RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15183
(1973 letters)
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 292
Score = 215 bits (548), Expect = 5e-63
Identities = 131/285 (45%), Positives = 182/285 (63%), Gaps = 9/285 (3%)
Query: 241 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA----IESFCHPYEYELD 296
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D + HPYEYE+D
Sbjct: 1 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 60
Query: 297 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 356
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 61 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 120
Query: 357 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 416
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 121 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 180
Query: 417 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 476
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 181 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 240
Query: 477 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 521
LL +YD ++ L + N + SRN+ K ++E +
Sbjct: 241 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRP 280
Score = 215 bits (548), Expect = 5e-63
Identities = 131/285 (45%), Positives = 182/285 (63%), Gaps = 9/285 (3%)
Query: 1686 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA----IESFCHPYEYELD 1741
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D + HPYEYE+D
Sbjct: 1 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 60
Query: 1742 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 1801
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 61 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 120
Query: 1802 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 1861
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 121 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 180
Query: 1862 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 1921
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 181 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 240
Query: 1922 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 1966
LL +YD ++ L + N + SRN+ K ++E +
Sbjct: 241 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRP 280
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 206
Score = 127 bits (321), Expect = 1e-33
Identities = 22/187 (11%), Positives = 64/187 (34%), Gaps = 19/187 (10%)
Query: 318 DTPLMMITEPEQVTQLVSELKQ------QQEIAIDLEY--------HNYRSYQGYTCLMQ 363
T + + ++ +S +++ + + D+ + ++ ++
Sbjct: 18 QTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVK 77
Query: 364 ISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 422
+STR+ + K ++L+ L K + V + D+ L+++ GL + +
Sbjct: 78 LSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINV 137
Query: 423 HQACKFLP----MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 478
+ + L D + + + PE ++ A + ++
Sbjct: 138 GKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIV 197
Query: 479 YVYDCMK 485
V+D +
Sbjct: 198 NVWDQLS 204
Score = 127 bits (321), Expect = 1e-33
Identities = 22/187 (11%), Positives = 64/187 (34%), Gaps = 19/187 (10%)
Query: 1763 DTPLMMITEPEQVTQLVSELKQ------QQEIAIDLEY--------HNYRSYQGYTCLMQ 1808
T + + ++ +S +++ + + D+ + ++ ++
Sbjct: 18 QTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVK 77
Query: 1809 ISTRDKDYIVDTLK-LREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT 1867
+STR+ + K ++L+ L K + V + D+ L+++ GL + +
Sbjct: 78 LSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINV 137
Query: 1868 HQACKFLP----MPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLL 1923
+ + L D + + + PE ++ A + ++
Sbjct: 138 GKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIV 197
Query: 1924 YVYDCMK 1930
V+D +
Sbjct: 198 NVWDQLS 204
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 106 bits (265), Expect = 7e-27
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 870 PIVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER-----------GKKDGETQVGNDI 918
V D G ++G+A +P I + IA + G D + +G++
Sbjct: 5 ACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDE- 63
Query: 919 SNIEAVRFQLKTQFDKNVVTHYDIQEQIFDYAFSH-LSINTEGNVNHPIVLTEPFLNPNY 977
IE + K +V +D+ E+ + L E +H +LTEP LN
