Query psy15185
Match_columns 611
No_of_seqs 404 out of 1960
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:45:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 100.0 5.2E-61 1.1E-65 497.1 31.9 365 114-479 30-449 (449)
2 PTZ00206 amino acid transporte 100.0 7.6E-48 1.6E-52 418.1 24.0 333 129-480 58-465 (467)
3 KOG1303|consensus 100.0 6.3E-44 1.4E-48 376.8 26.6 338 128-481 35-436 (437)
4 PLN03074 auxin influx permease 100.0 4.8E-43 1.1E-47 378.8 27.2 349 126-485 41-457 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.8E-44 3.8E-49 388.7 -0.8 336 129-476 1-408 (409)
6 KOG1305|consensus 100.0 4.5E-37 9.8E-42 323.3 15.7 330 128-482 3-408 (411)
7 KOG4303|consensus 100.0 1.4E-37 3.1E-42 303.1 2.3 340 129-486 115-521 (524)
8 COG0814 SdaC Amino acid permea 100.0 9.5E-29 2.1E-33 263.8 25.9 330 127-476 5-412 (415)
9 KOG1304|consensus 99.9 3E-27 6.5E-32 245.8 8.1 103 1-103 68-170 (449)
10 PF03222 Trp_Tyr_perm: Tryptop 99.8 1.5E-18 3.3E-23 184.3 24.6 318 130-467 2-390 (394)
11 PRK10483 tryptophan permease; 99.8 1.6E-17 3.5E-22 174.9 26.1 296 128-444 8-373 (414)
12 PRK15132 tyrosine transporter 99.8 3.2E-17 7E-22 173.4 25.3 317 131-470 3-390 (403)
13 TIGR00837 araaP aromatic amino 99.8 6.8E-18 1.5E-22 180.2 19.5 288 137-445 3-360 (381)
14 PRK09664 tryptophan permease T 99.8 5.5E-17 1.2E-21 170.7 24.5 295 129-444 7-374 (415)
15 PRK13629 threonine/serine tran 99.6 2.1E-13 4.6E-18 143.7 24.2 316 138-473 26-440 (443)
16 TIGR00814 stp serine transport 99.4 3E-12 6.5E-17 136.0 18.5 292 136-441 8-376 (397)
17 KOG4303|consensus 99.4 1.2E-13 2.6E-18 136.2 3.2 114 493-610 322-441 (524)
18 KOG1303|consensus 99.3 6.4E-12 1.4E-16 133.8 10.8 129 473-609 231-359 (437)
19 PLN03074 auxin influx permease 99.3 1.7E-12 3.6E-17 141.2 5.4 118 479-609 242-361 (473)
20 PTZ00206 amino acid transporte 99.3 3E-12 6.5E-17 139.7 5.2 89 491-582 274-365 (467)
21 PF01490 Aa_trans: Transmembra 99.2 1.6E-12 3.4E-17 140.2 1.3 119 491-609 210-332 (409)
22 PRK10655 potE putrescine trans 99.1 5.6E-08 1.2E-12 105.9 26.8 237 128-384 5-247 (438)
23 TIGR00930 2a30 K-Cl cotranspor 99.0 5.3E-08 1.2E-12 114.0 26.1 237 127-382 74-336 (953)
24 TIGR00909 2A0306 amino acid tr 99.0 1.7E-07 3.6E-12 101.9 26.6 237 128-384 2-253 (429)
25 TIGR00906 2A0303 cationic amin 99.0 1.6E-06 3.5E-11 97.0 34.8 239 127-384 26-289 (557)
26 KOG3832|consensus 99.0 9E-09 1.9E-13 95.1 13.0 220 132-353 13-302 (319)
27 TIGR00912 2A0309 spore germina 99.0 5.8E-08 1.3E-12 102.9 21.3 236 130-389 2-241 (359)
28 PRK10644 arginine:agmatin anti 99.0 3.6E-07 7.7E-12 99.8 27.5 241 125-385 4-250 (445)
29 TIGR00905 2A0302 transporter, 98.9 9.7E-07 2.1E-11 97.1 28.4 242 128-386 6-258 (473)
30 PRK10435 cadB lysine/cadaverin 98.9 1.3E-06 2.8E-11 95.0 27.7 238 127-386 3-247 (435)
31 TIGR00908 2A0305 ethanolamine 98.8 1.3E-06 2.8E-11 95.3 26.7 231 127-380 5-245 (442)
32 TIGR03810 arg_ornith_anti argi 98.8 1.1E-06 2.4E-11 96.5 25.5 241 129-386 1-254 (468)
33 PRK10249 phenylalanine transpo 98.8 1.1E-06 2.4E-11 96.1 25.1 232 127-382 19-265 (458)
34 KOG1287|consensus 98.8 2.7E-07 5.9E-12 98.0 19.4 301 126-445 9-387 (479)
35 TIGR00911 2A0308 L-type amino 98.8 2E-06 4.3E-11 95.4 26.2 246 121-385 34-294 (501)
36 PRK15049 L-asparagine permease 98.8 7.3E-06 1.6E-10 90.6 30.2 238 127-386 26-280 (499)
37 PRK11021 putative transporter; 98.8 6.2E-06 1.4E-10 89.0 29.0 227 132-380 2-231 (410)
38 TIGR01773 GABAperm gamma-amino 98.8 2.1E-06 4.6E-11 93.9 25.2 235 126-384 9-259 (452)
39 PRK11049 D-alanine/D-serine/gl 98.7 3E-06 6.5E-11 93.1 24.4 232 127-382 18-267 (469)
40 PRK11387 S-methylmethionine tr 98.7 5.1E-06 1.1E-10 91.3 25.8 237 127-386 12-266 (471)
41 PRK10746 putative transport pr 98.7 6.9E-06 1.5E-10 90.0 26.3 234 128-385 9-259 (461)
42 PRK10836 lysine transporter; P 98.6 1.2E-05 2.7E-10 88.7 26.7 236 127-385 13-264 (489)
43 KOG1305|consensus 98.6 1.8E-07 3.9E-12 99.4 11.1 88 492-582 213-308 (411)
44 TIGR00913 2A0310 amino acid pe 98.6 1.6E-05 3.4E-10 87.7 26.9 230 129-380 2-251 (478)
45 PRK10238 aromatic amino acid t 98.6 2E-05 4.3E-10 86.3 25.7 227 127-377 10-251 (456)
46 PRK10580 proY putative proline 98.6 2.6E-05 5.7E-10 85.4 26.2 231 127-381 7-254 (457)
47 PF13520 AA_permease_2: Amino 98.5 1E-05 2.2E-10 87.8 22.4 236 132-388 2-248 (426)
48 PRK11357 frlA putative fructos 98.5 3.2E-05 7E-10 84.4 25.3 232 127-382 6-251 (445)
49 PF03845 Spore_permease: Spore 98.5 5.5E-06 1.2E-10 86.3 17.8 235 130-389 1-237 (320)
50 COG0531 PotE Amino acid transp 98.4 7.4E-05 1.6E-09 81.9 25.5 241 128-387 11-262 (466)
51 COG1113 AnsP Gamma-aminobutyra 98.3 0.00063 1.4E-08 71.8 28.4 238 128-388 12-270 (462)
52 PRK10197 gamma-aminobutyrate t 98.3 8.4E-05 1.8E-09 81.1 23.2 217 141-381 4-236 (446)
53 TIGR00907 2A0304 amino acid pe 98.1 0.0024 5.2E-08 70.5 28.8 237 128-379 11-270 (482)
54 TIGR03428 ureacarb_perm permea 97.9 0.0057 1.2E-07 67.4 27.5 241 128-386 12-273 (475)
55 COG0814 SdaC Amino acid permea 97.9 2.2E-05 4.7E-10 84.5 7.6 93 1-107 30-122 (415)
56 KOG1286|consensus 97.8 0.00018 3.9E-09 79.5 13.5 240 126-381 27-287 (554)
57 TIGR00800 ncs1 NCS1 nucleoside 97.7 0.016 3.4E-07 63.3 26.5 178 198-388 76-273 (442)
58 COG0833 LysP Amino acid transp 97.7 0.0019 4.2E-08 69.6 17.8 232 127-379 42-287 (541)
59 KOG1289|consensus 97.7 0.0044 9.4E-08 66.9 20.4 173 217-391 127-317 (550)
60 PF00324 AA_permease: Amino ac 97.6 0.0021 4.6E-08 70.9 17.0 229 141-388 7-262 (478)
61 PRK15238 inner membrane transp 97.5 0.0069 1.5E-07 67.1 20.0 54 325-381 212-266 (496)
62 TIGR03813 put_Glu_GABA_T putat 97.3 0.1 2.3E-06 57.4 25.9 52 332-386 202-254 (474)
63 TIGR00910 2A0307_GadC glutamat 97.1 0.1 2.3E-06 57.9 23.6 49 328-379 198-247 (507)
64 PRK12488 acetate permease; Pro 97.1 0.78 1.7E-05 51.5 30.1 188 74-303 32-221 (549)
65 PRK11375 allantoin permease; P 97.0 0.18 3.8E-06 55.7 23.8 49 198-256 89-138 (484)
66 COG3949 Uncharacterized membra 97.0 0.32 6.9E-06 49.6 23.2 101 137-254 9-112 (349)
67 PF02554 CstA: Carbon starvati 97.0 0.046 9.9E-07 56.7 17.4 219 89-351 20-238 (376)
68 TIGR02358 thia_cytX probable h 96.9 0.48 1E-05 50.7 25.1 176 198-388 58-234 (386)
69 PF00474 SSF: Sodium:solute sy 96.9 0.073 1.6E-06 57.3 19.0 155 129-305 6-163 (406)
70 PRK09442 panF sodium/panthothe 96.7 1.4 3.1E-05 48.6 33.4 157 129-303 41-199 (483)
71 PRK15419 proline:sodium sympor 96.7 1.5 3.3E-05 48.6 32.1 187 76-300 7-198 (502)
72 COG1457 CodB Purine-cytosine p 96.6 0.38 8.1E-06 51.7 21.7 165 218-389 91-258 (442)
73 TIGR02711 symport_actP cation/ 96.4 2.3 4.9E-05 47.8 31.1 149 129-299 67-217 (549)
74 TIGR02119 panF sodium/pantothe 96.4 2.1 4.5E-05 47.2 33.0 157 129-304 40-199 (471)
75 TIGR00835 agcS amino acid carr 96.3 0.15 3.3E-06 54.7 16.7 88 129-229 45-138 (425)
76 PRK09395 actP acetate permease 96.1 3.2 7E-05 46.6 30.5 185 75-301 35-221 (551)
77 COG1966 CstA Carbon starvation 96.1 0.11 2.3E-06 56.3 13.9 139 88-251 19-157 (575)
78 TIGR00837 araaP aromatic amino 96.0 0.55 1.2E-05 50.0 19.4 88 1-104 18-106 (381)
79 COG0591 PutP Na+/proline sympo 96.0 3.3 7.1E-05 45.9 31.2 152 130-299 39-192 (493)
80 TIGR00813 sss transporter, SSS 95.9 3.1 6.8E-05 44.7 27.7 151 129-301 3-155 (407)
81 PRK15015 carbon starvation pro 95.5 0.58 1.2E-05 52.1 16.7 151 74-250 37-187 (701)
82 PF03222 Trp_Tyr_perm: Tryptop 95.3 1.7 3.8E-05 46.5 19.7 91 1-106 24-114 (394)
83 TIGR02121 Na_Pro_sym sodium/pr 95.0 7.2 0.00015 43.1 31.4 155 129-300 36-194 (487)
84 PRK11017 codB cytosine permeas 94.5 4.9 0.00011 43.3 20.7 169 198-387 71-244 (404)
85 PF02133 Transp_cyt_pur: Perme 92.1 0.73 1.6E-05 50.2 9.7 111 130-257 8-120 (440)
86 PRK15132 tyrosine transporter 91.1 0.58 1.3E-05 50.2 7.3 89 1-104 24-112 (403)
87 TIGR00796 livcs branched-chain 87.9 22 0.00047 37.9 16.0 72 139-231 3-77 (378)
88 TIGR03648 Na_symport_lg probab 87.0 58 0.0013 36.6 26.8 149 129-299 32-182 (552)
89 PRK13629 threonine/serine tran 86.4 6.7 0.00014 42.4 11.2 88 1-105 40-130 (443)
90 COG1914 MntH Mn2+ and Fe2+ tra 85.4 58 0.0013 35.1 27.4 36 218-253 87-122 (416)
91 PRK00701 manganese transport p 83.5 73 0.0016 34.7 27.4 44 199-252 95-138 (439)
92 PF01235 Na_Ala_symp: Sodium:a 83.4 70 0.0015 34.5 17.3 51 129-180 17-68 (416)
93 TIGR00814 stp serine transport 79.8 6.5 0.00014 42.2 8.0 91 1-105 24-114 (397)
94 KOG2083|consensus 79.5 13 0.00029 41.1 10.1 218 136-379 40-276 (643)
95 PRK10484 putative transporter; 78.2 1.2E+02 0.0026 33.8 31.5 153 129-300 38-199 (523)
96 TIGR00796 livcs branched-chain 71.5 33 0.00071 36.5 10.6 64 217-285 264-327 (378)
97 PRK09664 tryptophan permease T 69.2 11 0.00024 40.5 6.5 88 1-103 30-117 (415)
98 KOG1288|consensus 66.8 2E+02 0.0044 32.9 15.2 55 325-382 295-350 (945)
99 PRK10483 tryptophan permease; 65.7 15 0.00032 39.5 6.6 88 1-103 32-119 (414)
100 COG4147 DhlC Predicted symport 64.0 2.3E+02 0.0049 31.1 17.1 170 198-384 104-294 (529)
101 PF05525 Branch_AA_trans: Bran 59.5 30 0.00065 37.4 7.5 59 216-278 269-327 (427)
102 PF11057 Cortexin: Cortexin of 59.2 16 0.00034 28.6 3.8 37 17-53 31-68 (81)
103 KOG3832|consensus 58.7 55 0.0012 31.3 8.0 105 1-105 33-178 (319)
104 COG1114 BrnQ Branched-chain am 57.3 64 0.0014 34.5 9.2 59 216-278 271-329 (431)
105 PLN02680 carbon-monoxide oxyge 49.1 2.4E+02 0.0053 27.7 11.2 38 347-387 69-106 (232)
106 PF01566 Nramp: Natural resist 48.0 3.5E+02 0.0076 28.3 16.9 79 218-301 52-132 (358)
107 COG1115 AlsT Na+/alanine sympo 47.6 4E+02 0.0087 28.9 16.2 49 129-178 61-110 (452)
108 COG5102 SFT2 Membrane protein 32.7 2.1E+02 0.0045 26.4 7.2 45 492-542 144-188 (201)
109 PF13520 AA_permease_2: Amino 31.9 1.6E+02 0.0036 31.4 8.0 84 492-580 207-300 (426)
110 COG1953 FUI1 Cytosine/uracil/t 31.9 7.4E+02 0.016 27.4 24.7 194 197-401 102-321 (497)
111 TIGR00842 bcct choline/carniti 29.2 7.9E+02 0.017 26.9 14.7 121 132-258 38-174 (453)
112 PF05805 L6_membrane: L6 membr 27.0 1.4E+02 0.003 28.5 5.4 69 413-481 42-117 (195)
113 PRK15433 branched-chain amino 26.4 2.6E+02 0.0056 30.4 8.1 59 216-279 273-331 (439)
114 PHA02680 ORF090 IMV phosphoryl 25.3 3.5E+02 0.0076 22.1 6.5 62 461-542 15-76 (91)
115 PF15069 FAM163: FAM163 family 24.8 1E+02 0.0022 27.6 3.9 31 7-43 9-39 (143)
116 PF03169 OPT: OPT oligopeptide 23.2 6.1E+02 0.013 29.0 10.9 42 144-185 366-409 (624)
117 PRK11021 putative transporter; 22.9 2E+02 0.0043 30.8 6.6 33 494-529 198-231 (410)
118 KOG1289|consensus 22.7 1.1E+03 0.024 26.4 13.6 36 219-254 336-371 (550)
119 PF11085 YqhR: Conserved membr 22.0 4E+02 0.0088 24.8 7.2 87 219-308 66-152 (173)
120 TIGR02736 cbb3_Q_epsi cytochro 20.4 2.2E+02 0.0047 21.2 4.1 26 35-60 19-44 (56)
121 PHA02680 ORF090 IMV phosphoryl 20.1 2.1E+02 0.0046 23.3 4.4 62 330-394 17-78 (91)
No 1
>KOG1304|consensus
Probab=100.00 E-value=5.2e-61 Score=497.11 Aligned_cols=365 Identities=46% Similarity=0.872 Sum_probs=346.2
Q ss_pred CCCCCCCCCCccccCCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15185 114 DDSTPYDPHKHRVLEHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKK 193 (611)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~ 193 (611)
.++++.+|..+++.++..|..++..|+.|.++|+|+|++|+||+++||+.|.+..++++.++.||++.+++|.++.++|.
T Consensus 30 ~~d~~~~~~~~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~ 109 (449)
T KOG1304|consen 30 PNDGDYSPLQLRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRF 109 (449)
T ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44556677777777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-cchHHHHHHHHHHH
Q psy15185 194 RVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-VMDVRIVMVLLLLP 272 (611)
Q Consensus 194 ~~~~~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~ 272 (611)
+++..+|++.++.+++.||.|.+.+|+++|.++++++.++|+|.|++|+++++++++++.+.... .++.+.++++.++|
T Consensus 110 ~~~~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~ 189 (449)
T KOG1304|consen 110 RGPSLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPP 189 (449)
T ss_pred CCccccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999995443 88999999999999
Q ss_pred HHHhhcccccchhhhHHHHHHHHHHHHHHhhhheecccCCCCCCCCCcCCcchhhHHHHHHHHhcccccchhcchhhccC
Q psy15185 273 LIGINSIRNLKLLAPFSQLANVITFIGLGITMYYICQALPPVSSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKT 352 (611)
Q Consensus 273 ~~~l~~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~ 352 (611)
+.+++++||+|+++++|++|+++++.+++++.+|...+.++.++.+...++.+++.++|+.+|||++++++.|++++||+
T Consensus 190 ~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~ 269 (449)
T KOG1304|consen 190 LLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKK 269 (449)
T ss_pred HHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccC
Confidence 99999999999999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred CcccCccchhhhhHHHHHHHHHHHHHhHhhhhcCcccccccccccCCcCHHHH---------------------------
Q psy15185 353 PASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIIGI--------------------------- 405 (611)
Q Consensus 353 p~~~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~--------------------------- 405 (611)
|++|..+++++..+|.+++++|..+|++||++||+++++.|++|+|+ +++.|
T Consensus 270 P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 270 PQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred hhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 99999777799999999999999999999999999999999999999 66543
Q ss_pred ---------------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHH
Q psy15185 406 ---------------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLWPDQFGPFKFILIRDI 458 (611)
Q Consensus 406 ---------------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~ 458 (611)
.+|.++||++.+++++||++++.+.+++|+++|++.+|.+.++..+|+.+.|+
T Consensus 349 ~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni 428 (449)
T KOG1304|consen 349 GIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNI 428 (449)
T ss_pred hHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHH
Confidence 68889999999999999999999999999999999999987778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15185 459 LLIIGGIFALILGTFISLQDI 479 (611)
Q Consensus 459 ~i~~~Gi~~~v~gt~~si~~i 479 (611)
+++++|++.++.|||.+++++
T Consensus 429 ~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 429 VLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999999874
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=7.6e-48 Score=418.12 Aligned_cols=333 Identities=19% Similarity=0.265 Sum_probs=274.1
Q ss_pred CCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVAL 208 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~ 208 (611)
++++..++.+|++|+++|+|+|++|+||+++||+.|++++++++.++.||.++|.+++++.+ ..+|+|++++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~------~~sY~~la~~~~ 131 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN------IRTYEGVARVLL 131 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCHHHHHHHHh
Confidence 46678999999999999999999999999999999999999999999999999999887522 349999999998
Q ss_pred hcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc------cchHH-HHHHHHHHHHHHhhcccc
Q psy15185 209 QQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA------VMDVR-IVMVLLLLPLIGINSIRN 281 (611)
Q Consensus 209 ~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~------~~~~~-~~~~i~~~~~~~l~~~~~ 281 (611)
||++++++++++.+.++|+|++|+++.+|+++.+++.... ..+.+ .+..+.++.++|++++|+
T Consensus 132 ----------G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~ 201 (467)
T PTZ00206 132 ----------GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRH 201 (467)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccc
Confidence 9999999999999999999999999999999988864311 11222 223345566789999999
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhheec-ccCCCC-CC----------CCCcCCcchhhHHHHHHHHhcccccchhcchhh
Q psy15185 282 LKLLAPFSQLANVITFIGLGITMYYIC-QALPPV-SS----------RPYFGDPRNWNLFIGTTLFALEAVGVVIALENN 349 (611)
Q Consensus 282 l~~l~~~s~~~~~~i~~~~~~v~~~~~-~~~~~~-~~----------~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~ 349 (611)
+++++++|.++++++++.++.++++.. .+.|+. ++ .+.+....+++.++|+++|||.||.+++|+++|
T Consensus 202 i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~ 281 (467)
T PTZ00206 202 IDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMD 281 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHh
Confidence 999999999999998877766665443 333321 11 111222346788999999999999999999999
Q ss_pred ccCC--cccCccchhhhhHHHHHHHHHHHHHhHhhhhcCccccccccccc-CCcCHHHH---------------------
Q psy15185 350 MKTP--ASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNL-PKEDIIGI--------------------- 405 (611)
Q Consensus 350 mk~p--~~~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~~~~il~n~-p~~~~~~~--------------------- 405 (611)
||+| +|+.+ ++..++.+++++|.++|++||++||++++++++.|+ |.+++...
T Consensus 282 M~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~ 358 (467)
T PTZ00206 282 MTNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMAC 358 (467)
T ss_pred hcccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhH
Confidence 9986 45555 889999999999999999999999999999999999 65553210
Q ss_pred --------------------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCCCchhHH
Q psy15185 406 --------------------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLWPDQFGPFKFI 453 (611)
Q Consensus 406 --------------------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~ 453 (611)
++|+++|+++.+++++||++++.++|++|+++|++....++.+..+++
T Consensus 359 r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~ 438 (467)
T PTZ00206 359 RNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFY 438 (467)
T ss_pred HHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHH
Confidence 678999999999999999999999999999999985211111123444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15185 454 LIRDILLIIGGIFALILGTFISLQDIV 480 (611)
Q Consensus 454 ~~~~~~i~~~Gi~~~v~gt~~si~~ii 480 (611)
.+.+++++++|++..+.|||.++++.+
T Consensus 439 ~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 439 YISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHhheEEecchhHhhHHh
Confidence 588999999999999999999999875
No 3
>KOG1303|consensus
Probab=100.00 E-value=6.3e-44 Score=376.83 Aligned_cols=338 Identities=19% Similarity=0.326 Sum_probs=285.9
Q ss_pred CCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
+++.||+++.+|.+|.++|.|+|+||||+++.||+.|+++++++++++.||..+|.+|.+..+.+..++..+|+|+++++
T Consensus 35 ~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~a 114 (437)
T KOG1303|consen 35 SRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAA 114 (437)
T ss_pred CCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999998877777778999999999
Q ss_pred HhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc---cchHHHHHHHHHHHHHHhhcccccch
Q psy15185 208 LQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA---VMDVRIVMVLLLLPLIGINSIRNLKL 284 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~---~~~~~~~~~i~~~~~~~l~~~~~l~~ 284 (611)
| |+++++++...+.+.++|.++.|++..+|++..+.+..+. ..+.+.|++++.+..+|+++++|++.
T Consensus 115 f----------G~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~ 184 (437)
T KOG1303|consen 115 F----------GPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHS 184 (437)
T ss_pred h----------CCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcch
Confidence 9 7777999999999999999999999999999999998765 23467889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhheecccCCCC-CCCCCcCCc--chh-hHHHHHHHHhcccccchhcchhhccCCcccCccc
Q psy15185 285 LAPFSQLANVITFIGLGITMYYICQALPPV-SSRPYFGDP--RNW-NLFIGTTLFALEAVGVVIALENNMKTPASFGGYY 360 (611)
Q Consensus 285 l~~~s~~~~~~i~~~~~~v~~~~~~~~~~~-~~~~~~~~~--~~~-~~~~g~~~faf~~~~~i~~i~~~mk~p~~~~~~~ 360 (611)
++++|..+.+..+....+..+....+..+. .+.....++ ... ++++|++.|+|.+|+++||||++||+|++|+|
T Consensus 185 l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~-- 262 (437)
T KOG1303|consen 185 LSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKK-- 262 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhh--
Confidence 999999999887766555555544333221 111111112 111 69999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHhHhhhhcCcccccccccccCCcCHHHH-----------------------------------
Q psy15185 361 GVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIIGI----------------------------------- 405 (611)
Q Consensus 361 ~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~----------------------------------- 405 (611)
++..++.+++.+|+.+++.||++|||+++|+++.|++...++..
T Consensus 263 -~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~ 341 (437)
T KOG1303|consen 263 -ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD 341 (437)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc
Confidence 99999999999999999999999999999999999941112110
Q ss_pred ---------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHH-HHH
Q psy15185 406 ---------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLWPDQFGPFKFILIRDILL-IIG 463 (611)
Q Consensus 406 ---------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i-~~~ 463 (611)
++|+.+|+|+++++++||+...++++++|+++|+..++.++...++ +.++.+ +++
T Consensus 342 ~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~---~~~~~~~~~~ 418 (437)
T KOG1303|consen 342 FKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKW---LLNWVIILVV 418 (437)
T ss_pred ccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHhhhhh
Confidence 7899999999999999999999999999999999996555433333 344555 788
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy15185 464 GIFALILGTFISLQDIVR 481 (611)
Q Consensus 464 Gi~~~v~gt~~si~~ii~ 481 (611)
|++.++.....++.+++.
T Consensus 419 ~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 419 GLLLSVLAAVGGVRSLII 436 (437)
T ss_pred hhhHHHHHHHHHHHHHhh
Confidence 888888888888877664
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=4.8e-43 Score=378.75 Aligned_cols=349 Identities=13% Similarity=0.131 Sum_probs=277.1
Q ss_pred ccCCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 126 VLEHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 126 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
..++++|..++.+|+++..+|.|+|+||+||+++||++|++.+++.++++.||.+++.+++.+.++|.+++..+|++..+
T Consensus 41 ~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~ 120 (473)
T PLN03074 41 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120 (473)
T ss_pred cccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999988777665544444443322
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
...+. ....+||+++.+..+...+++++.|+.|++..++++..+. ..++.+.|.+++..+.+|+.++|+++++
T Consensus 121 ~~~e~---~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~----~~~~~~~~~~i~~~v~~~~~~i~sl~~l 193 (473)
T PLN03074 121 QWFEV---LDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN----DNLDKRTWTYIFGACCATTVFIPSFHNY 193 (473)
T ss_pred HHHHH---HHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC----CCcCCCeEEeehHHHHHHHHHccCHHHH
Confidence 22111 1123489999999999999999999999999888877663 2567788888888888899999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhheeccc-CC-CCCCCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCCcccCccchhh
Q psy15185 286 APFSQLANVITFIGLGITMYYICQA-LP-PVSSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPASFGGYYGVL 363 (611)
Q Consensus 286 ~~~s~~~~~~i~~~~~~v~~~~~~~-~~-~~~~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~~~~~~~v~ 363 (611)
+++|.+|..++++....+....... .+ +.+ ...+.++..++..+++++|||++|+++||+++|||||++|++ +.
T Consensus 194 ~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~-~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~---~~ 269 (473)
T PLN03074 194 RIWSFLGLLMTTYTAWYMTIAALSHGQVEGVK-HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKY---IY 269 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccc---hH
Confidence 9999999987665433333332211 11 111 111223445666667799999999999999999999999998 78
Q ss_pred hhHHHHHHHHHHHHHhHhhhhcCccccc--ccccccCCcCHHH--H----------------------------------
Q psy15185 364 NQGMFAIVIMYVIMGFLGYVKYGSAAQG--SVTLNLPKEDIIG--I---------------------------------- 405 (611)
Q Consensus 364 ~~a~~i~~~~Y~~~g~~GY~~fG~~~~~--~il~n~p~~~~~~--~---------------------------------- 405 (611)
..++..++.+|..+|+.||+.|||++++ +.+.|+|++.+.. +
T Consensus 270 ~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~ 349 (473)
T PLN03074 270 LAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSI 349 (473)
T ss_pred HHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccH
Confidence 8899999999999999999999999764 5576788654211 0
Q ss_pred ---------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCC--C----------CCchhHHHHHHH
Q psy15185 406 ---------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLWPD--Q----------FGPFKFILIRDI 458 (611)
Q Consensus 406 ---------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~--~----------~~~~~~~~~~~~ 458 (611)
++|+.+|+|+.+++|+||+++++++|++|+++|++.++++ | .++.+|+.+.|+
T Consensus 350 ~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 429 (473)
T PLN03074 350 CLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNA 429 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhh
Confidence 7889999999999999999999999999999999987653 1 122344678999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhccc
Q psy15185 459 LLIIG-GIFALILGTFISLQDIVRSFKL 485 (611)
Q Consensus 459 ~i~~~-Gi~~~v~gt~~si~~ii~~~~~ 485 (611)
+++++ |+++++.|+|.|+.++++++++
T Consensus 430 ~iiv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 430 FVVVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred HHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence 99975 6666899999999999999976
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.8e-44 Score=388.72 Aligned_cols=336 Identities=25% Similarity=0.467 Sum_probs=285.6
Q ss_pred CCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVAL 208 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~ 208 (611)
||+|++++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.++|.+++++.+ ++++..+|+|++++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 58899999999999999999999999999999999999999999999999999999988754 1233569999999887
Q ss_pred hcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc--cchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 209 QQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA--VMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 209 ~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~--~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
||++++++++++.+.++|.+++|++..+|.+.++.+...+ ..+...+.++..++++|++++|+++.++
T Consensus 79 ----------G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~ 148 (409)
T PF01490_consen 79 ----------GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLR 148 (409)
T ss_pred ----------cccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHH
Confidence 9999999999999999999999999999999999987654 3556667777788889999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhheecccCC----CCCCC--CCcCCcchhhHHHHHHHHhcccccchhcchhhccCCcccCccc
Q psy15185 287 PFSQLANVITFIGLGITMYYICQALP----PVSSR--PYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPASFGGYY 360 (611)
Q Consensus 287 ~~s~~~~~~i~~~~~~v~~~~~~~~~----~~~~~--~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~~~~~~ 360 (611)
+.|.++.+++++.+.+..+......+ +.+.. ....++.+++.++|+++|||.||+++||+++|||+|+|+++..
