7e-13
Identities = 114/758 (15%), Positives = 228/758 (30%), Gaps = 233/758 (30%)
Query: 79 EIPKSDEANKELSKTLDVLVQNAYKSIVKCTKTAQSFP----STHENSLLIASPNYISGV 134
E + K++ L V A+ C K Q P S E +I S + +SG
Sbjct: 10 ETGEHQYQYKDI---LSVFED-AFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 135 AGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTKTP 194
+ L +LL Q + M + ++E ++L L+ I T + P
Sbjct: 65 -------LRLFWTLLSKQ---EEMVQKFVE---EVLRINYKFLMSPIKTE------QRQP 105
Query: 195 SVLPSQPKIVKES--WNKNAKAS--NVW--QEVHDNKK-----KSANWF----MLNKG-- 237
S + ++ I + +N N + NV Q ++ + A +L G
Sbjct: 106 S-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 238 --AVEI---ERPQLQFKVKV-------DNSYEQLFEPKLKEKPNALKPLAILLEKYDAIE 285
A+++ + Q + K+ NS E + E K + I+
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 286 SFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAI 345
H + EL + + + C L L + V K
Sbjct: 225 LRIHSIQAELRRLLKSKPYENC-----LLVLLN---------------VQNAK------- 257
Query: 346 DLEYHNYRSYQGYTCLMQISTRDK---DYIVDTLKLREDLEVLNEVLTDKNIVKVFHGAD 402
N C + ++TR K D++ L+ + LT + +
Sbjct: 258 AWNAFNLS------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---- 307
Query: 403 SDIKWL-QKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRP 461
+K+L + L + P +A ++ T+ +W+H
Sbjct: 308 --LKYLDCRPQDL-------PREVLTTNPRRLSIIAESIRDGLA-----TWD--NWKH-- 349
Query: 462 LPEPAIQYARTDTHYLLYVYDCMKLD---------LSAAAHGKQNLVLSTFTNSRNI--- 509
+C KL L A + K LS F S +I
Sbjct: 350 -------------------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 510 --CKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNH 567
+ ++ + +N ++L+ + EST +P
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVE------------------KQPKEST-ISIP-S 430
Query: 568 MLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGM 627
+ L++ + + +H I V+
Sbjct: 431 IYLELKVKLENEYA-------------------LHRSI-----------VDHYNI----P 456
Query: 628 KKKQQQQVSPPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDK 687
K + PP+ ++ G HL + + ++ +F + +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGH---------------HLKNIEHPERMTLFRMVFLDFR 501
Query: 688 -MKIGSNKYQKIKLKTSRFETPYQR---FLKSKEYAKAIQEKVDKENAEQKKIDALTPQV 743
++ QKI+ ++ + + K Y I D + ++ ++A+ +
Sbjct: 502 FLE------QKIRHDSTAWNASGSILNTLQQLKFYKPYIC---DNDPKYERLVNAILDFL 552
Query: 744 KTEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILR 781
EEN+ ++ +L+ E + +E K++ R
Sbjct: 553 PK-IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 65.3 bits (158), Expect = 2e-10
Identities = 87/626 (13%), Positives = 186/626 (29%), Gaps = 173/626 (27%)
Query: 19 LDELIQYGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTFLFIVTKMSDTNQ 78
L+ ++ +L+ + L S +K+ S ++ ++ + NQ
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 79 EIPKSD----EANKELSKTLDVLVQNAY----------KSIVKCTKTAQSFPSTHENSLL 124
K + + +L + L L K+ V S+ +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFK 183
Query: 125 IASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKL-LESINT 183
I +++ + T+++ L Q + + + +N KL + SI
Sbjct: 184 IF---WLN--LKNCNSPETVLEML---QKLLYQIDPNWTSRSD---HSSNIKLRIHSIQA 232
Query: 184 RI-DVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFML----NKGA 238
+ ++ + L ++ N W + K +L K
Sbjct: 233 ELRRLLKSKPYENCL----LVLLNVQNA-----KAW-NAFNLSCK-----ILLTTRFKQV 277
Query: 239 VEIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLY 298
+ + +D+ L ++K LL KY L
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKS----------LLLKY---------------LD 312
Query: 299 VPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQG- 357
+D P++ L + P + +++E + D N++
Sbjct: 313 CRPQD-----LPREVLTTN--PRRL--------SIIAESIRDGLATWD----NWKHVNCD 353
Query: 358 -YTCLMQISTRDKDYIVDTLK---LR---EDLEVLNEVLTDKNI-VKVFHGADSDIKWLQ 409
T +++ S ++ L+ R + L V +I + + W
Sbjct: 354 KLTTIIESS-------LNVLEPAEYRKMFDRLSVFPP---SAHIPTILL-----SLIWFD 398
Query: 410 KDFGLYVVGMFDTHQACKFLPM--PRQSLAYLLKHYCD--VDSDKTFQLFDWRHRPLPEP 465
V + L P++S + Y + V + + L HR + +
Sbjct: 399 VIK--SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSIVD- 451
Query: 466 AIQYART---DTHYLL------YVYDCMKLDLSAAAHGKQNLVLST-FTNSRNI-CKLKY 514
Y D+ L+ Y Y + L H ++ + F + R + K+++
Sbjct: 452 --HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 515 EKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYV------LPNHM 568
+ +N G +LN L++L ++ I + + V LP
Sbjct: 510 DSTAWNASGS--------ILN-----TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 569 ----------LLQMAQSIPRDIQGIF 584
LL++A + IF
Sbjct: 557 ENLICSKYTDLLRIALMAEDE--AIF 580
Score = 56.4 bits (135), Expect = 1e-07
Identities = 98/691 (14%), Positives = 202/691 (29%), Gaps = 221/691 (31%)
Query: 1133 KKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGINNIQDLNKS 1192
K ++ + E+ VD+ + +++ ++ + I++I +
Sbjct: 19 KDILSVF----EDAFVDN-------FDCKDVQDMP-------KSILSKEEIDHIIMSKDA 60
Query: 1193 INQLQQKIE--KTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIETKKKRAY 1250
++ + +K + + E++ L I + + + ++ R Y
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 1251 ----IIDKKNARKQRRQDLAKRRTAAAQER---------MR------LISELARKEKRDD 1291
+ K N R Q K R A + R + + ++ K
Sbjct: 121 NDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 1292 --DFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKE 1349
DF + W +N + +S E L L+++L Q DP +TS +
Sbjct: 179 KMDFKIF---W-----LN--LKNCNSPET--VLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 1350 ANQLHIGVERMC----GPECLFQPSMLGSIQ-AGISETLNF----VLNSYPQHIAQSLAN 1400
+ + + R+ CL +L ++Q A N +L + + + L+
Sbjct: 227 IHSIQAELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 1401 NIFVTGSLCQL-PGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHD 1459
SL K LL + R L
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLK-------------------YLDCRPQDLPR---- 320
Query: 1460 FAVTQSDYQEKGGEFFRVHPCSNNKVKSRLTFKSGKLNTYRFCDNVWTFVLTDV--EFRE 1517
E +P L+ + R+
Sbjct: 321 -------------EVLTTNP----------------------------RRLSIIAESIRD 339
Query: 1518 VAEIARVNKLKIVACDELSKT----LDVL----VQNAYKSIVKCTKTAQSFPSTHENSLL 1569
+A + K V CD+L+ L+VL + + + FP ++ +
Sbjct: 340 --GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-------VFP---PSAHI 387
Query: 1570 IASPNYISGV---AGTSDKVMTLVD-----SLLKTQNISKSMS--KLYLE--GQKDILTE 1617
P + + VM +V+ SL++ Q ++S +YLE + +
Sbjct: 388 ---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 1618 ANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWF 1677
+ +++ N + ++++ + D ++
Sbjct: 445 LHRSIVDHYN---------------------IPKTFDSDDLIPPYL----DQY-----FY 474
Query: 1678 ------MLNKGAVEIERPQLQFKVKVDNSYEQLFEPKLK------EKPNALKPLAILLEK 1725
+ K ER L V +D + E K++ ++ L+
Sbjct: 475 SHIGHHL--KNIEHPERMTLFRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 1726 Y-DAIESFCHPYEYELDLYVPKEDFL-KCEE 1754
Y I YE ++ DFL K EE
Sbjct: 530 YKPYICDNDPKYERLVNAI---LDFLPKIEE 557
Score = 42.1 bits (98), Expect = 0.002
Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 48/207 (23%)
Query: 1794 YHNYRSYQGYTCLMQISTRD-----KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADS 1848
+H++ ++ T Q +D +D VD ++ ++ +L+ + I + D+
Sbjct: 3 HHHHMDFE--TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 1849 DIK-----WLQKDFGLYVVGMF--DTHQ------ACKFLPMPRQ-SLAYLLKHYCDVDSD 1894
W +V F + + RQ S+ + D
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ---RD 117
Query: 1895 KTF---QLFDWRHRPLPEP------AIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVL 1945
+ + Q+F + +P A+ R + L+ + GK + L
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---GV------LGSGKTWVAL 168
Query: 1946 STFTNSRNICKLKYEKPVFNEEGYMNI 1972
+ + CK+ ++ +F ++N+
Sbjct: 169 DVCLSYKVQCKMDFK--IF----WLNL 189
Score = 41.0 bits (95), Expect = 0.005
Identities = 54/330 (16%), Positives = 82/330 (24%), Gaps = 125/330 (37%)
Query: 1734 HPYEYELDLYVPKEDFLK---C----EEPKQALPLS--DTPLMMITEPEQVTQLVSELKQ 1784
H Y+Y+ L V ++ F+ C + PK L D +M +L L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 1785 QQEIAI-----DLEYHNY---------------RSYQGYTCLMQISTRDK---------D 1815
+QE + ++ NY + Y I RD+
