Query psy15184
Match_columns 160
No_of_seqs 171 out of 404
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:45:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qlv_B Protein SIP2, protein S 100.0 2.5E-53 8.7E-58 354.6 11.0 151 1-160 44-252 (252)
2 2v8q_B 5'-AMP-activated protei 100.0 2.8E-39 9.5E-44 231.8 7.4 86 75-160 2-87 (87)
3 2qrd_B SPCC1919.03C protein; A 100.0 9.3E-39 3.2E-43 233.0 5.1 89 72-160 2-95 (97)
4 3t4n_B SNF1 protein kinase sub 100.0 8.9E-35 3.1E-39 216.9 0.5 72 89-160 34-110 (113)
5 1z0n_A 5'-AMP-activated protei 99.5 3.1E-14 1.1E-18 102.4 5.3 49 2-59 48-96 (96)
6 3nme_A Ptpkis1 protein, SEX4 g 99.4 2.3E-13 7.8E-18 114.4 5.1 46 1-54 210-255 (294)
7 4aee_A Alpha amylase, catalyti 98.4 1.6E-07 5.5E-12 86.4 3.8 43 1-49 58-102 (696)
8 4aef_A Neopullulanase (alpha-a 97.3 0.00015 5.1E-09 65.8 3.6 27 1-27 55-81 (645)
9 2z0b_A GDE5, KIAA1434, putativ 90.7 0.14 4.7E-06 37.9 2.6 15 2-16 60-75 (131)
10 3c8d_A Enterochelin esterase; 82.6 0.7 2.4E-05 39.1 2.8 48 2-57 83-155 (403)
11 1ac0_A Glucoamylase; hydrolase 70.0 1.2 4E-05 31.3 0.6 16 2-17 58-74 (108)
12 1igd_A Protein G; immunoglobul 69.3 1.6 5.5E-05 28.6 1.1 11 16-26 44-54 (61)
13 1mhx_A Immunoglobulin-binding 68.1 1.7 5.9E-05 28.5 1.0 11 16-26 48-58 (65)
14 3fil_A Immunoglobulin G-bindin 67.8 1.3 4.6E-05 28.4 0.4 11 16-26 39-49 (56)
15 2khu_A Immunoglobulin G-bindin 66.1 1.2 4.2E-05 32.2 0.0 11 16-26 39-49 (108)
16 1ew4_A CYAY protein; friedreic 64.0 4.9 0.00017 28.7 2.9 18 8-26 67-84 (106)
17 2r9f_A Calpain-1 catalytic sub 62.5 5.3 0.00018 33.7 3.3 22 6-28 120-144 (339)
18 2rpv_A Immunoglobulin G-bindin 59.5 3.1 0.0001 28.2 1.0 11 16-26 58-68 (75)
19 4gln_D D-RFX001; heterochiral 59.3 3.2 0.00011 26.7 1.0 13 14-26 36-49 (56)
20 2nqa_A Calpain 8; calpain, cal 56.8 5.5 0.00019 33.3 2.4 22 6-28 115-139 (326)
21 1ziv_A Calpain 9; cysteine pro 55.3 5.9 0.0002 33.4 2.3 22 6-28 119-143 (339)
22 1pgx_A Protein G; immunoglobul 55.3 3.2 0.00011 28.6 0.5 11 16-26 52-62 (83)
23 3oeq_A Frataxin homolog, mitoc 52.6 7.1 0.00024 28.9 2.1 19 7-26 86-104 (123)
24 3t3l_A Frataxin, mitochondrial 48.4 9.7 0.00033 28.2 2.3 19 7-26 80-98 (129)
25 3bow_A Calpain-2 catalytic sub 45.3 14 0.00047 33.9 3.3 23 6-29 135-160 (714)
26 3bwu_D FIMD, outer membrane us 45.0 16 0.00056 25.9 3.0 22 5-26 28-49 (125)
27 3n08_A Putative phosphatidylet 43.7 11 0.00037 28.5 2.0 11 6-16 104-114 (153)
28 1qxp_A MU-like calpain; M-calp 41.4 17 0.00058 33.9 3.3 23 6-29 135-160 (900)
29 2wan_A Pullulanase; hydrolase, 38.9 10 0.00036 36.0 1.4 19 3-21 203-221 (921)
30 1xbr_A Protein (T protein); co 38.7 13 0.00045 28.9 1.8 19 7-26 57-75 (184)
31 2jox_A Churchill protein; zinc 34.8 16 0.00056 26.3 1.6 13 9-21 69-81 (106)
32 1zxh_A Immunoglobulin G bindin 32.8 11 0.00037 24.4 0.3 11 16-26 39-49 (56)
33 1pn5_A Nacht-, LRR- and PYD-co 30.8 10 0.00036 29.2 0.0 11 16-26 39-49 (159)
34 3axy_A Protein heading DATE 3A 25.5 33 0.0011 25.9 2.0 11 6-16 116-126 (170)
35 1h6f_A T-box transcription fac 24.5 32 0.0011 26.9 1.8 18 7-25 60-77 (193)
36 1nh2_D Transcription initiatio 24.0 48 0.0017 24.3 2.6 17 9-26 65-81 (121)
37 2x6u_A T-box transcription fac 23.9 33 0.0011 27.0 1.8 19 7-26 61-79 (203)
38 1fjj_A Hypothetical 17.1 kDa p 23.8 36 0.0012 25.5 1.9 16 6-24 110-126 (159)
39 2evv_A Hypothetical protein HP 23.7 36 0.0012 26.9 2.0 11 6-16 152-162 (207)
40 1wko_A Terminal flower 1 prote 22.6 40 0.0014 25.6 2.0 11 6-16 120-130 (180)
41 4b0m_A F1 capsule-anchoring pr 22.3 62 0.0021 23.5 2.9 21 6-26 28-48 (136)
42 2chc_A Protein RV3472; hypothe 22.2 61 0.0021 23.0 2.9 20 7-26 108-128 (170)
43 3ui3_A Immunoglobulin G-bindin 21.1 21 0.0007 27.6 0.0 11 16-26 39-49 (160)
No 1
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=100.00 E-value=2.5e-53 Score=354.58 Aligned_cols=151 Identities=34% Similarity=0.562 Sum_probs=93.0
Q ss_pred CEEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEEcccCChhhhhh-------------------
Q psy15184 1 MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA------------------- 61 (160)
Q Consensus 1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~d~e~~~a------------------- 61 (160)
+++.||+|.|+|||+|||+|++|++. + ++.|+.|+.||+|+|.+.+....+.