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~ 228 (409)
T PF01490_consen 149 YLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMK 228 (409)
T ss_pred HHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccc
Confidence 99999999988753333332222211 11111 1234567899999999999999999999999999999988444
Q ss_pred hhhhhHHHHHHHHHHHHHhHhhhhcCcccccccccccCCcCHHHH-----------------------------------
Q psy15185 361 GVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIIGI----------------------------------- 405 (611)
Q Consensus 361 ~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~----------------------------------- 405 (611)
++...++.+++++|..+|+.||++||+++++|++.|+|++++...
T Consensus 229 ~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~ 308 (409)
T PF01490_consen 229 KVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAAS 308 (409)
T ss_pred eeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccc
Confidence 599999999999999999999999999999999999998763211
Q ss_pred ---------------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCCCchhH--HHHH
Q psy15185 406 ---------------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLWPDQFGPFKF--ILIR 456 (611)
Q Consensus 406 ---------------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~--~~~~ 456 (611)
++|..+||++++++++||++++.++|++|+++|++.+++++.+..++ +...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~ 388 (409)
T PF01490_consen 309 SRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSIL 388 (409)
T ss_pred cccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhcc
Confidence 78899999999999999999999999999999999987764333232 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15185 457 DILLIIGGIFALILGTFISL 476 (611)
Q Consensus 457 ~~~i~~~Gi~~~v~gt~~si 476 (611)
++..+++|++.++.|+|.++
T Consensus 389 ~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 389 NWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred ceEEEEEeeehhHHhHHHHc
Confidence 78889999999999999876
No 6
>KOG1305|consensus
Probab=100.00 E-value=4.5e-37 Score=323.30 Aligned_cols=330 Identities=18% Similarity=0.303 Sum_probs=276.4
Q ss_pred CCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
+++.|...+++|+.|+++|+|++++|+||++.|++.|++++.+++.++.++.+++.++.++.+++ +|+++++..
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~------ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER------TYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC------CHHHHHHHH
Confidence 45779999999999999999999999999999999999999999999999999999999875433 999999999
Q ss_pred HhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-cc-----hHH-H-HHHHHHHHHHHhhcc
Q psy15185 208 LQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-VM-----DVR-I-VMVLLLLPLIGINSI 279 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~~-----~~~-~-~~~i~~~~~~~l~~~ 279 (611)
+ |+.++....+.......| |++|+++++|.++.+...... ++ ..+ . +.++...++.|++..
T Consensus 77 ~----------g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~ 145 (411)
T KOG1305|consen 77 F----------GKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLL 145 (411)
T ss_pred c----------CCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHH
Confidence 8 788877777777777777 799999999999966655442 11 222 2 466788889999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhhheecccCC---CC-CCCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCCcc
Q psy15185 280 RNLKLLAPFSQLANVITFIGLGITMYYICQALP---PV-SSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS 355 (611)
Q Consensus 280 ~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~~~~---~~-~~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~ 355 (611)
|++..+.+.|.++.+++++.+.++.+....... .. ...+....+++....+++++|||.||.++.++++|||||++
T Consensus 146 k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~ 225 (411)
T KOG1305|consen 146 KNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV 225 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence 999999999999999999988888877665332 11 11222222368899999999999999999999999999965
Q ss_pred --cCccchhhhhHHHHHHHHHHHHHhHhhhhcCcccccccccccCCcCHHH------H----------------------
Q psy15185 356 --FGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIIG------I---------------------- 405 (611)
Q Consensus 356 --~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~------~---------------------- 405 (611)
+++ +...+...++.+|...|.+||++|||++.+|++.++|+++... .
T Consensus 226 ~~i~~---v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr 302 (411)
T KOG1305|consen 226 KKIQR---VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLR 302 (411)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHH
Confidence 555 8999999999999999999999999999999999998754220 0
Q ss_pred ----------------------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCCCchh
Q psy15185 406 ----------------------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLWPDQFGPFK 451 (611)
Q Consensus 406 ----------------------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~ 451 (611)
+.|+++|+++.+++++||+++..++|++|+++|++..++ +.
T Consensus 303 ~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~-----~~ 377 (411)
T KOG1305|consen 303 MNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK-----KS 377 (411)
T ss_pred HHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc-----cc
Confidence 678899999999999999999999999999999998865 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15185 452 FILIRDILLIIGGIFALILGTFISLQDIVRS 482 (611)
Q Consensus 452 ~~~~~~~~i~~~Gi~~~v~gt~~si~~ii~~ 482 (611)
+++...++..++|+..++.|+...+.++...
T Consensus 378 ~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 378 REPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555777888899999999999888887654
No 7
>KOG4303|consensus
Probab=100.00 E-value=1.4e-37 Score=303.07 Aligned_cols=340 Identities=18% Similarity=0.286 Sum_probs=297.7
Q ss_pred CCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCChhHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKR--VPILNYPDSMRV 206 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~--~~~~sy~~l~~~ 206 (611)
.|.+.+++..|..|++-|.=+++||+|....||. ++..++.++.++.||..+|++|..+-++..+ +..++|.+++..
T Consensus 115 ~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~ 193 (524)
T KOG4303|consen 115 EKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADF 193 (524)
T ss_pred CccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHH
Confidence 5778999999999999999999999999999985 9999999999999999999999987553111 123589999999
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
++ +| +.|...+.+.+++.++.+|+.|+++.+|.+++.++.. ..+.+-|+++....+.|.++++++|..+
T Consensus 194 C~--~P-------~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~--svd~~sWm~i~~a~LLpc~FLk~Lk~VS 262 (524)
T KOG4303|consen 194 CY--KP-------GLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL--SVDKASWMMITSASLLPCSFLKDLKIVS 262 (524)
T ss_pred hc--CC-------CcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC--CccccchhhhhhHHHhhhHHHHHHHHHH
Confidence 86 33 2455678889999999999999999999999887654 5678889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhheecccCCCCC--CCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCCcccCccchhhh
Q psy15185 287 PFSQLANVITFIGLGITMYYICQALPPVS--SRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPASFGGYYGVLN 364 (611)
Q Consensus 287 ~~s~~~~~~i~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~~~~~~~v~~ 364 (611)
.+|+..+++-++.-++++.|+.....++. ......+..++|..+|+++|+|..|...|+++.+|++|++|+. .+.
T Consensus 263 ~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~---Ml~ 339 (524)
T KOG4303|consen 263 RLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNV---MLK 339 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHhee---eee
Confidence 99999999988887777778876666553 3334456688999999999999999999999999999999998 899
Q ss_pred hHHHHHHHHHHHHHhHhhhhcCcccccccccccCCcCHHH--H-------------------------------------
Q psy15185 365 QGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIIG--I------------------------------------- 405 (611)
Q Consensus 365 ~a~~i~~~~Y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~--~------------------------------------- 405 (611)
++-+.+.++=..+|.+||++||+.+|..|++|+|+..+.. +
T Consensus 340 WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fps 419 (524)
T KOG4303|consen 340 WSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPS 419 (524)
T ss_pred hHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCce
Confidence 9999999999999999999999999999999999755321 0
Q ss_pred ------------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHH
Q psy15185 406 ------------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLWPDQFGPFKFILIRDILLI 461 (611)
Q Consensus 406 ------------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~i~ 461 (611)
++|+++|.|..+++++|++.|+.++|+.|++||+++.++. ..+.++.++..++
T Consensus 420 cys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~---L~~~e~~fD~~Ii 496 (524)
T KOG4303|consen 420 CYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT---LNNFEKRFDQGII 496 (524)
T ss_pred eeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh---hhhHHHhhheeEE
Confidence 7899999999999999999999999999999999998874 4556788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Q psy15185 462 IGGIFALILGTFISLQDIVRSFKLD 486 (611)
Q Consensus 462 ~~Gi~~~v~gt~~si~~ii~~~~~~ 486 (611)
++|..+++.|.|.+..+++++++..
T Consensus 497 ~~G~~~~vsG~y~S~~~Li~A~~~~ 521 (524)
T KOG4303|consen 497 IMGCSVCVSGVYFSSMELIRAINSA 521 (524)
T ss_pred EEeeeEEEEeEehhhHHHHHHHhcc
Confidence 9999999999999999999999754
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.97 E-value=9.5e-29 Score=263.81 Aligned_cols=330 Identities=16% Similarity=0.191 Sum_probs=272.9
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
.+.+.+..+++.++.+++||+|+|++|++++..|+.++++++++.+..++++.+++.|+..+.+++ ..++.++.++
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~~~ 80 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLVED 80 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHHHH
Confidence 346778899999999999999999999999999999999999999999999999999999875432 2389999999
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-c-chHHHHHHHHHHHHHHhhcccccch
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-V-MDVRIVMVLLLLPLIGINSIRNLKL 284 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~-~~~~~~~~i~~~~~~~l~~~~~l~~ 284 (611)
.+ ||+++++++++..+.+++.+.+|.+..+|.++..++...+ . .+++...+++..++.++++.++...
T Consensus 81 ~~----------G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~ 150 (415)
T COG0814 81 YL----------GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAV 150 (415)
T ss_pred Hh----------CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHH
Confidence 88 9999999999999999999999999999999999998655 3 6788888889999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhheecccCCCC-CCCC-C-cCCcchhhHHHHHHHHhcccccchhcchhhccCCcc--cCcc
Q psy15185 285 LAPFSQLANVITFIGLGITMYYICQALPPV-SSRP-Y-FGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS--FGGY 359 (611)
Q Consensus 285 l~~~s~~~~~~i~~~~~~v~~~~~~~~~~~-~~~~-~-~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~--~~~~ 359 (611)
++..+.+....+.+.++...+......++. ...+ . ...+..+..++|+++|||+||+++|++++|||++++ .+|
T Consensus 151 lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k- 229 (415)
T COG0814 151 LKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK- 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHH-
Confidence 999999999988877776666554331111 1111 1 245788899999999999999999999999998755 666
Q ss_pred chhhhhHHHHHHHHHHHHHhHhhhhcCcccccccccccCCcCHHHH----------------------------------
Q psy15185 360 YGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIIGI---------------------------------- 405 (611)
Q Consensus 360 ~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~~~~il~n~p~~~~~~~---------------------------------- 405 (611)
+...+..+..++|+.+++++|..+|+.+.++++.+.++++...+
T Consensus 230 --~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~ 307 (415)
T COG0814 230 --AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGL 307 (415)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhH
Confidence 89999999999999999999999999999999999987765431
Q ss_pred -------------------------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCCC
Q psy15185 406 -------------------------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLWPDQFG 448 (611)
Q Consensus 406 -------------------------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~~ 448 (611)
.++...|..+.+.+.+|+.....+.++.|...+.+....++.+
T Consensus 308 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~ 387 (415)
T COG0814 308 FEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYG 387 (415)
T ss_pred HHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecC
Confidence 4455667777788888888888888888887776654433211
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15185 449 PFKFILIRDILLIIGGIFALILGTFISL 476 (611)
Q Consensus 449 ~~~~~~~~~~~i~~~Gi~~~v~gt~~si 476 (611)
.. +...++++++|+..++.-.+...
T Consensus 388 g~---~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 388 GN---FLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred CC---chhHHHHHHHHHHHHHHHHHHHh
Confidence 11 14678888899888877666543
No 9
>KOG1304|consensus
Probab=99.94 E-value=3e-27 Score=245.81 Aligned_cols=103 Identities=48% Similarity=0.922 Sum_probs=102.1
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccCCCCchHHHHHHhhcCChhhhhhhhhhhHHHHHHHH
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLI 80 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~v~~~~~ 80 (611)
||.||||+|||.|++.++++|++|+||||+||||+|+||||.+++.++|+|.++.|.+.||.|.|.+|+++|.+||++++
T Consensus 68 lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~ 147 (449)
T KOG1304|consen 68 LPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLV 147 (449)
T ss_pred ChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHhhhcccccccce
Q psy15185 81 VYQLGICCVYIMFVATNIKPVSI 103 (611)
Q Consensus 81 ~~~~g~~~vy~~~ia~nl~~v~~ 103 (611)
++|+|+||||++|+|+|+||+.|
T Consensus 148 i~QlGfc~vY~VFva~nl~~i~~ 170 (449)
T KOG1304|consen 148 ITQLGFCCVYLVFVATNLKQIVD 170 (449)
T ss_pred HHHhchhhEEeeeHHhhHHHHHh
Confidence 99999999999999999999987
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.82 E-value=1.5e-18 Score=184.27 Aligned_cols=318 Identities=15% Similarity=0.174 Sum_probs=219.8
Q ss_pred CCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHh
Q psy15185 130 ATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQ 209 (611)
Q Consensus 130 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~ 209 (611)
+.+.+++++.+..+.||+|+|+||.+.+..|..++++++++++...++|..++.|...+.++ ..++.+++++.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~l- 75 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYL- 75 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHh-
Confidence 45789999999999999999999999999999999999999999999999999998876432 469999999998
Q ss_pred cCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-cchHHHHHHHHHHHHHHhhcccccchhhhH
Q psy15185 210 QGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-VMDVRIVMVLLLLPLIGINSIRNLKLLAPF 288 (611)
Q Consensus 210 ~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~ 288 (611)
||.++++..++..+..++.+++|..-.++.+++.+....+ +.+.+...+++.+.+..+... ..+.....
T Consensus 76 ---------G~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~ 145 (394)
T PF03222_consen 76 ---------GKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTKAVDRI 145 (394)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 9999999999999999999999999999999999987664 444444433333333222222 22233334
Q ss_pred HHHHHHHHHHHHHhhhheecccC--CCCCC-CCCcCCcchhhHHHHHHHHhcccccchhcchhhcc-CCcccCccchhhh
Q psy15185 289 SQLANVITFIGLGITMYYICQAL--PPVSS-RPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMK-TPASFGGYYGVLN 364 (611)
Q Consensus 289 s~~~~~~i~~~~~~v~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk-~p~~~~~~~~v~~ 364 (611)
+..-+...+..++....+...+. ++..+ .+...++......++++.+||..|+++|++.+.++ |++|.+| ++.
T Consensus 146 n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~---ai~ 222 (394)
T PF03222_consen 146 NRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK---AII 222 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHH---HHH
Confidence 43333333333333332222111 11111 22345678889999999999999999999999998 4566666 888
Q ss_pred hHHHHHHHHHHHHHhHhhhhc-----------Cccccc--ccccccCCcCHHH---H-----------------------
Q psy15185 365 QGMFAIVIMYVIMGFLGYVKY-----------GSAAQG--SVTLNLPKEDIIG---I----------------------- 405 (611)
Q Consensus 365 ~a~~i~~~~Y~~~g~~GY~~f-----------G~~~~~--~il~n~p~~~~~~---~----------------------- 405 (611)
.+..+..++|++.-...-..- +++..+ ..+.+...+.... .
T Consensus 223 ~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 223 IGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887543332211 111111 1122222222110 0
Q ss_pred ------------------------HHHHhccc-hhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCCCchh--HHHHHHH
Q psy15185 406 ------------------------VLAVLVPR-LELFISLFGAFCLSALGIAFPGIIEMCVLWPDQFGPFK--FILIRDI 458 (611)
Q Consensus 406 ------------------------iiA~~ip~-~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~--~~~~~~~ 458 (611)
++|...|+ |-..+++.| ...+.+..++|+++.++.+++++....+ --+....
T Consensus 303 d~~k~~~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~ 381 (394)
T PF03222_consen 303 DLFKLKNNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLL 381 (394)
T ss_pred HHHcCCccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHH
Confidence 66777776 788999999 9999999999999999998775332211 1233444
Q ss_pred HHHHHHHHH
Q psy15185 459 LLIIGGIFA 467 (611)
Q Consensus 459 ~i~~~Gi~~ 467 (611)
.++++|++.
T Consensus 382 ~~~~~~i~i 390 (394)
T PF03222_consen 382 LVIIFGILI 390 (394)
T ss_pred HHHHHHHHH
Confidence 455555544
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.80 E-value=1.6e-17 Score=174.88 Aligned_cols=296 Identities=9% Similarity=0.057 Sum_probs=208.3
Q ss_pred CCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
+++.+.+.+++.+..++||+|+|++|.+-++.|+.++++++++++....||..++.|...+.+ +..++..++|+.
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-----~g~~~~tma~~~ 82 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-----IGSSFDTITKDL 82 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHH
Confidence 357789999999999999999999999999999999999999999999999999999977542 235899999999
Q ss_pred HhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhh
Q psy15185 208 LQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAP 287 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~ 287 (611)
+ ||.|+++..++..+..++.+++|+.-.+|.+.+.++....+.+.+.-.+++.+++....... .+....
T Consensus 83 L----------G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~g-t~~vd~ 151 (414)
T PRK10483 83 L----------GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLS-TKAVSR 151 (414)
T ss_pred c----------ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh-hhHHHH
Confidence 8 89999999999999999999999999999999999763213344444444444444444432 244444
Q ss_pred HHHHHHHHHHHHHHhhhheecccCC--CCCC--CCCcCCcchhhHHHHHHHHhcccccchhcchhhccC-CcccCccchh
Q psy15185 288 FSQLANVITFIGLGITMYYICQALP--PVSS--RPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKT-PASFGGYYGV 362 (611)
Q Consensus 288 ~s~~~~~~i~~~~~~v~~~~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~-p~~~~~~~~v 362 (611)
++-+-....+..++..+.....+.. +..+ ......+......++++.+||+.|+++|++.+.+++ ++|.++ +
T Consensus 152 ~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~---~ 228 (414)
T PRK10483 152 MTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK---C 228 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH---H
Confidence 4433333332222222222111111 0001 111122456778899999999999999999999885 466655 8
Q ss_pred hhhHHHHHHHHHHHHHhHhhhhcC-----------ccccccccccc---CCcCHHHH-----------------------
Q psy15185 363 LNQGMFAIVIMYVIMGFLGYVKYG-----------SAAQGSVTLNL---PKEDIIGI----------------------- 405 (611)
Q Consensus 363 ~~~a~~i~~~~Y~~~g~~GY~~fG-----------~~~~~~il~n~---p~~~~~~~----------------------- 405 (611)
+..+..+..++|++.=......-+ ++++ ..+..+ .++.....
T Consensus 229 I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d 307 (414)
T PRK10483 229 LVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFD 307 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999884443333322 2211 111111 11111100
Q ss_pred ---------------------------HHHHhccc-hhhhHHHHhhhHHHHHHHHHHHHHHHHHcCC
Q psy15185 406 ---------------------------VLAVLVPR-LELFISLFGAFCLSALGIAFPGIIEMCVLWP 444 (611)
Q Consensus 406 ---------------------------iiA~~ip~-~~~il~l~Ga~~~~~l~filP~l~~l~~~~~ 444 (611)
++|...|+ |-..++..|.. +..+.-++|+++.++.|++
T Consensus 308 ~l~D~~k~~~~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 308 YLADLFGFDDSAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHhCCCCccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 77888887 88899999976 6777789999999999865
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.78 E-value=3.2e-17 Score=173.38 Aligned_cols=317 Identities=13% Similarity=0.132 Sum_probs=213.8
Q ss_pred CCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhc
Q psy15185 131 TTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQ 210 (611)
Q Consensus 131 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~ 210 (611)
.+...+++.+..|.||+|+|+||.+.+..|+.++++++++++.+..|+.+++.|+..+ .++..++.+++|+.+
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~-----~~~~~~~~~~a~~~L-- 75 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH-----VPADTGLGTLAKRYL-- 75 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCCCHHHHHHHHh--
Confidence 3678899999999999999999999999999999999999999999999999996543 223468999999998
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-cchHHHHHHHHHHHHHHhhcccccchhhhHH
Q psy15185 211 GPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-VMDVRIVMVLLLLPLIGINSIRNLKLLAPFS 289 (611)
Q Consensus 211 G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s 289 (611)
||.|+++..++..+..+..+.+|..-.++.+.+.++.+.+ +.+.....+++.+........ ..|...+++
T Consensus 76 --------G~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n 146 (403)
T PRK15132 76 --------GRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCV-GTSSVDLFN 146 (403)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhc-cHHHHHHHH
Confidence 9999999999999999999999999999999998876443 333333333333333222222 223333333
Q ss_pred HHHHHHHHHHHHhhhheecccCCCCCCCCC---cCCcchhhHHHHHHHHhcccccchhcchhhccC-CcccCccchhhhh
Q psy15185 290 QLANVITFIGLGITMYYICQALPPVSSRPY---FGDPRNWNLFIGTTLFALEAVGVVIALENNMKT-PASFGGYYGVLNQ 365 (611)
Q Consensus 290 ~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~-p~~~~~~~~v~~~ 365 (611)
-+-+...+..++....+.. |+++.... ..+..-....++++.+||+.|+++|++.+.+++ ++|.+| ++..
T Consensus 147 ~~L~~~~ii~~~~~~~~l~---p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k---~i~~ 220 (403)
T PRK15132 147 RFLFSAKIIFLVVMLALMM---PHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRW---VFII 220 (403)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHH---HHHH
Confidence 3322222222222222221 22111100 111224788899999999999999999999875 456665 8888
Q ss_pred HHHHHHHHHHHHHhHhhhhcCccc-----cc-----cccccc---CCcCHHHH---------------------------
Q psy15185 366 GMFAIVIMYVIMGFLGYVKYGSAA-----QG-----SVTLNL---PKEDIIGI--------------------------- 405 (611)
Q Consensus 366 a~~i~~~~Y~~~g~~GY~~fG~~~-----~~-----~il~n~---p~~~~~~~--------------------------- 405 (611)
+..+..++|+..=......-+.+. ++ +++..+ .++.+...
T Consensus 221 Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 300 (403)
T PRK15132 221 GSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLAD 300 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888877666665544331 11 122222 11221100
Q ss_pred -----------------------HHHHhccc-hhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCCCchh--HHHHHHHH
Q psy15185 406 -----------------------VLAVLVPR-LELFISLFGAFCLSALGIAFPGIIEMCVLWPDQFGPFK--FILIRDIL 459 (611)
Q Consensus 406 -----------------------iiA~~ip~-~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~--~~~~~~~~ 459 (611)
++|...|+ |...+++.|. ..+.+.+++|+++-++.+++++.+..+ -.+..+++
T Consensus 301 ~~~~~~~~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~ 379 (403)
T PRK15132 301 LFQRRNTVGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALAL 379 (403)
T ss_pred HHccCccccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHH
Confidence 67777887 7889999886 578999999999999988654111111 12445666
Q ss_pred HHHHHHHHHHH
Q psy15185 460 LIIGGIFALIL 470 (611)
Q Consensus 460 i~~~Gi~~~v~ 470 (611)
++++|++..+.
T Consensus 380 v~~~G~~~i~~ 390 (403)
T PRK15132 380 VFLCGIAVIGI 390 (403)
T ss_pred HHHHHHHHHHH
Confidence 66667665543
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.78 E-value=6.8e-18 Score=180.17 Aligned_cols=288 Identities=11% Similarity=0.082 Sum_probs=207.0
Q ss_pred HHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhh
Q psy15185 137 LIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLR 216 (611)
Q Consensus 137 ~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~ 216 (611)
+...+++++|+|++++|.++++.|...+.+.+++.+.++.++...+.|...+.+ +..++.+..++.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-----~~~~~~~~~~~~~-------- 69 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-----GGASFNTIAKDLL-------- 69 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh--------
Confidence 345678999999999999999999999999999999999999999999877642 2358999999988
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-cchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Q psy15185 217 FAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-VMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVI 295 (611)
Q Consensus 217 ~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~ 295 (611)
||++++++.+...+.++..+.+|.+..++.+.++++.... ..+.+...+++.+.+.++ ..+..+....++.+.+..
T Consensus 70 --G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~ 146 (381)
T TIGR00837 70 --GKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFG 146 (381)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875433 344444433333333333 334566777777766666
Q ss_pred HHHHHHhhhheecccCC--CCCCCC-CcCCcchhhHHHHHHHHhcccccchhcchhhccCC-cccCccchhhhhHHHHHH
Q psy15185 296 TFIGLGITMYYICQALP--PVSSRP-YFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTP-ASFGGYYGVLNQGMFAIV 371 (611)
Q Consensus 296 i~~~~~~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p-~~~~~~~~v~~~a~~i~~ 371 (611)
.+..++........+.. +..+.. ....+.++...++...++|++|.+++++.++++++ ||.+| ++..+..+++
T Consensus 147 ~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~r---aii~g~~i~~ 223 (381)
T TIGR00837 147 KIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKK---SILIGSAIAL 223 (381)
T ss_pred HHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHH---HHHHHHHHHH
Confidence 55544433332221111 111110 01245677788899999999999999999999754 45555 8999999999
Q ss_pred HHHHHHHhHhhhhcCccccc-------c------cccc-cCCcCHH---HH-----------------------------
Q psy15185 372 IMYVIMGFLGYVKYGSAAQG-------S------VTLN-LPKEDII---GI----------------------------- 405 (611)
Q Consensus 372 ~~Y~~~g~~GY~~fG~~~~~-------~------il~n-~p~~~~~---~~----------------------------- 405 (611)
++|+++........+.+.-. + ...+ +. +.+. ..
T Consensus 224 ~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~ 302 (381)
T TIGR00837 224 VLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLK-SSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD 302 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999877766665432111 1 0111 11 1110 00
Q ss_pred ------------------HHHHhccchh-hhHHHHhhhHHHHHHHHHHHHHHHHHcCCC
Q psy15185 406 ------------------VLAVLVPRLE-LFISLFGAFCLSALGIAFPGIIEMCVLWPD 445 (611)
Q Consensus 406 ------------------iiA~~ip~~~-~il~l~Ga~~~~~l~filP~l~~l~~~~~~ 445 (611)
++|.+.|+.. ..++..| +++..+.+++|++++++.|+++
T Consensus 303 ~~~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 303 DSKKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred cccCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 6788888866 8999999 8899999999999999987653
No 14
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.77 E-value=5.5e-17 Score=170.68 Aligned_cols=295 Identities=12% Similarity=0.088 Sum_probs=200.6
Q ss_pred CCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVAL 208 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~ 208 (611)
+|.+...+...+..++||+|+|++|.+-++.|+.++++++++++....||..++.|+..+.+ +..++..++|+.+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-----~g~~l~tma~~~L 81 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-----VGSSFNTITKDLI 81 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHc
Confidence 35578889999999999999999999999999999999999999999999999999987643 3468999999998
Q ss_pred hcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-cchHHHHHHHHHHHHHHhhcccccchhhh
Q psy15185 209 QQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-VMDVRIVMVLLLLPLIGINSIRNLKLLAP 287 (611)
Q Consensus 209 ~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~l~~l~~ 287 (611)
||.|+++..++..+..++.+++|+.-.++.+.+.++...+ +.+.+.-.+++.+++....... .+....
T Consensus 82 ----------G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~g-t~~vd~ 150 (415)
T PRK09664 82 ----------GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWIS-SLAASR 150 (415)
T ss_pred ----------ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhc-hhHHHH
Confidence 9999999999999999999999999999999999875322 3344443444444444443332 244433
Q ss_pred HHHHHHHHHHHHHHhhhheecccC--CCCCCCCCcC----CcchhhHHHHHHHHhcccccchhcchhhccC-CcccCccc
Q psy15185 288 FSQLANVITFIGLGITMYYICQAL--PPVSSRPYFG----DPRNWNLFIGTTLFALEAVGVVIALENNMKT-PASFGGYY 360 (611)
Q Consensus 288 ~s~~~~~~i~~~~~~v~~~~~~~~--~~~~~~~~~~----~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~-p~~~~~~~ 360 (611)
.+-+=....+..++..+.....+. ....+.+... .+......++++.+||+.|+++|++.+.+++ ++|.++
T Consensus 151 ~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k-- 228 (415)
T PRK09664 151 ITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIK-- 228 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHH--
Confidence 333333222222222221111110 0111111111 1234777899999999999999999999874 355555
Q ss_pred hhhhhHHHHHHHHHHHHHhH--hh---------hhcCcccccccc---cccCCcCHHHH---------------------
Q psy15185 361 GVLNQGMFAIVIMYVIMGFL--GY---------VKYGSAAQGSVT---LNLPKEDIIGI--------------------- 405 (611)
Q Consensus 361 ~v~~~a~~i~~~~Y~~~g~~--GY---------~~fG~~~~~~il---~n~p~~~~~~~--------------------- 405 (611)
++..+..+..++|++-=.+ |- ..-|+++..-+. .+ .++.+...