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-----IEQRDRLYNDNQVFAK 128
Query: 1816 YIV----DTLKLREDLE-------------------VL-NEVLTDKNIVKVFHGADSDIK 1851
Y V LKLR+ L + +V + D I
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM---DFKIF 185
Query: 1852 WLQKDFG--------------LYVVGMFDTHQACKFLPMPRQS-------LAYLLKH--Y 1888
WL + L + + L LLK Y
Sbjct: 186 WL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 1889 C-------DVDSDKTFQLFDWR----------------------HRPLPEPAIQYARTDT 1919
+V + K + F+ H L ++ +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 1920 HYLLYVY-DCMKLDLSAAAHGKQNLVLSTF 1948
LL Y DC DL LS
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 2e-11
Identities = 86/545 (15%), Positives = 153/545 (28%), Gaps = 203/545 (37%)
Query: 270 ALKPLAILLEKYDAIE-SFCHPYEYELDLYVP----KEDFLKC-EEPKQALPLSDTP--- 320
+ +PL + + ++E P + +E F K EP + D P
Sbjct: 5 STRPLTL---SHGSLEHVLLVPT----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 321 -------LMMIT---EPEQVTQ------------------------LVSELKQQQEIAID 346
L ++ EP +V Q L ++L Q+ + +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 347 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDK-NIVKVFHGADSDI 405
++Y T + L V +V +F G +
Sbjct: 118 KTKELIKNY--ITARIMAKRPFDKKSNSAL--------FRAVGEGNAQLVAIFGGQGNTD 167
Query: 406 KW---LQKDFGLYVVGMFDTHQAC--KFLPMPRQSLAYLLKHYCDVDS--DKTFQLFDWR 458
+ L+ LY T+ + ++L+ L++ D + + + +W
Sbjct: 168 DYFEELRD---LY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 459 HRPLPEPAIQYARTDTHYLL----------------YVYDCMKLDLS----------AAA 492
P P D YLL YV L + A
Sbjct: 220 ENPSNTP-------DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 493 HGKQNLVLST-----------FTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYA 541
H Q LV + F + R + +F ++ R + Y
Sbjct: 273 HS-QGLVTAVAIAETDSWESFFVSVRKAITV-----LF----FIG-VRC------YEAYP 315
Query: 542 LRELYKWRDRIARDKDESTGYVLPNHML----LQMAQSIPRDIQGIFACCNPVPQTVKEH 597
L I D E+ +P+ ML L Q + + +P +
Sbjct: 316 NTSL---PPSILEDSLEN-NEGVPSPMLSISNLTQEQVQDY----VNKTNSHLPAG--KQ 365
Query: 598 VLDIHAIILK--AR----------LQSLTKPVEKL--QPSLDGMKKKQQQQVSPPHDSMD 643
V I L A+ L L + K LD Q ++ P
Sbjct: 366 V----EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD------QSRI--PFSER- 412
Query: 644 CLNYKGLPPVF-----PNNIICAPSNTHL--SSYDPQDKKIAQIGLFFEDK-MKI----- 690
F P + +P ++HL + D +K + + + F K ++I
Sbjct: 413 -------KLKFSNRFLP---VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 691 --GSN 693
GS+
Sbjct: 463 FDGSD 467
Score = 67.0 bits (163), Expect = 6e-11
Identities = 107/635 (16%), Positives = 180/635 (28%), Gaps = 250/635 (39%)
Query: 1426 RPFQ-SH----FSVSLAENPELDAWSGARQFSLSENFHDFAVTQSDYQEKGGEFFRVHPC 1480
RP SH + + P ++ A Q L E F+ ++ E P
Sbjct: 7 RPLTLSHGSLEHVLLV---PT-ASFFIASQ--LQEQFNKILPEPTEGFAADDE-----PT 55
Query: 1481 SNNKVKSR-LTF-----KSGKLNTYRFCDNVWTFVLTDVE--FREVAEI-ARVNKLKIVA 1531
+ ++ + L + + K+ + D V LT+ E + E +I A KL
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQF---DQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 1532 CDELSKTLDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVA---------GT 1582
L KT +++ +N + + F ++L A G A G
Sbjct: 113 DTTLVKTKELI-KNYITA---RIMAKRPFDKKSNSALFRAVG---EGNAQLVAIFGGQGN 165
Query: 1583 SDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTR----------IDV 1632
+D + L + D++ + + L E I T +++
Sbjct: 166 TD---DYFEELRDLYQTYHVLVG-------DLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 1633 MAGTKTPSVLP----------SQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFM---- 1678
+ + PS P S P I V Q H ++
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIG------------VIQLAH---------YVVTAK 254
Query: 1679 ---LNKGAVEIERPQLQ------------FKVKVDNSYEQLFEPKLKEKPNALKPLAILL 1723
G + R L+ + +S+E F + K + +L
Sbjct: 255 LLGFTPGEL---RSYLKGATGHSQGLVTAVAIAETDSWESFFV-------SVRKAITVL- 303
Query: 1724 EKYDAIESF-----CH---PYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMIT--EPE 1773
F C+ P + +P E + +P +P++ I+ E
Sbjct: 304 --------FFIGVRCYEAYP-----NTSLPPSILEDSLENNEGVP---SPMLSISNLTQE 347
Query: 1774 QVTQLV----SELKQQQEIAIDLEYHN-YRSY--QGYTCLMQISTRDKDYIVDTLKLRED 1826
QV V S L +++ I L N ++ G +
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISL--VNGAKNLVVSGPP--------------------QS 385
Query: 1827 LEVLNEVLTDKNIVKVFHGAD-SDIKWLQK--DFGLYVVGMFDTHQACKFLPM--PRQSL 1881
L LN L K G D S I + ++ F +FLP+ P
Sbjct: 386 LYGLNLTLRK---AKAPSGLDQSRIPFSERKLKFSN------------RFLPVASP---- 426
Query: 1882 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQ 1941
F H L PA L D +K ++S A
Sbjct: 427 ------------------F---HSHLLVPASD---------LINKDLVKNNVSFNAK--- 453
Query: 1942 NL---VLSTFTNS----------RNICKLKYEKPV 1963
++ V TF S I PV
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 66.6 bits (162), Expect = 9e-11
Identities = 108/631 (17%), Positives = 177/631 (28%), Gaps = 223/631 (35%)
Query: 1048 FSVIHHLH-KLLQLK------YPSHINSIT----PSRSEELLWDY-GFVA--------TD 1087
V QL+ P P+ EL+ + G+V+
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 1088 YREHLRKWLDAEF---Y----DSNVVKVQLPYAVPVPNLTTEQQKDRRKELAK------- 1133
+ + L L EF Y D + + +L T K KEL K
Sbjct: 80 FDQVLNLCLT-EFENCYLEGNDIHALAAKLL-----QENDTTLVK--TKELIKNYITARI 131
Query: 1134 ------------KLVEMNAKKREERLV-------DDERHLNELLELREIVELTPSDHSHA 1174
L + +LV + + + EL +L +
Sbjct: 132 MAKRPFDKKSNSALFR-AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT----------- 179
Query: 1175 REAFKSMGINNIQDL-NKSINQLQQKIEKTKAKIIAYNNGEDLT---EEPKAK------L 1224
+ + + DL S L + I T + G ++ E P L
Sbjct: 180 ---YHVL----VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 1225 SKEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELA 1284
S I+ P LI + Y++ K +L A L++ +A
Sbjct: 233 SIPISCP---------LIGVIQLAHYVVTAKLL-GFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 1285 RKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEI-LRQHD--PEFTSLNQ 1341
D W+ + V + A + L I +R ++ P +
Sbjct: 283 --------IAETD-SWESFFVSVRKA-----------ITVLFFIGVRCYEAYPNTS---- 318
Query: 1342 EQELSPKEANQLHIGVERMCGPECLFQPS-MLG-------SIQAGISETLNFVLNSY-P- 1391
L P L +E G PS ML +Q +++T NS+ P
Sbjct: 319 ---LPPS---ILEDSLENNEG-----VPSPMLSISNLTQEQVQDYVNKT-----NSHLPA 362
Query: 1392 -QHIAQSLAN---NIFVTGSLCQLPGFVERLNKDLLENRPFQSH--FSVSLAENPELDAW 1445
+ + SL N N+ V+G L G L K + QS FS +
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS---ERKLKFSN- 418
Query: 1446 SGARQFSL--SENFHDFAVTQSDYQEKGGEFFRVHPCSNNKVKSRLTFKSGKLNTYRFCD 1503
+F L + FH S +
Sbjct: 419 ----RF-LPVASPFH------SHLLVPASD------------------------------ 437
Query: 1504 NVWTFVLTDVEFREVAEIARVNKLKI-VACDELSKTLDVLVQNAYKSIVKCT-------K 1555
+ D+ V+ ++I V L VL + + IV C +
Sbjct: 438 ----LINKDLVKNNVS--FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 1556 TAQSFPSTHENSLLIASPNYISGVAGTSDKV 1586
T F +TH +L P SG+ + +
Sbjct: 492 TTTQFKATH---ILDFGPGGASGLGVLTHRN 519
Score = 61.6 bits (149), Expect = 3e-09
Identities = 90/583 (15%), Positives = 166/583 (28%), Gaps = 212/583 (36%)
Query: 14 TLQESLDELIQ-YGTITPT-LAMKVLLQF-----DKSINGALPSKVKSRLT-FKSGKLNT 65
L E + TP L K L + + S G + LT F++
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGK-FLGYVSSLVEPSKVGQFDQVLNLCLTEFEN----C 94
Query: 66 FL-------FIVTKMSDTNQEIPKSDEANKELSKTLDVLVQNAYKSIVKCTKTAQSFPST 118
+L + + + + K+ E L++N + + F
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKE-----------LIKNYITA---RIMAKRPFDKK 140
Query: 119 HENSLLIASPNYISGVA---------GTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDI 169
++L A G A G +D + L + D+
Sbjct: 141 SNSALFRAVG---EGNAQLVAIFGGQGNTD---DYFEELRDLYQTYHVLVG-------DL 187
Query: 170 LTEANDKLLESINTR----------IDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQ 219
+ + + L E I T ++++ + PS P +
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD------------------ 229
Query: 220 EVHDNKKKSANWFMLNKGAVEIERP-----QL-QFKV---KVDNSYEQLFEPKLKEKPNA 270
++L ++ I P QL + V + + +L LK
Sbjct: 230 ------------YLL---SIPISCPLIGVIQLAHYVVTAKLLGFTPGELR-SYLKGATGH 273
Query: 271 LKPL--AILLEKYDAIESFCHPYEYELDLYVPKEDF---LKCEEPKQALPLSDTPLMMIT 325
+ L A+ + + D+ ESF + F ++C +A P + P ++