T Consensus 44 ~tv~LppG~y~YKFiVDG~w~~Dp~~-p--------~~~d~~G~~nNvi~V~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 114 (252)
T 2qlv_B 44 VKLRLLPGTHRFRFIVDNELRVSDFL-P--------TATDQMGNFVNYIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSS 114 (252)
T ss_dssp EEEEECSEEEEEEEEETTEEECCTTS-C--------EEBCSSCCCEEEEEECC---------------------------
T ss_pred EEEECCCCEEEEEEEECCEEEeCCCC-C--------EEecCCCcCcceeeccCccccccccccccccccccccccccccc
Confidence 36899999999999999999999999 7 8999999999999999854222110
Q ss_pred ----cccCCC-----------CCCCCCCCCCcccCCCCCC-------------------CCCCCCCCCCCcccccccCCC
Q psy15184 62 ----LDVDSQ-----------DTTPKKDDEYSQVIPPSKP-------------------WEKQPGPPILPPHLLQVILNK 107 (160)
Q Consensus 62 ----l~~ds~-----------~~~~~~~~~Y~~eip~~~~-------------------~~k~~~PP~LPphL~~~iLN~ 107 (160)
+.++.+ +.+.++.++|+|+||..+. ...++.||+|||||+++|||+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~y~~eiP~~~~~~~~~e~~~~~~d~~~~~~~~~~~~PP~LPphL~~~iLN~ 194 (252)
T 2qlv_B 115 IALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNK 194 (252)
T ss_dssp -------------------------------CCCCCGGGTCHHHHHHHHHHHCC-----------CCCCCCC--------
T ss_pred cccccccCccccccccccccccCCCCCcccccccCCchhcccchhhhhhhcccccccccccccCCCCCCChhhcchhcCC
Confidence 111100 2234568899999998521 113468999999999999999
Q ss_pred CCCC-----CCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeEecceeEEEEEeeeC
Q psy15184 108 DTPL-----SCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160 (160)
Q Consensus 108 ~~~~-----~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~Ry~~KyvT~vlYkp~ 160 (160)
++++ .|++++||+|+||||||||++|||+||||||||||||+||||||||||+
T Consensus 195 ~~~~~~~~~~~~~~~Lp~PnHVvLNHL~~~sIk~~vlal~~T~RYk~KyVTtvlYkP~ 252 (252)
T 2qlv_B 195 YYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPI 252 (252)
T ss_dssp --------------------CCSCCBCEECCCCSSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCccccccccCCcccCCCCCEEEeeeEEEecccCCEEEEeeeeeecceeEEEEEEeeC
Confidence 8765 3789999999999999999999999999999999999999999999997
No 2
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*
Probab=100.00 E-value=2.8e-39 Score=231.79 Aligned_cols=86 Identities=73% Similarity=1.156 Sum_probs=70.6
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeEecceeEEE
Q psy15184 75 DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTT 154 (160)
Q Consensus 75 ~~Y~~eip~~~~~~k~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~Ry~~KyvT~ 154 (160)
++|+|++|...++++++.||.|||||+++|||++++.+||++.||+|+||+|||||++|||++++|+|+|||||+||||+
T Consensus 2 ~~y~q~~~~~~~~~~~k~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~sik~~v~alg~T~Ry~~KyVT~ 81 (87)
T 2v8q_B 2 GPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTT 81 (87)
T ss_dssp ---CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECCCBTTEEEEEEEEEETTEEEEE
T ss_pred CcccccCCCCCccccccCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeEEEecccCCeEEEeeeeeecceeEEE
Confidence 47999999998888888899999999999999988888999999999999999999999999999999999999999999
Q ss_pred EEeeeC
Q psy15184 155 LLYKPI 160 (160)
Q Consensus 155 vlYkp~ 160 (160)
|||||+
T Consensus 82 vlYkP~ 87 (87)
T 2v8q_B 82 LLYKPI 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEeeC
Confidence 999997
No 3
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B*
Probab=100.00 E-value=9.3e-39 Score=233.02 Aligned_cols=89 Identities=46% Similarity=0.783 Sum_probs=80.7
Q ss_pred CCCCCCcccCCCCC---CCC--CCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeE
Q psy15184 72 KKDDEYSQVIPPSK---PWE--KQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHR 146 (160)
Q Consensus 72 ~~~~~Y~~eip~~~---~~~--k~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~R 146 (160)
++.++|+||||... .++ +++.||.|||||+++|||++++++||++.||+|+||+|||||++|||++++|+|+|||
