RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15184
(160 letters)
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens}
SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B*
2y94_B* 2ya3_B*
Length = 87
Score = 123 bits (311), Expect = 7e-38
Identities = 63/85 (74%), Positives = 70/85 (82%)
Query: 76 EYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIK 135
Y Q + + E+ PPILPPHLLQVILNKDT +SC+P LLP+PNHVMLNHLYALSIK
Sbjct: 3 PYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIK 62
Query: 136 DGVMVLSTTHRYRKKYVTTLLYKPI 160
D VMVLS THRY+KKYVTTLLYKPI
Sbjct: 63 DSVMVLSATHRYKKKYVTTLLYKPI 87
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B*
2qr1_B* 2qrc_B* 2oox_B* 2qre_B*
Length = 97
Score = 115 bits (288), Expect = 3e-34
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 72 KKDDEYSQVIP-----PSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVML 126
+ ++YS IP + K P PP LPPHL + ILN +T + ++LP PNHV+L
Sbjct: 2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLL 61
Query: 127 NHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
NHL A + + GV+ LS T RY +KYVTT ++K
Sbjct: 62 NHLAAANTQLGVLALSATTRYHRKYVTTAMFKNF 95
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate
metabolism, kinase, membrane, nucleotide-binding,
nucleus; 2.60A {Saccharomyces cerevisiae} SCOP:
b.1.18.21 d.353.1.1
Length = 252
Score = 116 bits (290), Expect = 6e-33
Identities = 54/217 (24%), Positives = 80/217 (36%), Gaps = 67/217 (30%)
Query: 2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
+ L G H ++F+VD E +V+ P +++G+ N + V++ +
Sbjct: 45 KLRLLPGTHRFRFIVDNELRVSDFL---------PTATDQMGNFVNYIEVRQPEKNPTNE 95
Query: 62 LDVDSQ----------------------------------DTTPKKDDEYSQVIP----- 82
+ D +P+ EY+ IP
Sbjct: 96 KIRSKEADSMRPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTD 155
Query: 83 --------------PSKPWEKQPGPPILPPHLLQVILNK-----DTPLSCEPTLLPQPNH 123
S PP LPP L VILNK D LP PNH
Sbjct: 156 PSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNH 215
Query: 124 VMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
V+LNHL SIK + +++ RY++KYVT +LY PI
Sbjct: 216 VVLNHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPI 252
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding,
cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_B* 3te5_B*
Length = 113
Score = 109 bits (274), Expect = 6e-32
Identities = 38/98 (38%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 68 DTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNK-----DTPLSCEPTLLPQPN 122
D + + Y+ S PP LPP L VILNK D LP PN
Sbjct: 13 DPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPN 72
Query: 123 HVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
HV+LNHL SIK + +++ RY++KYVT +LY PI
Sbjct: 73 HVVLNHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPI 110
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 59.4 bits (143), Expect = 2e-11
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
+LPEG+ EYK+++DGEW N E NK G NN V V
Sbjct: 211 KRELPEGQFEYKYIIDGEWTHNEAEPFI--------GPNKDGHTNNYAKVVDDPTSVDGT 262
Query: 62 LDVDSQDTTPKKDDE 76
P+ +E
Sbjct: 263 TRERLSSEDPELLEE 277
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich,
sugar binding protein; HET: BCD; 1.49A {Rattus
norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Length = 96
Score = 53.7 bits (129), Expect = 2e-10
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 9/57 (15%)
Query: 3 IDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF 59
+DLPEGEH+YKF VDG+W +P E P+ ++LG+ NN + VKKTDFEVF
Sbjct: 49 LDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVF 96
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 34.4 bits (79), Expect = 0.012
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 3 IDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEAL 62
+ L GE+ Y F +D +++ V + +KL +K+ D + +
Sbjct: 60 LKLWPGEYGYGFQIDNDFENVLDPDNEEKKCVHTSFFPEYKKCLSKLVIKEPDN-PLDKI 118
Query: 63 --DVDSQDTTPKKD 74
+S
Sbjct: 119 IHIEESGFIHKFNG 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.63
Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 30 IAFLVSPVQENKLGSKNNKLAVKKTDFE-----------VFEALDVDSQDTTPKKDDE-- 76
+ ++ S V+ +K+G + L + T+FE + L ++ T K +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 77 --YSQVIPPSKPWEKQPGPPIL 96
+ I +P++K+ +
Sbjct: 125 NYITARIMAKRPFDKKSNSALF 146
Score = 26.6 bits (58), Expect = 5.4
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 24/133 (18%)
Query: 43 GSKNNKLAVKKTDFEVFEALDVDSQDTTPKKDDEYSQVIPPSKPWE------------KQ 90
GS + L V F + L P+ + ++ P+ P E +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 91 PGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSI-KDGVMVLSTTHRYRK 149
P +L + L + E L + N + H A + ++ L T K
Sbjct: 74 PSKVGQFDQVLNLCLTEF-----ENCYL-EGNDI---HALAAKLLQENDTTLVKTKELIK 124
Query: 150 KYVT--TLLYKPI 160
Y+T + +P
Sbjct: 125 NYITARIMAKRPF 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.6
Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 31/159 (19%)
Query: 3 IDLPEGEHEYK-----------FLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAV 51
+D GEH+Y+ F+ + + K K I L ++ + SK+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGT 64
Query: 52 KKTDFEVFEALDVDSQDTTPKK------DDEYSQVIPPSKPWEKQPGPPILPPHL----L 101
+ F Q+ +K Y ++ P + + P + +
Sbjct: 65 LRL-FWTLL----SKQEEMVQKFVEEVLRINYKFLM---SPIKTEQRQPSMMTRMYIEQR 116
Query: 102 QVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMV 140
+ N + + QP + L L V++
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 27.1 bits (60), Expect = 2.8
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 93 PPILPPHLLQVILNKDTPLSCEPTLLPQPN 122
P I+ N L C+ P P
Sbjct: 2 PHIIQLKNETTYENGQVTLVCDAEGEPIPE 31
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 26.7 bits (58), Expect = 4.0
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 90 QPGPPILPPHLLQVILNKDTP 110
++PP++L+ I+ +
Sbjct: 4 LTARSVIPPYMLRRIIEHGSL 24
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 25.7 bits (56), Expect = 6.9
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 85 KPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTT 144
+ W ++ GP + +V + L C+ + + H++ KD +
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVW-------YKDEREISVDE 162
Query: 145 HRYRKKYVTTL 155
K + TL
Sbjct: 163 KHDFKDGICTL 173
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 25.8 bits (56), Expect = 8.6
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 20 WKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEAL--DVDSQDTTPKKDDEY 77
W + Q + S QE +L S ++L + + + V Q T +
Sbjct: 45 WLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDS--- 101
Query: 78 SQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSC 113
+ + + P + + K ++C
Sbjct: 102 --TKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITC 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.411
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,402,003
Number of extensions: 126710
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 21
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.4 bits)