Sbjct: 274 SQGLVTAVAIAETDSWESF-----FVSVRKAITVLFFIGVRC---YEAYPNTSLPPSILE 325
Query: 326 EPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVL 385
+ + +G M +S + + ++++ +
Sbjct: 326 DSLENN------------------------EGVPSPM-LSISN----LTQEQVQDYVNKT 356
Query: 386 NEVL-TDKNI-VKVFHGADSDIKWLQKDFGLYVV-GMFDTHQACKFLPMPRQSLA----Y 438
N L K + + + +GA + VV G P QSL
Sbjct: 357 NSHLPAGKQVEISLVNGAKN-----------LVVSG-------------PPQSLYGLNLT 392
Query: 439 LLKHYCDVDSDKTFQLFDWR-----HRPLP--EPAIQYARTDTHYLLYVYDCMKLDLSAA 491
L K D++ F R +R LP P + +H L+ D + DL
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP---F---HSHLLVPASDLINKDLVKN 446
Query: 492 A---HGKQNL---VLSTFTNS----------RNICKLKYEKPV 518
+ K + V TF S I PV
Sbjct: 447 NVSFNAKD-IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 55.8 bits (134), Expect = 2e-07
Identities = 48/312 (15%), Positives = 86/312 (27%), Gaps = 110/312 (35%)
Query: 1715 ALKPLAILLEKYDAIE-SFCHPYEYELDLYVP----KEDFLKC-EEPKQALPLSDTP--- 1765
+ +PL + + ++E P + +E F K EP + D P
Sbjct: 5 STRPLTL---SHGSLEHVLLVPT----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 1766 -------LMMIT---EPEQVTQ------------------------LVSELKQQQEIAID 1791
L ++ EP +V Q L ++L Q+ + +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 1792 LEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDK-NIVKVFHGADSDI 1850
++Y T + L V +V +F G +
Sbjct: 118 KTKELIKNY--ITARIMAKRPFDKKSNSAL--------FRAVGEGNAQLVAIFGGQGNTD 167
Query: 1851 KW---LQKDFGLYVVGMFDTHQAC--KFLPMPRQSLAYLLKHYCDVDS--DKTFQLFDWR 1903
+ L+ LY T+ + ++L+ L++ D + + + +W
Sbjct: 168 DYFEELRD---LY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 1904 HRPLPEPAIQYARTDTHYLL----------------YVYDCMKLDLS----------AAA 1937
P P D YLL YV L + A
Sbjct: 220 ENPSNTP-------DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 1938 HGKQNLVLSTFT 1949
H Q LV +
Sbjct: 273 HS-QGLVTAVAI 283
Score = 55.4 bits (133), Expect = 2e-07
Identities = 108/634 (17%), Positives = 182/634 (28%), Gaps = 223/634 (35%)
Query: 853 LPDPYYEYLDELRD---SSLPIVFDNGAWCCRVGWASCEKPN----LI--FKNLIAKPRK 903
+P + +L++ LP + G+A+ ++P L+ F ++
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTE--------GFAADDEPTTPAELVGKFLGYVSS-LV 72
Query: 904 ERGKKDGETQV--------------GNDISNIEAVRFQLKTQFDKNVVTHYDIQEQIFDY 949
E K QV GNDI A+ +L + D +V ++ I +Y
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLVKTKEL---IKNY 126
Query: 950 AFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLFECYQVPSV-CYGIDSLFSYQYN 1008
+ + PF + S LF + I F
Sbjct: 127 ITARIMAK------------RPFDKKSNSA------LFRAVGEGNAQLVAI---F----- 160
Query: 1009 GWEGQSGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINS 1068
G GQ G F + L++ Y +
Sbjct: 161 G--GQ-GNTDDY---------------------------FEELRDLYQT----YHVLVGD 186
Query: 1069 ITPSRSEELLWDYGFVATDYREH------LRKWL-------DAEFYDSNVVKVQLP---- 1111
+ S E L + D + + +WL D ++ S + + P
Sbjct: 187 LI-KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS--IPISCPLIGV 243
Query: 1112 -----YAVP--VPNLTTEQQKDRRKEL---AKKLVE---MNAKKREERLVDDERHLNELL 1158
Y V + T + + K ++ LV + E R +L
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 1159 --------ELREIVELTPS---DHSHAREAFKS-MGINNIQDLNKSINQLQQKIEKTKAK 1206
E L PS D E S M +I +L + Q+Q + KT +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--LSISNLTQE--QVQDYVNKTNSH 359
Query: 1207 I-------IAYNNGEDLTEEPKAKLSKEIAV----PESEAEFKAWLIETKKKRAYIIDKK 1255
+ I+ NG K V P+S L +K +A
Sbjct: 360 LPAGKQVEISLVNG------AKN------LVVSGPPQSLYGLNLTL---RKAKA-----P 399
Query: 1256 NARKQRRQDLAKRRTAAAQERMR-L-ISE------LAR-KEKRDDDFGMRDEDWD----- 1301
+ Q R ++R+ R L ++ L + + D + ++
Sbjct: 400 SGLDQSRIPFSERKLKF---SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 1302 --VYKVINKDAGD--TDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHI-- 1355
VY D D S ER+++ I+R + E K HI
Sbjct: 457 IPVYDT--FDGSDLRVLSGSISERIVDC--IIRLP------VKWETTTQFKA---THILD 503
Query: 1356 -GVERMCGPECLFQPSMLGS----IQAGISETLN 1384
G G L + G+ I AG TL+
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAG---TLD 534
Score = 53.9 bits (129), Expect = 6e-07
Identities = 98/646 (15%), Positives = 191/646 (29%), Gaps = 227/646 (35%)
Query: 1271 AAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILR 1330
A+Q + + L + + F DE +++ K G S E ++ + +++L
Sbjct: 29 IASQLQEQFNKIL---PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 1331 QHDPEFTS--LNQEQELSPKEANQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLN 1388
EF + L N +H +L + +T ++
Sbjct: 86 LCLTEFENCYLEG---------NDIH-----------ALAAKLLQENDTTLVKTKE-LIK 124
Query: 1389 SYPQHIAQSLANNIFVTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSG- 1447
+Y A+ +A RPF + +L G
Sbjct: 125 NYIT--ARIMA-------------------------KRPFDKKSNSALFRA----VGEGN 153
Query: 1448 ARQFSL------SEN-FHDFAVTQSDYQEKGGEFFRVH-----PCSNNKVKSRLTFKSGK 1495
A+ ++ +++ F + Y G+ + + + F G
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG- 212
Query: 1496 LNTYRFCDNVWTFVLT------DVEFREVAEIARVNKLKIVACDELSKTLDVLVQNA-YK 1548
LN W L D ++ + I ++C L ++Q A Y
Sbjct: 213 LNILE-----W---LENPSNTPDKDY--LLSIP-------ISC-----PLIGVIQLAHY- 249
Query: 1549 SIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQNISKSMS-KLY 1607
+V K P + L G + LV ++ I+++ S + +
Sbjct: 250 -VVTA-KLLGFTPGELRSYL-----------KGATGHSQGLVTAVA----IAETDSWESF 292
Query: 1608 LEGQKDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVH 1667
+ +T +L I R + P I+++S +
Sbjct: 293 FVSVRKAIT-----VLFFIGVR-----CYEAYPNTSLPPSILEDSLE------------N 330
Query: 1668 DNKKKSANWFMLNKGAVE-IERPQLQFKVKVDNSYEQLFEPK-----LKEKPN------- 1714
+ S ML ++ + + Q+Q V NS+ L K L
Sbjct: 331 NEGVPSP---ML---SISNLTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAKNLVVSGP 382
Query: 1715 --ALKPLAILLEKYDAIESFCHPYEYELDLY-VPKEDFLKCEEPK---QALPLSD---TP 1765
+L L + L K A LD +P F + + K + LP++ +
Sbjct: 383 PQSLYGLNLTLRKAKA--------PSGLDQSRIP---FSE-RKLKFSNRFLPVASPFHSH 430
Query: 1766 LMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQI---STRD-KDYIVDTL 1821
L+ + L+++ + ++ + + +QI T D D
Sbjct: 431 LL-----VPASDLINKDLVKNNVSFNAKD------------IQIPVYDTFDGSD------ 467
Query: 1822 KLREDLEVLNEVLTDKNIVKVFHGADSDIKW--LQK-------DFG 1858
LR ++E + D I W + DFG
Sbjct: 468 -LRVLSGSISERIVDCIIRLPVK-------WETTTQFKATHILDFG 505
Score = 52.4 bits (125), Expect = 2e-06
Identities = 73/441 (16%), Positives = 142/441 (32%), Gaps = 138/441 (31%)
Query: 12 GNTLQESLDELIQ-YGTITPTLAMKVLLQFDKSINGALPSKVKSRLTFKSGKLNTFLFIV 70
GNT + +EL Y T + ++ ++++ + + + + F G LN ++
Sbjct: 164 GNT-DDYFEELRDLYQTYHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWL- 219
Query: 71 TKMSDTNQEIPKSDE-ANKELSKTLDVLVQNA-YKSIVKCTKTAQSFPSTHENSLLIASP 128
+ P D + +S L ++Q A Y +V K P + L
Sbjct: 220 ----ENPSNTPDKDYLLSIPISCPLIGVIQLAHY--VVTA-KLLGFTPGELRSYL----- 267
Query: 129 NYISGVAGTSDKVMTLVDSLLKTQNISKSMS-KLYLEGQKDILTEANDKLLESINTRIDV 187
G + LV ++ I+++ S + + + +T +L I R
Sbjct: 268 ------KGATGHSQGLVTAVA----IAETDSWESFFVSVRKAIT-----VLFFIGVR--- 309
Query: 188 MAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVE-IERPQL 246
+ P I+++S ++ S ML ++ + + Q+
Sbjct: 310 --CYEAYPNTSLPPSILEDSLE------------NNEGVPSP---ML---SISNLTQEQV 349
Query: 247 QFKVKVDNSYEQLFEPK-----LKEKPN---------ALKPLAILLEKYDAIESFCHPYE 292
Q V NS+ L K L +L L + L K A
Sbjct: 350 QDYVNKTNSH--LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA--------P 399
Query: 293 YELDLY-VPKEDFLKCEEPK---QALPLSD---TPLMMITEPEQVTQLVSELKQQQEIAI 345
LD +P F + + K + LP++ + L+ + L+++ + ++
Sbjct: 400 SGLDQSRIP---FSE-RKLKFSNRFLPVASPFHSHLL-----VPASDLINKDLVKNNVSF 450
Query: 346 DLEYHNYRSYQGYTCLMQI---STRD-KDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGA 401
+ + +QI T D D LR ++E + D I
Sbjct: 451 NAKD------------IQIPVYDTFDGSD-------LRVLSGSISERIVDCIIRLPVK-- 489
Query: 402 DSDIKW--LQK-------DFG 413
W + DFG
Sbjct: 490 -----WETTTQFKATHILDFG 505
Score = 44.3 bits (104), Expect = 5e-04
Identities = 52/298 (17%), Positives = 89/298 (29%), Gaps = 117/298 (39%)
Query: 199 SQPK-IVKESWNKNAKASNVWQE----------------VHDNKKKSANWFMLNKG-AVE 240
