RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15184
(160 letters)
>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase
subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 123 bits (311), Expect = 2e-38
Identities = 62/82 (75%), Positives = 69/82 (84%)
Query: 79 QVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGV 138
Q + + E+ PPILPPHLLQVILNKDT +SC+P LLP+PNHVMLNHLYALSIKD V
Sbjct: 2 QEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSV 61
Query: 139 MVLSTTHRYRKKYVTTLLYKPI 160
MVLS THRY+KKYVTTLLYKPI
Sbjct: 62 MVLSATHRYKKKYVTTLLYKPI 83
>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta
subunit {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 93
Score = 122 bits (307), Expect = 1e-37
Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 76 EYSQVIP-----PSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLY 130
+YS IP + K P PP LPPHL + ILN +T + ++LP PNHV+LNHL
Sbjct: 3 QYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLA 62
Query: 131 ALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
A + + GV+ LS T RY +KYVTT ++K
Sbjct: 63 AANTQLGVLALSATTRYHRKYVTTAMFKNF 92
>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae
[TaxId: 4932]}
Length = 107
Score = 107 bits (268), Expect = 1e-31
Identities = 37/91 (40%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 75 DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNK-----DTPLSCEPTLLPQPNHVMLNHL 129
Q W PP LPP L VILNK D LP PNHV+LNHL
Sbjct: 20 TLDRQQSNTDTSW---LTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHL 76
Query: 130 YALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
SIK + +++ RY++KYVT +LY PI
Sbjct: 77 VTSSIKHNTLCVASIVRYKQKYVTQILYTPI 107
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase
subunit beta-1 {Rattus norvegicus [TaxId: 10116]}
Length = 87
Score = 60.7 bits (147), Expect = 1e-13
Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 9/58 (15%)
Query: 2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF 59
I+DLPEGEH+YKF VDG+W +P E P+ ++LG+ NN + VKKTDFEVF
Sbjct: 39 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVF 87
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae
[TaxId: 4932]}
Length = 87
Score = 38.9 bits (90), Expect = 2e-05
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 1 MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKK 53
+ + L G H ++F+VD E +V+ P +++G+ N + V++
Sbjct: 44 VKLRLLPGTHRFRFIVDNELRVSDFL---------PTATDQMGNFVNYIEVRQ 87
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium
[TaxId: 1510]}
Length = 132
Score = 27.4 bits (60), Expect = 0.52
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 3 IDLPEGEHEYKFLVDGEWKVN 23
I G + + G V+
Sbjct: 104 ISNTAGVKDIVLVFSGPVNVD 124
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium
[TaxId: 1510]}
Length = 132
Score = 26.2 bits (57), Expect = 1.3
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 3 IDLPEGEHEYKFLVDGEWKVN 23
I G H+ + G V+
Sbjct: 104 ISKITGVHDIVLVFSGPVNVD 124
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U
{Clostridium thermocellum [TaxId: 1515]}
Length = 125
Score = 26.2 bits (57), Expect = 1.4
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 3 IDLPEGEHEYKFLVDGEWKVN 23
I G+H+ + G ++
Sbjct: 97 ITNTTGQHDLYLVFSGPVNID 117
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 26.4 bits (57), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 11 EYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGS 44
+YK V+GEWK++ E+K P +LGS
Sbjct: 3 QYKNYVNGEWKLSENEIKIY----EPASGAELGS 32
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 25.4 bits (55), Expect = 3.3
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 78 SQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLP 119
S VIP SKP PP + D +C T P
Sbjct: 286 SDVIPLSKPIPGNGPFSFFPPGK----SHSDIEQACAETPFP 323
>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase,
N-terminal domain N {Deinococcus radiodurans [TaxId:
1299]}
Length = 97
Score = 24.5 bits (53), Expect = 3.9
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 2 IIDLPEGEHEYKFLVDGEWKVNP 24
+ + G Y F++DG +P
Sbjct: 57 ELPVGPGAR-YLFVLDGVPTPDP 78
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
{Escherichia coli [TaxId: 562]}
Length = 347
Score = 25.2 bits (55), Expect = 3.9
Identities = 9/74 (12%), Positives = 26/74 (35%)
Query: 4 DLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEALD 63
L + E E+ + GE ++ + + V + + L + + ++ D++ +
Sbjct: 196 TLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGSYHRTLRFWDYQQGSWQE 255
Query: 64 VDSQDTTPKKDDEY 77
+ D
Sbjct: 256 EQQTKQPLQSGDRV 269
>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha
constant domain 2, CH2-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 23.5 bits (50), Expect = 8.4
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 90 QPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVML 126
P + P L ++L + L+C T L + V
Sbjct: 2 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTF 38
>d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma
virus, m156r [TaxId: 10273]}
Length = 102
Score = 23.3 bits (50), Expect = 9.4
Identities = 11/59 (18%), Positives = 20/59 (33%)
Query: 21 KVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEALDVDSQDTTPKKDDEYSQ 79
KVN + V E + K+ V+ +E E + +D + D +
Sbjct: 19 KVNTYRTSAMDLSPGSVHEGIVYFKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKE 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.136 0.411
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 599,826
Number of extensions: 26386
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 14
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (22.8 bits)