T Consensus 229 -aIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL 306 (415)
T PRK09664 229 -SVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGL 306 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777443222 21 112222222111 11 11111100
Q ss_pred -----------------------------HHHHhccc-hhhhHHHHhhhHHHHHHHHHHHHHHHHHcCC
Q psy15185 406 -----------------------------VLAVLVPR-LELFISLFGAFCLSALGIAFPGIIEMCVLWP 444 (611)
Q Consensus 406 -----------------------------iiA~~ip~-~~~il~l~Ga~~~~~l~filP~l~~l~~~~~ 444 (611)
+++.+.|+ |-..++..|.. ++.+.-++|+++-++.|++
T Consensus 307 ~D~l~D~~~~~~~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 307 FDYLADLFKIDNSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHhCCCCccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 67888888 88899999985 6688889999999999865
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.59 E-value=2.1e-13 Score=143.74 Aligned_cols=316 Identities=12% Similarity=0.144 Sum_probs=210.8
Q ss_pred HHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhh
Q psy15185 138 IHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRF 217 (611)
Q Consensus 138 ~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~ 217 (611)
..+..+.||+|+|+||-.....|..++++++++...+++++.+.+.|..... +++..++.+++++.+
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~----~~~~~~i~~v~~~~l--------- 92 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG----SNPSGNITETVEEHF--------- 92 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCCCCHHHHHHHHc---------
Confidence 7899999999999999999999999999999999999999999999987643 234568999999998
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc--cchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Q psy15185 218 AANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA--VMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVI 295 (611)
Q Consensus 218 ~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~--~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~ 295 (611)
||.++.+..++..+..+..+.+|...+.+.+.+.+.+..+ ..+++...+++.+.+....... -+..-+++-+-+.-
T Consensus 93 -G~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~ 170 (443)
T PRK13629 93 -GKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWP 170 (443)
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888876554332 3344444444444443333332 24444444333333
Q ss_pred HHHHHHhhhheecccC--CCCCCCC-----CcCC---cchhhHHHHHHHHhcccccchhcchhhccCC-c-----c--cC
Q psy15185 296 TFIGLGITMYYICQAL--PPVSSRP-----YFGD---PRNWNLFIGTTLFALEAVGVVIALENNMKTP-A-----S--FG 357 (611)
Q Consensus 296 i~~~~~~v~~~~~~~~--~~~~~~~-----~~~~---~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p-~-----~--~~ 357 (611)
.+..++....+.+.+. .+..+.+ ...+ .......+++++|||..|+++|++...+|+. + + -+
T Consensus 171 ~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~ 250 (443)
T PRK13629 171 FIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTER 250 (443)
T ss_pred HHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHH
Confidence 3333333333322111 0111111 1111 1346778899999999999999998884322 1 1 23
Q ss_pred ccchhhhhHHHHHHHHHHHHHhHhhhhcCccc-----cccc--ccc----cCC---c-----CHHHH-------------
Q psy15185 358 GYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAA-----QGSV--TLN----LPK---E-----DIIGI------------- 405 (611)
Q Consensus 358 ~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~-----~~~i--l~n----~p~---~-----~~~~~------------- 405 (611)
|.++++..+..+..++|+..-+.+-..-+++. ++|+ +.. +++ . .....
T Consensus 251 k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TS 330 (443)
T PRK13629 251 KCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKS 330 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHH
Confidence 33448899999998888888877777766432 1222 211 222 1 11110
Q ss_pred ----------------------------------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHH
Q psy15185 406 ----------------------------------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEM 439 (611)
Q Consensus 406 ----------------------------------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l 439 (611)
+.|..-|++-.+++-+|+-....+.|++|...-.
T Consensus 331 FlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~ 410 (443)
T PRK13629 331 FFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIR 410 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4556678888888877788888899999998876
Q ss_pred HHcCCCCCCchhHH-HHHHHHHHHHHHHHHHHHHH
Q psy15185 440 CVLWPDQFGPFKFI-LIRDILLIIGGIFALILGTF 473 (611)
Q Consensus 440 ~~~~~~~~~~~~~~-~~~~~~i~~~Gi~~~v~gt~ 473 (611)
|.-.-+ ++| +..|++++++|++......|
T Consensus 411 kvp~l~-----~yr~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 411 KAPSLA-----KYRGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred ccHHHH-----HhCCCchhHHHHHHHHHHHHHHHH
Confidence 653222 222 22478888899887655444
No 16
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.45 E-value=3e-12 Score=136.03 Aligned_cols=292 Identities=14% Similarity=0.151 Sum_probs=196.9
Q ss_pred HHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchh
Q psy15185 136 TLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCL 215 (611)
Q Consensus 136 a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~ 215 (611)
=.+.+..+++|+|+|++|....+.||+..++..++...+.+++.+++.|.... .+.+..++.|+.++.+
T Consensus 8 w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~----~~~p~~~i~~~~~~~f------- 76 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLS----SKNPCEDITEVVEEHF------- 76 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHc-------
Confidence 35678899999999999999999999999999999999999999999987543 2233568999999998
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-cchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Q psy15185 216 RFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-VMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANV 294 (611)
Q Consensus 216 ~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~ 294 (611)
||+++.+..+...+..+..+.+|....++.+.+.+..... +.+.+....+..+...........+....++.+-+.
T Consensus 77 ---Gk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~ 153 (397)
T TIGR00814 77 ---GKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVF 153 (397)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888876443 333443322222222122223355666666655554
Q ss_pred HHHHHHHhhhheecccC--CCCCCCCC-cCCcchhhHHHHHHHHhcccccchhcchhh----ccCCc-ccCccchhhhhH
Q psy15185 295 ITFIGLGITMYYICQAL--PPVSSRPY-FGDPRNWNLFIGTTLFALEAVGVVIALENN----MKTPA-SFGGYYGVLNQG 366 (611)
Q Consensus 295 ~i~~~~~~v~~~~~~~~--~~~~~~~~-~~~~~~~~~~~g~~~faf~~~~~i~~i~~~----mk~p~-~~~~~~~v~~~a 366 (611)
..+..++....+...+. .+....+. ...+.+.....+...+||.+|+++++...+ .++|+ .-+|..+++..+
T Consensus 154 ~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~ 233 (397)
T TIGR00814 154 PLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGA 233 (397)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 44444443333333221 11111111 123567889999999999999999999733 33221 012223388889
Q ss_pred HHHHHHHHHHHHhHhhhhcCcccc-----cc--ccccc---CCcCHHHH-------------------------------
Q psy15185 367 MFAIVIMYVIMGFLGYVKYGSAAQ-----GS--VTLNL---PKEDIIGI------------------------------- 405 (611)
Q Consensus 367 ~~i~~~~Y~~~g~~GY~~fG~~~~-----~~--il~n~---p~~~~~~~------------------------------- 405 (611)
..+..++|+..-+.+-...+++.- +| ++..+ .+++....
T Consensus 234 ~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~ 313 (397)
T TIGR00814 234 SLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLN 313 (397)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999988888888887777765421 11 11100 11111100
Q ss_pred ---------------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q psy15185 406 ---------------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCV 441 (611)
Q Consensus 406 ---------------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~ 441 (611)
..|..-|++-.+++-+|+-....+.|++|...-.|.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 314 SLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 455667888888887777777888999998876665
No 17
>KOG4303|consensus
Probab=99.39 E-value=1.2e-13 Score=136.21 Aligned_cols=114 Identities=27% Similarity=0.424 Sum_probs=96.5
Q ss_pred hhhhccccCccccccccchhhhHHHHHHHHHHHHHHHHHhhhccccccceeccCCCCcHHHHHHHHHHHHHHHHHhcccc
Q psy15185 493 IALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDILAQSVNAIFAVAIFISYGLQC 572 (611)
Q Consensus 493 ~pi~~~mk~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~~~~~i~~nlp~~~~~~~~~~~~~~~~~~~~ypl~~ 572 (611)
-.+|.+||+|++|+. +++|+.+....++..+|..||++|||+||+.||.||| +..+...++++++++.+++|||.+
T Consensus 322 P~LEGNM~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp-~qsfk~~VN~fLV~KALLSYPLPf 397 (524)
T KOG4303|consen 322 PNLEGNMKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP-NQSFKILVNLFLVVKALLSYPLPF 397 (524)
T ss_pred cccccccCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC-ccchhhhhhHHHHHHHHHcCCchH
Confidence 359999999999999 9999999999999999999999999999999999999 457899999999999999999999
Q ss_pred chhHHHHHhhhhhhhcccC-C-----CCchhHHhhhheeEEeec
Q psy15185 573 YVPVEIIWSRYLKQHLENA-T-----PGKKLLVEYIMRVSVVGS 610 (611)
Q Consensus 573 ~~~~~i~~~~~~~~~~~~~-~-----~~~~~~~~~~~r~~lv~~ 610 (611)
|.++|.++++.+....... | .++-+.|.+.+|..+|++
T Consensus 398 yAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvf 441 (524)
T KOG4303|consen 398 YAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVF 441 (524)
T ss_pred HHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHH
Confidence 9999999998553321110 0 123346788888887753
No 18
>KOG1303|consensus
Probab=99.31 E-value=6.4e-12 Score=133.79 Aligned_cols=129 Identities=16% Similarity=0.306 Sum_probs=102.3
Q ss_pred HHHHHHHHhhcccCCccchhhhhhccccCccccccccchhhhHHHHHHHHHHHHHHHHHhhhccccccceeccCCCCcHH
Q psy15185 473 FISLQDIVRSFKLDLSMNYVIALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIL 552 (611)
Q Consensus 473 ~~si~~ii~~~~~~~~~~~~~pi~~~mk~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~~~~~i~~nlp~~~~~ 552 (611)
..++-.+...|.+|. ...-||++||+|++|+| .+..+++++++.|..++++||++|||+++++++.|+++..++
T Consensus 231 f~a~g~iaFaf~gH~---v~peIq~tMk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~ 304 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHA---VLPEIQHTMKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWL 304 (437)
T ss_pred hhhhhheeeeecCCe---eeeehHhhcCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhH
Confidence 344555556777774 44569999999999999 999999999999999999999999999999999999533589
Q ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHhhhhhhhcccCCCCchhHHhhhheeEEee
Q psy15185 553 AQSVNAIFAVAIFISYGLQCYVPVEIIWSRYLKQHLENATPGKKLLVEYIMRVSVVG 609 (611)
Q Consensus 553 ~~~~~~~~~~~~~~~ypl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~lv~ 609 (611)
...+++++.+|.+.+|.+...|..+.+|+. .+....+ ..+...+.|.++|+.+++
T Consensus 305 ~~~ani~i~~h~i~s~~i~a~pl~~~~E~~-~~~~~~~-~~~~~~~~R~~~Rt~~v~ 359 (437)
T KOG1303|consen 305 IALANILIVLHLIGSYQIYAQPLFDVVEKL-IGVKHPD-FKKRSLVLRLLVRTFFVA 359 (437)
T ss_pred HHHHHHHHHHHHhhhhhhhhcchHHHHHHH-hccCCcc-ccccccceeeehhhHHHH
Confidence 999999999999999999999888888874 3322111 111223467788877654
No 19
>PLN03074 auxin influx permease; Provisional
Probab=99.30 E-value=1.7e-12 Score=141.23 Aligned_cols=118 Identities=17% Similarity=0.283 Sum_probs=93.7
Q ss_pred HHhhcccCCccchhhhhhccccCccccccccchhhhHHHHHHHHHHHHHHHHHhhhcccccc-ce-eccCCCCcHHHHHH
Q psy15185 479 IVRSFKLDLSMNYVIALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQG-SV-TLNLPKEDILAQSV 556 (611)
Q Consensus 479 ii~~~~~~~~~~~~~pi~~~mk~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~~~~-~i-~~nlp~~~~~~~~~ 556 (611)
++..|+++. +..|+|++||||++|++ ++..++..++.+|+.+|+.||++|||++++ ++ +.|+|++ ...+++
T Consensus 242 i~faf~g~~---v~~~I~~~M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-~~~~~~ 314 (473)
T PLN03074 242 ILYTFGGHA---VTVEIMHAMWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-GWRDAA 314 (473)
T ss_pred HHHHhcccc---cHHHHHHhccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-hHHHHH
Confidence 456777764 78899999999999998 899999999999999999999999999875 44 4458854 468999
Q ss_pred HHHHHHHHHHHhccccchhHHHHHhhhhhhhcccCCCCchhHHhhhheeEEee
Q psy15185 557 NAIFAVAIFISYGLQCYVPVEIIWSRYLKQHLENATPGKKLLVEYIMRVSVVG 609 (611)
Q Consensus 557 ~~~~~~~~~~~ypl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~lv~ 609 (611)
+++++++++++||++++|..++ +++.++.. .++..+.++++|+.++.
T Consensus 315 ~~~~~i~~~~sy~l~~~p~~~~-~e~~~~~~-----~~k~~~~r~~~R~~lv~ 361 (473)
T PLN03074 315 VILMLIHQFITFGFACTPLYFV-WEKAIGVH-----DTKSICLRALARLPVVV 361 (473)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH-HHHHhccc-----ccccHHHHHHHHHHHHH
Confidence 9999999999999999866554 44434322 12344678888887654
No 20
>PTZ00206 amino acid transporter; Provisional
Probab=99.27 E-value=3e-12 Score=139.71 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=80.3
Q ss_pred hhhhhhccccC--ccccccccchhhhHHHHHHHHHHHHHHHHHhhhccccccceeccC-CCCcHHHHHHHHHHHHHHHHH
Q psy15185 491 YVIALENNMKT--PASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNL-PKEDILAQSVNAIFAVAIFIS 567 (611)
Q Consensus 491 ~~~pi~~~mk~--p~~f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~~~~~i~~nl-p~~~~~~~~~~~~~~~~~~~~ 567 (611)
.+.|+|++||| |++|.+ +++.++.+++++|..+|++||++|||+++++|++|+ |.++....++++.++++++++
T Consensus 274 ~~~~i~~~M~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~s 350 (467)
T PTZ00206 274 TAYEVYMDMTNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVS 350 (467)
T ss_pred hhHHHHHhhcccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHh
Confidence 46789999987 557777 999999999999999999999999999999999999 667788999999999999999
Q ss_pred hccccchhHHHHHhh
Q psy15185 568 YGLQCYVPVEIIWSR 582 (611)
Q Consensus 568 ypl~~~~~~~i~~~~ 582 (611)
|||+++|+-+.+++.
T Consensus 351 ypL~~~p~r~~i~~~ 365 (467)
T PTZ00206 351 YALLGMACRNALYDV 365 (467)
T ss_pred hhhhhhhHHHHHHHH
Confidence 999999877766653
No 21
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.24 E-value=1.6e-12 Score=140.15 Aligned_cols=119 Identities=24% Similarity=0.511 Sum_probs=97.3
Q ss_pred hhhhhhccccCccccccccchhhhHHHHHHHHHHHHHHHHHhhhccccccceeccCCCCcHHHHHHHHHHHHHHHHHhcc
Q psy15185 491 YVIALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDILAQSVNAIFAVAIFISYGL 570 (611)
Q Consensus 491 ~~~pi~~~mk~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~~~~~i~~nlp~~~~~~~~~~~~~~~~~~~~ypl 570 (611)
.+.|++++||+|++|+|...++..++.+++++|..+|++||++|||++++++++|+|++++...++++++.++++++||+
T Consensus 210 ~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl 289 (409)
T PF01490_consen 210 NLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPL 289 (409)
T ss_pred ccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhcccc
Confidence 46799999999999994444999999999999999999999999999999999999988789999999999999999999
Q ss_pred ccchhHHHHHhhhhhh----hcccCCCCchhHHhhhheeEEee
Q psy15185 571 QCYVPVEIIWSRYLKQ----HLENATPGKKLLVEYIMRVSVVG 609 (611)
Q Consensus 571 ~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~r~~lv~ 609 (611)
+.+|+.+.+++...++ ..+...+...+++++.+|+.+++
T Consensus 290 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (409)
T PF01490_consen 290 QLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVL 332 (409)
T ss_pred ccchhHhhhhhheeccccccccccccccccceeeeeeecchhh
Confidence 9998888888753321 00111112234567788877654
No 22
>PRK10655 potE putrescine transporter; Provisional
Probab=99.07 E-value=5.6e-08 Score=105.89 Aligned_cols=237 Identities=10% Similarity=0.028 Sum_probs=133.6
Q ss_pred CCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
+++.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|...+.++. -..-+-.++.
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~-----GG~y~y~~~~ 78 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKS-----GGMGGYAEYA 78 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-----CchHHHHHHH
Confidence 4688999999999999999999999998888886 456666666666666666666654432221 1222233444
Q ss_pred HhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhh
Q psy15185 208 LQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAP 287 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~ 287 (611)
+ ||...++......+.......++.....+.+...++...+.+....+. +..+.+.-....+..+..+.
T Consensus 79 ~----------G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~-~~~l~~~~~ln~~g~~~~~~ 147 (438)
T PRK10655 79 F----------GKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLAT-IGVLWLCTVANFGGARITGQ 147 (438)
T ss_pred c----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH-HHHHHHHHHHHHhCHHHHHH
Confidence 4 666666666655544444444443333444444433111011111111 11112222223344455555
Q ss_pred HHHHHHHHHHHHHHhhhhee--cccCCCCCC-CC--CcCCcchhhHHHHHHHHhcccccchhcchhhccCCcc-cCccch
Q psy15185 288 FSQLANVITFIGLGITMYYI--CQALPPVSS-RP--YFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS-FGGYYG 361 (611)
Q Consensus 288 ~s~~~~~~i~~~~~~v~~~~--~~~~~~~~~-~~--~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~-~~~~~~ 361 (611)
+..+.+...+..++++.... ..+..+..+ .. ....+.++...+....|+|.|-..+...-+|+|||+| .+|
T Consensus 148 i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr--- 224 (438)
T PRK10655 148 ISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI--- 224 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH---
Confidence 44444333322222211111 011111111 00 0111245556677889999999999999999999965 555
Q ss_pred hhhhHHHHHHHHHHHHHhHhhhh
Q psy15185 362 VLNQGMFAIVIMYVIMGFLGYVK 384 (611)
Q Consensus 362 v~~~a~~i~~~~Y~~~g~~GY~~ 384 (611)
++..+..++.++|++........
T Consensus 225 Ai~~~~~~~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 225 AVLGGTLGAAVIYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999877654433
No 23
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.03 E-value=5.3e-08 Score=114.01 Aligned_cols=237 Identities=11% Similarity=0.031 Sum_probs=153.0
Q ss_pred cCCCCCHHHHHHHH-Hhhhhccccch-hHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCChhHH
Q psy15185 127 LEHATTNNETLIHL-LKGSLGTGILA-MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYE-LCKKKRVPILNYPDS 203 (611)
Q Consensus 127 ~~~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~-~~~~~~~~~~sy~~l 203 (611)
..++.++++.++.- +.+++|+|++- +++...++|...+++..++.++++..|..-+.+.... ..+ .--.|.-+
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~----aGG~Y~yi 149 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK----GGGAYYLI 149 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----ccHHHHHH
Confidence 34677888888877 99999999975 5588889998878888899999999888877775542 111 11134333
Q ss_pred HHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc------cchHHHHHHHHHHHHHHhh
Q psy15185 204 MRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA------VMDVRIVMVLLLLPLIGIN 277 (611)
Q Consensus 204 ~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~------~~~~~~~~~i~~~~~~~l~ 277 (611)
++++ |+.....+.....+.+..++..|.+..++.+..++..... ..+.+.+..+.++.+..+
T Consensus 150 -sral----------Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~I- 217 (953)
T TIGR00930 150 -SRSL----------GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGI- 217 (953)
T ss_pred -HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHH-
Confidence 3344 7777777777777777777888998888888887753211 112333333333333333
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhhhheecccCCCC--------C------C-CCCcCC-cchhhHHHHHHHHhccccc
Q psy15185 278 SIRNLKLLAPFSQLANVITFIGLGITMYYICQALPPV--------S------S-RPYFGD-PRNWNLFIGTTLFALEAVG 341 (611)
Q Consensus 278 ~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~~~~~~--------~------~-~~~~~~-~~~~~~~~g~~~faf~~~~ 341 (611)
.....+..+.+..+.++..+.+++.++........+. + + .+.+.+ ..++...++++.+||.|..
T Consensus 218 n~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ 297 (953)
T TIGR00930 218 SFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGIL 297 (953)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 3345666666666655554444333333222110000 0 0 011111 1236777888888999999
Q ss_pred chhcchhhccCCcc-cCccchhhhhHHHHHHHHHHHHHhHhh
Q psy15185 342 VVIALENNMKTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGY 382 (611)
Q Consensus 342 ~i~~i~~~mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY 382 (611)
....+-.|+|||+| .++ .+..+..+++++|+++.+.-.
T Consensus 298 agan~sgElKnP~r~IPr---atl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 298 AGANISGDLKDPQKAIPK---GTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred HHHHHHHhccChhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999965 444 899999999999999986433
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=98.99 E-value=1.7e-07 Score=101.87 Aligned_cols=237 Identities=11% Similarity=0.033 Sum_probs=145.5
Q ss_pred CCCCCHHHHHHHHHhhhhccccchhHHHHh-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGILAMPNAFV-NSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
+++.+.++.+...+++++|+|++.+|.... ..|. ...+..++.+++.......+.|...+.++. -..-+-.++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~-----Gg~y~~~~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA-----GSPYTYAYE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CcceeeHHH
Confidence 357899999999999999999999995544 4454 344555566666666666677766543321 122233344
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHH-----------HHHHHHHHHHH
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRI-----------VMVLLLLPLIG 275 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~-----------~~~i~~~~~~~ 275 (611)
.+ ||+..++......+.....+.++....++.+..+++......+... +..+.++.+.-
T Consensus 76 ~~----------G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (429)
T TIGR00909 76 AM----------GELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLT 145 (429)
T ss_pred Hh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHH
Confidence 45 7888888887777777667777777778877777653211111111 11122222222
Q ss_pred hhcccccchhhhHHHHHHHHHHHHHHhhhheecc--cCCCCCCCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCC
Q psy15185 276 INSIRNLKLLAPFSQLANVITFIGLGITMYYICQ--ALPPVSSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTP 353 (611)
Q Consensus 276 l~~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p 353 (611)
.-..+..|....++.+.....+..++........ +.++..+. .+.++.++...+....|+|.+...+....+|+|||
T Consensus 146 ~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p 224 (429)
T TIGR00909 146 YILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPF-MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNP 224 (429)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCC-CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc
Confidence 3334455666555655554444333222211111 11111111 12234566777888999999999999999999999
Q ss_pred cc-cCccchhhhhHHHHHHHHHHHHHhHhhhh
Q psy15185 354 AS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVK 384 (611)
Q Consensus 354 ~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~ 384 (611)
+| .+| ++..+..++.++|++........
T Consensus 225 ~r~ip~---ai~~~~~~~~v~Yil~~~~~~~~ 253 (429)
T TIGR00909 225 ERDIPK---AIILSLIVVTLLYVLVAAVILGA 253 (429)
T ss_pred cccccH---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 455 89999999999999987665443
No 25
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.99 E-value=1.6e-06 Score=96.96 Aligned_cols=239 Identities=13% Similarity=0.064 Sum_probs=140.0
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHHHH--hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPNAF--VNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSM 204 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 204 (611)
.+++.+.++.+..-+..++|+|++.+|-.. +.+|-. .++..++.++.+........|...+.++. + -.|.-.
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~s-G---g~Y~y~- 99 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKA-G---SAYLYS- 99 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC-C---cceeeH-
Confidence 456899999999999999999999999643 457753 44455666666666666666665554321 1 123322
Q ss_pred HHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc------------cc-hHHHHHHHHHH
Q psy15185 205 RVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA------------VM-DVRIVMVLLLL 271 (611)
Q Consensus 205 ~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~------------~~-~~~~~~~i~~~ 271 (611)
++.+ |+...+++....++.......+.....++.+..++....+ .. ....+..+..+
T Consensus 100 ~~~~----------G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii 169 (557)
T TIGR00906 100 YVTV----------GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLI 169 (557)
T ss_pred HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHH
Confidence 2333 7777777777766655544555445555555555432100 00 00111112222
Q ss_pred HHHHhhcccccchhhhHHHHHHHHHHHHHHhhhheec--ccCCCCC-----CCCC--cCCcchhhHHHHHHHHhcccccc
Q psy15185 272 PLIGINSIRNLKLLAPFSQLANVITFIGLGITMYYIC--QALPPVS-----SRPY--FGDPRNWNLFIGTTLFALEAVGV 342 (611)
Q Consensus 272 ~~~~l~~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~--~~~~~~~-----~~~~--~~~~~~~~~~~g~~~faf~~~~~ 342 (611)
.+.-.-..+..|..++++.+..+.-+..+++++.... .+..++. +... +..+.++........|+|.|-..
T Consensus 170 ~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~ 249 (557)
T TIGR00906 170 LLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDA 249 (557)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHH
Confidence 2222334456666666655544443333222222211 1111111 0001 12245677777889999999999
Q ss_pred hhcchhhccCCcc-cCccchhhhhHHHHHHHHHHHHHhHhhhh
Q psy15185 343 VIALENNMKTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVK 384 (611)
Q Consensus 343 i~~i~~~mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~ 384 (611)
+....+|+|||+| .++ ++..++.+++++|+++.+.-...
T Consensus 250 v~~~aeE~knP~r~iP~---aii~sl~i~~vlY~lv~~~l~~~ 289 (557)
T TIGR00906 250 IATTGEEVKNPQRAIPI---GIVTSLLVCFVAYFLMSAALTLM 289 (557)
T ss_pred HHHhHHhccCccccccH---HHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999976 554 89999999999999988765433
No 26
>KOG3832|consensus
Probab=98.97 E-value=9e-09 Score=95.07 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=139.9
Q ss_pred CHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cC--CCCC---
Q psy15185 132 TNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKK--------KR--VPIL--- 198 (611)
Q Consensus 132 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~--------~~--~~~~--- 198 (611)
|-.-...-+.|-++|+|.|+||.||+.+||+.++.++.+.+++++.+...++++....+.. .+ ++..
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 3344556678889999999999999999999999999999999999999999876443311 01 1001
Q ss_pred ----------ChhHH-------------------HHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhH
Q psy15185 199 ----------NYPDS-------------------MRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNI 249 (611)
Q Consensus 199 ----------sy~~l-------------------~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l 249 (611)
.|+.. ..+. +.|.+....+.|.+-.+..++++++++|-...|....--..
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkv-emgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKV-EMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhh-hHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 12211 1110 12345567789999999999999999999999987666555
Q ss_pred HHHHHhhcc-----------------cchH--------HHHHHHHHHHHH-HhhcccccchhhhHHHHHHHHHHHHHHhh
Q psy15185 250 KPVTDAYIA-----------------VMDV--------RIVMVLLLLPLI-GINSIRNLKLLAPFSQLANVITFIGLGIT 303 (611)
Q Consensus 250 ~~l~~~~~~-----------------~~~~--------~~~~~i~~~~~~-~l~~~~~l~~l~~~s~~~~~~i~~~~~~v 303 (611)
-++.....+ .|+. |.+..++.+.+. |+.+ -+.++...+.++....-....+..
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhccch
Confidence 555443321 1322 344555555443 4443 244444444555555444443332
Q ss_pred hheecccCCCC--CCCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCC
Q psy15185 304 MYYICQALPPV--SSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTP 353 (611)
Q Consensus 304 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p 353 (611)
+.....+..+. +..+....+-++...++...|+|.+|.+.|+....++.+
T Consensus 251 ~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 251 ISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 22221111111 122233446778888999999999999999988887754
No 27
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.97 E-value=5.8e-08 Score=102.88 Aligned_cols=236 Identities=13% Similarity=0.228 Sum_probs=152.7
Q ss_pred CCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHh
Q psy15185 130 ATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQ 209 (611)
Q Consensus 130 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~ 209 (611)
+.|.+|.++.++.+++|+|++.+|....+.+---+.+..++.+.........+.+..++.+ ..+..|..++.+
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p------~~~~~~~~~~~~- 74 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP------EKNFSEILSKYL- 74 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHh-
Confidence 5688999999999999999999999876654445666677778888888888887766532 237888888887
Q ss_pred cCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHH
Q psy15185 210 QGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFS 289 (611)
Q Consensus 210 ~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s 289 (611)
||+...++......+.+..........++.+.... .++.+.....++..+ .......+.++..+.++
T Consensus 75 ---------Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~tp~~~~~l~~l~-~~~~~~~~Gi~~i~r~~ 141 (359)
T TIGR00912 75 ---------GKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL---LPRTPIIVIIILIII-VSIYIVRKGIEVLLRTA 141 (359)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHH-HHHHHHHccHHHHHHHH
Confidence 88888888887777766665555555555554432 112232222222222 22233345666666666
Q ss_pred HHHHHHHHHHH-HhhhheecccCCCCCCC-CC-cCCcchhhHHH-HHHHHhcccccchhcchhhccCCcccCccchhhhh
Q psy15185 290 QLANVITFIGL-GITMYYICQALPPVSSR-PY-FGDPRNWNLFI-GTTLFALEAVGVVIALENNMKTPASFGGYYGVLNQ 365 (611)
Q Consensus 290 ~~~~~~i~~~~-~~v~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-g~~~faf~~~~~i~~i~~~mk~p~~~~~~~~v~~~ 365 (611)
.+-....+... .++......+ .+.+.. |. ..++.+..... ....++|.+...+.-...++|||++.+| +...