T Consensus 2 ~~~~~y~~eIP~~~~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~sik~~vlalg~T~R 81 (97)
T 2qrd_B 2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTR 81 (97)
T ss_dssp --CCCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEECCSSSSEEEEEEEE
T ss_pred CccccccccCChhhhcccccccccCCCCCCChhhcccccCCCCCCCCCcccCCCCCEEEeeeeeeecccCCeEEEeeeee
Confidence 46788999999986 455 7788999999999999999888778999999999999999999999999999999999
Q ss_pred ecceeEEEEEeeeC
Q psy15184 147 YRKKYVTTLLYKPI 160 (160)
Q Consensus 147 y~~KyvT~vlYkp~ 160 (160)
||+||||+|||||+
T Consensus 82 y~~KyVT~vlYkP~ 95 (97)
T 2qrd_B 82 YHRKYVTTAMFKNF 95 (97)
T ss_dssp ETTEEEEEEEEECC
T ss_pred eeceeEEEEEEecC
Confidence 99999999999996
No 4
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B*
Probab=100.00 E-value=8.9e-35 Score=216.86 Aligned_cols=72 Identities=47% Similarity=0.749 Sum_probs=65.9
Q ss_pred CCCCCCCCCcccccccCCCCCCC-----CCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeEecceeEEEEEeeeC
Q psy15184 89 KQPGPPILPPHLLQVILNKDTPL-----SCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160 (160)
Q Consensus 89 k~~~PP~LPphL~~~iLN~~~~~-----~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~Ry~~KyvT~vlYkp~ 160 (160)
+++.||.|||||+++|||+++.. .|+++.||+|+||+|||||++|||++++|+|+|||||+||||+|||||+
T Consensus 34 ~~~~PP~LPphL~~~iLN~~~~~~~~~~~d~~~~Lp~P~HVvLNHLy~~sik~~vlalg~T~RYk~KyVT~VlYKP~ 110 (113)
T 3t4n_B 34 SWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPI 110 (113)
T ss_dssp GGGSCCBCCGGGCHHHHHHHHHHHHHHHHHCCSCCCCCCGGGTTBCEECCCBTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred cCCCCCCCChhhcccccCCCccccccccCCCcccCCCCCeEeeeeeeeecccCceEEEeeeeeeeceeEEEEEEeec
Confidence 45789999999999999986432 3678999999999999999999999999999999999999999999996
No 5
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=99.48 E-value=3.1e-14 Score=102.38 Aligned_cols=49 Identities=61% Similarity=1.133 Sum_probs=45.1
Q ss_pred EEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEEcccCChhhh
Q psy15184 2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF 59 (160)
Q Consensus 2 i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~d~e~~ 59 (160)
++.|++|.|+|||+|||+|++||.. + ++.|+.|+.||+|+|.++++++|
T Consensus 48 ~v~l~~G~~~YKf~VdG~~~~DP~~-~--------~~~d~~G~~Nnvi~V~~~d~~~~ 96 (96)
T 1z0n_A 48 ILDLPEGEHQYKFFVDGQWTHDPSE-P--------IVTSQLGTVNNIIQVKKTDFEVF 96 (96)
T ss_dssp EEEECSEEEEEEEEETTEEECCTTS-C--------EEECTTSCEEEEEEECSCTTEEC
T ss_pred EEEccCCCEEEEEEECCeEEcCCCC-C--------eEECCCCCEeEEEEEcCCCcCcC
Confidence 5689999999999999999999999 7 78999999999999999888754
No 6
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=99.38 E-value=2.3e-13 Score=114.38 Aligned_cols=46 Identities=41% Similarity=0.723 Sum_probs=40.9
Q ss_pred CEEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEEcccC
Q psy15184 1 MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKT 54 (160)
Q Consensus 1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~ 54 (160)
+++.||+|.|+|||+|||+|++|++. +. +..|++|+.||+|.|.+.
T Consensus 210 ~~~~L~~G~y~YkFiVDG~w~~d~~~-~~-------~~~d~~G~~nn~~~v~~~ 255 (294)
T 3nme_A 210 LKRELPEGQFEYKYIIDGEWTHNEAE-PF-------IGPNKDGHTNNYAKVVDD 255 (294)
T ss_dssp EEEEECSEEEEEEEEETTEEECCTTS-CE-------ECSCTTSCCEEEEEECCC
T ss_pred EEEECCCceEEEEEEECCEEeeCCCC-Ce-------eeECCCCCEeEEEEECCC
Confidence 36899999999999999999999999 51 457999999999999973
No 7
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=98.38 E-value=1.6e-07 Score=86.36 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=35.8
Q ss_pred CEEecCCceEEEEEEECCEEE--ECCCCccccccccCceeeCCCCCcceEE
Q psy15184 1 MIIDLPEGEHEYKFLVDGEWK--VNPQEVKCIAFLVSPVQENKLGSKNNKL 49 (160)
Q Consensus 1 ~i~~Lp~G~h~ykFiVDG~w~--~~~~~~p~~~~~~~p~~~d~~G~~nN~i 49 (160)
++++||||+|||||+|||+|+ +|++. +... .+.|++|..|++.