SQ + + + + + A +VW V +N F KG +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 241 IERPQLQFKVKVDNS--YEQLFE-------------PK--LKEKPNALKPLAILL-EK-- 280
+ F+ VD E++F+ K L +P A+ L EK
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-QP-ALTLMEKAA 1743
Query: 281 YDAIES---------FC-HPY-EYE--------LDLYVPKEDFLK----------CEEPK 311
++ ++S F H EY + + E ++ P+
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI----ESLVEVVFYRGMTMQVAVPR 1799
Query: 312 QALPLSDTPLMMITEP---------EQVTQLVSELKQQQ----EIAIDLEYHNYRSYQGY 358
L S+ M+ P E + +V + ++ EI NY +
Sbjct: 1800 DELGRSN-YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV------NYNV-EN- 1850
Query: 359 TCLMQISTRDKDYIV--DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGL 414
Q Y+ D L+ + VL + K+ DI LQK L
Sbjct: 1851 ---QQ-------YVAAGDL----RALDTVTNVLNFIKLQKI------DIIELQKSLSL 1888
Score = 44.3 bits (104), Expect = 5e-04
Identities = 52/298 (17%), Positives = 89/298 (29%), Gaps = 117/298 (39%)
Query: 1644 SQPK-IVKESWNKNAKASNVWQE----------------VHDNKKKSANWFMLNKG-AVE 1685
SQ + + + + + A +VW V +N F KG +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 1686 IERPQLQFKVKVDNS--YEQLFE-------------PK--LKEKPNALKPLAILL-EK-- 1725
+ F+ VD E++F+ K L +P A+ L EK
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-QP-ALTLMEKAA 1743
Query: 1726 YDAIES---------FC-HPY-EYE--------LDLYVPKEDFLK----------CEEPK 1756
++ ++S F H EY + + E ++ P+
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI----ESLVEVVFYRGMTMQVAVPR 1799
Query: 1757 QALPLSDTPLMMITEP---------EQVTQLVSELKQQQ----EIAIDLEYHNYRSYQGY 1803
L S+ M+ P E + +V + ++ EI NY +
Sbjct: 1800 DELGRSN-YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV------NYNV-EN- 1850
Query: 1804 TCLMQISTRDKDYIV--DTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGL 1859
Q Y+ D L+ + VL + K+ DI LQK L
Sbjct: 1851 ---QQ-------YVAAGDL----RALDTVTNVLNFIKLQKI------DIIELQKSLSL 1888
Score = 41.2 bits (96), Expect = 0.004
Identities = 40/308 (12%), Positives = 85/308 (27%), Gaps = 90/308 (29%)
Query: 1294 GMRDEDWDVYKVINK--DAGDTDSEEEQERL-IELEEILRQHDPEFTSLNQEQELSPKEA 1350
GM + + K + D ++ + +I+ + T ++
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRAD---NHFKDTYGFSILDIVINNPVNLTIHF-----GGEKG 1681
Query: 1351 NQLHIGVERMCGPECLFQPSMLGSIQA-GISETLNFVLNSY----PQ------HIAQSLA 1399
++ M F+ + G ++ I + +N SY + Q A
Sbjct: 1682 KRIRENYSAMI-----FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-A 1735
Query: 1400 NNIFVTGSLCQLPGFVERLNKDLLENRPFQS------HFSVSLAENPELDAWSGARQFSL 1453
+ + +DL + H SL E L + + S+
Sbjct: 1736 --LTLM-EKAAF--------EDLKSKGLIPADATFAGH---SLGEYAALASLADV--MSI 1779
Query: 1454 SE---------NFHDFAVTQSDYQEKGGEFFRVHPCSNNKVKSRLTFKSGKLNTYRFCDN 1504
AV + E G + + + +V + F
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRD---ELGRSNYGMIAINPGRVAAS------------FSQE 1824
Query: 1505 VWTFVLTDVEFR--EVAEIARVNKL--------KIVACDELSKTLDVL-VQNAYKSIVKC 1553
+V+ V R + EI N + A D ++ L+ + +Q +
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK-----IDI 1879
Query: 1554 TKTAQSFP 1561
+ +S
Sbjct: 1880 IELQKSLS 1887
Score = 33.5 bits (76), Expect = 0.87
Identities = 45/300 (15%), Positives = 87/300 (29%), Gaps = 112/300 (37%)
Query: 543 RELYKWRDRIAR---DK-DESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 598
+LYK + A+ ++ D H SI + NPV T+ H
Sbjct: 1633 MDLYK-TSKAAQDVWNRADN--------HFKDTYGFSILDIVIN-----NPVNLTI--HF 1676
Query: 599 LDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQ--QQVSPPHDSMDCLNYKGLPPVFPN 656
++ ++ + +DG K ++ ++++ S ++
Sbjct: 1677 GGEKGKRIRENYSAMI-----FETIVDGKLKTEKIFKEINEHSTS---YTFRS-----EK 1723
Query: 657 NIICAPSNTH----LSSY-----------DPQDKKIAQIG---------------LFFED 686
++ A T L P D A G + E
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA--GHSLGEYAALASLADVMSIES 1781
Query: 687 KMKI-----------------GSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKE 729
+++ G + Y I + R + S+E + + E+V K
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF-----SQEALQYVVERVGKR 1836
Query: 730 ----------NAE--Q-------KKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVE 770
N E Q + +D +T + + + I + L S E+VE
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL----SLEEVE 1892
Score = 32.7 bits (74), Expect = 1.7
Identities = 40/251 (15%), Positives = 72/251 (28%), Gaps = 79/251 (31%)
Query: 1123 QQKDRRKEL------AKKLVEMNAKKREERLVDDERHLNELL--ELREIVELTPSDHS-- 1172
Q++ +L A+ + A + H + + +IV P + +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWN-RA----------DNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 1173 -------HAREAFKSMGINNIQDLNKSINQLQQKI-EKTKAKIIAYNNGE-DLTE--EPK 1221
RE + +M I D ++ ++I E + + G T+ +P
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP- 1734
Query: 1222 AKLSKEIAVPESEAEFKAWLIETKKKRAYIIDKK----------NARKQRRQDLAKRRTA 1271
A E A F+ K + I A LA +
Sbjct: 1735 ALTLMEKAA------FEDL-----KSKGLIPADATFAGHSLGEYAA-------LA----S 1772
Query: 1272 AAQ------------ERMRLISELA-RKEKRDDDFGMRDED-WDVYKVINKDAGDTDSEE 1317
A R + R E ++GM + V +++A E
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 1318 EQERLIELEEI 1328
+R L EI
Sbjct: 1833 VGKRTGWLVEI 1843
Score = 32.3 bits (73), Expect = 2.3
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 28/107 (26%)
Query: 709 YQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIK---- 764
Y+ + A+ + + D + ++ V P + I K+I+
Sbjct: 1636 YKTS----KAAQDVWNRADNHFKDTYGF-SILDIVINNPVN-LTIHFGGEKGKRIRENYS 1689
Query: 765 --SEEKVEMEKEKRKKILREREE---------EKEE-------QPAM 793
E + K K +KI +E E EK QPA+
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics,
protein structure initiative, center for eukaryot
structural genomics, CESG; 2.10A {Arabidopsis thaliana}
SCOP: c.55.3.5 PDB: 2q3s_A
Length = 206
Score = 63.1 bits (153), Expect = 7e-11
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)
Query: 359 TCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 417
+++STR+ + K D + L K + V + D+ L+++ GL +
Sbjct: 73 LSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIR 132
Query: 418 GMFD-THQACKFLPMPR---QSLAYLLKHYCDVDSDKTFQLF-DWRHRPLPEPAIQYART 472
+ A + L D + + W + PE ++ A
Sbjct: 133 NAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKW-EKAGPEEQLEAAAI 191
Query: 473 DTHYLLYVYDCM 484
+ ++ V+D +
Sbjct: 192 EGWLIVNVWDQL 203
Score = 63.1 bits (153), Expect = 7e-11
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%)
Query: 1804 TCLMQISTRDKDYIVDTLKLREDL-EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVV 1862
+++STR+ + K D + L K + V + D+ L+++ GL +
Sbjct: 73 LSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIR 132
Query: 1863 GMFD-THQACKFLPMPR---QSLAYLLKHYCDVDSDKTFQLF-DWRHRPLPEPAIQYART 1917
+ A + L D + + W + PE ++ A
Sbjct: 133 NAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKW-EKAGPEEQLEAAAI 191
Query: 1918 DTHYLLYVYDCM 1929
+ ++ V+D +
Sbjct: 192 EGWLIVNVWDQL 203
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 56.8 bits (137), Expect = 7e-08
Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 37/234 (15%)
Query: 1122 EQQKDRRKELAKKLVEMNAK-KREERLVDDERHLNELLELREIVELTPSDHSHAREAFKS 1180
+ +++EL + L EM A+ + EE + + ++ +++++L
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ-QQMLDLE------------- 961
Query: 1181 MGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESE-AEFKA 1239
+++ + +LQ + KI + + E+ KL+KE + E ++
Sbjct: 962 ---EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018
Query: 1240 WLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDED 1299
L E ++K + KN + +L R + R L K K + +
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL---EKIKRKLEGE------- 1068
Query: 1300 WDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQL 1353
+ D + +E + + + EL+ L + + E + E + N
Sbjct: 1069 -------SSDLHEQIAELQAQ-IAELKAQLAKKEEELQAALARLEDETSQKNNA 1114
Score = 41.4 bits (97), Expect = 0.004
Identities = 22/176 (12%), Positives = 68/176 (38%), Gaps = 26/176 (14%)
Query: 1186 IQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAE-FKAWLIET 1244
+Q ++ + + +++ +K +A++ E+ +L +E + + + + E
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKEL-------EQKHTQLCEEKNLLQEKLQAETELYAEA 911