T Consensus 142 ~i~~~~~i~~~~~il~~~~~~~-~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k---~~~~ 217 (359)
T TIGR00912 142 EILLIIFLILFILVLILLAPKL-GNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKK---SIIK 217 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-ccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHH---HHHH
Confidence 65555444441 2222222111 111111 11 12233333333 3567888888888888889999988777 8899
Q ss_pred HHHHHHHHHHHHHhHhhhhcCccc
Q psy15185 366 GMFAIVIMYVIMGFLGYVKYGSAA 389 (611)
Q Consensus 366 a~~i~~~~Y~~~g~~GY~~fG~~~ 389 (611)
+..++.++|...-+.....+|.+.
T Consensus 218 ~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 218 AIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred HHHHHHHHHHHHHHHHHheecHHH
Confidence 999999999999998888888653
No 28
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.96 E-value=3.6e-07 Score=99.76 Aligned_cols=241 Identities=11% Similarity=0.043 Sum_probs=130.6
Q ss_pred cccCCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHH
Q psy15185 125 RVLEHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSM 204 (611)
Q Consensus 125 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 204 (611)
.+.+++.+.++.+...+++++|+|++.+|...++.|- ..+...++.++........+.|.....++. --.|.- .
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~a----GG~y~~-~ 77 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSP----GGSYAY-A 77 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CChhHH-H
Confidence 3455789999999999999999999999998888764 233444444555555555555554443221 112333 4
Q ss_pred HHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccch
Q psy15185 205 RVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKL 284 (611)
Q Consensus 205 ~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~ 284 (611)
++.+ ||...+++.....+.......+......+......+...+.+ ......+.++.++-.-..+..|.
T Consensus 78 ~~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ln~~gvk~ 146 (445)
T PRK10644 78 RRCF----------GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPL-VLTITCVVVLWIFVLLNIVGPKM 146 (445)
T ss_pred HHHc----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH-HHHHHHHHHHHHHHHHHHhchHH
Confidence 4444 777776666555544333333333333333333332111011 11111111111222223344455
Q ss_pred hhhHHHHHHHHHHHHHHhhhheec--ccCCCC-CCCC--CcCCcchhhHHHHHHHHhcccccchhcchhhccCCcc-cCc
Q psy15185 285 LAPFSQLANVITFIGLGITMYYIC--QALPPV-SSRP--YFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS-FGG 358 (611)
Q Consensus 285 l~~~s~~~~~~i~~~~~~v~~~~~--~~~~~~-~~~~--~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~-~~~ 358 (611)
...+..+..+..+..++....... .+.++. +..+ ....+.++...+....|+|.|-......-+|+|||+| .+|
T Consensus 147 ~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPr 226 (445)
T PRK10644 147 ITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhH
Confidence 555544444332222221111111 111110 1100 1112344555667889999999999999999999965 555
Q ss_pred cchhhhhHHHHHHHHHHHHHhHhhhhc
Q psy15185 359 YYGVLNQGMFAIVIMYVIMGFLGYVKY 385 (611)
Q Consensus 359 ~~~v~~~a~~i~~~~Y~~~g~~GY~~f 385 (611)
++..+..++.++|.++.+.-....
T Consensus 227 ---ai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 227 ---ATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999888744433
No 29
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.90 E-value=9.7e-07 Score=97.11 Aligned_cols=242 Identities=11% Similarity=0.062 Sum_probs=137.9
Q ss_pred CCCCCHHHHHHHHHhhhhccccchhHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGILAMPNAFVNSG-LVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G-~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
+++.+.++++...+++++|+|++.+|....+.| -...++..++.++........+.|...+.+++ .-..-+-.++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~----sGG~y~y~~~ 81 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL----DGGIYAYARE 81 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CCChhhhHHh
Confidence 357899999999999999999999998877654 22234445666666666666666655443321 1122223355
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHH-HHHHHHHHHHhhcccccchh
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIV-MVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~-~~i~~~~~~~l~~~~~l~~l 285 (611)
.+ ||+..++......+.......++.....+.+..+++..........+ ..+.++.+......+..|..
T Consensus 82 ~~----------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 82 GF----------GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred Hc----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 55 77777777776655544445556555556666555422111111111 11222222223344455655
Q ss_pred hhHHHHHHHHHHHHH---HhhhheecccC--C-CCCC--CCC-cCCcchhhHHHHHHHHhcccccchhcchhhccCCccc
Q psy15185 286 APFSQLANVITFIGL---GITMYYICQAL--P-PVSS--RPY-FGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPASF 356 (611)
Q Consensus 286 ~~~s~~~~~~i~~~~---~~v~~~~~~~~--~-~~~~--~~~-~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~~ 356 (611)
+.+..+.....+..+ ++......... . +..+ .+. ...+..+...+....|+|.|-.......+|+||+|+.
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~i 231 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccc
Confidence 555555444332221 11111111110 0 0000 011 1123455666777999999999999999999994445
Q ss_pred CccchhhhhHHHHHHHHHHHHHhHhhhhcC
Q psy15185 357 GGYYGVLNQGMFAIVIMYVIMGFLGYVKYG 386 (611)
Q Consensus 357 ~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG 386 (611)
+| ++..+..++.++|++.........+
T Consensus 232 Pr---ai~~~~~i~~~~Yil~~~~~~~~~~ 258 (473)
T TIGR00905 232 GK---ATVLGTLGALVIYILITLLSLGVLP 258 (473)
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 54 9999999999999988776544433
No 30
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.86 E-value=1.3e-06 Score=95.05 Aligned_cols=238 Identities=11% Similarity=-0.022 Sum_probs=131.5
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
++++.+.++.+...++++||+|++.+|...++.|-. .+...++.++........+.|...+.++ +--.|.-. ++
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~----~GG~y~y~-~~ 76 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQ----QGGPIAYA-GE 76 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC----CCChhHHH-HH
Confidence 456889999999999999999999999999988753 4444455555544444444444433221 11123322 33
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
+ |+...+.+.........-...++.+...+.+...++...+......+..++.. +.-....+..|..+
T Consensus 77 -~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~-~~~~ln~~gvk~~~ 144 (435)
T PRK10435 77 -I----------SPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVW-VFTFVNMLGGTWVS 144 (435)
T ss_pred -H----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 4 55555555544333222223334344444444443321111111111111111 22223344555555
Q ss_pred hHHHHHHHHHHHHHHhhhheec--ccC----CCCCCCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCCc-ccCcc
Q psy15185 287 PFSQLANVITFIGLGITMYYIC--QAL----PPVSSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPA-SFGGY 359 (611)
Q Consensus 287 ~~s~~~~~~i~~~~~~v~~~~~--~~~----~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~-~~~~~ 359 (611)
.+..+..+..+..++....... .+. +++++ +...++.++...+....|+|.|-..+....+|+|||+ +.+|
T Consensus 145 ~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPr- 222 (435)
T PRK10435 145 RLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPL- 222 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccH-
Confidence 5554444333322221111111 010 11111 1112345677778889999999999999999999995 4665
Q ss_pred chhhhhHHHHHHHHHHHHHhHhhhhcC
Q psy15185 360 YGVLNQGMFAIVIMYVIMGFLGYVKYG 386 (611)
Q Consensus 360 ~~v~~~a~~i~~~~Y~~~g~~GY~~fG 386 (611)
++..+..++.++|++..+.......
T Consensus 223 --Ai~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 223 --ATMLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999998887654443
No 31
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.84 E-value=1.3e-06 Score=95.32 Aligned_cols=231 Identities=10% Similarity=0.012 Sum_probs=136.0
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
.+++.+.++.+...+..++|....+.+.+.++.|+..-++..++.+++.......+.|...+.++. -..-.-.++
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~-----Gg~y~~~~~ 79 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA-----GGGYGFARR 79 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCHHHHHHH
Confidence 446789999988888899985556668888999986444555555555555566666665544321 123333444
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
.+ |+...+++.....+.......++....++.+...++. ........+.... ...-..+..|..+
T Consensus 80 ~~----------G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~----~~~~~~~~~~~~~-~~~ln~~g~~~~~ 144 (442)
T TIGR00908 80 AF----------GPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV----GPGWLAALVFYIV-FIGINILGVGEAA 144 (442)
T ss_pred Hh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CchhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44 7888888877777766666677777777777666542 2222222222222 2223334455555
Q ss_pred hHHHHHHHHHHHHHHhhhheecccC--CC-----CCCCCCc--CCcchhhHHHHHHHHhcccccchhcchhhccCCcc-c
Q psy15185 287 PFSQLANVITFIGLGITMYYICQAL--PP-----VSSRPYF--GDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS-F 356 (611)
Q Consensus 287 ~~s~~~~~~i~~~~~~v~~~~~~~~--~~-----~~~~~~~--~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~-~ 356 (611)
.+..+..+..+..+++.......+. .+ ..+...+ ..+.++...+....|+|.|...+...-+|+|||+| .
T Consensus 145 ~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~i 224 (442)
T TIGR00908 145 KLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDI 224 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 5544433332222222111111110 00 0000111 12235566667788999999999999999999965 4
Q ss_pred CccchhhhhHHHHHHHHHHHHHhH
Q psy15185 357 GGYYGVLNQGMFAIVIMYVIMGFL 380 (611)
Q Consensus 357 ~~~~~v~~~a~~i~~~~Y~~~g~~ 380 (611)
+| ++..+..++.++|...-..
T Consensus 225 pr---ai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 225 PR---GLIGAILTLLALAAGILVV 245 (442)
T ss_pred CH---HHHHHHHHHHHHHHHHHHH
Confidence 55 8888888888888776543
No 32
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.82 E-value=1.1e-06 Score=96.46 Aligned_cols=241 Identities=8% Similarity=0.068 Sum_probs=132.4
Q ss_pred CCCCHHHHHHHHHhhhhccccchhHHHHh-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTGILAMPNAFV-NSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
++.+.++.+...++++||+|++.+|.... .+|....++..++.++........+.|...+.++. .-..-+-.++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~----gGG~y~y~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPEL----DGGVYSYAKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CCChhhhHHhH
Confidence 36788999999999999999999997654 45533334445666666666555555554432211 00222335555
Q ss_pred HhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHH-HHHHHHHHHhhcccccchhh
Q psy15185 208 LQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVM-VLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~-~i~~~~~~~l~~~~~l~~l~ 286 (611)
+ ||+..+++.....+.......++.....+.+....+......+...+. .+..+........+..|..+
T Consensus 77 f----------G~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~ 146 (468)
T TIGR03810 77 F----------GPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAA 146 (468)
T ss_pred c----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 5 777777777665554443344555444444444333221111111111 11111112222235555555
Q ss_pred hHHHHHHHHHHHH---HHhhhheeccc--CC-C-CCCCC----CcCCcchhhHHHHHHHHhcccccchhcchhhccCCcc
Q psy15185 287 PFSQLANVITFIG---LGITMYYICQA--LP-P-VSSRP----YFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS 355 (611)
Q Consensus 287 ~~s~~~~~~i~~~---~~~v~~~~~~~--~~-~-~~~~~----~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~ 355 (611)
.++.+..+.-+.. +++........ .. + +++.+ ....+.++...+....|+|.|-.......+|.||+|+
T Consensus 147 ~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ 226 (468)
T TIGR03810 147 FINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSD 226 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCccc
Confidence 5554443332222 11111111111 00 0 01000 0111234556677889999999998888899998777
Q ss_pred cCccchhhhhHHHHHHHHHHHHHhHhhhhcC
Q psy15185 356 FGGYYGVLNQGMFAIVIMYVIMGFLGYVKYG 386 (611)
Q Consensus 356 ~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG 386 (611)
.+| ++..+...+.++|.++.+..+...+
T Consensus 227 ip~---ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 227 VGK---ATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred chH---HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 766 8999999999999998887665554
No 33
>PRK10249 phenylalanine transporter; Provisional
Probab=98.81 E-value=1.1e-06 Score=96.14 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=134.5
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhH-HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMP-NAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
.+++.+.++.....+..++|+|++..| .+.+++|- ..++..++.+++......-+.|...+.+.. -+..+..+
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~-----Gg~~~y~~ 92 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVS-----GSFAHFAY 92 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCHHHHHH
Confidence 446788899999999999999999988 46666675 366666777777777777777766553321 24455556
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
+.+ |+...+++.....+.......+.....+..+....+ ......+..++.+ +......+..|..
T Consensus 93 ~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~-l~~~lN~~gv~~~ 157 (458)
T PRK10249 93 KYW----------GPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP----DVPTWIWAAAFFI-IINAVNLVNVRLY 157 (458)
T ss_pred HHh----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----cCcHHHHHHHHHH-HHHHHHHhcchhh
Confidence 665 777777777766555444444444444444433322 2222222222222 2222333444444
Q ss_pred hhHHHHHH---HHHHHHHHhhhh---eecccCCCC--CC---CC--CcCCcchhhHHHHHHHHhcccccchhcchhhccC
Q psy15185 286 APFSQLAN---VITFIGLGITMY---YICQALPPV--SS---RP--YFGDPRNWNLFIGTTLFALEAVGVVIALENNMKT 352 (611)
Q Consensus 286 ~~~s~~~~---~~i~~~~~~v~~---~~~~~~~~~--~~---~~--~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~ 352 (611)
+.+..... +..+..+++... ....+.+.. +. .. .+..+.++...+....|+|.|-..+....+|+||
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~ 237 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARD 237 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 44332221 111111111111 111110100 00 00 1133566778888899999999999999999999
Q ss_pred Ccc-cCccchhhhhHHHHHHHHHHHHHhHhh
Q psy15185 353 PAS-FGGYYGVLNQGMFAIVIMYVIMGFLGY 382 (611)
Q Consensus 353 p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY 382 (611)
|+| .+| ++..+.....++|........
T Consensus 238 P~k~iPr---ai~~~~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 238 PEKSIPK---AVNQVVYRILLFYIGSLVVLL 265 (458)
T ss_pred HhhHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 976 444 888888888999987555443
No 34
>KOG1287|consensus
Probab=98.81 E-value=2.7e-07 Score=98.05 Aligned_cols=301 Identities=12% Similarity=0.126 Sum_probs=175.7
Q ss_pred ccCCCCCHHHHHHHHHhhhhccccchhHHHHhhcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q psy15185 126 VLEHATTNNETLIHLLKGSLGTGILAMPNAFVNSG--LVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDS 203 (611)
Q Consensus 126 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l 203 (611)
+.+++.+.+..+..++.++||+|++.-|....+.+ ...++++-++.++++........|.....++ .--+|.-+
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk----sGgd~ayi 84 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK----SGGDYAYI 84 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC----CCcchhhH
Confidence 44578899999999999999999999998776654 5556666688888888888777775544332 22356665
Q ss_pred HHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhh-hhHHHHHHHHhh-HHHHHHhhcc--cchHHHHHHHHHHHHHHhhcc
Q psy15185 204 MRVALQQGPPCLRFAANASAIIVDMFLIVYQLG-ICCVYIMFVATN-IKPVTDAYIA--VMDVRIVMVLLLLPLIGINSI 279 (611)
Q Consensus 204 ~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g-~~i~Y~i~~~~~-l~~l~~~~~~--~~~~~~~~~i~~~~~~~l~~~ 279 (611)
.+. | |+.......-.-.+.... .+..+-+..++. +++.++ .++ ....+....+ ++.++-....
T Consensus 85 ~~a-f----------g~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c~~p~~~~~lla~~-~l~~lt~~n~ 151 (479)
T KOG1287|consen 85 SEA-F----------GPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LCDVPRVASKLLAAA-LLVLLTLINS 151 (479)
T ss_pred HHH-h----------ccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CCCCchHHHHHHHHH-HHHHHHHHhh
Confidence 543 3 444333333222222232 335666666665 555554 222 2223322222 2222222223
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhhh---e-ecccCCCC---CCCC-CcCCcchhhHHHHHHHHhcccccchhcchhhcc
Q psy15185 280 RNLKLLAPFSQLANVITFIGLGITMY---Y-ICQALPPV---SSRP-YFGDPRNWNLFIGTTLFALEAVGVVIALENNMK 351 (611)
Q Consensus 280 ~~l~~l~~~s~~~~~~i~~~~~~v~~---~-~~~~~~~~---~~~~-~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk 351 (611)
.+.|.-+++..+..+.=+.++.+++. + ...+..++ ++.+ ...+..++..++-...|||.+=...=-+.+|+|
T Consensus 152 ~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEik 231 (479)
T KOG1287|consen 152 FSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIK 231 (479)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhc
Confidence 34444444444444443333333332 1 11111111 1111 112345677888889999999999999999999
Q ss_pred CCcccCccchhhhhHHHHHHHHHHHHHhHhhhhcCcc--cccccc------cccCCcCHHHH------------------
Q psy15185 352 TPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSA--AQGSVT------LNLPKEDIIGI------------------ 405 (611)
Q Consensus 352 ~p~~~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~--~~~~il------~n~p~~~~~~~------------------ 405 (611)
||+|.- |+++..++.+++++|+++=+..+.+--.+ .+++.. ..++.-.+.+.
T Consensus 232 nP~ktL--P~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~ 309 (479)
T KOG1287|consen 232 NPRRTL--PRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSS 309 (479)
T ss_pred Cccccc--hHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHH
Confidence 996532 33999999999999999987665443211 011100 00010001000
Q ss_pred --------------------------------------HHHHhccchhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCC
Q psy15185 406 --------------------------------------VLAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLWPD 445 (611)
Q Consensus 406 --------------------------------------iiA~~ip~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~ 445 (611)
++..+++|++.+++.++=.-.....+.+=+++++|.++++
T Consensus 310 SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 310 SRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4445677899999998877777778888888888876654
No 35
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.79 E-value=2e-06 Score=95.42 Aligned_cols=246 Identities=15% Similarity=0.125 Sum_probs=133.4
Q ss_pred CCCccccCCCCCHHHHHHHHHhhhhccccchhHHH-Hhhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy15185 121 PHKHRVLEHATTNNETLIHLLKGSLGTGILAMPNA-FVNSGLVI-GTVGTILIGILCTYCLHVLVRSQYELCKKKRVPIL 198 (611)
Q Consensus 121 ~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~-giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~ 198 (611)
+.++.+.+++.+.++.+...+++++|+|++..|.. .+++|-.. ..+..++.+++.......+.|.....++.. -
T Consensus 34 ~~~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG----G 109 (501)
T TIGR00911 34 GGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG----G 109 (501)
T ss_pred cccccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----c
Confidence 33444556789999999999999999999999864 55567321 223445566666666666677655543211 1
Q ss_pred ChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHH-HhhhhhHHHHHHHHhhHHH-HHHhhcc-cchHHHHHHHHHHHHHH
Q psy15185 199 NYPDSMRVALQQGPPCLRFAANASAIIVDMFLIV-YQLGICCVYIMFVATNIKP-VTDAYIA-VMDVRIVMVLLLLPLIG 275 (611)
Q Consensus 199 sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~-~~~g~~i~Y~i~~~~~l~~-l~~~~~~-~~~~~~~~~i~~~~~~~ 275 (611)
.|.-. ++.+ ||...++....... ...+.+..+....++.+.+ +.+.... .+....... ..+.+.-
T Consensus 110 ~y~~~-~~~~----------g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~-~~i~~~~ 177 (501)
T TIGR00911 110 EYNYI-LEVF----------GPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAV-LCVLLLT 177 (501)
T ss_pred hhhhH-HhHh----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HHHHHHH
Confidence 23332 3344 66555555443222 1223334444444444322 2211100 111111111 1222222
Q ss_pred hhcccccchhhhHHHHHHHHHHHHHHh---hhheec-ccCC-CCCCCCCc----CCcchhhHHHHHHHHhcccccchhcc
Q psy15185 276 INSIRNLKLLAPFSQLANVITFIGLGI---TMYYIC-QALP-PVSSRPYF----GDPRNWNLFIGTTLFALEAVGVVIAL 346 (611)
Q Consensus 276 l~~~~~l~~l~~~s~~~~~~i~~~~~~---v~~~~~-~~~~-~~~~~~~~----~~~~~~~~~~g~~~faf~~~~~i~~i 346 (611)
....+..|...++..+..+..+..++. ...... .+.+ +.+....+ .++.++...+....|+|.|-..+...
T Consensus 178 ~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~ 257 (501)
T TIGR00911 178 LVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFV 257 (501)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 333445566655555444443332221 111111 1111 11111111 22456667778899999999999999
Q ss_pred hhhccCCcc-cCccchhhhhHHHHHHHHHHHHHhHhhhhc
Q psy15185 347 ENNMKTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVKY 385 (611)
Q Consensus 347 ~~~mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~f 385 (611)
.+|+|||+| .+| ++..+..++.++|.+..+.-....
T Consensus 258 a~E~knP~r~iPr---Ai~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 258 TEEVKNPYRTLPI---AIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHhcCchhhhHH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999965 455 899999999999999865544333
No 36
>PRK15049 L-asparagine permease; Provisional
Probab=98.78 E-value=7.3e-06 Score=90.65 Aligned_cols=238 Identities=14% Similarity=0.129 Sum_probs=127.9
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHH-HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPN-AFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
.+++.+.++.....+..+||+|++..|. +.+++|- .+++..++.+++....+.-+.|.....+. .-....-.+
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~-----aGg~y~y~~ 99 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS-----SGSFVSYAR 99 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHH
Confidence 4567899999999999999999998885 7777885 45666667777777777777776554332 124444455
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
+.+ |++..+++.-...+.......+-....+..+.. .+.+ +..+...+..+..+ +.........|..
T Consensus 100 ~~~----------G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~~~~~~~~-l~~~iN~~gvk~~ 166 (499)
T PRK15049 100 EFL----------GEKAAYVAGWMYFINWAMTGIVDITAVALYMHY-WGAF-GGVPQWVFALAALT-IVGTMNMIGVKWF 166 (499)
T ss_pred HHh----------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccC-CCCcHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 555 666666666555443322222222222222211 1111 11222222222222 2222333444544
Q ss_pred hhHHHHHHH---HHHHHHHhhhhee-cccCCCCC---CCC------C--cCCcchhhHHHHHHHHhcccccchhcchhhc
Q psy15185 286 APFSQLANV---ITFIGLGITMYYI-CQALPPVS---SRP------Y--FGDPRNWNLFIGTTLFALEAVGVVIALENNM 350 (611)
Q Consensus 286 ~~~s~~~~~---~i~~~~~~v~~~~-~~~~~~~~---~~~------~--~~~~~~~~~~~g~~~faf~~~~~i~~i~~~m 350 (611)
..+.....+ ..+..++++.... ....+... ... . +..+.++...+....|+|.|-..+....+|+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 444433321 1122221111111 11111100 000 0 1112223344456899999999999999999
Q ss_pred cCCcc-cCccchhhhhHHHHHHHHHHHHHhHhhhhcC
Q psy15185 351 KTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVKYG 386 (611)
Q Consensus 351 k~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG 386 (611)
|||+| .+| ++..++....++|+..........+
T Consensus 247 knP~r~iPr---Ai~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 247 KDPQTMVPK---AINSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred cChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecc
Confidence 99976 444 8888888888888887765554443
No 37
>PRK11021 putative transporter; Provisional
Probab=98.77 E-value=6.2e-06 Score=89.01 Aligned_cols=227 Identities=13% Similarity=0.068 Sum_probs=128.4
Q ss_pred CHHHHHHHHHhhhhccccchhHH-HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhc
Q psy15185 132 TNNETLIHLLKGSLGTGILAMPN-AFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQ 210 (611)
Q Consensus 132 s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~ 210 (611)
+.++++...++++||+|++.+|- +.+++|- ..++..++.++........+.|...+.++. -..-.-.++.+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a-----GG~y~y~~~~~-- 73 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA-----GGPAHFVGMAF-- 73 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCHHHhHHHHh--
Confidence 57889999999999999999995 5555563 456666777777777777777766654332 13333444555
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHHH
Q psy15185 211 GPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQ 290 (611)
Q Consensus 211 G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~ 290 (611)
||...+...............+......+.+...++. +.+... ...+..+.+.-.-..+..|..+.+..
T Consensus 74 --------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ln~~Gv~~~~~~~~ 142 (410)
T PRK11021 74 --------GPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW--SSWQLL-LAELLTLALLWLLNLRGASSSANLQT 142 (410)
T ss_pred --------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC--CCchHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5655555555444322222222223333343333321 011111 12122222222334455555555554
Q ss_pred HHHHHHHHHHHhhhheecccCCCCC-CCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCCcc-cCccchhhhhHHH
Q psy15185 291 LANVITFIGLGITMYYICQALPPVS-SRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS-FGGYYGVLNQGMF 368 (611)
Q Consensus 291 ~~~~~i~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~-~~~~~~v~~~a~~ 368 (611)
+..+..+..+.........+..+.+ +.....++.++...+....|+|.|...+...-+|+|||+| .+| ++..+..
T Consensus 143 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr---Ai~~~~~ 219 (410)
T PRK11021 143 VIALLIVALVVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR---ALMIGLL 219 (410)
T ss_pred HHHHHHHHHHHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH---HHHHHHH
Confidence 4333222221111111100100110 0011234567778888999999999999999999999965 555 9999999
Q ss_pred HHHHHHHHHHhH
Q psy15185 369 AIVIMYVIMGFL 380 (611)
Q Consensus 369 i~~~~Y~~~g~~ 380 (611)
++.++|++..+.
T Consensus 220 ~~~~lYil~~~~ 231 (410)
T PRK11021 220 LAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 38
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.76 E-value=2.1e-06 Score=93.88 Aligned_cols=235 Identities=13% Similarity=0.167 Sum_probs=139.7
Q ss_pred ccCCCCCHHHHHHHHHhhhhccccchhH-HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHH
Q psy15185 126 VLEHATTNNETLIHLLKGSLGTGILAMP-NAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSM 204 (611)
Q Consensus 126 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 204 (611)
+.+++.+.++.....++++||+|++.+| .+.+++|- .+++..++.+++.......+.|...+.+. .-...+..
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-----~Gg~~~~~ 82 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPD-----TGSFSTYA 82 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCHHHHH
Confidence 3457889999999999999999999999 77888885 36666677777776666666665554322 12455556
Q ss_pred HHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccch
Q psy15185 205 RVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKL 284 (611)
Q Consensus 205 ~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~ 284 (611)
++.+ ||+..+++.....+.....+.+.....++.+....+ ..+...+..+..+ +.-.......|.
T Consensus 83 ~~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~-~~~~~n~~gv~~ 147 (452)
T TIGR01773 83 DDAI----------GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP----DIPLWLFSLILTI-VLTLTNLYSVKS 147 (452)
T ss_pred HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCcHHHHHHHHHH-HHHHHHHHhcch
Confidence 6665 777888887777666665666665666665554433 2222222222222 222223334444
Q ss_pred hhhHHHHHHHHHH---HHHHhhhhe-ecccCCCC-----CCC---C--CcCCcchhhHHHHHHHHhcccccchhcchhhc
Q psy15185 285 LAPFSQLANVITF---IGLGITMYY-ICQALPPV-----SSR---P--YFGDPRNWNLFIGTTLFALEAVGVVIALENNM 350 (611)
Q Consensus 285 l~~~s~~~~~~i~---~~~~~v~~~-~~~~~~~~-----~~~---~--~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~m 350 (611)
...+.....+.-+ ..+++.... .....+.. .+. . .+..+.++...+....|+|.|...+....+|+
T Consensus 148 ~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~ 227 (452)
T TIGR01773 148 YGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES 227 (452)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh
Confidence 4444433222211 111111111 11111110 000 0 11223457777888999999999999999999
Q ss_pred cCCcc-cCccchhhhhHHHHHHHHHHHHHhHhhhh
Q psy15185 351 KTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVK 384 (611)
Q Consensus 351 k~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~ 384 (611)
|||+| .+| ++..+.....++|+.........
T Consensus 228 k~P~r~iPr---Ai~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 228 SNPIKSITR---ATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred cChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeE
Confidence 99965 444 77777777888888865544433
No 39
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.71 E-value=3e-06 Score=93.09 Aligned_cols=232 Identities=11% Similarity=0.128 Sum_probs=131.4
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhH-HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMP-NAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
.+++.+.++.....++++||+|++-.| .+++++|. ..+...++.+++......-+.|.... ..+..++.+.++
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-----~~~~~~~~~ya~ 91 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-----NLEYKSFSDFAS 91 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCcHHHHHH
Confidence 456889999999999999999999987 58888887 34555556666665555555554332 111124445666
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
+.+ |+...+++.-...+...-...+.....+..+....+ ......+..+..+. .........|..