T Consensus 58 ~~~~L~~g~~~y~f~vdg~~~~~~d~~~-~~~~-----y~~~~~g~~n~~~ 102 (696)
T 4aee_A 58 VYLKLWPGEYGYGFQIDNDFENVLDPDN-EEKK-----CVHTSFFPEYKKC 102 (696)
T ss_dssp EEEEECSEEEEEEEEETTCCSCCCCTTC-CCEE-----EEECSSCTTSEEE
T ss_pred EEEEcCCceEEEEEEECCEEeecCCCCC-Cccc-----ccccCCcccccee
Confidence 479999999999999999999 77888 4211 3689999999984
No 8
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=97.25 E-value=0.00015 Score=65.79 Aligned_cols=27 Identities=37% Similarity=0.802 Sum_probs=24.4
Q ss_pred CEEecCCceEEEEEEECCEEEECCCCc
Q psy15184 1 MIIDLPEGEHEYKFLVDGEWKVNPQEV 27 (160)
Q Consensus 1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~ 27 (160)
+.++||||+|+|||+|||+|..|+..+
T Consensus 55 ~~v~L~~G~y~Y~f~vdg~~~~dp~n~ 81 (645)
T 4aef_A 55 IKIALPEGVWHYAFSIDGKFVLDPDNP 81 (645)
T ss_dssp EEEEECSEEEEEEEEETTEEECCTTCC
T ss_pred EEEEeCCceEEEEEEECCeEecCCCCC
Confidence 368999999999999999999998873
No 9
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=90.67 E-value=0.14 Score=37.94 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=13.3
Q ss_pred EEecCCce-EEEEEEE
Q psy15184 2 IIDLPEGE-HEYKFLV 16 (160)
Q Consensus 2 i~~Lp~G~-h~ykFiV 16 (160)
.++||.|. ++|||++
T Consensus 60 ~v~lp~~~~~eYKyvi 75 (131)
T 2z0b_A 60 TIVLSRGVSVQYRYFK 75 (131)
T ss_dssp EEEECTTCCEEEEEEE
T ss_pred EEEcCCCCcEEEEEEE
Confidence 57899995 9999999
No 10
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*
Probab=82.62 E-value=0.7 Score=39.12 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=35.7
Q ss_pred EEecCCceE-EEEEEEC------------------------CEEEECCCCccccccccCceeeCCCCCcceEEEcccCCh
Q psy15184 2 IIDLPEGEH-EYKFLVD------------------------GEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDF 56 (160)
Q Consensus 2 i~~Lp~G~h-~ykFiVD------------------------G~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~d~ 56 (160)
++.||+|-| .|+|+|| |..+.||..+. ...+..|...+++++.+...
T Consensus 83 t~~l~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~--------~~~~~~~~~~s~~~~p~~~~ 154 (403)
T 3c8d_A 83 TTQLNANWRGSYCFIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQ--------SWKGGLGHAVSALEMPQAPL 154 (403)
T ss_dssp EEEEETTCEEEEEEEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSS--------EECCSSSSCEEEEECTTCCC
T ss_pred EEEECCCcEEEEEEEecCcccccccccchHHHHHHHHHHhhcccccCCCCCC--------CCCCCCCcccccccCCCCCc
Confidence 458999999 9999999 66677777722 23344588889999987654
Q ss_pred h
Q psy15184 57 E 57 (160)
Q Consensus 57 e 57 (160)
+
T Consensus 155 ~ 155 (403)
T 3c8d_A 155 Q 155 (403)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=70.04 E-value=1.2 Score=31.26 Aligned_cols=16 Identities=50% Similarity=0.891 Sum_probs=13.7
Q ss_pred EEecCCce-EEEEEEEC
Q psy15184 2 IIDLPEGE-HEYKFLVD 17 (160)
Q Consensus 2 i~~Lp~G~-h~ykFiVD 17 (160)
.++||.|. ++|||+|.
T Consensus 58 ~v~lp~~~~~eYKy~v~ 74 (108)
T 1ac0_A 58 TVTLPAGESFEYKFIRI 74 (108)
T ss_dssp EECCCSSSCEECCCEEC
T ss_pred EEEeCCCCeEEEEEEEE
Confidence 57899995 99999994
No 12
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=69.33 E-value=1.6 Score=28.62 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=9.6
Q ss_pred ECCEEEECCCC
Q psy15184 16 VDGEWKVNPQE 26 (160)
Q Consensus 16 VDG~w~~~~~~ 26 (160)
|||+|.+|+.-
T Consensus 44 vdgew~yd~at 54 (61)
T 1igd_A 44 VDGVWTYDDAT 54 (61)
T ss_dssp CCCEEEEETTT
T ss_pred CCceEeecCce
Confidence 69999999876
No 13
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=68.09 E-value=1.7 Score=28.49 Aligned_cols=11 Identities=45% Similarity=0.993 Sum_probs=9.9
Q ss_pred ECCEEEECCCC
Q psy15184 16 VDGEWKVNPQE 26 (160)
Q Consensus 16 VDG~w~~~~~~ 26 (160)
|||+|.+|+.-
T Consensus 48 vdgeWsYD~AT 58 (65)
T 1mhx_A 48 VDGEWTYDDAA 58 (65)
T ss_dssp CCSEEEEETTT
T ss_pred CccEEEecCce
Confidence 69999999886
No 14
>3fil_A Immunoglobulin G-binding protein G; dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding; HET: FME; 0.88A {Streptococcus SP} SCOP: d.15.7.1 PDB: 2qmt_A 2jsv_X 2ju6_X 2k0p_A 2kq4_X 2kwd_A 2lgi_A 2gi9_A 1gb1_A 1pga_A 1pgb_A 2gb1_A 3gb1_A 2klk_A 2rmm_A 2onq_A 2on8_A 2j52_A 2j53_A 3v3x_A* ...