Sbjct: 64 -AIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE---DHYFLLTEPPLNTPE 119
Query: 978 SRSLMSELLFECYQVPSVCYGIDSLFS 1004
+R +E++FE + VP + + ++ +
Sbjct: 120 NREYTAEIMFESFNVPGLYIAVQAVLA 146
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 105 bits (263), Expect = 7e-27
Identities = 36/137 (26%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 871 IVFDNGAWCCRVGWASCEKPNLIFKNLIAKPRKER---GKKDGETQVGNDISNIEAVRFQ 927
+V DNG+ + G+A + P +F +++ +PR + G ++ VG++ + +
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI-LT 60
Query: 928 LKTQFDKNVVTHYDIQEQIFDYAFSHLSINTEGNVNHPIVLTEPFLNPNYSRSLMSELLF 987
LK + ++T++D E+I+ + F + HP +LTE LNP +R M++++F
Sbjct: 61 LKYPIEHGIITNWDDMEKIWHHTFYNE--LRVAPEEHPTLLTEAPLNPKANREKMTQIMF 118
Query: 988 ECYQVPSVCYGIDSLFS 1004
E + VP++ I ++ S
Sbjct: 119 ETFNVPAMYVAIQAVLS 135
>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 94.7 bits (236), Expect = 4e-24
Identities = 38/51 (74%), Positives = 44/51 (86%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGALPSKVK 53
YQLYRNTTLGN+LQESLDELIQ ITP LA++VLLQFDK+IN AL +V+
Sbjct: 1 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVR 51
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 94.2 bits (234), Expect = 3e-23
Identities = 48/102 (47%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 516 KPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQ 574
KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+
Sbjct: 1 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 60
Query: 575 SIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 616
+P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 61 ELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKS 102
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 95.9 bits (238), Expect = 1e-22
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 8/188 (4%)
Query: 1292 DFGMRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQELSPKEA- 1350
D RD + K++ + + E+E + +++E L +F + S
Sbjct: 33 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 92
Query: 1351 -------NQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIF 1403
+ IG ER PE LFQPS +G AGI ET + I + L N
Sbjct: 93 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNV 152
Query: 1404 VTGSLCQLPGFVERLNKDLLENRPFQSHFSVSLAENPELDAWSGARQFSLSENFHDFAVT 1463
++G PG +R+ K++ P + + W G + F +T
Sbjct: 153 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIT 212
Query: 1464 QSDYQEKG 1471
+ +Y E G
Sbjct: 213 KQEYDEAG 220
Score = 58.2 bits (140), Expect = 1e-09
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 1014 SGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSR 1073
+G+++ G TH +P+ G R+DL G + +L K+L + S + +
Sbjct: 3 TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREI 62
Query: 1074 SEELLWDYGFVATDYREHLRKWLDA-------EFYDSNVVKV 1108
++ +VA D+ + + E D V+ +
Sbjct: 63 VRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITI 104
>d1nvpd2 b.56.1.1 (D:54-99) Small chain TOA2, C-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 46
Score = 88.2 bits (219), Expect = 5e-22
Identities = 34/47 (72%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
Query: 1487 SRLTFKSGKLNTYRFCDNVWTFVLTDVEFREVAEIARVNKLKIVACD 1533
+R+ F+ G LNTYRFCDNVWTFVL DVEFREV E+ +V+K+KIVACD
Sbjct: 1 NRVNFR-GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACD 46
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 50
Score = 86.6 bits (215), Expect = 3e-21
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 3 YQLYRNTTLGNTLQESLDELIQYGTITPTLAMKVLLQFDKSINGAL 48
Y+LYR +T+GN+L ++LD LI G I +LAM+VL FDK + L
Sbjct: 3 YELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETL 48
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain
{Escherichia coli [TaxId: 562]}
Length = 193
Score = 91.5 bits (226), Expect = 3e-21
Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 7/194 (3%)
Query: 323 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 382
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + +
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW- 63
Query: 383 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT-HQACKFLPMPRQSLAYLLK 441
L +L D +I K H D++ FG + DT A A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 442 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 501