T Consensus 92 ~~~----------g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p----~~~~~~~~~~~~~~-~~~iN~~g~~~~ 156 (469)
T PRK11049 92 DLL----------GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP----DLSDWVASLAVVLL-LLSLNLATVKMF 156 (469)
T ss_pred HHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 665 777777777776665543334444444444433322 22222222222222 222233344444
Q ss_pred hhHHHHHHHHH---HHHHHhhhheec-c--cCCC-----CCC----CC-CcCCcchhhHHHHHHHHhcccccchhcchhh
Q psy15185 286 APFSQLANVIT---FIGLGITMYYIC-Q--ALPP-----VSS----RP-YFGDPRNWNLFIGTTLFALEAVGVVIALENN 349 (611)
Q Consensus 286 ~~~s~~~~~~i---~~~~~~v~~~~~-~--~~~~-----~~~----~~-~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~ 349 (611)
+.+..+..+.- +..+++...... . +.++ ..+ .. .+..+.++...+....|+|.|-..+....+|
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 44443333222 111111111100 0 0011 000 00 0122345777888899999999999999999
Q ss_pred ccCCcc-cCccchhhhhHHHHHHHHHHHHHhHhh
Q psy15185 350 MKTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGY 382 (611)
Q Consensus 350 mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY 382 (611)
+|||+| .+| ++..+.....++|++....-+
T Consensus 237 ~knP~r~iPr---ai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 237 TKDPEKSLPR---AINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred hcCHhhHHHH---HHHHHHHHHHHHHHHHHHHHe
Confidence 999976 444 776667777888887666544
No 40
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.70 E-value=5.1e-06 Score=91.34 Aligned_cols=237 Identities=11% Similarity=0.035 Sum_probs=129.5
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHH-HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPN-AFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
.+++.+.++.....+..+||+|++..|- +.+++|-...++..++.+++......-+.|...+.++. -.+-+-.+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~a-----GG~y~y~~ 86 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPET-----GAFHVYAA 86 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCHHHHHH
Confidence 4467899999999999999999998885 45677754345566777777777777777766654322 13334445
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
+.+ |+...+++.....+.....+.+.....+..+.... +..+...+.++..+. +.....+..|..
T Consensus 87 ~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~-~~~in~~gvk~~ 151 (471)
T PRK11387 87 RYL----------GPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWF----PQVPVWPWCLLFCAL-IFGLNVVSTRFF 151 (471)
T ss_pred Hhc----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcCcHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 555 66666666665555444333333333332222211 122222222222222 222333444444
Q ss_pred hhHHHHHHHH---HHHHHHhhhhe-ec----c-c-CC--CCCCCC---C-cCCcchhhHHHHHHHHhcccccchhcchhh
Q psy15185 286 APFSQLANVI---TFIGLGITMYY-IC----Q-A-LP--PVSSRP---Y-FGDPRNWNLFIGTTLFALEAVGVVIALENN 349 (611)
Q Consensus 286 ~~~s~~~~~~---i~~~~~~v~~~-~~----~-~-~~--~~~~~~---~-~~~~~~~~~~~g~~~faf~~~~~i~~i~~~ 349 (611)
...+....+. .+..+++.... .. . + .+ ..++.. + +....++...+....|+|.|-..+...-+|
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4333222211 11111111111 00 0 0 00 000000 0 111234556666789999999999999999
Q ss_pred ccCCcc-cCccchhhhhHHHHHHHHHHHHHhHhhhhcC
Q psy15185 350 MKTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVKYG 386 (611)
Q Consensus 350 mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG 386 (611)
+|||+| .+| ++..+..++.++|+...+..-...+
T Consensus 232 ~knP~r~iPr---Ai~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 232 TENPAKVIPV---AIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred hcChhhHHHH---HHHHHHHHHHHHHHHHHHHHheecC
Confidence 999976 444 8888888889999888765444443
No 41
>PRK10746 putative transport protein YifK; Provisional
Probab=98.69 E-value=6.9e-06 Score=89.97 Aligned_cols=234 Identities=9% Similarity=0.111 Sum_probs=134.3
Q ss_pred CCCCCHHHHHHHHHhhhhccccchhH-HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGILAMP-NAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
+++.+.++....-+.++||+|++..| .+.+.+|- ..++..++.+++.......+.|.....+. .-++.+-+++
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-----sGg~~~y~~~ 82 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV-----TGSFAVYAHR 82 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCHHHHHHH
Confidence 46789999999999999999999987 57777786 35556666777777777777776655332 2356666666
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
.+ |+...+++.....+.......+.....+..+....+ ......+..+..+.+.. ...+..|...
T Consensus 83 ~~----------g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p----~~~~~~~~~~~~~~~~~-lN~~gv~~~~ 147 (461)
T PRK10746 83 YM----------SPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP----EMAQWIPALIAVALVAL-ANLAAVRLYG 147 (461)
T ss_pred Hh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCchHHHHHHHHHHHHH-HHHHhHHHHH
Confidence 66 666667777666655554445554444444443322 22233332222222211 2223333333
Q ss_pred hHHHH----HHHHHHHHHHhh---hheecc-cC-----CCCCCCC--CcCCcchhhHHHHHHHHhcccccchhcchhhcc
Q psy15185 287 PFSQL----ANVITFIGLGIT---MYYICQ-AL-----PPVSSRP--YFGDPRNWNLFIGTTLFALEAVGVVIALENNMK 351 (611)
Q Consensus 287 ~~s~~----~~~~i~~~~~~v---~~~~~~-~~-----~~~~~~~--~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk 351 (611)
.+... -+..++..+++. ...... +. .+..+.. ....+.++..++....|+|.+-..+....+|+|
T Consensus 148 ~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~k 227 (461)
T PRK10746 148 EIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAK 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 33221 111111111111 111111 10 0111110 112356677888899999999999999999999
Q ss_pred CCcc-cCccchhhhhHHHHHHHHHHHHHhHhhhhc
Q psy15185 352 TPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVKY 385 (611)
Q Consensus 352 ~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~f 385 (611)
||+| .+| ++..++....++|+......-...
T Consensus 228 nP~k~iP~---Ai~~~~~~i~~~yv~~~~~~~~~~ 259 (461)
T PRK10746 228 NPQVTLRS---AVGKVLWRILIFYVGAIFVIVTIF 259 (461)
T ss_pred ChhhHHHH---HHHHHHHHHHHHHHHHHHHHeeee
Confidence 9965 444 777777777888887654443333
No 42
>PRK10836 lysine transporter; Provisional
Probab=98.64 E-value=1.2e-05 Score=88.74 Aligned_cols=236 Identities=12% Similarity=0.101 Sum_probs=123.2
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHH-HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPN-AFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
.+++.+.++.....+.++||+|++..|- +.+++|-...++..++.+++......-+.|...+.++. -....-.+
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~s-----Gg~y~y~~ 87 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVS-----GSFATYGQ 87 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCHHHHHH
Confidence 3467899999999999999999999995 77788864457777788888888887777776654432 12333333
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
+.+ |+...+++.....+.. ..+.+......+.+ ...+.+......+..+....+ ..-.....|..
T Consensus 88 ~~~----------g~~~gf~~Gw~~~~~~-~~~~a~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~-~~lN~~gv~~~ 152 (489)
T PRK10836 88 NYV----------EEGFGFALGWNYWYNW-AVTIAVDLVAAQLV---MSWWFPDTPGWIWSALFLGVI-FLLNYISVRGF 152 (489)
T ss_pred HHc----------ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---hhhcCCCCchHHHHHHHHHHH-HHHHHHcchhh
Confidence 443 4444455444433322 11222211222211 111111112222222211111 12222333333
Q ss_pred hhHH---HHHHHHHHHHHH---hhhheec-ccCC-----CCCC--CCCcCCcchhhHHHHHHHHhcccccchhcchhhcc
Q psy15185 286 APFS---QLANVITFIGLG---ITMYYIC-QALP-----PVSS--RPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMK 351 (611)
Q Consensus 286 ~~~s---~~~~~~i~~~~~---~v~~~~~-~~~~-----~~~~--~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk 351 (611)
+... .+..+..+..++ +...... .+.+ +.++ .+....+.++........|+|.|-..+...-+|+|
T Consensus 153 ~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~k 232 (489)
T PRK10836 153 GEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESE 232 (489)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhc
Confidence 2222 211221111111 1111111 1100 1110 00111223333344456799999999999999999
Q ss_pred CCcc-cCccchhhhhHHHHHHHHHHHHHhHhhhhc
Q psy15185 352 TPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVKY 385 (611)
Q Consensus 352 ~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~f 385 (611)
||+| .+| ++..++..+.++|++....-....
T Consensus 233 nP~r~iPr---Ai~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 233 DPAKNIPR---AVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHHHHHheec
Confidence 9965 444 888899999999998876544443
No 43
>KOG1305|consensus
Probab=98.62 E-value=1.8e-07 Score=99.44 Aligned_cols=88 Identities=18% Similarity=0.310 Sum_probs=76.9
Q ss_pred hhhhhccccCccc--cccccchhhhHHHHHHHHHHHHHHHHHhhhccccccceeccCCCCcHH------HHHHHHHHHHH
Q psy15185 492 VIALENNMKTPAS--FGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIL------AQSVNAIFAVA 563 (611)
Q Consensus 492 ~~pi~~~mk~p~~--f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~~~~~i~~nlp~~~~~------~~~~~~~~~~~ 563 (611)
++|++++||||++ +.+ +-+.+...++.+|..+|.+||++|||++++++..|+|+++.. ...++..++++
T Consensus 213 ~~~i~~El~~~s~~~i~~---v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~ 289 (411)
T KOG1305|consen 213 VFPIYNELKDRSVKKIQR---VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVA 289 (411)
T ss_pred ceeeeeeeeCchHHHHHH---HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHH
Confidence 7899999999986 666 999999999999999999999999999999999999975443 47999999999
Q ss_pred HHHHhccccchhHHHHHhh
Q psy15185 564 IFISYGLQCYVPVEIIWSR 582 (611)
Q Consensus 564 ~~~~ypl~~~~~~~i~~~~ 582 (611)
...++|++.||.-+-+.+.
T Consensus 290 ~~l~~pi~~fPlr~~l~~~ 308 (411)
T KOG1305|consen 290 VLLTFPIVLFPLRMNLDEL 308 (411)
T ss_pred HHHHHHHHhchHHHHHHHH
Confidence 9999999999555444333
No 44
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.62 E-value=1.6e-05 Score=87.69 Aligned_cols=230 Identities=15% Similarity=0.164 Sum_probs=135.1
Q ss_pred CCCCHHHHHHHHHhhhhccccchhH-HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTGILAMP-NAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
++.+.++.....+..++|+|++..| .+.+++|-...++..++.+++.......+.|.....++. .-.|.+..++.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~----gG~~~~~~~~~ 77 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV----SGSFATYASRF 77 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHH
Confidence 4678899999999999999999877 677777744335556667777777777777766553321 12466666666
Q ss_pred HhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhh
Q psy15185 208 LQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAP 287 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~ 287 (611)
+ |+...+++.....+.....+.+.....++.+....+ ......+..+..+ +.-+-..+..|..+.
T Consensus 78 ~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 78 V----------DPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD----KVNPAVWIAIFYV-FIVIINLFGVKGYGE 142 (478)
T ss_pred c----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHH-HHHHHHHhcchHHHH
Confidence 6 777777777766666555555555555555543221 2222233222222 222223445555544
Q ss_pred HHHHHHH---HHHHHHHhhh-heecccCCCCC--------CCCCcC------CcchhhHHHHHHHHhcccccchhcchhh
Q psy15185 288 FSQLANV---ITFIGLGITM-YYICQALPPVS--------SRPYFG------DPRNWNLFIGTTLFALEAVGVVIALENN 349 (611)
Q Consensus 288 ~s~~~~~---~i~~~~~~v~-~~~~~~~~~~~--------~~~~~~------~~~~~~~~~g~~~faf~~~~~i~~i~~~ 349 (611)
+..+... ..+..+++.. .....+.++.+ +...+. .+.++...+....|+|.|-..+....+|
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 4433321 1111111111 11111111100 000110 1345666777789999999999999999
Q ss_pred ccCCcc-cCccchhhhhHHHHHHHHHHHHHhH
Q psy15185 350 MKTPAS-FGGYYGVLNQGMFAIVIMYVIMGFL 380 (611)
Q Consensus 350 mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~ 380 (611)
+|||+| .+| ++..+..++.++|.+..+.
T Consensus 223 ~knP~r~iPr---ai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 223 AANPRKSIPR---AAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hcChhhHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 999965 444 8889999999999987644
No 45
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.57 E-value=2e-05 Score=86.31 Aligned_cols=227 Identities=13% Similarity=0.165 Sum_probs=129.3
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHH-HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPN-AFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
.+++.+.++..+..++++||+|++..|- +.+++|- ..++..++.+++......-+.|...+.+. .-++.+-.+
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-----aGg~y~~~~ 83 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV-----AGSFSHFAY 83 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCHHHHHH
Confidence 4568899999999999999999998885 5566664 44555566666666666666665554332 124444445
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
+.+ ||...+++.....+.....+.+.....++.+....+ ..+...+..+..+. .........|..
T Consensus 84 ~~~----------g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~i~~~~-~~~lN~~gv~~~ 148 (456)
T PRK10238 84 KYW----------GSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP----EIPTWVSAAVFFVV-INAINLTNVKVF 148 (456)
T ss_pred HHc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCcHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 554 888888888887777766666666666666554432 22233232222222 222222233334
Q ss_pred hhHHHHHHHHHH---HHHHh-hhheecc--cCCCC--CC---CC-C-cCCcchhhHHHHHHHHhcccccchhcchhhccC
Q psy15185 286 APFSQLANVITF---IGLGI-TMYYICQ--ALPPV--SS---RP-Y-FGDPRNWNLFIGTTLFALEAVGVVIALENNMKT 352 (611)
Q Consensus 286 ~~~s~~~~~~i~---~~~~~-v~~~~~~--~~~~~--~~---~~-~-~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~ 352 (611)
..+.....+.-+ ..+++ .+..... +.+.. .+ .. . +..+.++...++...|+|.|-..+....+|+||
T Consensus 149 ~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~kn 228 (456)
T PRK10238 149 GEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADN 228 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 333333222221 11111 1111111 11110 00 00 0 112345556677889999999999999999999
Q ss_pred Ccc-cCccchhhhhHHHHHHHHHHHH
Q psy15185 353 PAS-FGGYYGVLNQGMFAIVIMYVIM 377 (611)
Q Consensus 353 p~~-~~~~~~v~~~a~~i~~~~Y~~~ 377 (611)
|+| .+| ++..+.....+.|...
T Consensus 229 P~r~iPr---Ai~~~~~~i~~~y~~~ 251 (456)
T PRK10238 229 PEQSIPK---ATNQVIYRILIFYIGS 251 (456)
T ss_pred hhhHHHH---HHHHHHHHHHHHHHHH
Confidence 976 444 7766666666667554
No 46
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.56 E-value=2.6e-05 Score=85.41 Aligned_cols=231 Identities=12% Similarity=0.111 Sum_probs=130.0
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHH-HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPN-AFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
.+++.+.++.+...+.+++|+|++.+|. +.+.+|- ..++..++.+++.......+.|...+.+.. -..-+..+
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~-----Gg~y~y~~ 80 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAA-----SSFSRYAQ 80 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCHHHHHH
Confidence 3457899999999999999999999985 4666775 356667777777777777777766554321 13333445
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
+.+ ||...+++.....+.......+.....+..+....+ ......+.+...+ +.-....+..|..
T Consensus 81 ~~~----------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-l~~~ln~~gv~~~ 145 (457)
T PRK10580 81 ENL----------GPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP----TVPHWIWVLSVVL-IICAVNLMSVKVF 145 (457)
T ss_pred HHc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCChHHHHHHHHH-HHHHHHHccchhH
Confidence 555 777777777766554443333333334444333222 2222223222222 2222333444544
Q ss_pred hhHHHHHHHHHHHH---HHh----hhheeccc--CCC-----CCC-CCCcCCcchhhHHHHHHHHhcccccchhcchhhc
Q psy15185 286 APFSQLANVITFIG---LGI----TMYYICQA--LPP-----VSS-RPYFGDPRNWNLFIGTTLFALEAVGVVIALENNM 350 (611)
Q Consensus 286 ~~~s~~~~~~i~~~---~~~----v~~~~~~~--~~~-----~~~-~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~m 350 (611)
..+.....+..+.. +++ +......+ .+. .++ ...+..+.++...+....|+|.|-..+....+|+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 44433222211111 111 01111111 010 000 0011223456667778899999999999999999
Q ss_pred cCCcc-cCccchhhhhHHHHHHHHHHHHHhHh
Q psy15185 351 KTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLG 381 (611)
Q Consensus 351 k~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~G 381 (611)
|||+| .+| ++..+.....++|......-
T Consensus 226 knP~k~iPr---Ai~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 226 KDPEKSIPR---AINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred cChhhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 99976 444 67677777777887765443
No 47
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.54 E-value=1e-05 Score=87.75 Aligned_cols=236 Identities=12% Similarity=0.099 Sum_probs=142.4
Q ss_pred CHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhc
Q psy15185 132 TNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILC-TYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQ 210 (611)
Q Consensus 132 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls-~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~ 210 (611)
++++++...+++++|+|+...| ...+.|.. .++..++.+.+. ........|...+. ++.-....-.++.+
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~-----p~~GG~y~~~~~~~-- 72 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAY-----PSAGGIYVWVSRAF-- 72 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTT-----TSSTTHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccC-----CCcCeeeehhhhcc--
Confidence 6788999999999999999999 77777764 444444444443 45555555543321 22224445555655
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccch-HHHHHHHHHHHHHHhhcccccchhhhHH
Q psy15185 211 GPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMD-VRIVMVLLLLPLIGINSIRNLKLLAPFS 289 (611)
Q Consensus 211 G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~-~~~~~~i~~~~~~~l~~~~~l~~l~~~s 289 (611)
||...++......+.......++.....+.+...+.......+ ......+..+.....-..+..|...+++
T Consensus 73 --------g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~ 144 (426)
T PF13520_consen 73 --------GPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQ 144 (426)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred --------cccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhh
Confidence 7888888888887777777777777777776655432111111 1111222222233333445566666665
Q ss_pred HHHHHHHH-HHHHhhh---heecc-cCCC---C-CCCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCCcccCccc
Q psy15185 290 QLANVITF-IGLGITM---YYICQ-ALPP---V-SSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPASFGGYY 360 (611)
Q Consensus 290 ~~~~~~i~-~~~~~v~---~~~~~-~~~~---~-~~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~~~~~~ 360 (611)
....+..+ ..+++.+ ..... +..+ . .+......+......+....|+|.|-.......+|+|| |+.+|
T Consensus 145 ~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~-- 221 (426)
T PF13520_consen 145 NILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPR-- 221 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHH--
T ss_pred hhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhhee--
Confidence 55554444 2221111 11111 1100 0 01112234556778888999999999999999999988 66666
Q ss_pred hhhhhHHHHHHHHHHHHHhHhhhhcCcc
Q psy15185 361 GVLNQGMFAIVIMYVIMGFLGYVKYGSA 388 (611)
Q Consensus 361 ~v~~~a~~i~~~~Y~~~g~~GY~~fG~~ 388 (611)
++..+..++.++|.+....-....+++
T Consensus 222 -ai~~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 222 -AIIISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred -ecccchhHHHHHHhhhhheeeecccch
Confidence 999999999999999988777666653
No 48
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.51 E-value=3.2e-05 Score=84.41 Aligned_cols=232 Identities=12% Similarity=0.126 Sum_probs=128.9
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHHH-Hhhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPNA-FVNSGLV-IGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSM 204 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~-~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 204 (611)
.+++.+.++.+...+..++|+|++..|.. .++.|-. ..++..++.+++.........|.....++..+ .|.-.
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG----~y~y~- 80 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA----DYVYL- 80 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----ceeeH-
Confidence 44688999999999999999999999976 4455632 34445566667777777777776665443211 23222
Q ss_pred HHHHhcCCchhhhhhhhHHHHHHHHHH-HHhhhhhHHHHHHHHhhHHHHHHhhcccchHH--HHHHHHHHHHHHhhcccc
Q psy15185 205 RVALQQGPPCLRFAANASAIIVDMFLI-VYQLGICCVYIMFVATNIKPVTDAYIAVMDVR--IVMVLLLLPLIGINSIRN 281 (611)
Q Consensus 205 ~~~~~~G~~~~~~~G~~g~~~v~i~~~-~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~--~~~~i~~~~~~~l~~~~~ 281 (611)
++.+ |+...++...... .........+....++.+....+ ++.. ....+..+.++-....+.
T Consensus 81 ~~~~----------g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-----~~~~~~~~~~~~~~~~~~~ln~~g 145 (445)
T PRK11357 81 KNAG----------SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-----IDPLLGKFIAAGLIIAFMLLHLRS 145 (445)
T ss_pred HHhc----------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHHHhh
Confidence 2333 5555555555432 22222333444555555443221 1111 111122222222233445
Q ss_pred cchhhhHHHHHHHHHHHHHH---hhhheecccCCCCC-CCC----CcCCcchhhHHHHHHHHhcccccchhcchhhccCC
Q psy15185 282 LKLLAPFSQLANVITFIGLG---ITMYYICQALPPVS-SRP----YFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTP 353 (611)
Q Consensus 282 l~~l~~~s~~~~~~i~~~~~---~v~~~~~~~~~~~~-~~~----~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p 353 (611)
.+....+..+..+..+..++ ++......+ .+.. +.+ ...++.++...+....|+|.+-.......+|+|||
T Consensus 146 v~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P 224 (445)
T PRK11357 146 VEGGAAFQTLITIAKIIPFTIVIGLGIFWFKA-ENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNP 224 (445)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCc
Confidence 55444444444333222221 111111111 1111 001 11123456666778899999999999999999999
Q ss_pred ccc-CccchhhhhHHHHHHHHHHHHHhHhh
Q psy15185 354 ASF-GGYYGVLNQGMFAIVIMYVIMGFLGY 382 (611)
Q Consensus 354 ~~~-~~~~~v~~~a~~i~~~~Y~~~g~~GY 382 (611)
+|. +| ++..++.++.++|.+......
T Consensus 225 ~r~iP~---Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 225 GKTMPR---ALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cccchH---HHHHHHHHHHHHHHHHHHHHH
Confidence 764 44 899999999999998876544
No 49
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.49 E-value=5.5e-06 Score=86.32 Aligned_cols=235 Identities=13% Similarity=0.154 Sum_probs=150.3
Q ss_pred CCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHh
Q psy15185 130 ATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQ 209 (611)
Q Consensus 130 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~ 209 (611)
|.|..|....+..+.+|+|++.+|....+.+ --|-+..++.+.....-..+..+..++. +..+..|..++.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~------p~~~l~~~~~~~~- 72 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRF------PGKTLVEISEKLF- 72 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHh-
Confidence 4578899999999999999999999876653 1222333333444444444444444332 2348899998887
Q ss_pred cCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHH
Q psy15185 210 QGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFS 289 (611)
Q Consensus 210 ~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s 289 (611)
||+...++.+...+..+......+...+|.+....-. +.+......... ....-..-+.++.++-.+
T Consensus 73 ---------Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp---~TP~~~i~~~~l-l~~~y~a~~G~e~i~R~~ 139 (320)
T PF03845_consen 73 ---------GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP---ETPIWVIILLFL-LVAAYAARKGIEVIARVA 139 (320)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cCCHHHHHHHHH-HHHHHHHhcCHHHHHHHH
Confidence 8998889888888888877777777777777665432 333333333333 333333345666666545
Q ss_pred HHHHHHHHHHHHhhhheecccCCCCCCC-CC-cCCcchhhHHHHHHHHhcccccchhcchhhccCCcccCccchhhhhHH
Q psy15185 290 QLANVITFIGLGITMYYICQALPPVSSR-PY-FGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPASFGGYYGVLNQGM 367 (611)
Q Consensus 290 ~~~~~~i~~~~~~v~~~~~~~~~~~~~~-~~-~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~~~~~~~v~~~a~ 367 (611)
.+-....+.....+......+. +++.. |. ..++.+.....-...+.|.+.....-+...+|+|+|.+| ....+.
T Consensus 140 ~~~~~~~~i~~~~i~~~~~~~~-~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k---~~~~~~ 215 (320)
T PF03845_consen 140 EILFPIFLILLLLILLLSIPNI-DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKK---SLLIAI 215 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcccC-CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH---HHHHHH
Confidence 4444444444333333333221 11111 11 234556666666667778777777778888898888777 888999
Q ss_pred HHHHHHHHHHHhHhhhhcCccc
Q psy15185 368 FAIVIMYVIMGFLGYVKYGSAA 389 (611)
Q Consensus 368 ~i~~~~Y~~~g~~GY~~fG~~~ 389 (611)
.++.++|...-+..-..||.+.
T Consensus 216 ~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 216 LISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999998888888999753
No 50
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.42 E-value=7.4e-05 Score=81.91 Aligned_cols=241 Identities=12% Similarity=0.108 Sum_probs=140.4
Q ss_pred CCCCCHHH-HHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 128 EHATTNNE-TLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 128 ~~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
+++.+.++ ........++|.|++.+|......+ ....+..++.+++.........|...+.+ +.-.+-+-.++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p-----~~GG~y~~~~~ 84 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIP-----SAGGAYAYAKR 84 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCeeeehhh
Confidence 34667777 7777888999999999998887776 22222234444444444455555444221 11234444455
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-cch--HHHHHHHHHHHHHHhhcccccc
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-VMD--VRIVMVLLLLPLIGINSIRNLK 283 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~~~--~~~~~~i~~~~~~~l~~~~~l~ 283 (611)
.+ |+...+.+.....+.......+......+.+..+.+.... ..+ ......+....+..+...+..|
T Consensus 85 ~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~ 154 (466)
T COG0531 85 AL----------GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIK 154 (466)
T ss_pred hc----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 55 6666677777777777777777777777766655553110 000 1111112222223333445555
Q ss_pred hhhhHHHHHHHHHHHHHHhhhheecccCCC--CCCCC----CcCCcchhhHHHHHHHHhcccccchhcchhhccCCccc-
Q psy15185 284 LLAPFSQLANVITFIGLGITMYYICQALPP--VSSRP----YFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPASF- 356 (611)
Q Consensus 284 ~l~~~s~~~~~~i~~~~~~v~~~~~~~~~~--~~~~~----~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~~- 356 (611)
.......+..+.-+...++.........+. ..... ....+..+...+....++|.|-..+....+|+|||+|.
T Consensus 155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 155 ASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 555555544444433333222221111111 11111 11123456677778899999999999999999999654
Q ss_pred CccchhhhhHHHHHHHHHHHHHhHhhhhcCc
Q psy15185 357 GGYYGVLNQGMFAIVIMYVIMGFLGYVKYGS 387 (611)
Q Consensus 357 ~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~ 387 (611)
+| .+..++..+.++|.+....-....++
T Consensus 235 p~---aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 235 PR---AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 55 88999999999999999888877775
No 51
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.35 E-value=0.00063 Score=71.80 Aligned_cols=238 Identities=11% Similarity=0.144 Sum_probs=149.8
Q ss_pred CCCCCHHHHHHHHHhhhhccccc-hhHHHHhhcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGIL-AMPNAFVNSGLVIGTVGT-ILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~giill-~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
+++.+..+--+.-+...||+|.+ +--.+.+.+| +++++- ++.|++.+.-++.|.|...+ +++..|+.+.++
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~-----~p~~gSF~~~a~ 84 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVA-----NPVSGSFSDYAR 84 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCcHHHHHH
Confidence 35677778888889999999964 6667888888 455443 66777777788888886654 334459999999
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHH--HHhhcccccc
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPL--IGINSIRNLK 283 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~--~~l~~~~~l~ 283 (611)
+.+ |++..++.+-.-...-.-.+++-+..++..++..++. .+.+.+.++..+++ .-+...|.+.