Probab=67.80 E-value=1.3 Score=28.41 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=9.4
Q ss_pred ECCEEEECCCC
Q psy15184 16 VDGEWKVNPQE 26 (160)
Q Consensus 16 VDG~w~~~~~~ 26 (160)
|||+|.+|+.-
T Consensus 39 vdgeW~YD~AT 49 (56)
T 3fil_A 39 VDGEWTYDDAT 49 (56)
T ss_dssp CCCEEEEEGGG
T ss_pred CccEEEecCce
Confidence 69999999865
No 15
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=66.07 E-value=1.2 Score=32.19 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=0.0
Q ss_pred ECCEEEECCCC
Q psy15184 16 VDGEWKVNPQE 26 (160)
Q Consensus 16 VDG~w~~~~~~ 26 (160)
|||+|.+|+.-
T Consensus 39 vdgew~yd~at 49 (108)
T 2khu_A 39 VDGEWTYDDAT 49 (108)
T ss_dssp -----------
T ss_pred CCceEeecCcc
Confidence 68889888877
No 16
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=63.97 E-value=4.9 Score=28.71 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=14.4
Q ss_pred ceEEEEEEECCEEEECCCC
Q psy15184 8 GEHEYKFLVDGEWKVNPQE 26 (160)
Q Consensus 8 G~h~ykFiVDG~w~~~~~~ 26 (160)
|=|+|+|. ||+|++..+.
T Consensus 67 sG~hfd~~-~~~Wi~~r~g 84 (106)
T 1ew4_A 67 GGYHFDLK-GDEWICDRSG 84 (106)
T ss_dssp CEEEEEEE-TTEEEETTTC
T ss_pred Cceeeeec-CCEEEECCCC
Confidence 33999985 9999988776
No 17
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=62.54 E-value=5.3 Score=33.68 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=18.6
Q ss_pred CCceEEEEEEECCEEE---ECCCCcc
Q psy15184 6 PEGEHEYKFLVDGEWK---VNPQEVK 28 (160)
Q Consensus 6 p~G~h~ykFiVDG~w~---~~~~~~p 28 (160)
+.|.|++||..+|+|+ +|+.+ |
T Consensus 120 ~~G~y~vr~~~~G~W~~VvVDD~L-P 144 (339)
T 2r9f_A 120 YAGIFHFQLWQFGEWVDVVVDDLL-P 144 (339)
T ss_dssp CCSEEEEEEEETTEEEEEEEESCE-E
T ss_pred CCceEEEEEeeCCEEEEEEEcCCC-c
Confidence 4599999999999996 67766 6
No 18
>2rpv_A Immunoglobulin G-binding protein G; lanthanide binding peptide, LBT, paramagnetic effect, olivia, cell WALL, IGG-binding protein; NMR {Streptococcus SP}
Probab=59.54 E-value=3.1 Score=28.17 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=9.0
Q ss_pred ECCEEEECCCC
Q psy15184 16 VDGEWKVNPQE 26 (160)
Q Consensus 16 VDG~w~~~~~~ 26 (160)
|||+|.+|+.-
T Consensus 58 vdgeWsYD~AT 68 (75)
T 2rpv_A 58 VDGEWTYDDAT 68 (75)
T ss_dssp CCSEEEEETTT
T ss_pred CCceEeecCce
Confidence 58899988876
No 19
>4gln_D D-RFX001; heterochiral protein-protein complex, D-protein antagonist, factor-inihibitor complex; HET: DTY DSG DTH DVA DPN DTR DGL DIL DAS; 1.60A {Synthetic} PDB: 4gls_D* 4gls_C*
Probab=59.33 E-value=3.2 Score=26.69 Aligned_cols=13 Identities=15% Similarity=0.596 Sum_probs=10.7
Q ss_pred EEEC-CEEEECCCC
Q psy15184 14 FLVD-GEWKVNPQE 26 (160)
Q Consensus 14 FiVD-G~w~~~~~~ 26 (160)
.-|| |||.+|+.-
T Consensus 36 n~~d~geWtYddaT 49 (56)
T 4gln_D 36 XFSDFDDWTYDDAT 49 (56)
T ss_pred cCCcCCeeEecCcc
Confidence 4578 999999876
No 20
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens}
Probab=56.81 E-value=5.5 Score=33.31 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=18.8
Q ss_pred CCceEEEEEEECCEEE---ECCCCcc
Q psy15184 6 PEGEHEYKFLVDGEWK---VNPQEVK 28 (160)
Q Consensus 6 p~G~h~ykFiVDG~w~---~~~~~~p 28 (160)
+.|.|++||..+|+|+ +|+.+ |
T Consensus 115 ~~G~y~vr~~~~G~w~~VvVDD~l-P 139 (326)
