RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15184
(160 letters)
>gnl|CDD|218238 pfam04739, AMPKBI, 5'-AMP-activated protein kinase beta subunit,
interation domain. This region is found in the beta
subunit of the 5'-AMP-activated protein kinase complex,
and its yeast homologues Sip1, Sip2 and Gal83, which are
found in the SNF1 kinase complex. This region is
sufficient for interaction of this subunit with the
kinase complex, but is not solely responsible for the
interaction, and the interaction partner is not known.
The isoamylase N-terminal domain (pfam02922) is
sometimes found in proteins belonging to this family.
Length = 94
Score = 130 bits (328), Expect = 4e-40
Identities = 49/92 (53%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Query: 74 DDEYSQVIP-----PSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNH 128
YS IP E PP LPPHLL+ ILNK T + +P+LLP PNHV+LNH
Sbjct: 3 PSSYSNEIPANFQDLDFEEEFAKEPPSLPPHLLKTILNKPTASTDDPSLLPIPNHVVLNH 62
Query: 129 LYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
LY SIK+GV+ L T RY+ KYVTT+LYKP+
Sbjct: 63 LYTSSIKNGVLALGATTRYKSKYVTTVLYKPL 94
>gnl|CDD|214973 smart01010, AMPKBI, 5'-AMP-activated protein kinase beta subunit,
interation domain. This region is found in the beta
subunit of the 5'-AMP-activated protein kinase complex,
and its yeast homologues Sip1, Sip2 and Gal83, which are
found in the SNF1 kinase complex. This region is
sufficient for interaction of this subunit with the
kinase complex, but is not solely responsible for the
interaction, and the interaction partner is not known.
The isoamylase N-terminal domain is sometimes found in
proteins belonging to this family.
Length = 100
Score = 126 bits (319), Expect = 1e-38
Identities = 49/100 (49%), Positives = 60/100 (60%), Gaps = 10/100 (10%)
Query: 71 PKKDDEYSQVIPP---------SKPWEKQPGPPILPPHLLQVILNK-DTPLSCEPTLLPQ 120
+ Y+ IP P EK PP LPPHL +VILN T +P+LLP
Sbjct: 1 QSPPESYTNEIPACFTDDDFIEESPEEKWKEPPALPPHLEKVILNTSSTATREDPSLLPI 60
Query: 121 PNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
PNHV+LNHLY SIKDGV+ ++ T RYR KYVT +LYKP+
Sbjct: 61 PNHVVLNHLYTSSIKDGVLAVAATTRYRGKYVTQVLYKPL 100
>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a
glycogen binding domain, associated with the catalytic
domain of AMP-activated protein kinase beta subunit. E
or "early" set domains are associated with the
catalytic domain of AMP-activated protein kinase beta
subunit glycogen binding domain at the N-terminal end.
AMPK is a metabolic stress sensing protein that senses
AMP/ATP and has recently been found to act as a
glycogen sensor as well. The protein functions as an
alpha-beta-gamma heterotrimer. This N-terminal domain
is the glycogen binding domain of the beta subunit.
This domain is also a member of the CBM48 (Carbohydrate
Binding Module 48) family whose members include
pullulanase, maltooligosyl trehalose synthase, starch
branching enzyme, glycogen branching enzyme, glycogen
debranching enzyme, and isoamylase.
Length = 80
Score = 53.8 bits (130), Expect = 2e-10
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNN 47
++LP G +EYKF+VDGEW +P P ++ G+ NN
Sbjct: 40 TVELPPGRYEYKFIVDGEWVHDPDL---------PTVTDEFGNLNN 76
>gnl|CDD|240568 cd12962, X25_BaPul_like, X25 domain of Bacillus acidopullulyticus
pullulanase and similar proteins. Pullulanase (EC
3.2.1.41) cleaves 1,6-alpha-glucosidic linkages in
pullulan, amylopectin, and glycogen, and in alpha-and
beta-amylase limit-dextrins of amylopectin and
glycogen. BaPul is used industrially in the production
of high fructose corn syrup, high maltose content
syrups and low calorie and ''light'' beers.
Pullulanases, in addition to the catalytic domain,
include several carbohydrate-binding domains (CBMs) as
well as domains of unknown function (termed ''X''
modules). X25 was identified in Bacillus
acidopullulyticus pullulanase, and splits another
domain of unknown function (X45). X25 is present in
multiple copy in some pullulanases. It has been
suggested that X25 and X45 are CBMs which target mixed
alpha-1,6/alpha-1,4 linked D-glucan polysaccharides.
Length = 95
Score = 29.9 bits (68), Expect = 0.18
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 3 IDLPEGEHEYKFLVDGEWKVN 23
LP G++EYK ++G W N
Sbjct: 40 TTLPAGDYEYKVALNGSWDEN 60
>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain
associated with the catalytic domain of isoamylase-like
(also called glycogen 6-glucanohydrolase) proteins. E
or "early" set domains are associated with the
catalytic domain of isoamylase-like proteins at the
N-terminal end. Isoamylase is one of the
starch-debranching enzymes that catalyze the hydrolysis
of alpha-1,6-glucosidic linkages specific in
alpha-glucans such as amylopectin or glycogen.
Isoamylase contains a bound calcium ion, but this is
not in the same position as the conserved calcium ion
that has been reported in other alpha-amylase family
enzymes. The N-terminal domain of isoamylase may be
related to the immunoglobulin and/or fibronectin type
III superfamilies. These domains are associated with
different types of catalytic domains at either the
N-terminal or C-terminal end and may be involved in
homodimeric/tetrameric/dodecameric interactions.