T Consensus 85 ~~l----------G~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~----vP~Wv~al~~~~l~~~~NL~sVk~FG 150 (462)
T COG1113 85 KYL----------GPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD----VPQWVFALAAVVLLLAVNLISVKVFG 150 (462)
T ss_pred HHh----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 8888888888777777777888888888777777663 34455444333332 4444455555
Q ss_pred hhhh-HHHHHHHHHHHHHHhhhheecccCCCCC---------CC--CCcCCcchhhHHHHHHHHhcccccchhcchhhcc
Q psy15185 284 LLAP-FSQLANVITFIGLGITMYYICQALPPVS---------SR--PYFGDPRNWNLFIGTTLFALEAVGVVIALENNMK 351 (611)
Q Consensus 284 ~l~~-~s~~~~~~i~~~~~~v~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk 351 (611)
++.+ ++++=+..++..+++..+....+.++.. +. -.++.+.++..++-+.+|||.+...+--...|-|
T Consensus 151 E~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~ 230 (462)
T COG1113 151 ELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAK 230 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 5543 3443333333222222222111111111 11 1234567888889999999999999999999999
Q ss_pred CCcccCccchhhh-----hHHHHHHHHHHHHHhHhhhhcCcc
Q psy15185 352 TPASFGGYYGVLN-----QGMFAIVIMYVIMGFLGYVKYGSA 388 (611)
Q Consensus 352 ~p~~~~~~~~v~~-----~a~~i~~~~Y~~~g~~GY~~fG~~ 388 (611)
||+|--. |++. +...-+..+..++.+.-+-.++++
T Consensus 231 dP~k~ip--kAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~ 270 (462)
T COG1113 231 DPEKAIP--KAINSVIWRILIFYVGSLFVILSLYPWNQIGED 270 (462)
T ss_pred ChhhHHH--HHHhhhhHHHHHHHHHHHHHHheeccccccCCC
Confidence 9965431 1332 333333444455555555445443
No 52
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.34 E-value=8.4e-05 Score=81.14 Aligned_cols=217 Identities=12% Similarity=0.133 Sum_probs=122.4
Q ss_pred HhhhhccccchhHH-HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhhhh
Q psy15185 141 LKGSLGTGILAMPN-AFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAA 219 (611)
Q Consensus 141 ~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~~G 219 (611)
+.++||+|++..|- +.+++|- ..++..++.+++.......+.|...+.++ .-..-+-.++.+ |
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~-----~Gg~y~y~~~~~----------G 67 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD-----TGSFSTYADKAI----------G 67 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHc----------C
Confidence 56899999999996 8888896 46666777777777777777776554332 124444455555 7
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH---H
Q psy15185 220 NASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVI---T 296 (611)
Q Consensus 220 ~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~---i 296 (611)
++..+++.....+.............+..+... .+..+...+..+..+.+. .-.....|..+.+..+..+. .
T Consensus 68 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 68 RWAGYTIGWLYWWFWVLVIPLEANIAAMILHSW----VPGIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHH
Confidence 777777776666554444433333333333222 112222232222222222 22233444444434333322 2
Q ss_pred HHHHHhhhheeccc-CCCC---------CCCC-CcCCcchhhHHHHHHHHhcccccchhcchhhccCCcc-cCccchhhh
Q psy15185 297 FIGLGITMYYICQA-LPPV---------SSRP-YFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS-FGGYYGVLN 364 (611)
Q Consensus 297 ~~~~~~v~~~~~~~-~~~~---------~~~~-~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~-~~~~~~v~~ 364 (611)
+..+++.......+ .+.. ++.. .+..+.++..++....|+|.|-..+....+|+|||+| .+| ++.
T Consensus 143 li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPr---ai~ 219 (446)
T PRK10197 143 ILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVR---ATN 219 (446)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHH---HHH
Confidence 22221111111111 0100 0000 1223457778888899999999999999999999976 444 777
Q ss_pred hHHHHHHHHHHHHHhHh
Q psy15185 365 QGMFAIVIMYVIMGFLG 381 (611)
Q Consensus 365 ~a~~i~~~~Y~~~g~~G 381 (611)
.++..+.++|+...+.-
T Consensus 220 ~~~~~i~i~Yil~~~~~ 236 (446)
T PRK10197 220 SVIWRISIFYLCSIFVV 236 (446)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888998876653
No 53
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.11 E-value=0.0024 Score=70.51 Aligned_cols=237 Identities=10% Similarity=0.009 Sum_probs=115.0
Q ss_pred CCCCCHHHHHHHHHhhhhc--cccc-hhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHH
Q psy15185 128 EHATTNNETLIHLLKGSLG--TGIL-AMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSM 204 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG--~GiL-~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 204 (611)
+++.+.++.+..-+. .+| +|+. +.+.+.++.|-..-+...++.+++.......+.|...+.+.. -..-.-.
T Consensus 11 ~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~-----Gg~y~~~ 84 (482)
T TIGR00907 11 KREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTS-----GGQYFWS 84 (482)
T ss_pred ecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCC-----ccHHHHH
Confidence 346677766554444 444 4553 345677778865556667777777777777777766543321 1222333
Q ss_pred HHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhccc--c-hHHH-H--HHHHHHHHHHhhc
Q psy15185 205 RVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAV--M-DVRI-V--MVLLLLPLIGINS 278 (611)
Q Consensus 205 ~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~--~-~~~~-~--~~i~~~~~~~l~~ 278 (611)
++.+ |+. +|+...+++.-...+.....+.+.....++.+..+.....+. + ...+ . ..+....+.....
T Consensus 85 ~~~~--g~~----~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in 158 (482)
T TIGR00907 85 AKLA--PPR----QMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALIN 158 (482)
T ss_pred HHhc--ccc----cccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHH
Confidence 4444 322 356666666665555555555555555555555443321111 1 1111 1 1111112222222
Q ss_pred ccccchhhhHHHHHHHHHHHHHH-hhhheecccCCCC-------CCCC-CcCCc--c--hhhHHHHHHHHhcccccchhc
Q psy15185 279 IRNLKLLAPFSQLANVITFIGLG-ITMYYICQALPPV-------SSRP-YFGDP--R--NWNLFIGTTLFALEAVGVVIA 345 (611)
Q Consensus 279 ~~~l~~l~~~s~~~~~~i~~~~~-~v~~~~~~~~~~~-------~~~~-~~~~~--~--~~~~~~g~~~faf~~~~~i~~ 345 (611)
....|..+.+..+..+..+..++ +.+.......++. ++.. ....+ . .+...+-...|+|.+-..+..
T Consensus 159 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~ 238 (482)
T TIGR00907 159 SLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAH 238 (482)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhH
Confidence 33334444444333322222222 1111111111110 0000 00011 1 223333446799999999999
Q ss_pred chhhccCCcc-cCccchhhhhHHHHHHHHHHHHHh
Q psy15185 346 LENNMKTPAS-FGGYYGVLNQGMFAIVIMYVIMGF 379 (611)
Q Consensus 346 i~~~mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~ 379 (611)
.-+|+|||+| .+| ++..+..+..+++.+..+
T Consensus 239 ~a~E~knP~r~iP~---Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 239 MAEEIENPEVVGPR---AIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred HHHhcCChhhhcCH---HHHHHHHHHHHHHHHHHH
Confidence 9999999965 444 777777766554443333
No 54
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.94 E-value=0.0057 Score=67.39 Aligned_cols=241 Identities=9% Similarity=-0.012 Sum_probs=116.7
Q ss_pred CCCCCHHHHHHHHHhh-hhccccchhH-HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 128 EHATTNNETLIHLLKG-SLGTGILAMP-NAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~-~iG~GiL~LP-~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
+++.+.++.+..-++. .+|+|+.+.| .+..++|- ..+...++.++........+.|...+.+.. --.|.- .+
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~a----GG~Y~~-~~ 85 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPIS----GAIYQW-SR 85 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CCHHHH-HH
Confidence 3567888887776665 4899998877 45556665 344445555555555555556655443221 112332 33
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhh---c--ccch------HHHHHHHHHHHHH
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAY---I--AVMD------VRIVMVLLLLPLI 274 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~---~--~~~~------~~~~~~i~~~~~~ 274 (611)
+.+ |+...+++.-...+.......+........+..+.... . +.+. ......+..+.+.
T Consensus 86 ~~~----------g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
T TIGR03428 86 RMG----------GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLT 155 (475)
T ss_pred HHc----------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHH
Confidence 444 56555666555554443333333333333433332110 0 0110 1111111222222
Q ss_pred HhhcccccchhhhHHHHHHHHHHHHHHhhhhee---cccCCCC--CCC--CCcCCc-chhhHHHHHHHHhcccccchhcc
Q psy15185 275 GINSIRNLKLLAPFSQLANVITFIGLGITMYYI---CQALPPV--SSR--PYFGDP-RNWNLFIGTTLFALEAVGVVIAL 346 (611)
Q Consensus 275 ~l~~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~---~~~~~~~--~~~--~~~~~~-~~~~~~~g~~~faf~~~~~i~~i 346 (611)
-....+..|..+.+..+..+..+..+++++... ..+.+.. +.. ....++ ..+....-...|+|.|-..+..+
T Consensus 156 ~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 235 (475)
T TIGR03428 156 TVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGEL 235 (475)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 222333445555554444333222222221111 1110100 000 000011 12333444568999999999999
Q ss_pred hhhccCCcccCccchhhhhHHHHHHHHHHHHHhHhhhhcC
Q psy15185 347 ENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYG 386 (611)
Q Consensus 347 ~~~mk~p~~~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG 386 (611)
-+|+|||+|.- |+++..+..+..++|.+.-+......+
T Consensus 236 aeE~knP~r~i--Prai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 236 SEETKNPRRVA--PRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHhcCcchhh--hHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999997632 338888888777666555554444434
No 55
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.91 E-value=2.2e-05 Score=84.49 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=83.4
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccCCCCchHHHHHHhhcCChhhhhhhhhhhHHHHHHHH
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLI 80 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~v~~~~~ 80 (611)
||.|++.+|+|.|++.+++.+..+.+|..++++|..+. +.+..++.+..|+.+. +.+|.++|+.+.
T Consensus 30 lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~----~~~~~~~~~~~~~~~G----------~~~~~li~~s~~ 95 (415)
T COG0814 30 LPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSS----PNGKASITSLVEDYLG----------KKGGILIGLSYF 95 (415)
T ss_pred hhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCcccHHHHHHHHhC----------cchHHHHHHHHH
Confidence 79999999999999999999999999999999998843 4444688998888877 889999999999
Q ss_pred HHHHhhhHHHHhhhcccccccceeccc
Q psy15185 81 VYQLGICCVYIMFVATNIKPVSIYYFS 107 (611)
Q Consensus 81 ~~~~g~~~vy~~~ia~nl~~v~~~~~~ 107 (611)
+.++|.+..|.+.+++++.+..+.+..
T Consensus 96 ~~~~~~~~aY~~~~g~~l~~~~~~~~~ 122 (415)
T COG0814 96 FALYGLLVAYIVGIGNLLASFLGNQFG 122 (415)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHhhcc
Confidence 999999999999999999998876533
No 56
>KOG1286|consensus
Probab=97.85 E-value=0.00018 Score=79.52 Aligned_cols=240 Identities=13% Similarity=0.120 Sum_probs=142.0
Q ss_pred ccCCCCCHHHHHHHHHhhhhccccc-hhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHH
Q psy15185 126 VLEHATTNNETLIHLLKGSLGTGIL-AMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSM 204 (611)
Q Consensus 126 ~~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~ 204 (611)
+.+++.+.+.-.+.=+.++||+|++ ....+.++.|=..-++-.++.+...+.++.-+.|...+.+... -++..-+
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~a----Gs~~~ya 102 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSA----GSFYTYA 102 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccccc----ccceeee
Confidence 4456777887777788999999998 4568888888776677777778888888888888766544210 0111112
Q ss_pred HHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHH---------Hhhcc-cchHHHHHHHHHHHHH
Q psy15185 205 RVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVT---------DAYIA-VMDVRIVMVLLLLPLI 274 (611)
Q Consensus 205 ~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~---------~~~~~-~~~~~~~~~i~~~~~~ 274 (611)
++. .|+...+++.--.++.-+-.+.+-....+..++... +.... .+-...+.++..+.++
T Consensus 103 ~~~----------i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~ 172 (554)
T KOG1286|consen 103 YRF----------VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLF 172 (554)
T ss_pred eee----------eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHH
Confidence 222 255556666666666666666666666666666654 11100 1112222233333333
Q ss_pred HhhcccccchhhhHHHHHHHHHHHHHHhhhheec--ccCCCCCCCC-------C-cCCcchhhHHHHHHHHhcccccchh
Q psy15185 275 GINSIRNLKLLAPFSQLANVITFIGLGITMYYIC--QALPPVSSRP-------Y-FGDPRNWNLFIGTTLFALEAVGVVI 344 (611)
Q Consensus 275 ~l~~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~--~~~~~~~~~~-------~-~~~~~~~~~~~g~~~faf~~~~~i~ 344 (611)
.....-..++...+..+-++..++.+.+++.... .+..++...+ . +..++++...+-+..|+|.|-..+-
T Consensus 173 gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va 252 (554)
T KOG1286|consen 173 GVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVA 252 (554)
T ss_pred HHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHH
Confidence 4333344444433333222222222222222221 1111221111 1 1226788888999999999999999
Q ss_pred cchhhccCCcccCccchhhhhHHHHHHHHHHHHHhHh
Q psy15185 345 ALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLG 381 (611)
Q Consensus 345 ~i~~~mk~p~~~~~~~~v~~~a~~i~~~~Y~~~g~~G 381 (611)
..-+|-|||+|- .|+++..++..++++|+...+.-
T Consensus 253 ~~a~E~kNP~k~--IP~ai~~s~~ri~~~Yi~~~~~l 287 (554)
T KOG1286|consen 253 TTAEEAKNPRKA--IPKAIKQSLLRILLFYILSSIVL 287 (554)
T ss_pred HHHHhccCCccc--ccHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999643 23489999999999999988753
No 57
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.75 E-value=0.016 Score=63.31 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=102.9
Q ss_pred CChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhccc---ch-----HHHH-HHH
Q psy15185 198 LNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAV---MD-----VRIV-MVL 268 (611)
Q Consensus 198 ~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~---~~-----~~~~-~~i 268 (611)
.++..+.|..| |.+|..+..+...+..+|=...-....++.+..++....+. .+ .... .++
T Consensus 76 l~~~v~sR~~F----------G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i 145 (442)
T TIGR00800 76 LPFPVLSRASF----------GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFII 145 (442)
T ss_pred CCcchhhhhhh----------hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHH
Confidence 46888888887 88999999999999999999999999999888888776442 11 1121 222
Q ss_pred HHHHHHHhhcccccchhhhHHHHHHHHHHHHHHhhhheeccc--CCCCCCC----CCcCCcchhhHHHHH-HHHhccccc
Q psy15185 269 LLLPLIGINSIRNLKLLAPFSQLANVITFIGLGITMYYICQA--LPPVSSR----PYFGDPRNWNLFIGT-TLFALEAVG 341 (611)
Q Consensus 269 ~~~~~~~l~~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~~--~~~~~~~----~~~~~~~~~~~~~g~-~~faf~~~~ 341 (611)
+.....++....-.+........+....+..+++..+..... ..+..+. +.......+...++. +.+.-..-.
T Consensus 146 ~~~l~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~ 225 (442)
T TIGR00800 146 FWALVLVFLFFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWAT 225 (442)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHc
Confidence 223333333333344444444444444333333333222211 1111111 111122334444443 223334457
Q ss_pred chhcchhhccCCcccCccchhhhhHHHHHHHHHHHHHhHhhhh----cCcc
Q psy15185 342 VVIALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVK----YGSA 388 (611)
Q Consensus 342 ~i~~i~~~mk~p~~~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~----fG~~ 388 (611)
+.++..+.+|+|++-.+ ....++.........+|+.+-.. +|+.
T Consensus 226 ~~~DysRy~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 226 NAPDFTRFGKSKKTAIW---GQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred CchhhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88899999998876555 56667777777777777777665 6654
No 58
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0019 Score=69.63 Aligned_cols=232 Identities=13% Similarity=0.166 Sum_probs=142.3
Q ss_pred cCCCCCHHHHHHHHHhhhhccccc-hhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGIL-AMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 205 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 205 (611)
.+++....+-.+.-+...||+|.+ +.-.+.+++|-...++-.+++|.+.+.++.-|.|.+...+. . -+|...+.
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-s----GsF~~ya~ 116 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-S----GSFSTYAT 116 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C----Cchhhhhh
Confidence 446777788888889999999986 78899999999988899999999999999999998877652 1 25777666
Q ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhh--cccccc
Q psy15185 206 VALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGIN--SIRNLK 283 (611)
Q Consensus 206 ~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~--~~~~l~ 283 (611)
+.. ++.....+.-.-.++-.-++..-++..+..++...+. ..+...|..++.+.++.+- -.|...
T Consensus 117 rfv----------dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~---~v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 117 RFV----------DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD---TVPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred hhc----------CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC---CCChHHHHHHHHHHHHHHHHhcccccc
Confidence 655 3333444444333333333344444444444433321 2355566655544443333 345544
Q ss_pred hhh-hHHHHHHHHHHHHHHhhhheecccCCC--C-------CCCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCC
Q psy15185 284 LLA-PFSQLANVITFIGLGITMYYICQALPP--V-------SSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTP 353 (611)
Q Consensus 284 ~l~-~~s~~~~~~i~~~~~~v~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p 353 (611)
+.- |+|.+=++.++..+++.+.......|+ . ++.+....+.++...+-+..|+|.|...+--...|-+||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 433 344444443333222222211111221 1 111223446777777888999999999998889999999
Q ss_pred cc-cCccchhhhhHHHHHHHHHHHHHh
Q psy15185 354 AS-FGGYYGVLNQGMFAIVIMYVIMGF 379 (611)
Q Consensus 354 ~~-~~~~~~v~~~a~~i~~~~Y~~~g~ 379 (611)
+| .+| ++.-.+.=..++|+..-+
T Consensus 264 ~K~iPk---Aik~vfwRIl~FYi~si~ 287 (541)
T COG0833 264 RKSIPK---AIKQVFWRILLFYILSIF 287 (541)
T ss_pred hhhhHH---HHHHHHHHHHHHHHHHHH
Confidence 65 443 777776666667765443
No 59
>KOG1289|consensus
Probab=97.70 E-value=0.0044 Score=66.87 Aligned_cols=173 Identities=8% Similarity=-0.053 Sum_probs=86.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccc--hHHHHHHH--HHHHHHHhhcccccchhhhHHHHH
Q psy15185 217 FAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVM--DVRIVMVL--LLLPLIGINSIRNLKLLAPFSQLA 292 (611)
Q Consensus 217 ~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~--~~~~~~~i--~~~~~~~l~~~~~l~~l~~~s~~~ 292 (611)
.||+...|++.-...+-+.-...+-.--.++.+........+++ .......+ .+..+..+...-.-|.+.+++.++
T Consensus 127 k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~ 206 (550)
T KOG1289|consen 127 KYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVS 206 (550)
T ss_pred chhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34777777777655555544444433444444444443332222 11111111 111111222222335566666666
Q ss_pred HHHHHHHHHhhhheec---ccCCCCC-------CCCCcCCcc----hhhHHHHHHHHhcccccchhcchhhccCCcccCc
Q psy15185 293 NVITFIGLGITMYYIC---QALPPVS-------SRPYFGDPR----NWNLFIGTTLFALEAVGVVIALENNMKTPASFGG 358 (611)
Q Consensus 293 ~~~i~~~~~~v~~~~~---~~~~~~~-------~~~~~~~~~----~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~~~~ 358 (611)
+...++.+++.++... .+.++.+ +.+...+|. .+...+-.-+..+.|-..-..+.+|-||+++.-
T Consensus 207 ~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~a- 285 (550)
T KOG1289|consen 207 VYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAA- 285 (550)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhhc-
Confidence 6665555444443221 1111111 111122232 222333345566677777788999999996543
Q ss_pred cchhhhhHHHHHHHHHHHHHhHhhhhcCccccc
Q psy15185 359 YYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQG 391 (611)
Q Consensus 359 ~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~~~ 391 (611)
|+.+..+..+..++=..+-+.-..+-++|.+.
T Consensus 286 -PrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~ 317 (550)
T KOG1289|consen 286 -PRGIISSIAIGFILGWIIIIGIAYTIPDDLDA 317 (550)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 33777777777777777766666677754443
No 60
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.58 E-value=0.0021 Score=70.85 Aligned_cols=229 Identities=11% Similarity=0.104 Sum_probs=123.3
Q ss_pred Hhhhhccccc-hhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhhhh
Q psy15185 141 LKGSLGTGIL-AMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAA 219 (611)
Q Consensus 141 ~~~~iG~GiL-~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~~G 219 (611)
+..++|+|++ +.+.+..+.|.....+..++.+++...+..-+.|...+.+.. -++-+..++.+ |
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~-----Gg~y~y~~~~l----------g 71 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSA-----GGFYAYASRGL----------G 71 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccc-----cchhhhhhhcc----------C
Confidence 4566777765 556789999987778888888898888888888887765422 24445555555 3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHH--HHhhcccchH-HHHHHHHHHHH--HHhhcccccchhhhH-HHHHH
Q psy15185 220 NASAIIVDMFLIVYQLGICCVYIMFVATNIKPV--TDAYIAVMDV-RIVMVLLLLPL--IGINSIRNLKLLAPF-SQLAN 293 (611)
Q Consensus 220 ~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l--~~~~~~~~~~-~~~~~i~~~~~--~~l~~~~~l~~l~~~-s~~~~ 293 (611)
+.....+.....+...-.........+..+... .......+.. ..+..+..+.+ +-+.-.|...+.... ..+..
T Consensus 72 ~~~Gf~~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 72 PALGFAAGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKL 151 (478)
T ss_pred CcCCceeeHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhh
Confidence 333333333333333333333333333333332 1111100100 01122222222 112222333332222 11222
Q ss_pred HHHHHHHHhhh-h-eecccCCCCC-----C------C------CCcCCcchhhHHHHHHHHhcccccchhcchhhccCCc
Q psy15185 294 VITFIGLGITM-Y-YICQALPPVS-----S------R------PYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPA 354 (611)
Q Consensus 294 ~~i~~~~~~v~-~-~~~~~~~~~~-----~------~------~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~ 354 (611)
+.. ..+++.. . ......+... + . +...++.++...+....++|.|-..+...-+|.|||+
T Consensus 152 ~~l-i~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 152 IAL-IAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hHh-hhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 111 1122211 1 1111111111 0 0 0112367788889999999999999999999999997
Q ss_pred c-cCccchhhhhHHHHHHHHHHHHHhHhhhhcCcc
Q psy15185 355 S-FGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSA 388 (611)
Q Consensus 355 ~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~ 388 (611)
| .+| ....++....++|+......-...+.+
T Consensus 231 k~IPr---a~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 231 KTIPR---ATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhhh---HhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 5 444 888999999999998887766666543
No 61
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.52 E-value=0.0069 Score=67.13 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHhcccccchhcchhhccCCcc-cCccchhhhhHHHHHHHHHHHHHhHh
Q psy15185 325 NWNLFIGTTLFALEAVGVVIALENNMKTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLG 381 (611)
Q Consensus 325 ~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~G 381 (611)
++...+....|+|.|...+....+|+|||+| .+| ++..+...+.++|.+..+..
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~---ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPK---GIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccH---HHHHHHHHHHHHHHHHHHHH
Confidence 3555566788999999999999999999965 554 89999999999999865543
No 62
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.30 E-value=0.1 Score=57.41 Aligned_cols=52 Identities=6% Similarity=0.103 Sum_probs=42.0
Q ss_pred HHHHhcccccchhcchhhccCCcc-cCccchhhhhHHHHHHHHHHHHHhHhhhhcC
Q psy15185 332 TTLFALEAVGVVIALENNMKTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVKYG 386 (611)
Q Consensus 332 ~~~faf~~~~~i~~i~~~mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG 386 (611)
.+.|+|.|-..+....+|+|||+| .+| ++..+..++.++|.+..+.-....+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPr---Ai~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPI---AILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 457899999999999999999965 555 8999999999999887665544444
No 63
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.13 E-value=0.1 Score=57.92 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHHHHhcccccchhcchhhccCCcc-cCccchhhhhHHHHHHHHHHHHHh
Q psy15185 328 LFIGTTLFALEAVGVVIALENNMKTPAS-FGGYYGVLNQGMFAIVIMYVIMGF 379 (611)
Q Consensus 328 ~~~g~~~faf~~~~~i~~i~~~mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~ 379 (611)
..+..+.|+|.|-..+....+|+|||+| ++| ++..+..++.++|.+..+
T Consensus 198 ~~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr---Ai~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 198 VVFVAFIGAYMGVEASASHINELENPGRDYPL---AMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHccCCcccccH---HHHHHHHHHHHHHHHHHH
Confidence 3444568899999999999999999965 555 888888888888876443
No 64
>PRK12488 acetate permease; Provisional
Probab=97.08 E-value=0.78 Score=51.51 Aligned_cols=188 Identities=8% Similarity=0.049 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhhhHHHHhhhcccccccceecccCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhhhccc-cchh
Q psy15185 74 IVDMFLIVYQLGICCVYIMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHKHRVLEHATTNNETLIHLLKGSLGTG-ILAM 152 (611)
Q Consensus 74 ~v~~~~~~~~~g~~~vy~~~ia~nl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~G-iL~L 152 (611)
..+..++..++..+.....+.++.-|+..|++ .-.++.+++...+.+..+.++++ .++.
T Consensus 32 ~~~i~i~~~y~~~~l~ig~~~~r~~~s~~df~--------------------laGR~l~~~~~~~si~at~~Sa~sflG~ 91 (549)
T PRK12488 32 WTAIGMFMVFVLFTLGITRWAARRTRSASDFY--------------------TAGGGLTGMQNGLAIAGDMISAASFLGI 91 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCChHHHe--------------------eeCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666555433322222 11246688888888888877666 4789
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHH
Q psy15185 153 PNAFVNSGLVIGTVGTILIGILCTYC-LHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLI 231 (611)
Q Consensus 153 P~af~~~G~~~giill~~~~~ls~~t-~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~ 231 (611)
|-...+.|+- +....+ ...+.+.- ..++.+-.++ ....|.+|.-++-| | +|..|.+..+..+
T Consensus 92 ~G~~y~~G~~-~~~~~~-g~~~g~~~~~~~~a~~lr~------~g~~T~~d~l~~Rf--~-------s~~~r~laai~~i 154 (549)
T PRK12488 92 SAMMFMNGYD-GLLYAL-GVLAGWPIILFLIAERLRN------LGKYTFADVVSYRL--A-------QGPVRLTAAFGTL 154 (549)
T ss_pred HHHHHHhChh-HHHHHH-HHHHHHHHHHHHHHHHHHH------CCCcchHHHHHHHc--C-------CCcchHHHHHHHH
Confidence 9877888874 222211 11111111 1222222221 12358888776654 1 3668888888887
Q ss_pred HHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHhh
Q psy15185 232 VYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVITFIGLGIT 303 (611)
Q Consensus 232 ~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~i~~~~~~v 303 (611)
+..+.-..+.+...+..++.++. ++...-+++..+....-....-++...+...+-.+.++.+.+++
T Consensus 155 ~~~~~yl~~q~~g~g~il~~l~g-----i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~~~i~~ 221 (549)
T PRK12488 155 TVVLMYLVAQMVGAGKLIELLFG-----ISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLLSGTSFM 221 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653 34443344444445555667788888888887766665554433
No 65
>PRK11375 allantoin permease; Provisional
Probab=97.02 E-value=0.18 Score=55.67 Aligned_cols=49 Identities=4% Similarity=-0.016 Sum_probs=35.0
Q ss_pred CChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHH-HHhhhhhHHHHHHHHhhHHHHHHhh
Q psy15185 198 LNYPDSMRVALQQGPPCLRFAANASAIIVDMFLI-VYQLGICCVYIMFVATNIKPVTDAY 256 (611)
Q Consensus 198 ~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~-~~~~g~~i~Y~i~~~~~l~~l~~~~ 256 (611)
.++.-+.|..| |.+|..+..+... +..+|=........++.+..++..+
T Consensus 89 l~~~v~sR~sF----------G~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i 138 (484)
T PRK11375 89 VPFAMILRASY----------GVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKI 138 (484)
T ss_pred CChhHhHHHHH----------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888999988 7777777777764 4566666666667777777666554
No 66
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.01 E-value=0.32 Score=49.58 Aligned_cols=101 Identities=16% Similarity=0.266 Sum_probs=76.2
Q ss_pred HHHHHhhhhccccchhHH---HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCc
Q psy15185 137 LIHLLKGSLGTGILAMPN---AFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPP 213 (611)
Q Consensus 137 ~~~l~~~~iG~GiL~LP~---af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~ 213 (611)
.+-.+.+++|+|.=+==- =|..-|+. |..-.++++.+-..++..+.+..++.+++ +|+|.-++.+
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~------~y~~~~~~v~----- 76 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNAT------SYREILKYVS----- 76 (349)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhccc------chHHHHHHHh-----
Confidence 445566889998654222 23334543 66666777777777888888877766544 8999999988
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHH
Q psy15185 214 CLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTD 254 (611)
Q Consensus 214 ~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~ 254 (611)
||+...+.|+.+++.+++.++.-+.-.+..+.+.++
T Consensus 77 -----~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~ 112 (349)
T COG3949 77 -----GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG 112 (349)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC
Confidence 888899999999999999999988888878877664
No 67
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.99 E-value=0.046 Score=56.66 Aligned_cols=219 Identities=12% Similarity=0.104 Sum_probs=130.2
Q ss_pred HHHhhhcccccccceecccCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHH
Q psy15185 89 VYIMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHKHRVLEHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGT 168 (611)
Q Consensus 89 vy~~~ia~nl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill 168 (611)
.|.-|+++.+.+..|+. .+...+.+|..|+- +++.+..+-|=..++-|+|.+.=|-.-.+-||+++.+.+
T Consensus 20 ~Yg~~l~~~~~~~d~~~-~TPA~~~~DGvDYv---------P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI 89 (376)
T PF02554_consen 20 FYGKFLEKKFGKLDDSR-PTPAHTMNDGVDYV---------PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWI 89 (376)
T ss_pred HHHHHHHheeccCCCCC-CCCeeECCCCCCCC---------CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHH
Confidence 56677777776542222 22222223333333 345567788888999999999999888999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q psy15185 169 ILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATN 248 (611)
Q Consensus 169 ~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~ 248 (611)
++=+++.---..+..-... -|+ +-.|.+|++++.+ ||.++.+..+...+.++-...++....++.