T 2nqa_A 115 YAGIFHFQFWQYGEWVEVVIDDRL-P 139 (326)
T ss_dssp CSSEEEEEEECSSSEEEEEEECCE-E
T ss_pred CCceEEEEEEECCEEEEEEEeCcC-c
Confidence 4599999999999997 67777 6
No 21
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A*
Probab=55.31 E-value=5.9 Score=33.37 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=18.8
Q ss_pred CCceEEEEEEECCEEE---ECCCCcc
Q psy15184 6 PEGEHEYKFLVDGEWK---VNPQEVK 28 (160)
Q Consensus 6 p~G~h~ykFiVDG~w~---~~~~~~p 28 (160)
+.|.|++||..+|+|+ +|+.+ |
T Consensus 119 ~~G~y~~r~~~~G~W~~VvVDD~L-P 143 (339)
T 1ziv_A 119 YAGIFHFQFWQHSEWLDVVIDDRL-P 143 (339)
T ss_dssp CCSEEEEEEECSSSEEEEEEECCE-E
T ss_pred cceEEEEEEeeCCEEEEEEEcCCC-c
Confidence 4699999999999996 67777 6
No 22
>1pgx_A Protein G; immunoglobulin binding protein; 1.66A {Streptococcus} SCOP: d.15.7.1
Probab=55.30 E-value=3.2 Score=28.62 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=9.8
Q ss_pred ECCEEEECCCC
Q psy15184 16 VDGEWKVNPQE 26 (160)
Q Consensus 16 VDG~w~~~~~~ 26 (160)
|||+|.+|+.-
T Consensus 52 vdgeWsYD~AT 62 (83)
T 1pgx_A 52 VDGVWTYDDAT 62 (83)
T ss_dssp CCEEEEEETTT
T ss_pred CCceEeecccc
Confidence 58999999987
No 23
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=52.60 E-value=7.1 Score=28.86 Aligned_cols=19 Identities=26% Similarity=0.692 Sum_probs=16.1
Q ss_pred CceEEEEEEECCEEEECCCC
Q psy15184 7 EGEHEYKFLVDGEWKVNPQE 26 (160)
Q Consensus 7 ~G~h~ykFiVDG~w~~~~~~ 26 (160)
.|-|+|+|. +|+|++..+.
T Consensus 86 SGp~hfd~~-~~~Wi~~r~g 104 (123)
T 3oeq_A 86 SGPNRFDLL-NGEWVSLRNG 104 (123)
T ss_dssp TEEEEEEES-SSSEEETTTC
T ss_pred CCCeeEeec-CCeEEECCCC
Confidence 688999995 8999988775
No 24
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=48.39 E-value=9.7 Score=28.21 Aligned_cols=19 Identities=16% Similarity=0.511 Sum_probs=15.7
Q ss_pred CceEEEEEEECCEEEECCCC
Q psy15184 7 EGEHEYKFLVDGEWKVNPQE 26 (160)
Q Consensus 7 ~G~h~ykFiVDG~w~~~~~~ 26 (160)
.|-|||+|. +|+|++..+.
T Consensus 80 SGp~hfd~~-~~~Wi~~rdg 98 (129)
T 3t3l_A 80 SGPKRYDWT-GKNWVYSHDG 98 (129)
T ss_dssp SCCEEEEEC-SSSEEETTTC
T ss_pred CCCeeeEec-CCEEEECCCC
Confidence 599999985 7899987776
No 25
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=45.28 E-value=14 Score=33.86 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=19.2
Q ss_pred CCceEEEEEEECCEEE---ECCCCccc
Q psy15184 6 PEGEHEYKFLVDGEWK---VNPQEVKC 29 (160)
Q Consensus 6 p~G~h~ykFiVDG~w~---~~~~~~p~ 29 (160)
+.|.|++||..+|+|+ +|+.+ ||
T Consensus 135 ~~G~y~~~~~~~G~w~~VvvDD~l-P~ 160 (714)
T 3bow_A 135 YAGIFHFQFWQYGEWVEVVVDDRL-PT 160 (714)
T ss_dssp CSSEEEEEEEETTEEEEEEEESCE-EE
T ss_pred CceEEEEEEeeCCEEEEEEEeccc-ee
Confidence 3699999999999996 67776 65
No 26
>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal DOM; usher, N-terminal domain, ternary complex with chaperone and subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli} SCOP: b.167.1.1 PDB: 1ze3_D 1zdx_A
Probab=45.00 E-value=16 Score=25.86 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=18.4
Q ss_pred cCCceEEEEEEECCEEEECCCC
Q psy15184 5 LPEGEHEYKFLVDGEWKVNPQE 26 (160)
Q Consensus 5 Lp~G~h~ykFiVDG~w~~~~~~ 26 (160)
.+||+|+..-.|+|+|+-..+.