Y V DK+ DW RPL E +YA D YLL + + ++ + +
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE-----ASGWLPA 178
Query: 502 TFTNSRNICKLKYE 515
R + + E
Sbjct: 179 ALDECRLMQMRRQE 192
Score = 91.5 bits (226), Expect = 3e-21
Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 7/194 (3%)
Query: 1768 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDL 1827
MIT + + L ++ IA+D E+ R+Y L+Q+ + ++D L + +
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW- 63
Query: 1828 EVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDT-HQACKFLPMPRQSLAYLLK 1886
L +L D +I K H D++ FG + DT A A +++
Sbjct: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123
Query: 1887 HYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLS 1946
Y V DK+ DW RPL E +YA D YLL + + ++ + +
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE-----ASGWLPA 178
Query: 1947 TFTNSRNICKLKYE 1960
R + + E
Sbjct: 179 ALDECRLMQMRRQE 192
>d1nh2d2 b.56.1.1 (D:55-121) Small chain TOA2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 75.0 bits (184), Expect = 5e-17
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 15/63 (23%)
Query: 1485 VKSRLTFKSGKLNTYRFCDNVWTFVLTDVEFR--------------EVAEIARVNKLKIV 1530
+S+LT K G L+TY FCD+VWTF++ + + + + V+KL+IV
Sbjct: 2 TQSKLTVK-GNLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIV 60
Query: 1531 ACD 1533
AC+
Sbjct: 61 ACN 63
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA
polymerase {Escherichia coli [TaxId: 562]}
Length = 195
Score = 74.3 bits (181), Expect = 3e-15
Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 19/185 (10%)
Query: 323 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL------ 376
I + E + +++L++ A D E + + + + +
Sbjct: 9 TILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLD 68
Query: 377 -----KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKF--L 429
LE+L +L D+ +KV D L FDT
Sbjct: 69 APDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNS 128
Query: 430 PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL------PEPAIQYARTDTHYLLYVYDC 483
R + L + + + ++ L E A +YA D L ++
Sbjct: 129 VAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 188
Query: 484 MKLDL 488
M DL
Sbjct: 189 MWPDL 193
Score = 74.3 bits (181), Expect = 3e-15
Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 19/185 (10%)
Query: 1768 MITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL------ 1821
I + E + +++L++ A D E + + + + +
Sbjct: 9 TILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLD 68
Query: 1822 -----KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKF--L 1874
LE+L +L D+ +KV D L FDT
Sbjct: 69 APDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNS 128
Query: 1875 PMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPL------PEPAIQYARTDTHYLLYVYDC 1928
R + L + + + ++ L E A +YA D L ++
Sbjct: 129 VAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 188
Query: 1929 MKLDL 1933
M DL
Sbjct: 189 MWPDL 193
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 96
Score = 66.4 bits (162), Expect = 1e-13
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 534 LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQT 593
+ +++ +RELY+WRD IAR DES +V+PN +L + P D+ G+ + N V +
Sbjct: 14 IPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEH 73
Query: 594 VKEHVLDIHAIILKAR 609
V+++ + +I A
Sbjct: 74 VRQNAKLLANLIRDAL 89
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 190
Score = 65.9 bits (160), Expect = 2e-12
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 1351 NQLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ 1410
+ +G ER PE LFQP ++ G++E L + + +I ++G
Sbjct: 97 RIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTM 156
Query: 1411 LPGFVERLNKDL 1422
PG RL ++L
Sbjct: 157 YPGLPSRLEREL 168
Score = 59.0 bits (142), Expect = 4e-10
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 1015 GVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSRS 1074
GV++ G TH+ PV G +R+D+ G + +L KLL L+ + +S
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETV 60
Query: 1075 EELLWDYGFVATDYREHLRKW 1095
+ +V + + +
Sbjct: 61 RMIKEKLCYVGYNIEQEQKLA 81
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 258
Score = 66.3 bits (161), Expect = 4e-12
Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 20/206 (9%)
Query: 1295 MRDEDWDVYKVINKDAGDTDSEEEQERLIELEEILRQHDPEFTSLNQEQEL---SPKEAN 1351
+RD + + + + E +L + ++D + + ++ K+
Sbjct: 48 LRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEF 107
Query: 1352 QLHIGVERMCGPECLFQPSML-GSIQAGISETLNFVLNSYPQHIAQSLANNIFVTGSLCQ 1410
+ +G ER GPE F P ISE ++ V+ + P + + L NI ++G
Sbjct: 108 SIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTM 167
Query: 1411 LPGFVERLNKDLLEN----------------RPFQSHFSVSLAENPELDAWSGARQFSLS 1454
F RL +DL +P V W G + +
Sbjct: 168 FRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 227
Query: 1455 ENFHDFAVTQSDYQEKGGEFFRVHPC 1480
F+ T+ DY+E G R +P
Sbjct: 228 PEFYQVCHTKKDYEEIGPSICRHNPV 253
Score = 61.7 bits (149), Expect = 1e-10
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 1014 SGVIISCGYQCTHVIPVINGCIDASKAKRIDLGGFSVIHHLHKLLQLKYPSHINSITPSR 1073
+G +I G THVIPV G + S K I + G + + + +LL+ + +
Sbjct: 4 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLET 63
Query: 1074 SEELLWDYGFVATDYREHLRKW 1095
++ + Y +V D + K+
Sbjct: 64 AKAVKERYSYVCPDLVKEFNKY 85
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli
[TaxId: 562]}
Length = 101
Score = 60.3 bits (146), Expect = 2e-11
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 521 EEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 580
E+ + +I + L +Q L+ L WR R AR++D + +V+ L +A+ +P +
Sbjct: 4 EDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSL 62
Query: 581 QGIFACCNPVPQTVKEHVLDIHAIILKAR 609
++ H + A++ KA+
Sbjct: 63 GE-LDSLGLSGSEIRFHGKTLLALVEKAQ 90
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA
polymerase {Bacillus stearothermophilus, newly
identified strain as yet unnamed [TaxId: 1422]}
Length = 171
Score = 59.0 bits (142), Expect = 3e-10
Identities = 17/165 (10%), Positives = 38/165 (23%), Gaps = 6/165 (3%)
Query: 329 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 388
+ V+E + A+ +E + + + + +
Sbjct: 5 TLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETA-LADPQFVAW 63
Query: 389 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL--PMPRQSLAYLLKHYCDV 446
L D+ K + L+ FD A L +A K
Sbjct: 64 LGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYE 123
Query: 447 DSDKTFQLFDW---RHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 488
++ R P ++ + + +L
Sbjct: 124 AVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDEL 168
Score = 59.0 bits (142), Expect = 3e-10
Identities = 17/165 (10%), Positives = 38/165 (23%), Gaps = 6/165 (3%)
Query: 1774 QVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEV 1833
+ V+E + A+ +E + + + + +
Sbjct: 5 TLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETA-LADPQFVAW 63
Query: 1834 LTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFL--PMPRQSLAYLLKHYCDV 1891
L D+ K + L+ FD A L +A K
Sbjct: 64 LGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYE 123
Query: 1892 DSDKTFQLFDW---RHRPLPEPAIQYARTDTHYLLYVYDCMKLDL 1933
++ R P ++ + + +L
Sbjct: 124 AVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDEL 168
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 35.5 bits (81), Expect = 0.050
Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 13/160 (8%)
Query: 675 KKIAQIGLFFEDKMKIGSNKYQKIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKEN---- 730
K LF + + KY + K + E Q +LKSKE + D+
Sbjct: 145 SKPGGYRLFVQKLQDLK-KKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKE 203
Query: 731 ----AEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKVEMEKEKRKKILREREEE 786
E+ K ++ K E K Q + K E K+ +K+ +R +
Sbjct: 204 KEIEVERVKAESAQASAKMLHEMQRKNEQM----MEQKERSYQEHLKQLTEKMENDRVQL 259
Query: 787 KEEQPAMKKIKVEKPEESNEKTKRHKIKSEPKENDSSKGK 826
+EQ +K+++ E+ ++ + + + E + K
Sbjct: 260 LKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 34.3 bits (78), Expect = 0.12
Identities = 25/168 (14%), Positives = 60/168 (35%), Gaps = 2/168 (1%)
Query: 1122 EQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELREIVELTPSDHSHAREAFKSM 1181
++ + + L E + + +L +L++ P A E ++
Sbjct: 122 DRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTY 181
Query: 1182 GINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWL 1241
+ + + + +I Q Q + + + +I + + L + E E K