T Consensus 90 ~~G~if~GaVHD~~sl~~S---vR~--~G~Si~~i~~~~l----------G~~~~~lf~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 90 VFGCIFAGAVHDYGSLMAS---VRH--KGKSIGEIAGKYL----------GKRAKKLFLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred HHccHHHHHHHHHHHHhhh---hcC--CCccHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554433333332211 122 2348999999988 999999999999999998888888888777
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHhhhheecccCCCCCCCCCcCCcchhhH
Q psy15185 249 IKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVITFIGLGITMYYICQALPPVSSRPYFGDPRNWNL 328 (611)
Q Consensus 249 l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (611)
+.+.-.. ....+..+...+++-...-|.=..+...+.++++.++.++..-.. .|-.. .+ ..
T Consensus 155 ~~~~p~~-----~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll~~~v~~G~~-----~p~~~-----~~----~~ 215 (376)
T PF02554_consen 155 FVNSPWA-----ATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLLLLAVWLGMY-----FPISL-----LS----VT 215 (376)
T ss_pred hccChhH-----HHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHHHHHHHhhhh-----ccccc-----Cc----HH
Confidence 7553221 122223333333333333333334556666666655444332221 11100 00 11
Q ss_pred HHHHHHHhcccccchhcchhhcc
Q psy15185 329 FIGTTLFALEAVGVVIALENNMK 351 (611)
Q Consensus 329 ~~g~~~faf~~~~~i~~i~~~mk 351 (611)
..-.+.+.|.....+.|+-.=+.
T Consensus 216 ~W~~ii~~Y~~iAs~lPVw~Llq 238 (376)
T PF02554_consen 216 TWIIIIFIYYFIASVLPVWKLLQ 238 (376)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhC
Confidence 22345666766777777766554
No 68
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.87 E-value=0.48 Score=50.70 Aligned_cols=176 Identities=9% Similarity=0.078 Sum_probs=100.5
Q ss_pred CChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhh
Q psy15185 198 LNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGIN 277 (611)
Q Consensus 198 ~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~ 277 (611)
.++.-+.|..| |++|..+..+...+..+|--.......++.+..+.+...+..+......+..+...+..
T Consensus 58 l~~~v~sR~~F----------G~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 127 (386)
T TIGR02358 58 LSAMGSLKLSL----------GSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWL 127 (386)
T ss_pred cCHHHHHHHHH----------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 47888999988 88899999999999999988888889999999988764332122222222222222222
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhhhheecccCCCCCCCCCcCCcchhhHHHHHHH-HhcccccchhcchhhccCCccc
Q psy15185 278 SIRNLKLLAPFSQLANVITFIGLGITMYYICQALPPVSSRPYFGDPRNWNLFIGTTL-FALEAVGVVIALENNMKTPASF 356 (611)
Q Consensus 278 ~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-faf~~~~~i~~i~~~mk~p~~~ 356 (611)
....+.+.++..++........+...+....+....+......+ .++...++... +.-......++..+..|+|+|.
T Consensus 128 -~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~ 205 (386)
T TIGR02358 128 -LSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNRAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHV 205 (386)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCCCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcce
Confidence 23345555556555555554444333222211110000001111 22222222211 1112334578888888887765
Q ss_pred CccchhhhhHHHHHHHHHHHHHhHhhhhcCcc
Q psy15185 357 GGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSA 388 (611)
Q Consensus 357 ~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~ 388 (611)
.. ....+..+...+-..+|...-.+.++.
T Consensus 206 ~~---~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 206 FL---GTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred eh---HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 54 566677778888888888777766653
No 69
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.86 E-value=0.073 Score=57.32 Aligned_cols=155 Identities=11% Similarity=0.109 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHhhhhcc-ccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGT-GILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
++.+++...+.+..+.+|+ ..++.|-...+.|+. +....+............+.+-.++ .+..|.+|.-++-
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~------~~~~T~~e~~~~R 78 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRR------SGAVTIPEYLEKR 78 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHH------TT--SHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhcc------cchhhhhhhhhhh
Confidence 4667888888888888877 467889888888985 3333333333333344444443332 2245888887775
Q ss_pred HhcCCchhhhhhhhH--HHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 208 LQQGPPCLRFAANAS--AIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g--~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
+ |+.. +.+..+..++..+......+...+..++.+.. ++.....++..+....-....-++..
T Consensus 79 y----------g~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-----i~~~~~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 79 Y----------GSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-----IPYNTAILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp T-----------HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHTTCTT-----
T ss_pred c----------CCchhhhhhcccccchhhhhhhhccccccccchhhccc-----hhhhHHHHHHHHHHHHhhhhhhHhhh
Confidence 5 7766 66666666777777777777777777776653 44455555555555667778888888
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q psy15185 286 APFSQLANVITFIGLGITMY 305 (611)
Q Consensus 286 ~~~s~~~~~~i~~~~~~v~~ 305 (611)
.+...+-.+.++.+.+++.+
T Consensus 144 ~~td~iQ~~i~~~~~~~~~~ 163 (406)
T PF00474_consen 144 AWTDFIQGVIMIIGAIVVLI 163 (406)
T ss_dssp -SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 88887776666555444443
No 70
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.68 E-value=1.4 Score=48.60 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHhhhhcc-ccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGT-GILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
++.+++...+.+..+.+|+ ..++.|-...+.|+.. .............+...+..-..+..+| .+..|.+|.-++-
T Consensus 41 r~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~~T~~e~l~~R 117 (483)
T PRK09442 41 RSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGW-VLLAMIQVPTVWLSLGILGKKFAILARK--YNAVTLNDMLRAR 117 (483)
T ss_pred CCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHHH
Confidence 4667788888887777665 5678887666777631 1111110111111222222222112222 2356899988876
Q ss_pred HhcCCchhhhhh-hhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 208 LQQGPPCLRFAA-NASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 208 ~~~G~~~~~~~G-~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
+ | +..+.+..+...+..++...+.+...+..++.+.+ ++...-+++..+....-..+.-++...
T Consensus 118 y----------g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-----i~~~~~iii~~~iv~iYt~~GGl~av~ 182 (483)
T PRK09442 118 Y----------QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-----ISYETGLLIFGITVALYTAFGGFRAVV 182 (483)
T ss_pred h----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 5 4 45677777767777777677777777777777653 344444444455556667778888888
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy15185 287 PFSQLANVITFIGLGIT 303 (611)
Q Consensus 287 ~~s~~~~~~i~~~~~~v 303 (611)
+...+-.+.++.+.+++
T Consensus 183 ~TD~iQ~~i~~~~~~vi 199 (483)
T PRK09442 183 LTDALQGIVMLVGTVIL 199 (483)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88877766655554443
No 71
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.65 E-value=1.5 Score=48.60 Aligned_cols=187 Identities=11% Similarity=0.029 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhhHHHHhhhcccccccceecccCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhhhcccc-chhHH
Q psy15185 76 DMFLIVYQLGICCVYIMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHKHRVLEHATTNNETLIHLLKGSLGTGI-LAMPN 154 (611)
Q Consensus 76 ~~~~~~~~~g~~~vy~~~ia~nl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~Gi-L~LP~ 154 (611)
+...++-++.....-..+.++.-|+..|+. .-.++.+++...+.+..+.+++.. ++.|-
T Consensus 7 ~~~~~~~y~~~~l~iG~~~~r~~~s~~dy~--------------------lagr~l~~~~~~~s~~At~~Sa~t~iG~~g 66 (502)
T PRK15419 7 MLVTFCVYIFGMILIGFIAWRSTKNFDDYI--------------------LGGRSLGPFVTALSAGASDMSGWLLMGLPG 66 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhHhe--------------------eeCCCccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344555666666666666666533322222 112466788888887777766655 57898
Q ss_pred HHhhcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhhhhh---hHHHHHHHHH
Q psy15185 155 AFVNSGLVIGTVGTILIGILCT-YCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAAN---ASAIIVDMFL 230 (611)
Q Consensus 155 af~~~G~~~giill~~~~~ls~-~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~~G~---~g~~~v~i~~ 230 (611)
...+.|+.. ....+...+.. ....++..-.+ ...+.+.+..|.+|.-++-+ |+ ..+.+..+..
T Consensus 67 ~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~l~-~~~~~~~~~~T~~e~l~~Ry----------~~~~~~~~~~~~i~~ 133 (502)
T PRK15419 67 AVFLSGISE--SWIAIGLTLGAWINWKLVAGRLR-VHTEYNNNALTLPDYFTGRF----------EDKSRILRIISALVI 133 (502)
T ss_pred HHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCceeHHHHHHHHh----------CCCchhHHHHHHHHH
Confidence 888888743 11111111221 11122221111 11111223457777776644 53 4455555555
Q ss_pred HHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q psy15185 231 IVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVITFIGL 300 (611)
Q Consensus 231 ~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~i~~~~ 300 (611)
.+..+.-+.+.+...+..++.+++ ++...-.++..+....-....-++...+.-.+-.+.++.+.
T Consensus 134 ~~~~~~~~~~ql~~~~~~l~~~~g-----i~~~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ~~imi~g~ 198 (502)
T PRK15419 134 LLFFTIYCASGIVAGARLFESTFG-----MSYETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFAL 198 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 555555455555555666655543 34444444444555566677788888888777766555443
No 72
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.38 Score=51.72 Aligned_cols=165 Identities=9% Similarity=0.020 Sum_probs=96.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHH
Q psy15185 218 AANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVITF 297 (611)
Q Consensus 218 ~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~i~ 297 (611)
+|.+|.++..+.+.+.++|-...-.+..++..... ...+..++.++..+.....+.. -.|.+..++..+.....
T Consensus 91 fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-----~~~~~~~~ili~g~l~~l~~if-G~r~l~~l~~~a~~~~~ 164 (442)
T COG1457 91 FGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-----TGLPVWAGILIIGVLMTLVTIF-GYRALHKLERIAVPLLL 164 (442)
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-----CCCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999888888862211 1334445544444333333333 34444455555555555
Q ss_pred HHHHhhhheeccc--CCCCCCCCCcCCcchhhHHHHHH-HHhcccccchhcchhhccCCcccCccchhhhhHHHHHHHHH
Q psy15185 298 IGLGITMYYICQA--LPPVSSRPYFGDPRNWNLFIGTT-LFALEAVGVVIALENNMKTPASFGGYYGVLNQGMFAIVIMY 374 (611)
Q Consensus 298 ~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~-~faf~~~~~i~~i~~~mk~p~~~~~~~~v~~~a~~i~~~~Y 374 (611)
..+....+..... .++....+.+.++.++..+++.. .+.-..-+...+..+-+|+|+. ++.......+......+-
T Consensus 165 ~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~-~~~~~~~~~G~~l~~~~~ 243 (442)
T COG1457 165 LLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTP-SKAFLAAVLGFFLGTSFM 243 (442)
T ss_pred HHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCch-HHHHHHHHHHHHHHHHHH
Confidence 4444444443332 12222233345566666666542 2223334666788888888874 231114445555666677
Q ss_pred HHHHhHhhhhcCccc
Q psy15185 375 VIMGFLGYVKYGSAA 389 (611)
Q Consensus 375 ~~~g~~GY~~fG~~~ 389 (611)
.++|...-.+-|+..
T Consensus 244 ~ilGa~~a~a~g~~~ 258 (442)
T COG1457 244 MILGAALAAAAGNAD 258 (442)
T ss_pred HHHHHHHHHhcCCCc
Confidence 777777777777655
No 73
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.42 E-value=2.3 Score=47.82 Aligned_cols=149 Identities=10% Similarity=0.064 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHhhhhc-cccchhHHHHhhcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLG-TGILAMPNAFVNSGLVIGTVGTILIGILCT-YCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~ls~-~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
++.+++...+.+..+.++ ...++.|-...+.|+- +....+. ..+.. ....++.+-.++ . ...|.+|.-++
T Consensus 67 r~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr----~--g~~T~~d~l~~ 138 (549)
T TIGR02711 67 GNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRN----L--GRYTFADVASY 138 (549)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHH----c--CCccHHHHHHH
Confidence 355677767777766555 5678999877778863 3222211 11111 122233332222 1 23588887766
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
-| + +|..|.+..+..++.++.-....+...+..++.+++ ++...-+++..+....-....-++...
T Consensus 139 Rf--~-------s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-----i~~~~~iii~~~i~~~Yt~~GGm~av~ 204 (549)
T TIGR02711 139 RL--K-------QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-----LNYHVAVVLVGILMVMYVLFGGMLATT 204 (549)
T ss_pred Hc--C-------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44 1 356787777777777666666777777777766653 333333334444444455566777777
Q ss_pred hHHHHHHHHHHHH
Q psy15185 287 PFSQLANVITFIG 299 (611)
Q Consensus 287 ~~s~~~~~~i~~~ 299 (611)
+...+=.+.++.+
T Consensus 205 ~td~iQ~~im~~g 217 (549)
T TIGR02711 205 WVQIIKAVLLLFG 217 (549)
T ss_pred HHHHHHHHHHHHH
Confidence 7776655555444
No 74
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.40 E-value=2.1 Score=47.16 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHhhhhcccc-chhHHHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTGI-LAMPNAFVNSGLVIGTVGTILIG-ILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~-~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
++.+++.....+..+.+|++. ++.|-...+.|+... .....+ .....+...+..-..+..+| .+..|.+|.-++
T Consensus 40 r~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~T~~e~l~~ 115 (471)
T TIGR02119 40 RSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWV--LLAMIQVPTGYFVLGVLGKKFAIISRK--YNAITINDVLKA 115 (471)
T ss_pred CcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHH
Confidence 567888888899888887654 578877777786321 111111 11112222222211111222 234588888877
Q ss_pred HHhcCCchhhhhh-hhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 207 ALQQGPPCLRFAA-NASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 207 ~~~~G~~~~~~~G-~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
-+ | |..+.+..+..++.+++...+.+...+..++.+++ ++...-+++..+....-....-++..
T Consensus 116 Ry----------g~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-----i~~~~~iii~~~iv~iYt~~GG~~av 180 (471)
T TIGR02119 116 RY----------NNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-----LSYLTALFIFSSSVLIYTTFGGFRAV 180 (471)
T ss_pred Hc----------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55 6 45678888888888888877777777777777663 34444444444445566677888888
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q psy15185 286 APFSQLANVITFIGLGITM 304 (611)
Q Consensus 286 ~~~s~~~~~~i~~~~~~v~ 304 (611)
.+...+-.+.++...+++.
T Consensus 181 ~~td~iQ~~v~~~~~~~~~ 199 (471)
T TIGR02119 181 ALTDAIQGIVMFTGTTILL 199 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888777666555544433
No 75
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.35 E-value=0.15 Score=54.65 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHhhhhccc-cchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-----hH
Q psy15185 129 HATTNNETLIHLLKGSLGTG-ILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNY-----PD 202 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy-----~~ 202 (611)
++.|.+++.+..+.+.+|.| ++++|-|.+..| -.++..+-+.+++..-+.+.-+....+++++ +++.+| -+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~--~~~g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER--DADGVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee--CCCCCEecChHHH
Confidence 35789999999999999998 999999987777 5677777777777666666655555555432 222235 44
Q ss_pred HHHHHHhcCCchhhhhhhhHHHHHHHH
Q psy15185 203 SMRVALQQGPPCLRFAANASAIIVDMF 229 (611)
Q Consensus 203 l~~~~~~~G~~~~~~~G~~g~~~v~i~ 229 (611)
+.+... |||...+..++
T Consensus 122 i~~gl~----------~k~lg~lfa~~ 138 (425)
T TIGR00835 122 IKKGLG----------MRWLAVLFAVF 138 (425)
T ss_pred HHHHhC----------ccHHHHHHHHH
Confidence 444332 67766666665
No 76
>PRK09395 actP acetate permease; Provisional
Probab=96.12 E-value=3.2 Score=46.63 Aligned_cols=185 Identities=10% Similarity=0.062 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhhHHHHhhhcccccccceecccCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhhhcc-ccchhH
Q psy15185 75 VDMFLIVYQLGICCVYIMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHKHRVLEHATTNNETLIHLLKGSLGT-GILAMP 153 (611)
Q Consensus 75 v~~~~~~~~~g~~~vy~~~ia~nl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~LP 153 (611)
.+..+++-++........+.++.-|+..|++. -.++.+++...+.+..+.+|+ ..++.|
T Consensus 35 ~~~~i~~~y~~~~l~iG~~~~r~~~s~~df~~--------------------agr~l~~~~~~~si~At~~Sa~tfiG~~ 94 (551)
T PRK09395 35 QAIIMFLIFVVFTLGITYWAAKRTRSASDFYT--------------------AGGGITGFQNGLAIAGDYMSAASFLGIS 94 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCHHHHhh--------------------cCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555556665554333222221 123567777777777776664 457888
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhhhh-hhHHHHHHHHHHH
Q psy15185 154 NAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAA-NASAIIVDMFLIV 232 (611)
Q Consensus 154 ~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~~G-~~g~~~v~i~~~~ 232 (611)
-...+.|+.. ....+...+-......++.+ +.+ +....|++|.-++-| | |..|.+..+..++
T Consensus 95 g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~---~~r---~~g~~T~~d~l~~Ry----------gs~~~r~l~av~~iv 157 (551)
T PRK09395 95 ALVFTSGYDG-LIYSIGFLVGWPIILFLIAE---RLR---NLGKYTFADVASYRL----------KQGPIRTLSACGSLV 157 (551)
T ss_pred HHHHHhCHHH-HHHHHHHHHHHHHHHHHHHH---HHh---hCCCccHHHHHHHHc----------CCchHHHHHHHHHHH
Confidence 7777888742 22211111111111222222 221 122468888876644 5 5578787777666
Q ss_pred HhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q psy15185 233 YQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVITFIGLG 301 (611)
Q Consensus 233 ~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~i~~~~~ 301 (611)
..+....+.+...+..++.+++ ++...-.++..+....-....-++...+.-.+-.+.++.+.+
T Consensus 158 ~~~~yl~~q~~g~g~il~~~~g-----i~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~iim~~g~i 221 (551)
T PRK09395 158 VVALYLIAQMVGAGKLIQLLFG-----LNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLSGAT 221 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666542 344444444444555556677777777777766555544433
No 77
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.11 E-value=0.11 Score=56.30 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=91.4
Q ss_pred HHHHhhhcccccccceecccCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHH
Q psy15185 88 CVYIMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHKHRVLEHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVG 167 (611)
Q Consensus 88 ~vy~~~ia~nl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giil 167 (611)
-.|.-|++|..-+..++. .+..+..+|..|+-| ++.+..+-|=..++-|+|.+-=|---+|.||.+|.+.
T Consensus 19 r~Yg~fi~eKV~~~dp~R-~TPA~~~nDG~DYVP---------tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LW 88 (575)
T COG1966 19 FFYGKFIAEKVFRLDPNR-PTPAHRKNDGVDYVP---------TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLW 88 (575)
T ss_pred HHHHHHHHHheeecCCCC-CCCceeccCCccccc---------CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHH
Confidence 468888888777653333 333333444455444 3445677788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHh
Q psy15185 168 TILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVAT 247 (611)
Q Consensus 168 l~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~ 247 (611)
+++=+++.---...++-... .|++-.|.+|++++.+ |+..+.+..+...+..+-....+......
T Consensus 89 Il~G~VfaGaVhD~~~L~~S-----vR~~G~Si~~ia~~~l----------G~~a~~~~~~~~l~iliiv~Avfa~vv~~ 153 (575)
T COG1966 89 ILLGCVFAGAVHDYFSLMLS-----VRHGGKSIGEIAGKYL----------GRTAKVFFLLLALILLILVGAVFAAVIAK 153 (575)
T ss_pred HHHhhhhhhhhhhhhheeee-----eccCCccHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766554322222222111 1223358999999988 88888888887777666555555555555
Q ss_pred hHHH
Q psy15185 248 NIKP 251 (611)
Q Consensus 248 ~l~~ 251 (611)
.+.+
T Consensus 154 ~l~~ 157 (575)
T COG1966 154 LLAN 157 (575)
T ss_pred HHhh
Confidence 4443
No 78
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=96.03 E-value=0.55 Score=50.02 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=72.4
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccC-CCCchHHHHHHhhcCChhhhhhhhhhhHHHHHHH
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVP-ILNYPDSMRVALQQGPPCLRFAANASAIIVDMFL 79 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~~~~~~v~~~~ 79 (611)
+|.++.+.|...+.+.+++.++++.+....+.+.+.+ .| ..++.|+.++++. ++++.++++..
T Consensus 18 lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~------~p~~~~~~~~~~~~~G----------~~~g~~~~~~~ 81 (381)
T TIGR00837 18 LPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLT------YPGGASFNTIAKDLLG----------KTGNIIAGLSL 81 (381)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCCHHHHHHHHhC----------HHHHHHHHHHH
Confidence 5888888998899999999999999988887777652 34 3577778777776 88888999999
Q ss_pred HHHHHhhhHHHHhhhccccccccee
Q psy15185 80 IVYQLGICCVYIMFVATNIKPVSIY 104 (611)
Q Consensus 80 ~~~~~g~~~vy~~~ia~nl~~v~~~ 104 (611)
....++.+..|....++.+++..+.
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~ 106 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGE 106 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHH
Confidence 9999999999999988888877654
No 79
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.03 E-value=3.3 Score=45.87 Aligned_cols=152 Identities=12% Similarity=0.074 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHhhhhc-cccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHH
Q psy15185 130 ATTNNETLIHLLKGSLG-TGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVAL 208 (611)
Q Consensus 130 ~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~ 208 (611)
+.+.+-.......+.++ .-.+++|-...+.|+...-+..... ........++..-..+..+ ++...|.+|.-+.-|
T Consensus 39 ~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~-~~~~~~~~~~~~rl~~~~~--~~~~~T~~d~l~~Rf 115 (493)
T COG0591 39 SLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLL-IGAFLLWLLFAPRLRRLAK--ARGATTIPDFLEARF 115 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc--ccCCccHHHHHHHHc
Confidence 34445556666666666 7889999999999975433333221 2333333333333333331 233458888877654
Q ss_pred hcCCchhhhhh-hhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhh
Q psy15185 209 QQGPPCLRFAA-NASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAP 287 (611)
Q Consensus 209 ~~G~~~~~~~G-~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~ 287 (611)
| ++.|.+..+..++..++-+...+...+..++.... .+...-..+....+..-..+.-++...+
T Consensus 116 ----------~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-----i~~~~~~~~~~~~v~~Yt~~gG~~av~~ 180 (493)
T COG0591 116 ----------GSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-----ISYVTGILIGALIVALYTFLGGLRAVVW 180 (493)
T ss_pred ----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----CCHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 7 89999999999999999999999999998866654 2223223333344444455666777777
Q ss_pred HHHHHHHHHHHH
Q psy15185 288 FSQLANVITFIG 299 (611)
Q Consensus 288 ~s~~~~~~i~~~ 299 (611)
...+=-..+..+
T Consensus 181 Td~iqg~im~i~ 192 (493)
T COG0591 181 TDFIQGLIMLIA 192 (493)
T ss_pred HHHHHHHHHHHH
Confidence 766555544444
No 80
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=95.92 E-value=3.1 Score=44.75 Aligned_cols=151 Identities=16% Similarity=0.110 Sum_probs=94.7
Q ss_pred CCCCHHHHHHHHHhhhhcc-ccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGT-GILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
++.+++...+.+..+.+|+ ..++.|-...+.|+. +....+...........+..+..+ +.+..|.+|.-++-
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~T~~e~l~~R 75 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFI------NNGAYTMPEYLEKR 75 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH------HcCCCchhHHHHHH
Confidence 4567777777777766665 456888877778863 222222222222223333333322 22356888888775
Q ss_pred HhcCCchhhhhhh-hHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 208 LQQGPPCLRFAAN-ASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 208 ~~~G~~~~~~~G~-~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
+ |+ ..+.+..+..++..+....+.+...+..++.+.+ ++...-.++..+....-....-++...
T Consensus 76 y----------g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-----i~~~~~~ii~~~i~~~Yt~~GG~~av~ 140 (407)
T TIGR00813 76 F----------GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-----LDLYLSLLLLGAITILYTVFGGLKAVV 140 (407)
T ss_pred h----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----chHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 5 65 6777777888888888888888888888877763 344444444444455566678888888
Q ss_pred hHHHHHHHHHHHHHH
Q psy15185 287 PFSQLANVITFIGLG 301 (611)
Q Consensus 287 ~~s~~~~~~i~~~~~ 301 (611)
+...+-.+.++.+.+
T Consensus 141 ~Td~iQ~~i~~~~~i 155 (407)
T TIGR00813 141 WTDTIQAVIMILGTF 155 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777666555433
No 81
>PRK15015 carbon starvation protein A; Provisional
Probab=95.51 E-value=0.58 Score=52.06 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhhHHHHhhhcccccccceecccCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhhhccccchhH
Q psy15185 74 IVDMFLIVYQLGICCVYIMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHKHRVLEHATTNNETLIHLLKGSLGTGILAMP 153 (611)
Q Consensus 74 ~v~~~~~~~~~g~~~vy~~~ia~nl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP 153 (611)
++-..+++.-+|. -.|.-|++++.-+..|+. .+..+..+|..|+.|.++. --+-|=..++-|+|.+-=|
T Consensus 37 lv~aa~~~y~iaY-rfYgr~ia~kv~~lD~~r-~TPA~~~~DG~DYvPt~k~---------VLfGHHFasIAGAGPivGP 105 (701)
T PRK15015 37 IVVASVCIYLIAY-RFYGLYIAKNVLAVDPTR-MTPAVRHNDGLDYVPTDKK---------VLFGHHFAAIAGAGPLVGP 105 (701)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhccCCCCC-CCCceECCCCCCcCcCCcc---------chhHHHHHHHhccCccHHH
Confidence 3444444333333 357777887776643333 3333334555555554433 4566778899999999999
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHH
Q psy15185 154 NAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVY 233 (611)
Q Consensus 154 ~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~ 233 (611)
..-.+-||+++.+.+++=+++.---..+..-... .|++-.|..|++++.. |+.++.+..+.+.+.
T Consensus 106 vlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S-----~R~~GrSig~ia~~~i----------G~~~~~lfli~i~~i 170 (701)
T PRK15015 106 VLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVS-----TRRDGRSLGELVKEEM----------GPTAGVIALVACFMI 170 (701)
T ss_pred HHHHHHcchHHHHHHHHcceeechhhhhhheeee-----ecCCCccHHHHHHHHh----------hHHHHHHHHHHHHHH
Confidence 9888999999999987765543322222221111 1222348999999988 899999988888887
Q ss_pred hhhhhHHHHHHHHhhHH
Q psy15185 234 QLGICCVYIMFVATNIK 250 (611)
Q Consensus 234 ~~g~~i~Y~i~~~~~l~ 250 (611)
+.-...++..++.+.+.
T Consensus 171 liiviAvfalvvv~al~ 187 (701)
T PRK15015 171 MVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777776666666553
No 82
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=95.34 E-value=1.7 Score=46.52 Aligned_cols=91 Identities=11% Similarity=0.086 Sum_probs=78.1
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccCCCCchHHHHHHhhcCChhhhhhhhhhhHHHHHHHH
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLI 80 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~v~~~~~ 80 (611)
||.+-..+|.+.+.+.+++...+.+|...++.+...+. ....++.+.+|+-++ +.++.++.+...
T Consensus 24 LP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~-----~~~~~~~~~a~~~lG----------~~g~~~~~~~~~ 88 (394)
T PF03222_consen 24 LPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT-----PEGSSLTSMAEKYLG----------KKGGIVIGISYL 88 (394)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHhC----------hHHHHHHHHHHH
Confidence 69999999999999999999999999888888766522 226788888888776 888999999999
Q ss_pred HHHHhhhHHHHhhhcccccccceecc
Q psy15185 81 VYQLGICCVYIMFVATNIKPVSIYYF 106 (611)
Q Consensus 81 ~~~~g~~~vy~~~ia~nl~~v~~~~~ 106 (611)
+..++.+..|..=+++.+++..+...
T Consensus 89 ~~~y~ll~AYisg~g~~~~~~l~~~~ 114 (394)
T PF03222_consen 89 FLLYALLVAYISGGGSILSSLLGNQL 114 (394)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhc
Confidence 99999999999999999998877653
No 83
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=95.02 E-value=7.2 Score=43.13 Aligned_cols=155 Identities=10% Similarity=0.074 Sum_probs=81.4
Q ss_pred CCCCHHHHHHHHHhhhhccc-cchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTG-ILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
++.+++...+.+..+.+++. .++.|-...+.|+.. ........+.......++.+-.++..+ .+....|-+|.-++-
T Consensus 36 r~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 36 RSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTE-AAHNSITLPDFFENR 113 (487)
T ss_pred CcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcCCccHHHHHHHH
Confidence 45678888888877777654 567887777778743 222222222222333344443232221 022345777777665
Q ss_pred HhcCCchhhhhhh---hHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccch
Q psy15185 208 LQQGPPCLRFAAN---ASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKL 284 (611)
Q Consensus 208 ~~~G~~~~~~~G~---~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~ 284 (611)
+ |+ ..+.+..+...+....-....+...+..++.+++ .+...-.++..+....-....-++.