Query: 1245 KKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWDVYK 1304
++ R + KK ++ ++ R + +L +E + +++ M D + +
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ-----MLDLEEQL-- 964
Query: 1305 VINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERM 1360
EEE+ +L+ D + + + + + N+L + +
Sbjct: 965 -----------EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Score = 39.0 bits (91), Expect = 0.021
Identities = 34/239 (14%), Positives = 96/239 (40%), Gaps = 6/239 (2%)
Query: 1123 QQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMG 1182
Q KD + K+ + + +E + E L+E ++ ++ A E +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL- 918
Query: 1183 INNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESE-AEFKAWL 1241
Q+L + +++++ +IE+ + + + ++ L +++ E+ + +
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
Query: 1242 IETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDFGMRDEDWD 1301
+ K + D + + L K R + L + LA +E++ +
Sbjct: 979 VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK-- 1036
Query: 1302 VYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQLHIGVERM 1360
++ + + + ++E++ ELE+I R+ + E + L+++ + +L + +
Sbjct: 1037 -HESMISEL-EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Score = 35.2 bits (81), Expect = 0.29
Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 710 QRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKV 769
+ K E++ E + +I+ + + E K+ Q+ + L++ EE+
Sbjct: 912 EEMRVRLAAKKQELEEILHE--MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 770 EMEK--------EKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKEND 821
+K + + K + + E+Q + + EE + + E K +
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
Query: 822 SSKGKS 827
+K K+
Sbjct: 1030 LTKLKN 1035
Score = 34.0 bits (78), Expect = 0.56
Identities = 18/106 (16%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 716 KEYAKAIQEKVDKENAE----QKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEM 771
++ ++++ +K E ++++ LT + E E+ +T+ + + SE +V +
Sbjct: 989 EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048
Query: 772 EKEKR-----KKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHK 812
+KE++ +KI R+ E E + + E + + +
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094
Score = 33.3 bits (76), Expect = 0.95
Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 25/161 (15%)
Query: 685 EDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAE--------QKKI 736
E+K K + K + S E ++ KS++ + I+ K++ E+++ Q +I
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 737 DALTPQVKTEPEENVKITQE--------PVVLKQIKS--------EEKVEMEKEKRKKIL 780
L Q+ + EE LK+I+ +E +E EK R K
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Query: 781 REREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKEND 821
+++ + EE A+K ++E ++ + + ++D
Sbjct: 1144 KQKRDLSEELEALKT-ELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 32.5 bits (74), Expect = 1.7
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 716 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVL-KQIKSEEKVEMEKE 774
+E + Q+ ++ Q+++ L Q++ E K+ E V +IK E + E
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 775 KRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKEND 821
+ L + + EE+ + + + EE + + K K E ++
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 47.1 bits (111), Expect = 1e-05
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 23/90 (25%)
Query: 745 TEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKP--- 801
+ + +TQEP E + +E+++K L+E + + + K +K
Sbjct: 75 AQADR---LTQEP---------ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
Query: 802 -----EESNEKTKRHKIKSEP---KENDSS 823
E EK K + ++ ++ D+
Sbjct: 123 WNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 42.8 bits (100), Expect = 3e-04
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 37/112 (33%)
Query: 1228 IAVPE---SEAE-FKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISEL 1283
IA + E E + W R+++R+ L + A+ +
Sbjct: 74 IAQADRLTQEPESIRKW-----------------REEQRKRLQELDAASKVMEQEWREK- 115
Query: 1284 ARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPE 1335
A+K+ E+W + ++ + + R+ + + +Q D +
Sbjct: 116 AKKDL---------EEW--NQRQSEQV---EKNKINNRIAD-KAFYQQPDAD 152
Score = 36.7 bits (84), Expect = 0.034
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 20/73 (27%)
Query: 716 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEK 775
+E K +QE + A + + K + EE + E + EK
Sbjct: 92 EEQRKRLQEL---DAASKVMEQEWREKAKKDLEEWNQRQSE---------------QVEK 133
Query: 776 RKKILREREEEKE 788
K R +K
Sbjct: 134 NKI--NNRIADKA 144
Score = 35.9 bits (82), Expect = 0.060
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 20/83 (24%)
Query: 1272 AAQERMRLISELARK--EKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEIL 1329
A +R+ E RK E++ D + E E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDA------------------ASKVMEQEWREKA 116
Query: 1330 RQHDPEFTSLNQEQELSPKEANQ 1352
++ E+ EQ K N+
Sbjct: 117 KKDLEEWNQRQSEQVEKNKINNR 139
Score = 34.7 bits (79), Expect = 0.18
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 763 IKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEESNEK-----TKRH-----K 812
I +++ E E +K E+ + +E A K+ ++ E +K +R K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 813 IKSEPKEND 821
K + D
Sbjct: 134 NKINNRIAD 142
Score = 32.1 bits (72), Expect = 1.4
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 35/107 (32%)
Query: 1124 QKDRRK---ELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKS 1180
Q DR E +K E K+ +E D E RE A++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQEL---DAASKVMEQEWRE----------KAKK---- 118
Query: 1181 MGINNIQDLNKSINQLQQKIEKTKAKIIAYNNG---EDLTEEPKAKL 1224
++++ N+ + +++EK K NN + ++P A +
Sbjct: 119 ----DLEEWNQ---RQSEQVEKNKI-----NNRIADKAFYQQPDADI 153
Score = 30.1 bits (67), Expect = 4.6
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 27/83 (32%)
Query: 1090 EHLRKW----------LDAEFYDSNVVKVQLPYAVPVPNLTTEQQKDRRKELAKKLVEMN 1139
E +RKW LDA S V++ + E+ K +E ++ E
Sbjct: 85 ESIRKWREEQRKRLQELDAA---SKVMEQEW----------REKAKKDLEEWNQRQSEQV 131
Query: 1140 AKKREERLVDDERHLNELLELRE 1162
K + + D+ + +
Sbjct: 132 EKNKINNRIADK----AFYQQPD 150
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 43.8 bits (102), Expect = 6e-04
Identities = 24/146 (16%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 683 FFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKE-YAKAIQEKVDKENAEQKKIDALTP 741
F K++ KY + K + E Q +LKSKE AI + ++K+I+
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494
Query: 742 QVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEKR---KKILREREEEKEEQPAMKKIKV 798
+ ++ + + +Q+ +++ ++ + +K+ +R + +EQ +K+
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 554
Query: 799 EKPEESNEKTKRHKIKSEPKENDSSK 824
++ E+ ++ + + + E +
Sbjct: 555 QEQEQLLKEGFQKESRIMKNEIQDLQ 580
Score = 32.2 bits (72), Expect = 2.2
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 1122 EQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSM 1181
EQ++ +E K+L E R + L + ER L +L+E +L +E F+
Sbjct: 518 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL--KLQEQEQL-------LKEGFQ-- 566
Query: 1182 GINNIQDLNKSINQLQQKIEKTKAKIIA 1209
+ + I LQ K+ + KA I+
Sbjct: 567 --KESRIMKNEIQDLQTKMRRRKACTIS 592
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 38.8 bits (89), Expect = 0.020
Identities = 16/93 (17%), Positives = 27/93 (29%)
Query: 727 DKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILREREEE 786
EN + + P+ E V E + K E + K +K
Sbjct: 13 QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS 72
Query: 787 KEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKE 819
+ PA + + E+ K + SE
Sbjct: 73 ETASPASNEAATTETAEAASAAKPEEKASEVVA 105
Score = 33.8 bits (76), Expect = 0.81
Identities = 15/139 (10%), Positives = 36/139 (25%), Gaps = 1/139 (0%)
Query: 714 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEK 773
++ + + + + + E + S E E
Sbjct: 28 ENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTET 87