T Consensus 28 ~~PG~Y~vdI~vN~~~~~~~~i 49 (125)
T 3bwu_D 28 LPPGTYRVDIYLNNGYMATRDV 49 (125)
T ss_dssp SCSEEEEEEEEETTEEEEEEEE
T ss_pred cCCcEEEEEEEECCeEccceEE
Confidence 5799999999999999855433
No 27
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=43.70 E-value=11 Score=28.45 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=9.5
Q ss_pred CCceEEEEEEE
Q psy15184 6 PEGEHEYKFLV 16 (160)
Q Consensus 6 p~G~h~ykFiV 16 (160)
|.|.|||.|.|
T Consensus 104 P~g~HrY~F~v 114 (153)
T 3n08_A 104 PDAKHRYYFYA 114 (153)
T ss_dssp SSSCEEEEEEE
T ss_pred cCCCEEEEEEE
Confidence 57889999987
No 28
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Probab=41.37 E-value=17 Score=33.88 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.1
Q ss_pred CCceEEEEEEECCEEE---ECCCCccc
Q psy15184 6 PEGEHEYKFLVDGEWK---VNPQEVKC 29 (160)
Q Consensus 6 p~G~h~ykFiVDG~w~---~~~~~~p~ 29 (160)
+.|.|++||..+|+|+ +|+.+ ||
T Consensus 135 ~~G~y~~~~~~~G~w~~V~vDD~l-P~ 160 (900)
T 1qxp_A 135 YAGIFHFQLWQFGEWVDVVVDDLL-PT 160 (900)
T ss_dssp CSSEEEEEEEETTEEEEEEEESCB-CE
T ss_pred cCceEEEEEeECCEEEEEEECCcc-cc
Confidence 3599999999999996 67777 65
No 29
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=38.94 E-value=10 Score=35.98 Aligned_cols=19 Identities=37% Similarity=0.775 Sum_probs=16.9
Q ss_pred EecCCceEEEEEEECCEEE
Q psy15184 3 IDLPEGEHEYKFLVDGEWK 21 (160)
Q Consensus 3 ~~Lp~G~h~ykFiVDG~w~ 21 (160)
-.||+|.|+||+.++|.|.
T Consensus 203 ~~l~~g~y~~kv~~~~~w~ 221 (921)
T 2wan_A 203 GTLPAGTYQYKIALDHSWN 221 (921)
T ss_dssp EEECSEEEEEEEEETTSSS
T ss_pred eccCCcceeEEEeecCccc
Confidence 4799999999999998883
No 30
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=38.69 E-value=13 Score=28.91 Aligned_cols=19 Identities=32% Similarity=0.809 Sum_probs=15.0
Q ss_pred CceEEEEEEECCEEEECCCC
Q psy15184 7 EGEHEYKFLVDGEWKVNPQE 26 (160)
Q Consensus 7 ~G~h~ykFiVDG~w~~~~~~ 26 (160)
...++||| ++|+|..+...
T Consensus 57 ~D~~ryk~-~~~~W~~~gka 75 (184)
T 1xbr_A 57 ADNHRWKY-VNGEWVPGGKP 75 (184)
T ss_dssp SSSCEEEE-ETTEEEEESSC
T ss_pred ccCceEEE-ECCcEEEcCcc
Confidence 45799999 79999876554
No 31
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=34.84 E-value=16 Score=26.32 Aligned_cols=13 Identities=38% Similarity=0.813 Sum_probs=10.7
Q ss_pred eEEEEEEECCEEE
Q psy15184 9 EHEYKFLVDGEWK 21 (160)
Q Consensus 9 ~h~ykFiVDG~w~ 21 (160)
.|+|+|-|+|.++
T Consensus 69 ~HeYtF~V~~~yQ 81 (106)
T 2jox_A 69 RHEYTFSIMDEFQ 81 (106)
T ss_dssp EEEEEEEEETTEE
T ss_pred eeeEEEEEecCee
Confidence 6999999987654
No 32
>1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP}
Probab=32.83 E-value=11 Score=24.37 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=9.6
Q ss_pred ECCEEEECCCC
Q psy15184 16 VDGEWKVNPQE 26 (160)
Q Consensus 16 VDG~w~~~~~~ 26 (160)
|||+|.+|+.-
T Consensus 39 ~dg~w~yd~at 49 (56)
T 1zxh_A 39 VQGVWTYDDAT 49 (56)
T ss_dssp TTSEECCCTTT
T ss_pred ccceeecccce
Confidence 58999999876
No 33
>1pn5_A Nacht-, LRR- and PYD-containing protein 2; alpha-helix bundle, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=30.76 E-value=10 Score=29.19 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=0.0
Q ss_pred ECCEEEECCCC
Q psy15184 16 VDGEWKVNPQE 26 (160)
Q Consensus 16 VDG~w~~~~~~ 26 (160)
|||+|.+|+.-
T Consensus 39 ~~~~~~~~~~~ 49 (159)
T 1pn5_A 39 VDGEWTYDDAT 49 (159)
T ss_dssp -----------
T ss_pred CCceeeccccc
Confidence 79999999988
No 34
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=25.55 E-value=33 Score=25.89 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=9.6
Q ss_pred CCceEEEEEEE
Q psy15184 6 PEGEHEYKFLV 16 (160)
Q Consensus 6 p~G~h~ykFiV 16 (160)
|.|.|||-|+|
T Consensus 116 p~G~HRY~f~l 126 (170)
T 3axy_A 116 TMGIHRLVFVL 126 (170)
T ss_dssp CSSCEEEEEEE
T ss_pred CCCcEEEEEEE
Confidence 46899999997
No 35
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=24.51 E-value=32 Score=26.89 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=13.7
Q ss_pred CceEEEEEEECCEEEECCC
Q psy15184 7 EGEHEYKFLVDGEWKVNPQ 25 (160)
Q Consensus 7 ~G~h~ykFiVDG~w~~~~~ 25 (160)
...++||| .+|+|..+..
T Consensus 60 ~d~~rykf-~~~~W~~~gk 77 (193)
T 1h6f_A 60 ADDCRYKF-HNSRWMVAGK 77 (193)
T ss_dssp EEEEEEEE-ETTEEEEEEE
T ss_pred ccCceeec-cCCcEEECcc
Confidence 34799998 6999986543
No 36
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=24.01 E-value=48 Score=24.32 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=12.7
Q ss_pred eEEEEEEECCEEEECCCC
Q psy15184 9 EHEYKFLVDGEWKVNPQE 26 (160)
Q Consensus 9 ~h~ykFiVDG~w~~~~~~ 26 (160)
-+.|||+ ||.|+.-=..