Members of this family include members of the alpha
amylase family, sialidase, galactose oxidase,
cellulase, cellulose, hyaluronate lyase, chitobiase,
and chitinase. This domain is also a member of the
CBM48 (Carbohydrate Binding Module 48) family whose
members include pullulanase, maltooligosyl trehalose
synthase, starch branching enzyme, glycogen branching
enzyme, glycogen debranching enzyme, and the beta
subunit of AMP-activated protein kinase.
Length = 86
Score = 29.9 bits (68), Expect = 0.19
Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Query: 3 IDLPEG-EHEYKFLVDGE-WKVNPQ 25
+DLP G E+++++L+DGE W +P+
Sbjct: 44 LDLPAGREYQFRYLIDGERWVNDPE 68
>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic
domain of sugar utilizing enzymes at either the N or C
terminus. The E or "early" set domains of sugar
utilizing enzymes are associated with different types
of catalytic domains at either the N-terminal or
C-terminal end. These domains may be related to the
immunoglobulin and/or fibronectin type III
superfamilies. Members of this family include alpha
amylase, sialidase, galactose oxidase, cellulase,
cellulose, hyaluronate lyase, chitobiase, and
chitinase. A subset of these members were recently
identified as members of the CBM48 (Carbohydrate
Binding Module 48) family. Members of the CBM48 family
include pullulanase, maltooligosyl trehalose synthase,
starch branching enzyme, glycogen branching enzyme,
glycogen debranching enzyme, isoamylase, and the beta
subunit of AMP-activated protein kinase.
Length = 82
Score = 28.3 bits (63), Expect = 0.70
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 1 MIIDLPEGEHEYKFLVDGEWKVNP 24
I LP G +EYK+++DG V P
Sbjct: 41 ATIPLPLGTYEYKYVIDGGKNVLP 64
>gnl|CDD|221100 pfam11380, DUF3184, Protein of unknown function (DUF3184). This
eukaryotic family of proteins has no known function.
Length = 629
Score = 29.5 bits (66), Expect = 0.80
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 84 SKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNH 128
++PW+ P P+LL++ L++ S PT P P H++L++
Sbjct: 281 ARPWQASPK---FLPYLLELHLSRKEKDSAAPTPPPPPLHIVLDN 322
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 27.3 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 114 EPT--LLPQPNHVMLNHLYALSIKDGVMVLSTTH 145
EPT L P + H+ AL+ G+ VL TH
Sbjct: 158 EPTVGLDPASRAAITAHVRALARDQGLSVLWATH 191
>gnl|CDD|188875 cd09769, Luminal_IRE1, The Luminal domain, a dimerization domain,
of the Serine/Threonine protein kinase,
Inositol-requiring protein 1. The Luminal domain is a
dimerization domain present in Inositol-requiring
protein 1 (IRE1), a serine/threonine protein kinase
(STK) and a type I transmembrane protein that is
localized in the endoplasmic reticulum (ER). IRE1, also
called Endoplasmic reticulum (ER)-to-nucleus signaling
protein (or ERN), is a kinase receptor that also
contains an endoribonuclease domain in the cytoplasmic
side. It plays roles in the signaling of the unfolded
protein response (UPR), which is activated when protein
misfolding is detected in the ER in order to decrease
the synthesis of new proteins and increase the capacity
of the ER to cope with the stress. IRE1 acts as an ER
stress sensor and is the oldest and most conserved
component of the UPR in eukaryotes. During ER stress,
IRE1 dimerizes through its luminal domain and forms
oligomers, allowing the kinase domain to undergo
trans-autophosphorylation. This leads to a
conformational change that stimulates its
endoribonuclease activity and results in the cleavage of
its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans,
promoting a splicing event that enables translation into
a transcription factor which activates the UPR. Mammals
contain two IRE1 proteins, IRE1alpha (or ERN1) and
IRE1beta (or ERN2). IRE1alpha is expressed in all cells
and tissues while IRE1beta is found only in intestinal
epithelial cells.
Length = 295
Score = 27.3 bits (61), Expect = 4.3
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 80 VIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQ--PNHVMLNHLYALSIKDG 137
V+ P K P PP+ L + S E L P LYALS
Sbjct: 228 VLRPEPGLVKLPFPPVALETLQYLEDESPDFSSSEDKLRPTVYIGQTENGGLYALS---S 284
Query: 138 VMVLSTTHR 146
+L H
Sbjct: 285 KELLIGVHE 293
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 26.6 bits (58), Expect = 7.8
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 71 PKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNK 107
P P S +P P+ P + VIL++
Sbjct: 457 PPTQPLEGPTGPLSVQAPLEPWQPLPHPQVTPVILHQ 493
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 26.3 bits (58), Expect = 8.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 12 YKFLVDGEWKV 22
YK+ DGEW+
Sbjct: 16 YKYYADGEWRT 26
>gnl|CDD|237571 PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 296
Score = 25.9 bits (58), Expect = 9.0
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 84 SKPWEKQPGPPILPPHLLQ 102
+ W+K P LP +++
Sbjct: 259 TSGWDKTAPAPPLPADVIE 277
>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase.
Length = 322
Score = 26.2 bits (57), Expect = 9.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 129 LYALSIKDGVMVLSTTHRYRKKYVTTLL 156
L AL+I +G VLST +R + Y +T++
Sbjct: 221 LSALTIPNGATVLSTINRTMRAYASTIV 248
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.136 0.411
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,156,065
Number of extensions: 714589
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 25
Length of query: 160
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 71
Effective length of database: 6,990,096
Effective search space: 496296816
Effective search space used: 496296816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.0 bits)