Query: 774 EKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTIST 833
+ + EE+ E A KP+ E + + ++ E+ + +
Sbjct: 88 AEAAS-AAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEV 146
Query: 834 VDFSKVNYNKYMAKPDTKI 852
N K + + K
Sbjct: 147 QPDVPKNTEKTLKPKEIKF 165
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA),
exonuclease, transferase, transferase/DNA complex; HET:
US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1
PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A*
2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Length = 605
Score = 38.7 bits (91), Expect = 0.020
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 324 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD--YI--------- 372
I + E + +++L++ A D E + + + + YI
Sbjct: 10 ILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA 69
Query: 373 VDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM-FDT 422
D + LE+L +L D+ +KV D L +G+ + G+ FDT
Sbjct: 70 PDQISRERALELLKPLLEDEKALKVGQNLKYDRGILAN-YGIELRGIAFDT 119
Score = 38.7 bits (91), Expect = 0.020
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 1769 ITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD--YI--------- 1817
I + E + +++L++ A D E + + + + YI
Sbjct: 10 ILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA 69
Query: 1818 VDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM-FDT 1867
D + LE+L +L D+ +KV D L +G+ + G+ FDT
Sbjct: 70 PDQISRERALELLKPLLEDEKALKVGQNLKYDRGILAN-YGIELRGIAFDT 119
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex,
thymine-adenine, CLOS conformation; HET: DNA 2DT D3T;
1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A*
3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A*
3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A*
1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ...
Length = 592
Score = 38.3 bits (90), Expect = 0.027
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 315 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 374
P S+ + + V+E + A+ +E + + + + +
Sbjct: 4 PSSEEEKPLAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLR 63
Query: 375 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG-MFDT 422
L D+ K + L+ G+ + G FD
Sbjct: 64 PETA-LADPQFVAWLGDETKKKSMFDSKRAAVALKW-KGIELCGVSFDL 110
Score = 38.3 bits (90), Expect = 0.027
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 1760 PLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVD 1819
P S+ + + V+E + A+ +E + + + + +
Sbjct: 4 PSSEEEKPLAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLR 63
Query: 1820 TLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVG-MFDT 1867
L D+ K + L+ G+ + G FD
Sbjct: 64 PETA-LADPQFVAWLGDETKKKSMFDSKRAAVALKW-KGIELCGVSFDL 110
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 36.7 bits (84), Expect = 0.054
Identities = 13/100 (13%), Positives = 45/100 (45%)
Query: 720 KAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKI 779
K I++K++ + ++ ++ + K E K + + +++ + + + + ++
Sbjct: 137 KDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQK 196
Query: 780 LREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKE 819
L E++ E K+ ++++ + + K + E +E
Sbjct: 197 LEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQE 236
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 35.3 bits (81), Expect = 0.059
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 713 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVL-KQIKSEEKVEM 771
LKS E K + ++ ++ ++ + K E+ V + QE L Q+++E+
Sbjct: 6 LKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLA 65
Query: 772 EKEKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSE 816
+ E+R L + + + E + ++E EE N + K K E
Sbjct: 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 36.5 bits (83), Expect = 0.064
Identities = 16/107 (14%), Positives = 46/107 (42%)
Query: 720 KAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKI 779
+++E K A +++ ++ E + +E + ++ ++M KEK +
Sbjct: 42 PSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQK 101
Query: 780 LREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKENDSSKGK 826
+ +E +E A ++++ ++ E+ ++ I+ +K K
Sbjct: 102 MESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEK 148
Score = 35.7 bits (81), Expect = 0.12
Identities = 16/117 (13%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 696 QKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQ 755
+ + R + K + + +K++ +K +A ++ E + +
Sbjct: 123 KDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEA---ELLKHLAEKREHER 179
Query: 756 EPVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHK 812
E + ++ ++M KEK + + +E +E A ++++ ++ E+ +++K
Sbjct: 180 EVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNK 236
Score = 32.6 bits (73), Expect = 0.96
Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 699 KLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEEN-VKITQEP 757
+ + E ++ ++E K + ++ K AE+++ + Q E N +K+ +E
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEK 97
Query: 758 VVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSE 816
+ K ++E E + L+E+++ EE + + ++ K++S
Sbjct: 98 LAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESN 156
Score = 31.9 bits (71), Expect = 1.9
Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 696 QKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAE-QKKIDALTPQVKTEPEENVKIT 754
+ E Q+ +KE K + ++ K AE ++ + + E +K+
Sbjct: 137 ENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMA 196
Query: 755 QEPVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIK 797
+E + K ++E E + L+E+++ EE K++K
Sbjct: 197 KEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRKNKELK 239
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 35.9 bits (82), Expect = 0.14
Identities = 19/111 (17%), Positives = 43/111 (38%)
Query: 716 KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEK 775
++ +Q K+D + + K + + + VV + K+ +++E + K
Sbjct: 467 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 526
Query: 776 RKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKENDSSKGK 826
+ +REE K+ K+ P + K+ + E N + + K
Sbjct: 527 LEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREK 577
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled
post-transcriptional, gene regulation, chaperone; HET:
EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 35.1 bits (80), Expect = 0.17
Identities = 18/163 (11%), Positives = 56/163 (34%), Gaps = 10/163 (6%)
Query: 1138 MNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGIN------NIQDLNK 1191
+ + ++L++ E+ L ++ D A ++ L
Sbjct: 1 LGSNTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKL 60
Query: 1192 SINQLQQKIEKTKAKIIAYNNGEDLTEEPK--AKLSKEIAVPESEAEFKAWLIETKKKRA 1249
+++ +Q ++ T AKI + + + L+ E ++ E + +
Sbjct: 61 QVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEED--IAKERSNQANREIENLQN 118
Query: 1250 YIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDD 1292
I K ++ ++++ + A + + +E+ ++
Sbjct: 119 EIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQI 161
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 33.8 bits (78), Expect = 0.18
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 22/108 (20%)
Query: 725 KVD-KENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILRER 783
++D KE E A P VK +E VK+ E + + E E E + K ER
Sbjct: 45 RMDWKETPEAHVFKADLPGVK---KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVER 101
Query: 784 ------------EEEKEEQ--PAMK----KIKVEKPEESNEKTKRHKI 813
E+ K E+ ++ + V K E + K +I
Sbjct: 102 SSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 32.4 bits (75), Expect = 0.31
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 725 KVD-KENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILRER 783
+VD KE + A P + +++ + +L I+ E K E E + ER
Sbjct: 6 RVDIKEEVNHFVLYADLPGID---PSQIEVQMDKGIL-SIRGERKSESSTETERFSRIER 61
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 34.9 bits (80), Expect = 0.38
Identities = 39/240 (16%), Positives = 88/240 (36%), Gaps = 22/240 (9%)