T Consensus 65 L~tYrfc-DnVWtfilkd 81 (121)
T 1nh2_D 65 LDTYGFC-DDVWTFIVKN 81 (121)
T ss_dssp EEEEEEE-TTEEEEEEEE
T ss_pred ecccccc-CcEEEEEEec
Confidence 4789997 9999865444
No 37
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=23.94 E-value=33 Score=27.05 Aligned_cols=19 Identities=37% Similarity=0.907 Sum_probs=14.2
Q ss_pred CceEEEEEEECCEEEECCCC
Q psy15184 7 EGEHEYKFLVDGEWKVNPQE 26 (160)
Q Consensus 7 ~G~h~ykFiVDG~w~~~~~~ 26 (160)
...++||| .+|+|..+...
T Consensus 61 ~D~~rykf-~~~~W~~~gka 79 (203)
T 2x6u_A 61 ADDHRYKF-ADNKWSVTGKA 79 (203)
T ss_dssp EEEEEEEE-ETTEEEEEEEC
T ss_pred ccCceeEE-eCCcEeECccc
Confidence 35799998 59999865433
No 38
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=23.83 E-value=36 Score=25.50 Aligned_cols=16 Identities=38% Similarity=0.765 Sum_probs=11.8
Q ss_pred CCc-eEEEEEEECCEEEECC
Q psy15184 6 PEG-EHEYKFLVDGEWKVNP 24 (160)
Q Consensus 6 p~G-~h~ykFiVDG~w~~~~ 24 (160)
|.| .|||.|.| +..+.
T Consensus 110 P~g~~HRY~F~l---yald~ 126 (159)
T 1fjj_A 110 PKGETHRYIFTV---HALDI 126 (159)
T ss_dssp STTCCEEEEEEE---EEESS
T ss_pred cCCCceEEEEEE---EEccC
Confidence 568 59999997 55554
No 39
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=23.69 E-value=36 Score=26.91 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=9.4
Q ss_pred CCceEEEEEEE
Q psy15184 6 PEGEHEYKFLV 16 (160)
Q Consensus 6 p~G~h~ykFiV 16 (160)
|.|.|||.|.|
T Consensus 152 P~G~HRYvF~v 162 (207)
T 2evv_A 152 PNGDHHYLIQV 162 (207)
T ss_dssp SSSCEEEEEEE
T ss_pred CCCcEEEEEEE
Confidence 56899999987
No 40
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=22.64 E-value=40 Score=25.63 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=9.6
Q ss_pred CCceEEEEEEE
Q psy15184 6 PEGEHEYKFLV 16 (160)
Q Consensus 6 p~G~h~ykFiV 16 (160)
|.|.|||-|+|
T Consensus 120 p~G~HRYvf~l 130 (180)
T 1wko_A 120 SIGIHRFVFVL 130 (180)
T ss_dssp CSSCEEEEEEE
T ss_pred CCCceEEEEEE
Confidence 57899999987
No 41
>4b0m_A F1 capsule-anchoring protein; protein transport, chaperone-usher pathway, PILI assembly; 1.80A {Yersinia pestis} PDB: 4b0e_A
Probab=22.27 E-value=62 Score=23.46 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=17.5
Q ss_pred CCceEEEEEEECCEEEECCCC
Q psy15184 6 PEGEHEYKFLVDGEWKVNPQE 26 (160)
Q Consensus 6 p~G~h~ykFiVDG~w~~~~~~ 26 (160)
.||+|+..-.|+|+|.-..+.
T Consensus 28 ~PG~Y~vdI~vN~~~~~~~~i 48 (136)
T 4b0m_A 28 LPGNYFVNVFVNGRKVDSGNI 48 (136)
T ss_dssp CCEEEEEEEEETTEEEEEEEE
T ss_pred CCcEEEEEEEECCccccceEE
Confidence 379999999999999865544
No 42
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=22.20 E-value=61 Score=23.02 Aligned_cols=20 Identities=25% Similarity=0.743 Sum_probs=15.3
Q ss_pred CceEEEEEE-ECCEEEECCCC
Q psy15184 7 EGEHEYKFL-VDGEWKVNPQE 26 (160)
Q Consensus 7 ~G~h~ykFi-VDG~w~~~~~~ 26 (160)
.|.|...|. .||.|+.....
T Consensus 108 ~g~y~d~~~r~dg~Wri~~r~ 128 (170)
T 2chc_A 108 SGEYQDRLIKQDGQWRIAYRR 128 (170)
T ss_dssp EEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEECCEEEEEEEE
Confidence 466777776 69999987766
No 43
>3ui3_A Immunoglobulin G-binding protein G, virulence-ASS protein D; ferrodoxin-like fold, virulence associated protein D, ribonu RNA binding protein; 2.80A {Streptococcus}
Probab=21.14 E-value=21 Score=27.62 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=9.2
Q ss_pred ECCEEEECCCC
Q psy15184 16 VDGEWKVNPQE 26 (160)
Q Consensus 16 VDG~w~~~~~~ 26 (160)
|||+|.+|..-
T Consensus 39 ~~~~~~~~~~~ 49 (160)
T 3ui3_A 39 VDGEWTYDDAT 49 (160)
T ss_dssp -CEEEEEEGGG
T ss_pred CCceEeecccc
Confidence 89999999887
Done!