Sbjct: 182 -LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 240
Query: 1242 IETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKR 1289
+ + + +N R Q ++ + QE+ +L+ E +KE R
Sbjct: 241 YQ-EHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 436
Score = 33.3 bits (75), Expect = 0.29
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 1159 ELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTE 1218
++I + +AR+A + + + + + ++ ++ I N DL
Sbjct: 4 SSQQIAK-------NARKAGNILKTISNEGRSDILYKIHDALKANAHAIEE-ANKIDLAV 55
Query: 1219 EPKAKLSK 1226
+ L+
Sbjct: 56 AKETGLAD 63
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase
{Escherichia coli [TaxId: 562]}
Length = 77
Score = 29.3 bits (66), Expect = 0.83
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 542 LRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQ 581
+L K R IA + + V + L++MA+ +P
Sbjct: 7 FAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITAS 46
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 30.4 bits (68), Expect = 1.6
Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 702 TSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLK 761
+ + + + EK + A + + +K E V+ + + L
Sbjct: 150 GTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKAL-LEVVQSGGKNIELA 208
Query: 762 QIKSEEKVEM-EKEKRKKILREREEEKEEQPAMKK 795
++ ++ +++ E+ +K + E E+EKEE K+
Sbjct: 209 VMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 29.5 bits (66), Expect = 1.7
Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 1185 NIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEEPKAKLSKEIAVPESEAEFKAWLIET 1244
N + + + IN++ +K+KA+ I Y + + E + V E + ++E
Sbjct: 10 NSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGK---DPMEVFEQALKNVMPVLEV 66
Query: 1245 KKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKEKRD 1290
+ +R A Q ++ R + +R + + AR
Sbjct: 67 RARR-----VGGANYQVPVEVRPDRRVSLG--LRWLVQYARLRNEK 105
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga
maritima [TaxId: 2336]}
Length = 414
Score = 30.8 bits (68), Expect = 1.7
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 1159 ELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTE 1218
EL E + REA+ + ++ NK+I ++ +K+++ + +I+ N + E
Sbjct: 2 ELLEKAK-------KVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRID--VE 52
Query: 1219 EPKAKLSKEIAVPESEAEFKAWLIETKKKRAYIID 1253
+ + + V ES + L K+ +I
Sbjct: 53 KARER-----GVKESLVD---RLALNDKRIDEMIK 79
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.4 bits (69), Expect = 1.8
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 762 QIKSEEKVEMEKEKRKKILREREEEKEE 789
Q++ E+K ++ +++K+I ERE+ +E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
{Escherichia coli [TaxId: 562]}
Length = 61
Score = 27.7 bits (62), Expect = 2.2
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1241 LIETKKKRAYIIDKKNARKQRRQDLAKRRTAAAQERMRLISELARKE 1287
L + K + II++ A K+R Q L + + A QER +++ A+ E
Sbjct: 4 LKKAKAEAQVIIEQ--ANKRRSQILDEAKAEAEQERTKIV-AQAQAE 47
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus
halodurans [TaxId: 86665]}
Length = 415
Score = 29.9 bits (67), Expect = 3.3
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 25/124 (20%)
Query: 1290 DDDFGMRDEDWDVYKVINKDAGDTDSEEEQERLIE-LEEILRQHDPEFTSLNQEQELSPK 1348
D ++ + D +E + + L + + + DP + +++ S
Sbjct: 171 DPLLNEYEQTKHRLRDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMAVSLPPTFSFP 230
Query: 1349 EAN---------------------QLHIGVERMCGPECLFQPSMLGSIQAGISETLNFVL 1387
E + + IGV++ P +G + + +L
Sbjct: 231 EESNRGRIIRDCLLPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASM---DGVEHLL 287
Query: 1388 NSYP 1391
YP
Sbjct: 288 REYP 291
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 30.2 bits (67), Expect = 3.5
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 706 ETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKS 765
+ RF K + E K + + E+ +
Sbjct: 636 NLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY 695
Query: 766 EEKVEM-----EKEKRKKILREREEEKEEQPAMKKIKVEK 800
E + M KE+ +K+L++++E++ E + K+ +
Sbjct: 696 EYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKD 735
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent
helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 27.5 bits (61), Expect = 4.6