Query: 1116 VPNLTTEQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAR 1175
P+ T+ + + +K+ K E R + ++ +E L+ + ++ SD A
Sbjct: 763 FPDPTSIESEKEKKDFVKLFGEYL------RAENILQNYDEFATLKALQQIDLSDPV-AV 815
Query: 1176 EAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNN-GEDLTEEPKAKLSKEIAVPESE 1234
E FK+ + + + K + AYN+ + E +A+ ++ +
Sbjct: 816 EKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDD 875
Query: 1235 AEFKAWLIETKK-KRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRDDDF 1293
F+ L+++++ YI+ ++ + + +E RLI
Sbjct: 876 VVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMI----EEVKRLI---------RSSL 922
Query: 1294 GMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEANQL 1353
G R ++ V I + D ++ R+ E +L +E+ L+ A +
Sbjct: 923 GNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNEDAAKRY 982
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 34.4 bits (78), Expect = 0.44
Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 723 QEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQ----IKSEEKVEMEKEK--- 775
Q + + + + ++ + + + + +V++ E Q +++E E
Sbjct: 630 QNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLE 689
Query: 776 RKKILREREEEKEEQPAMKKIKVEKPEESNEKTKR 810
R+KIL + E EK + ++ + ES K
Sbjct: 690 RQKILDQSEAEKARKELLELEAMSMAVESTGNAKA 724
Score = 32.5 bits (73), Expect = 1.7
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 10/169 (5%)
Query: 1122 EQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSM 1181
++ E+ E AK +RL + R E ++ + E + SM
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714
Query: 1182 GINNIQDLNKSINQL--QQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKA 1239
+ + + +IE + + A + L E +A+L + V E E +
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYAR 774
Query: 1240 WLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEK 1288
+E + + A++ + K + I +LA
Sbjct: 775 AQLELEVSK--------AQQLANVEAKKFKEMTEALGPGTIRDLAVAGP 815
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 34.0 bits (77), Expect = 0.55
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 16/154 (10%)
Query: 677 IAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKK- 735
++ F G K + R + S E ++ E E+KK
Sbjct: 263 FKKLNEIFGTYSTTGVQKSGYQLQRPLLANADIARIINSNEVQSVVKVAGTTETHERKKN 322
Query: 736 -------IDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILREREEEKE 788
+ L P K E+ K + ++ K RK ++ +
Sbjct: 323 PLTNNNALFKLNPAAKIVKEQAKKAAEA-------SKAKRQATLKANRKAAKTHKKGSQA 375
Query: 789 EQPAMKKIKVEKPEESNEKTKRHKIK-SEPKEND 821
A K E ++ ++ + E KE D
Sbjct: 376 WIAAFNKANEEAIAKARQEDADFIAQGQEIKEGD 409
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 32.3 bits (73), Expect = 0.57
Identities = 18/104 (17%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 714 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEK 773
+ + IQ+K+ E AE+++ ++ E + +E + ++ ++M K
Sbjct: 40 RRDPSLEEIQKKL--EAAEERR-KYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAK 96
Query: 774 EKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEP 817
EK + + +E +E A ++++ ++ E+ +++K E
Sbjct: 97 EKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEE 140
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.67
Identities = 23/161 (14%), Positives = 60/161 (37%), Gaps = 23/161 (14%)
Query: 687 KMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTE 746
+M + +YQ ++ T + + +L +Y ++E K QK + +V
Sbjct: 827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREH--KSIIIQKHVRGWLARVHYH 884
Query: 747 PEENVKITQEPVV--------LKQIKSEE---------KVEMEKEKRK---KILREREEE 786
+ + LK++K E + +E + + KI + +E
Sbjct: 885 RTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY 944
Query: 787 KEEQPAMKKIKVEKPEESNE-KTKRHKIKSEPKENDSSKGK 826
K M +++ E+ + ++ +++ +E ++ +
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985
Score = 33.9 bits (78), Expect = 0.77
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 2/132 (1%)
Query: 693 NKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENA--EQKKIDALTPQVKTEPEEN 750
I K R + ++ + +Q + A E KK+ V+ + +
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH 923
Query: 751 VKITQEPVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKR 810
+ + + + L++ E+ E + K E E + ++ + E K
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983
Query: 811 HKIKSEPKENDS 822
+++ S +E
Sbjct: 984 NRVLSLQEEIAK 995
Score = 30.1 bits (68), Expect = 9.0
Identities = 18/123 (14%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 714 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVL---KQIKSEEKVE 770
K + + I E+ + + +K++ L TE E+ + + + + +
Sbjct: 929 KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988
Query: 771 MEKE---------KRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKEND 821
+++E + + + EE ++ + V + +E N K K + + +D
Sbjct: 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048
Query: 822 SSK 824
+K
Sbjct: 1049 QAK 1051
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 32.3 bits (73), Expect = 0.68
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 764 KSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPK 818
K +K E+ K +R++ +R +E K+ + A KK + + + + KI K
Sbjct: 93 KRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVK 147
>1nqk_A Alkanesulfonate monooxygenase; structural genomics, beta barrel, PSI,
protein structure INI midwest center for structural
genomics, MCSG; 2.20A {Escherichia coli} SCOP: c.1.16.4
PDB: 1m41_A
Length = 381
Score = 33.2 bits (76), Expect = 0.78
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 1271 AAAQERMRLISELARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILR 1330
+E++ + A R FG+R VI +T+ +E + E ++
Sbjct: 202 ELVKEKIEQVRAKAAAHGRKIRFGIR------LHVI---VRETN-DEAWQA---AERLIS 248
Query: 1331 QHDPE 1335
D E
Sbjct: 249 HLDDE 253
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 32.2 bits (72), Expect = 1.2
Identities = 10/65 (15%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 1241 LIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISE------LARKEKRDDDFG 1294
+ E K++R + + ++R+ A +R + + R + ++E DD++
Sbjct: 124 IQECKRRRFF--ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWD 181
Query: 1295 MRDED 1299
+ +++
Sbjct: 182 LPEDE 186
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral
protein complex, cell cycle; 2.30A {Homo sapiens} PDB:
2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Length = 704
Score = 32.6 bits (73), Expect = 1.5
Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 35/254 (13%)
Query: 1125 KDRRKELAKKLVEMNAKKREE-RLVDDERHLNELLELREIVELTPSDHSHAREAFKSMGI 1183
R+ +L + + + V +L +E + S + +R + GI
Sbjct: 377 NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGI 436
Query: 1184 NNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLT-EEPKAKLSKEIAVPESEAEFKAWLI 1242
+ L K + +L Q+ + + + + E+ T + +AK + S +K
Sbjct: 437 QTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRA 496
Query: 1243 ETKKKRAYIIDKKNARKQRRQ---------------------DLAKRRTAAAQERMRLIS 1281
E R + A Q ++ + A + +++
Sbjct: 497 EGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVN 556
Query: 1282 EL-----------ARKEKRDDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILR 1330
L +E ++D + D K + A D EE + EL+ +
Sbjct: 557 VLKSLLSNLDEVKKEREGLENDLKSVNFD-MTSKFLTALAQDGVINEEALSVTELDRVYG 615
Query: 1331 QHDPEFTSLNQEQE 1344
+ ++QE
Sbjct: 616 GLTTKVQESLKKQE 629
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 32.2 bits (73), Expect = 1.8
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 1121 TEQQKDRRKELAKKLVEMNAKKR--EERLVDDERHLNELLELREIVELTPSDHSHAREAF 1178
+ +D ++ K E+ + + DE +++ + + EA
Sbjct: 40 LQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEAS 99
Query: 1179 KSMGINNIQDLNKSINQLQQKIEKTKAKI 1207
++I+ L + N QKI K K+
Sbjct: 100 ILTHDSSIRYLQEIYNSNNQKIVNLKEKV 128
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 32.3 bits (73), Expect = 2.0
Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 11/132 (8%)
Query: 676 KIAQIGLFFEDKMKIGSNKYQKI--KLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQ 733
++ I + E ++ + + I +L+ + RF K + E
Sbjct: 606 QVKFIKMIIEKELTVTNKPRNAIIQELENL----GFPRFNKEGKPYYGSPNDEIAEQIND 661
Query: 734 KKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEME-----KEKRKKILREREEEKE 788
K + + E+ + E + M KE+ +K+L++++E++
Sbjct: 662 VKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKET 721
Query: 789 EQPAMKKIKVEK 800
E + K+ +
Sbjct: 722 ELENLLKLSAKD 733
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 31.2 bits (70), Expect = 2.1
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 693 NKYQKIKLKTSRFETPYQRFLKS-KEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENV 751
Y+K K E +R + K Y+++I + +K + P+V+ E
Sbjct: 55 AMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVI---QKKRSEKPEVRDAAREAA 111
Query: 752 KITQEPVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKR 810
L++IK K +++K KK + ++ + + + + P+ KR
Sbjct: 112 --------LREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGKR 162
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 2.4
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 931 QFDKNVVTHYDIQEQIFDYAFSHLSINTE--GNVNHPIVLTEPFLNPNYSRSLMSELLFE 988
QF+ + ++ + G + ++P+Y ++E +
Sbjct: 1421 QFEYVLYPSKTLKTDGVRAVSI----TSFGFGQKGGQAI----VVHPDYLYGAITEDRYN 1472
Query: 989 CYQ 991
Y
Sbjct: 1473 EYV 1475
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 31.8 bits (73), Expect = 2.4
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 766 EEKVEMEKEKR-KKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKENDSSK 824
+E +E+E E R ++++ R+ E+E++ + +K+ + E+ E + H+ E K
Sbjct: 253 DEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIE-EKRKEHQEAHRKDREKYGTVHWK 311
Query: 825 GKSGGTISTVDFSKVNYNKYMAKPDTKILP 854
+S + K + D+ +LP
Sbjct: 312 ERSYIKYREKRQQQPLKPKEKLERDSNVLP 341
>1g03_A HTLV-I capsid protein; beta hairpin loop, helix core, viral
protein; NMR {Human t-lymphotropic virus 1} SCOP:
a.73.1.1
Length = 134
Score = 30.3 bits (67), Expect = 2.8
Identities = 17/116 (14%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 527 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA- 585
+ H N + + +++L + +++ S ++ + +Q +D+Q +
Sbjct: 2 VMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQY 61
Query: 586 CCNPVPQTVKEHVLDIHAIILKARLQSLTK--------PVEKLQPSLDGMKKKQQQ 633
C+ + ++ H + ++I +A + +T V+ P G++++ QQ
Sbjct: 62 LCSSLVASL--HHQQLDSLISEAETRGITSYNPLAGPLRVQANNPQQQGLRREYQQ 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 2.9
Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 26/54 (48%)
Query: 266 EKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 319
EK ALK L ++ L LY D P AL + T
Sbjct: 18 EK-QALKKL----------QA-------SLKLYAD--D----SAP--ALAIKAT 45
Score = 30.7 bits (68), Expect = 2.9
Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 26/54 (48%)
Query: 1711 EKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDT 1764
EK ALK L ++ L LY D P AL + T
Sbjct: 18 EK-QALKKL----------QA-------SLKLYAD--D----SAP--ALAIKAT 45
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 31.6 bits (71), Expect = 3.1
Identities = 21/154 (13%), Positives = 59/154 (38%), Gaps = 5/154 (3%)
Query: 658 IICAPSNTHLSSYDPQ-----DKKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRF 712
I +SS + + KK+++ G+ +++ L +
Sbjct: 482 IEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKD 541
Query: 713 LKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEME 772
++ + A ++ K+ + K +P + Q+ V++ E+
Sbjct: 542 VEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNA 601
Query: 773 KEKRKKILREREEEKEEQPAMKKIKVEKPEESNE 806
++ R+R+ +++E + K+ ++E+ EE ++
Sbjct: 602 DVSEEERSRKRKLDEKENLSAKRSRIEQKEELDD 635
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 30.1 bits (68), Expect = 4.4
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 725 KVD-KENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILRE 782
+ E + K+ A P V +E++ + L +I+++ M E + I E
Sbjct: 58 PISIIEGDQHIKVIAWLPGVN---KEDIILNAVGDTL-EIRAKRSPLMITESERIIYSE 112
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.8 bits (70), Expect = 5.2
Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 691 GSNKYQKIKLKTSRFETPYQRFLKS----KEYAKAIQEKVDKENAEQKKIDALTPQVKTE 746
G Y KI KT ++ K + + ++ A Q ++ +
Sbjct: 115 GDTSY-KIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVS 173
Query: 747 PEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEESNE 806
K E + K K + + R++I E + K + + + +E
Sbjct: 174 GSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVL-FQGPRGSRYDE 232
Query: 807 KTKRHK 812
R +
Sbjct: 233 AEGRFE 238
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis,
CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A
{Bacillus subtilis}
Length = 758
Score = 30.6 bits (70), Expect = 5.8
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 25/129 (19%)
Query: 1215 DLTEEPKAKLS-KEIAVPESEAEFKAWLIETKKKRAYIIDKKNARKQRRQDLAKRRTAAA 1273
DL +E +K+ + P + E + L E +K +K A + Q+ K AA
Sbjct: 376 DLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRK------EKDAA--VQSQEFEK----AA 423
Query: 1274 QER---MRLISELAR-----KEKRDDDFGMRDEDWDVYKVINKDAG---DTDSEEEQERL 1322
R RL ++ KEK+ + D D+ V++ G ++ E ++L
Sbjct: 424 SLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVD-DIAMVVSSWTGVPVSKIAQTETDKL 482
Query: 1323 IELEEILRQ 1331
+ +E IL
Sbjct: 483 LNMENILHS 491
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.0 bits (70), Expect = 6.0
Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 19/192 (9%)
Query: 640 DSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIGSNKYQKIK 699
++D N + + P N ++ + ++ + + + K +
Sbjct: 1827 RNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLK-R 1885
Query: 700 LKTSRFETP--YQRFLKS-----KEYAKAIQEKVDKENAEQKKIDALTPQVKT------- 745
+ TP Y F+ E ++E+ N KK+ QVK
Sbjct: 1886 QGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQ 1945
Query: 746 -EPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEES 804
E +VK Q LKQ+ +++ E ++K RE + + + + ++ K
Sbjct: 1946 KNRELDVKNEQANQKLKQMVQDQQ---AAEIKQKDARELQVQLDVRNKEIAVQKVKAYAD 2002
Query: 805 NEKTKRHKIKSE 816
EK + E
Sbjct: 2003 LEKAEPTGPLRE 2014
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 29.2 bits (64), Expect = 8.7
Identities = 17/125 (13%), Positives = 45/125 (36%)
Query: 714 KSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEK 773
K +E + + + +++ T VV Q+ EE+ ++
Sbjct: 38 KLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQ 97
Query: 774 EKRKKILREREEEKEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKENDSSKGKSGGTIST 833
++ + E E + ++ + EK E+ + +K E ++ + + + G +
Sbjct: 98 KENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQLLHQ 157
Query: 834 VDFSK 838
+ K
Sbjct: 158 LHKQK 162
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.9 bits (67), Expect = 9.4
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 759 VLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEE 803
++ ++ K + E+E+R ++ + +E++E + M+K K E
Sbjct: 391 AKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.5 bits (65), Expect = 9.5
Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 757 PVVLKQIKSEEKVEMEKEKRKKILREREEEKEEQPAMKKIKVEKPEES-----NEKTKRH 811
+ + E + +E+++K L+E + + + K +K E +E+ +++
Sbjct: 90 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 149
Query: 812 KIKSEPKE 819
KI + +
Sbjct: 150 KINNRIAD 157
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 29.8 bits (68), Expect = 9.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 559 STGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAII 605
S VL + +MA R + IFA NP+P+ + L+ A I
Sbjct: 266 SAPGVLKAEWISKMA---ARPV--IFAMANPIPEIYPDEALEAGAYI 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 29,244,443
Number of extensions: 1780447
Number of successful extensions: 5100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4861
Number of HSP's successfully gapped: 198
Length of query: 1973
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1865
Effective length of database: 3,686,325
Effective search space: 6874996125
Effective search space used: 6874996125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (28.7 bits)