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 532 ALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDI 580
A Q +L + R + A D + N +L+ MA+ P +
Sbjct: 6 AQEQETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTV 54
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus
subtilis [TaxId: 1423]}
Length = 109
Score = 27.7 bits (61), Expect = 5.0
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 1157 LLELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEK 1202
L E++E+++ D A ++ K + + Q +++ I + + +
Sbjct: 62 LDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS 107
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.3 bits (63), Expect = 5.3
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 710 QRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKV 769
+R + E K + EK + E +K +E + K ++E
Sbjct: 57 RRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLA-------QKMESNKENR 109
Query: 770 EMEKEKRKKILREREEEKEE 789
E + L+E+++ EE
Sbjct: 110 EAHLAAMLERLQEKDKHAEE 129
>d1g03a_ a.73.1.1 (A:) HTLV-I capsid protein {Human T-cell leukemia
virus type 1 [TaxId: 11908]}
Length = 134
Score = 28.1 bits (62), Expect = 5.6
Identities = 18/116 (15%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 527 IFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFA- 585
+ H N + + +++L + +++ S ++ + +Q +D+Q +
Sbjct: 2 VMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQY 61
Query: 586 CCNPVPQTVKEHVLDIHAIILKARLQSLT--KP------VEKLQPSLDGMKKKQQQ 633
C+ + ++ H + ++I +A + +T P V+ P G++++ QQ
Sbjct: 62 LCSSLVASL--HHQQLDSLISEAETRGITSYNPLAGPLRVQANNPQQQGLRREYQQ 115
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.5 bits (64), Expect = 6.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 764 KSEEKVEMEKEKRKKILREREEEKEE 789
++E + +M KE++ KI E E+ +E
Sbjct: 112 QTEARKQMSKEEKLKIKEENEKLLKE 137
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 27.4 bits (61), Expect = 6.8
Identities = 10/96 (10%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 1132 AKKLVEMNAKKREERLVDDERHLNELLELREIVEL--------TPSDHSHAREAFKSMGI 1183
A KL++ ++ ++R+ + +N + E+ V+L + +
Sbjct: 2 ANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSS------E 55
Query: 1184 NNIQDLNKSINQLQQKIEKTKAKIIAYNNGEDLTEE 1219
+ +++L + +++ + + + ++ E
Sbjct: 56 DLMKELYQRCERMRPTLFR---LASDTEDNDEALAE 88
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 28.3 bits (62), Expect = 9.1
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 1122 EQQKDRRKELAKKLVEMNAKKREERLVDDERHLNELLELR 1161
EQQ + ++L + N +++ N +++LR
Sbjct: 13 EQQAAELETCKEQLFQSNMERK--------ELHNTVMDLR 44
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 26.4 bits (58), Expect = 9.5
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1152 RHLNELL-ELREIVELTPSDHSHAREAFKSMGINNIQDLNKSINQLQQKIEKTKAKI 1207
HL L +L+ +V L P H + + +I+ L S + +I++ + +
Sbjct: 14 AHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQ 70
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 257
Score = 28.2 bits (63), Expect = 9.7
Identities = 15/92 (16%), Positives = 31/92 (33%)
Query: 254 NSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQA 313
+ E+LF L P+ A + + + L++ D Q+
Sbjct: 68 DRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQS 127
Query: 314 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAI 345
P S +++T+ E++ L I +
Sbjct: 128 WPESVIKAIVVTDGERILGLGDLGCYGMGIPV 159
Score = 28.2 bits (63), Expect = 9.7
Identities = 15/92 (16%), Positives = 31/92 (33%)
Query: 1699 NSYEQLFEPKLKEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQA 1758
+ E+LF L P+ A + + + L++ D Q+
Sbjct: 68 DRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQS 127
Query: 1759 LPLSDTPLMMITEPEQVTQLVSELKQQQEIAI 1790
P S +++T+ E++ L I +
Sbjct: 128 WPESVIKAIVVTDGERILGLGDLGCYGMGIPV 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 7,202,530
Number of extensions: 352722
Number of successful extensions: 1205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1168
Number of HSP's successfully gapped: 82
Length of query: 1973
Length of database: 2,407,596
Length adjustment: 99
Effective length of query: 1874
Effective length of database: 1,048,326
Effective search space: 1964562924
Effective search space used: 1964562924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.4 bits)