T Consensus 114 y----------g~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-----i~~~~~iii~~~i~~~Yt~~GGl~a 178 (487)
T TIGR02121 114 F----------NDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-----LDYKTGLLIGALIIVIYTFFGGFLA 178 (487)
T ss_pred h----------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4 53 3444444444444444444555555556555542 3333333344444455556677777
Q ss_pred hhhHHHHHHHHHHHHH
Q psy15185 285 LAPFSQLANVITFIGL 300 (611)
Q Consensus 285 l~~~s~~~~~~i~~~~ 300 (611)
..+.-.+-.+.++...
T Consensus 179 v~~TD~iQ~~i~~~~~ 194 (487)
T TIGR02121 179 VSWTDFVQGLLMFFAL 194 (487)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776655554443
No 84
>PRK11017 codB cytosine permease; Provisional
Probab=94.55 E-value=4.9 Score=43.26 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=84.2
Q ss_pred CChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhh
Q psy15185 198 LNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGIN 277 (611)
Q Consensus 198 ~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~ 277 (611)
.++.-+.|..| |.+|..+..+...+..+|=........++.+..+.+ .+.....++..+...+..
T Consensus 71 ~~~~v~sR~~F----------G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-----~~~~~~~~i~~~l~~~~~ 135 (404)
T PRK11017 71 LSTHLLARFSF----------GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-----LDINLLIVLSGLLMTVTA 135 (404)
T ss_pred cCHHHHHHHHh----------chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHH
Confidence 57899999988 888888888887777777666655566665555432 222223333222222222
Q ss_pred c--ccccchhhhHHHHHHHHHHHHHHhhhheecccCCCCCCC--CCcCCcchhhHHHHH-HHHhcccccchhcchhhccC
Q psy15185 278 S--IRNLKLLAPFSQLANVITFIGLGITMYYICQALPPVSSR--PYFGDPRNWNLFIGT-TLFALEAVGVVIALENNMKT 352 (611)
Q Consensus 278 ~--~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-~~faf~~~~~i~~i~~~mk~ 352 (611)
. .|.++++ ..++........+...+....+....++. ....+...+...+.. +..--..-.+.++..+..|+
T Consensus 136 ~~G~~~i~~~---~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~ 212 (404)
T PRK11017 136 YFGISALTIL---SRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRS 212 (404)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccC
Confidence 2 2444444 43333333333222222222211111100 011112344444443 22223345678888888887
Q ss_pred CcccCccchhhhhHHHHHHHHHHHHHhHhhhhcCc
Q psy15185 353 PASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGS 387 (611)
Q Consensus 353 p~~~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~ 387 (611)
|++-.. ....++.+...+-..+|...-.+.|+
T Consensus 213 ~~~~~~---~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 213 AKIAVL---ATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred ccceee---hhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 754322 34455555666666666655555554
No 85
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=92.14 E-value=0.73 Score=50.20 Aligned_cols=111 Identities=5% Similarity=0.024 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHhhhhccccchhHHHHhh--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 130 ATTNNETLIHLLKGSLGTGILAMPNAFVN--SGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 130 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~--~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
+.+.++-+..-....+....+.+-..... .++.-+++.+++-.++...-.-+... .+.|.+ .++..+.|..
T Consensus 8 ~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~----~G~r~G---l~~~v~sR~~ 80 (440)
T PF02133_consen 8 TWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGI----IGPRTG---LPTMVLSRAS 80 (440)
T ss_dssp -B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTH----HHHCC------HHHHTTTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcc----cccccC---CCchhcchhc
Confidence 44555555444444444444443333322 23333444444433333222222222 333333 3567777776
Q ss_pred HhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhc
Q psy15185 208 LQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYI 257 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~ 257 (611)
| |.+|..+..+...+..+|-...-..+.++.+..+.+...
T Consensus 81 F----------G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~ 120 (440)
T PF02133_consen 81 F----------GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIF 120 (440)
T ss_dssp S-----------TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred c----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 6 888999999998899999888888899999999888653
No 86
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=91.12 E-value=0.58 Score=50.18 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=74.3
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccCCCCchHHHHHHhhcCChhhhhhhhhhhHHHHHHHH
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLI 80 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~v~~~~~ 80 (611)
+|.+-.++|.+.+++.++++..+.+|..|++.+... +..+..++.+.+|+-++ +.++.+..+...
T Consensus 24 LPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~-----~~~~~~~~~~~a~~~LG----------~~g~~i~~~~y~ 88 (403)
T PRK15132 24 MPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQ-----HVPADTGLGTLAKRYLG----------RYGQWLTGFSMM 88 (403)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHhC----------hHHHHHHHHHHH
Confidence 699999999999999999999999999999888532 22344677777777666 888899999999
Q ss_pred HHHHhhhHHHHhhhccccccccee
Q psy15185 81 VYQLGICCVYIMFVATNIKPVSIY 104 (611)
Q Consensus 81 ~~~~g~~~vy~~~ia~nl~~v~~~ 104 (611)
...+..+..|..=.++.+.+..+.
T Consensus 89 fl~y~ll~AYisg~g~il~~~l~~ 112 (403)
T PRK15132 89 FLMYALTAAYISGAGELLASSISD 112 (403)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999988877776654
No 87
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=87.86 E-value=22 Score=37.87 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=42.2
Q ss_pred HHHhhhhccccchhHHH-Hhhcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchh
Q psy15185 139 HLLKGSLGTGILAMPNA-FVNSG--LVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCL 215 (611)
Q Consensus 139 ~l~~~~iG~GiL~LP~a-f~~~G--~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~ 215 (611)
.+..-.+|+|.|-.|-. -+++| |..+.+..++.+...-..... +.. +. .-+|+++.++.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~----~~---gG~~~~l~~~~-------- 64 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALA----LV---GGGYDSLSARI-------- 64 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eee----ec---CCCHHHHHHHh--------
Confidence 45667799999999854 34455 666666666666654433333 111 11 12789988775
Q ss_pred hhhhhhHHHHHHHHHH
Q psy15185 216 RFAANASAIIVDMFLI 231 (611)
Q Consensus 216 ~~~G~~g~~~v~i~~~ 231 (611)
||+...+....+.
T Consensus 65 ---g~~f~~lf~~~~~ 77 (378)
T TIGR00796 65 ---GKVFGILFTVILY 77 (378)
T ss_pred ---ChHHHHHHHHHHH
Confidence 6666655544433
No 88
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=86.96 E-value=58 Score=36.60 Aligned_cols=149 Identities=7% Similarity=-0.010 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHhhhhcc-ccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGT-GILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
++.+++...+.+..+.+++ ..++.|-...+.|+- +................++..-.++ ....|-+|.-++-
T Consensus 32 r~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr------~~~~T~~e~l~~R 104 (552)
T TIGR03648 32 RGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRK------FGKYTVPDFIGDR 104 (552)
T ss_pred CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHH------CCCccHHHHHHHH
Confidence 5778888888888887765 567888777777763 2212111111111223333433332 1234777766554
Q ss_pred HhcCCchhhhhh-hhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 208 LQQGPPCLRFAA-NASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 208 ~~~G~~~~~~~G-~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
| | |..+.+..+..++..+......+...+..++.+.. ++...-+++..+....-....-++...
T Consensus 105 f----------~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-----i~~~~~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 105 Y----------YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-----VDFETGVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred h----------CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4 5 45677777777777776666667767777666653 333333344444445555667777777
Q ss_pred hHHHHHHHHHHHH
Q psy15185 287 PFSQLANVITFIG 299 (611)
Q Consensus 287 ~~s~~~~~~i~~~ 299 (611)
+.-.+-.+.++.+
T Consensus 170 ~TD~iQ~iim~ig 182 (552)
T TIGR03648 170 WTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 7777665554444
No 89
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=86.40 E-value=6.7 Score=42.40 Aligned_cols=88 Identities=10% Similarity=0.113 Sum_probs=69.3
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh---cccCCCCchHHHHHHhhcCChhhhhhhhhhhHHHHH
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKK---KRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDM 77 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~v~~ 77 (611)
||-+-...|+|..++++++......| +++.+++. .+.+..++.|.+|+-++ +.++.+..+
T Consensus 40 LPI~~g~~Gf~p~lillll~~p~m~~-------s~l~L~e~~L~~~~~~~~i~~v~~~~lG----------~~g~~i~~i 102 (443)
T PRK13629 40 FPIRAGFGGLIPILLMLVLAYPIAFY-------CHRALARLCLSGSNPSGNITETVEEHFG----------KTGGVVITF 102 (443)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHccCCCCCCHHHHHHHHcC----------hhHHHHHHH
Confidence 58888899999999999888888877 43444333 23456789998888877 888899999
Q ss_pred HHHHHHHhhhHHHHhhhcccccccceec
Q psy15185 78 FLIVYQLGICCVYIMFVATNIKPVSIYY 105 (611)
Q Consensus 78 ~~~~~~~g~~~vy~~~ia~nl~~v~~~~ 105 (611)
.-+..-+..+.+|..-+.+.+.+...++
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~~q 130 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWENQ 130 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988888777654444
No 90
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=85.39 E-value=58 Score=35.10 Aligned_cols=36 Identities=6% Similarity=-0.025 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHH
Q psy15185 218 AANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVT 253 (611)
Q Consensus 218 ~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~ 253 (611)
|+|+..++.-+...+....+.++-.+..+--++-++
T Consensus 87 y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 87 YLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 488888888888888888888888888877777665
No 91
>PRK00701 manganese transport protein MntH; Reviewed
Probab=83.52 E-value=73 Score=34.71 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=27.3
Q ss_pred ChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHH
Q psy15185 199 NYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPV 252 (611)
Q Consensus 199 sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l 252 (611)
+..|+.++-+ ||+..++..+...+.+.+..++-++-.+.-++.+
T Consensus 95 ~l~~~ir~~~----------~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 95 DLAQACRDRY----------PRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CHHHHHHHHC----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666654 7777777666666666666666665555555443
No 92
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=83.43 E-value=70 Score=34.46 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHhhhhcccc-chhHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTGI-LAMPNAFVNSGLVIGTVGTILIGILCTYCLH 180 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~~ls~~t~~ 180 (611)
++.|.+|++..-+.+.+|+|= .+..-|..-.|- .++..+-+.+++..-+-+
T Consensus 17 g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~ 68 (416)
T PF01235_consen 17 GGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKY 68 (416)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHH
Confidence 467999999999999999994 477888876664 577777777766544443
No 93
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=79.76 E-value=6.5 Score=42.16 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=66.5
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccCCCCchHHHHHHhhcCChhhhhhhhhhhHHHHHHHH
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLI 80 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~v~~~~~ 80 (611)
+|.+-++.||+..+ ...+++....|..|.+..- ..++ .+.|..++.|+.++.++ +++..++.+.-+
T Consensus 24 LP~~ag~~G~i~~l-i~~l~~~pl~~~~~~ll~~-~~l~--~~~p~~~i~~~~~~~fG----------k~~G~ii~~lY~ 89 (397)
T TIGR00814 24 LPIQAGLGGLWVLV-LMAIIAYPLTYFGHRALAR-FLLS--SKNPCEDITEVVEEHFG----------KNWGILITLLYF 89 (397)
T ss_pred HHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHH-HHhc--CCCCCCCHHHHHHHHcC----------HHHHHHHHHHHH
Confidence 57777788855544 4455555666655554321 1232 24478899999999888 888899999999
Q ss_pred HHHHhhhHHHHhhhcccccccceec
Q psy15185 81 VYQLGICCVYIMFVATNIKPVSIYY 105 (611)
Q Consensus 81 ~~~~g~~~vy~~~ia~nl~~v~~~~ 105 (611)
..-+-.+.+|..-+.+.+++....+
T Consensus 90 ~~~~~i~~aY~~~~~~~~~~fl~~~ 114 (397)
T TIGR00814 90 FAIYPILLIYSVAITNDSASFLVNQ 114 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988876554
No 94
>KOG2083|consensus
Probab=79.53 E-value=13 Score=41.05 Aligned_cols=218 Identities=11% Similarity=0.039 Sum_probs=107.2
Q ss_pred HHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCChhHHHHHHHhcCCch
Q psy15185 136 TLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVP-ILNYPDSMRVALQQGPPC 214 (611)
Q Consensus 136 a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~-~~sy~~l~~~~~~~G~~~ 214 (611)
...|+...++ .|=++|...|+|...|++++.+...++..|..=-.-... |.+.+ --.|--+++.
T Consensus 40 cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t----~~~vk~Gg~yflis~s-------- 104 (643)
T KOG2083|consen 40 CMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVT----RGQVKSGGVYFLISRS-------- 104 (643)
T ss_pred hhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeee----cceeccCcEEEEEEec--------
Confidence 4445554444 467899999999999999988887777666543332221 11111 0122222221
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc-cchHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Q psy15185 215 LRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA-VMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLAN 293 (611)
Q Consensus 215 ~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~ 293 (611)
.|+-..-.+.+...+.+.-++..|.+..++....++..... ..+. +..+..+++.-++.. ..+.- +.+-+
T Consensus 105 ---lg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~i~g--i~~vt~~ill~i~~a-g~~w~---~k~q~ 175 (643)
T KOG2083|consen 105 ---LGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEMIDG--IGSVTVLILLAINVA-GVEWE---AKLQI 175 (643)
T ss_pred ---ccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHHhcc--hhHHHHHHHHHhhhc-cchhH---HHHHH
Confidence 13323333444445555567788899999999988886532 1111 111111222222222 12222 22222
Q ss_pred HHHHHHHHhhhheec------c----cCCCC--CC--CCCcCCc---chhhHHHHHHHHhcccccchhcchhhccCCccc
Q psy15185 294 VITFIGLGITMYYIC------Q----ALPPV--SS--RPYFGDP---RNWNLFIGTTLFALEAVGVVIALENNMKTPASF 356 (611)
Q Consensus 294 ~~i~~~~~~v~~~~~------~----~~~~~--~~--~~~~~~~---~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~~ 356 (611)
+..++.++.+.-+.+ . +...+ +. .+...++ ..++..|+++.=+..|.-.=..+-.++|+|++-
T Consensus 176 ~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~ 255 (643)
T KOG2083|consen 176 VLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKA 255 (643)
T ss_pred HHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhh
Confidence 222222111111111 0 00000 00 0011112 356666666666666666666777889999653
Q ss_pred CccchhhhhHHHHHHHHHHHHHh
Q psy15185 357 GGYYGVLNQGMFAIVIMYVIMGF 379 (611)
Q Consensus 357 ~~~~~v~~~a~~i~~~~Y~~~g~ 379 (611)
.+ +-...+....+.+|..+-.
T Consensus 256 IP--~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 256 IP--LGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred cc--cchhhhhhhhhhhhhhhhh
Confidence 32 2566777778888865544
No 95
>PRK10484 putative transporter; Provisional
Probab=78.24 E-value=1.2e+02 Score=33.84 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHHhhhhccc-cchhHHHHhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTG-ILAMPNAFVNSGLVIGTVGTILIGILC-TYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~~~ls-~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
++.+++-..+.+..+.++++ .++.|-...+.|+... .... .+.+. .....++..-.+ |.+..|.+|.-++
T Consensus 38 R~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~~~~-~~~~~~~~~~~~~~p~~~------r~~~~T~~e~l~~ 109 (523)
T PRK10484 38 RSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-AWEV-TAAIALIILALIFLPRYL------KSGITTIPDFLEE 109 (523)
T ss_pred CCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-HHHH-HHHHHHHHHHHHHHHHHH------hcCCccHHHHHHH
Confidence 46678878888777766554 5578876667786431 1111 11111 112222222111 2234578887766
Q ss_pred HHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHH-HHHhhHHHHHHh--hcccchHH--HHH--HHHHHHHHHhhcc
Q psy15185 207 ALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIM-FVATNIKPVTDA--YIAVMDVR--IVM--VLLLLPLIGINSI 279 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i-~~~~~l~~l~~~--~~~~~~~~--~~~--~i~~~~~~~l~~~ 279 (611)
-+ |+..+.+......+........... ..+..+..++.. .. ..+.. .+. ++..+....-...
T Consensus 110 Ry----------g~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~-gi~~~~~~~~~~~~~~~i~~~Yt~~ 178 (523)
T PRK10484 110 RY----------DKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELL-GISYGAAIWLLVWLIGIIGAIYAVF 178 (523)
T ss_pred hc----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhc-CCcHHHHHHHHHHHHHHHHhhhhhh
Confidence 44 6655555444433332222222111 222222332210 11 12221 111 1122333455667
Q ss_pred cccchhhhHHHHHHHHHHHHH
Q psy15185 280 RNLKLLAPFSQLANVITFIGL 300 (611)
Q Consensus 280 ~~l~~l~~~s~~~~~~i~~~~ 300 (611)
.-++...+.-.+-.+.++...
T Consensus 179 GGl~aV~~TD~iQ~vim~i~~ 199 (523)
T PRK10484 179 GGLKAVAVSDTINGIGLLIGG 199 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 788888888777766555543
No 96
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=71.53 E-value=33 Score=36.53 Aligned_cols=64 Identities=5% Similarity=0.117 Sum_probs=46.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchh
Q psy15185 217 FAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLL 285 (611)
Q Consensus 217 ~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l 285 (611)
.+|++|+.+..+.+.+.|++++++.....+|.+.++.+ +.+.+.+..+..+....++.. .++.+
T Consensus 264 ~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~----k~~y~~~v~~~~l~s~~ia~~-Gl~~I 327 (378)
T TIGR00796 264 LFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP----KLSYKTWVIVFTLFSFIVANL-GLTQI 327 (378)
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHh-CHHHH
Confidence 34999999999999999999999999999999998865 245555555544444333332 34433
No 97
>PRK09664 tryptophan permease TnaB; Provisional
Probab=69.20 E-value=11 Score=40.45 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=73.4
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccCCCCchHHHHHHhhcCChhhhhhhhhhhHHHHHHHH
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLI 80 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~v~~~~~ 80 (611)
||.+-.++|++.+.+.++++-++.+|.-.++++...+. .+..+....+|+-++ +.++.+..+...
T Consensus 30 LP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~-----~~g~~l~tma~~~LG----------~~g~~i~~~~~~ 94 (415)
T PRK09664 30 LPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY-----PVGSSFNTITKDLIG----------NTWNIISGITVA 94 (415)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHcC----------hHHHHHHHHHHH
Confidence 69999999999999999999999999888888876532 234466666666655 788999999999
Q ss_pred HHHHhhhHHHHhhhcccccccce
Q psy15185 81 VYQLGICCVYIMFVATNIKPVSI 103 (611)
Q Consensus 81 ~~~~g~~~vy~~~ia~nl~~v~~ 103 (611)
.-.++-+..|+.=.++.+++..+
T Consensus 95 fl~Y~Ll~AYisggG~il~~~l~ 117 (415)
T PRK09664 95 FVLYILTYAYISANGAIISETIS 117 (415)
T ss_pred HHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999999999988764
No 98
>KOG1288|consensus
Probab=66.79 E-value=2e+02 Score=32.88 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHhcccccchhcchhhccCCcc-cCccchhhhhHHHHHHHHHHHHHhHhh
Q psy15185 325 NWNLFIGTTLFALEAVGVVIALENNMKTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGY 382 (611)
Q Consensus 325 ~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY 382 (611)
+|...||++.-+-.|...=-..-.|+|+|+| .++ =...+....++.|+++.++--
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~---GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPK---GTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCccccCCc---cchHHHHHHHHHHHHHHHHhc
Confidence 4555566655444444444566679999975 333 667888888999988877543
No 99
>PRK10483 tryptophan permease; Provisional
Probab=65.70 E-value=15 Score=39.55 Aligned_cols=88 Identities=6% Similarity=0.010 Sum_probs=72.5
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccCCCCchHHHHHHhhcCChhhhhhhhhhhHHHHHHHH
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLI 80 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~v~~~~~ 80 (611)
||.|-.++|.+.+.+.++++-++.+|.-.++++...+. .+..++...+|+-++ +.++.+...+..
T Consensus 32 LP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~-----~~g~~~~tma~~~LG----------~~g~~i~~~s~l 96 (414)
T PRK10483 32 LPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY-----RIGSSFDTITKDLLG----------KGWNVVNGISIA 96 (414)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHcC----------hHHHHHHHHHHH
Confidence 69999999999999999999999999888888887633 223466666666665 778889899999
Q ss_pred HHHHhhhHHHHhhhcccccccce
Q psy15185 81 VYQLGICCVYIMFVATNIKPVSI 103 (611)
Q Consensus 81 ~~~~g~~~vy~~~ia~nl~~v~~ 103 (611)
.-.++-+..|+.=.++.+++..+
T Consensus 97 fl~Y~Ll~AYisg~g~il~~~l~ 119 (414)
T PRK10483 97 FVLYILTYAYISASGSILHHTFA 119 (414)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHH
Confidence 99999999999888888887654
No 100
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=63.96 E-value=2.3e+02 Score=31.05 Aligned_cols=170 Identities=9% Similarity=0.004 Sum_probs=93.7
Q ss_pred CChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhh
Q psy15185 198 LNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGIN 277 (611)
Q Consensus 198 ~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~ 277 (611)
.|++|....-+ ..+..|++..+..++..+--.++.+.-.+..+..+++. +...-+.+..+.+..-.
T Consensus 104 yT~aD~~a~Ry---------~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv-----~~~vgv~ig~ilm~~Yv 169 (529)
T COG4147 104 YTFADFIADRY---------KSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV-----PYHVGVVIGGILMMVYV 169 (529)
T ss_pred cchHHHHHHHH---------hcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC-----CceeehhhHhHHHHHHH
Confidence 48888765433 25677888888777777777788888888888777752 33333344444445555
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhhhhe----eccc----------CCCCC---C-CCCcCCcchhhHHHHHHHHhccc
Q psy15185 278 SIRNLKLLAPFSQLANVITFIGLGITMYY----ICQA----------LPPVS---S-RPYFGDPRNWNLFIGTTLFALEA 339 (611)
Q Consensus 278 ~~~~l~~l~~~s~~~~~~i~~~~~~v~~~----~~~~----------~~~~~---~-~~~~~~~~~~~~~~g~~~faf~~ 339 (611)
...-++..+|...+--+..+.+..+.... ...+ .++.+ + .++-...++...+++...--..+
T Consensus 170 v~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~G 249 (529)
T COG4147 170 VLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVG 249 (529)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHc
Confidence 67788888888876655555443332221 1111 01000 0 11101123334444432222223
Q ss_pred ccchhcchhhc---cCCcccCccchhhhhHHHHHHHHHHHHHhHhhhh
Q psy15185 340 VGVVIALENNM---KTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVK 384 (611)
Q Consensus 340 ~~~i~~i~~~m---k~p~~~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~ 384 (611)
..-.|.+.-.- .+-|+-|+ ...++..+...+|+..-+.|+.+
T Consensus 250 TAgLPHil~RFfTvp~~k~AR~---Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 250 TAGLPHILMRFFTVPDAKEARK---SVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred cCCCCeEEEEEEecCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334332211 11223333 78899999999999988888764
No 101
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=59.52 E-value=30 Score=37.38 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=46.4
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhc
Q psy15185 216 RFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINS 278 (611)
Q Consensus 216 ~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~ 278 (611)
+.+|+.|..+..+.+.+-|+-++++-....+|.+++..+ +.+.+.|..+..+.-+.++.
T Consensus 269 ~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~----kisY~~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 269 HLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP----KISYKVWVIIFTIFSFIIAN 327 (427)
T ss_pred HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccChHHHHHHHHHHHHHHHH
Confidence 445999999999999999999999999999999999987 34556666555544444433
No 102
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=59.16 E-value=16 Score=28.64 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhh-cccCCCCchHHH
Q psy15185 17 TILIGILCTYCLHVLVRSQYELCKK-KRVPILNYPDSM 53 (611)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 53 (611)
...++++|.+-..++|||.+.|-+- +++|.-+|.|-.
T Consensus 31 faFV~~L~~fL~~liVRCfrIllDPYssmPtStW~d~~ 68 (81)
T PF11057_consen 31 FAFVGLLCLFLGLLIVRCFRILLDPYSSMPTSTWTDHK 68 (81)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHcChhhcCCcchhhhhh
Confidence 3567778888888888998887665 566777999863
No 103
>KOG3832|consensus
Probab=58.71 E-value=55 Score=31.30 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=60.7
Q ss_pred CchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHh-----HH----HHHhhcccCC-CCc----hHH-----HHHH-----
Q psy15185 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRS-----QY----ELCKKKRVPI-LNY----PDS-----MRVA----- 56 (611)
Q Consensus 1 ~p~a~~~~g~~~g~~~~~~~~~~~~~~~~~l~~~-----~~----~~~~~~~~~~-~~~----~~~-----~~~~----- 56 (611)
||.||.-+||+.++.++...|+.+.-.--..++. ++ ++.|++.... ..| .|. -|+|
T Consensus 33 lpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~dvli~d~yeraekrpi 112 (319)
T KOG3832|consen 33 LPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDDVLIADGYERAEKRPI 112 (319)
T ss_pred chHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCcEEEecCchhcccCCc
Confidence 7999999999999999999998775543333332 22 2333321110 111 000 0111
Q ss_pred ----hhcCChhh-------------hhhhhhhhHHHHHHHHHHHHhhhHHHHhhhcccccccceec
Q psy15185 57 ----LQQGPPCL-------------RFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVSIYY 105 (611)
Q Consensus 57 ----~~~~p~~~-------------r~~~~~~~~~v~~~~~~~~~g~~~vy~~~ia~nl~~v~~~~ 105 (611)
+..+|.+. -.+++.+-.+--++++++.+|=..+|---+-.+..|+.-..
T Consensus 113 lsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itcaa 178 (319)
T KOG3832|consen 113 LSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCAA 178 (319)
T ss_pred ceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhhh
Confidence 11111110 12344455566788999999999999887777777765443
No 104
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=57.30 E-value=64 Score=34.48 Aligned_cols=59 Identities=8% Similarity=0.143 Sum_probs=46.9
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhc
Q psy15185 216 RFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINS 278 (611)
Q Consensus 216 ~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~ 278 (611)
+.+|+.|+++..+++.+-|+-++++-....+|.+.+..+ ..+.+.|..++.++-+..+.
T Consensus 271 ~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p----~~SY~~~v~if~i~sflvan 329 (431)
T COG1114 271 HLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP----KLSYKTWVIIFTLISFLVAN 329 (431)
T ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHHHHHHHHHHH
Confidence 455999999999999999999999999999999999987 34566666665555444443
No 105
>PLN02680 carbon-monoxide oxygenase
Probab=49.12 E-value=2.4e+02 Score=27.71 Aligned_cols=38 Identities=5% Similarity=0.178 Sum_probs=22.8
Q ss_pred hhhccCCcccCccchhhhhHHHHHHHHHHHHHhHhhhhcCc
Q psy15185 347 ENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGS 387 (611)
Q Consensus 347 ~~~mk~p~~~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~ 387 (611)
++..+.+|+.+| .+-...-....+..++|+..-..+-+
T Consensus 69 yr~~~~~k~~~K---~iH~~L~~lA~~l~vvGl~avfk~hn 106 (232)
T PLN02680 69 YKTVPGTKNLKK---LVHLTLQFLAFCLSLIGVWAALKFHN 106 (232)
T ss_pred cccccccchhHH---HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444555544 66677777777777888855444433
No 106
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=48.04 E-value=3.5e+02 Score=28.34 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhc--ccccchhhhHHHHHHHH
Q psy15185 218 AANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINS--IRNLKLLAPFSQLANVI 295 (611)
Q Consensus 218 ~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~--~~~l~~l~~~s~~~~~~ 295 (611)
+||+..+...+...+.+.....+-+...+.-++-+. ..+...+..+..+....+-. .++.|.+..+...-+..
T Consensus 52 ~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-----g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~ 126 (358)
T PF01566_consen 52 FGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-----GIPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAV 126 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 388888888887777777777776666666665544 23344444433333322223 56677776666554444
Q ss_pred HHHHHH
Q psy15185 296 TFIGLG 301 (611)
Q Consensus 296 i~~~~~ 301 (611)
+..+++
T Consensus 127 m~l~f~ 132 (358)
T PF01566_consen 127 MVLAFL 132 (358)
T ss_pred HHHHHH
Confidence 433333
No 107
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=47.63 E-value=4e+02 Score=28.93 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHhhhhccccc-hhHHHHhhcchhhHHHHHHHHHHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTGIL-AMPNAFVNSGLVIGTVGTILIGILCTYC 178 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~giill~~~~~ls~~t 178 (611)
++-|.+++...-+.+.+|+|=+ +..-|.+-.|- .++..+=+.+++..-|
T Consensus 61 ~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat 110 (452)
T COG1115 61 GGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMAT 110 (452)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHH
Confidence 5668999999999999999954 67777776663 4666665555544333
No 108
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=32.67 E-value=2.1e+02 Score=26.43 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=25.0
Q ss_pred hhhhhccccCccccccccchhhhHHHHHHHHHHHHHHHHHhhhccccccce
Q psy15185 492 VIALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSV 542 (611)
Q Consensus 492 ~~pi~~~mk~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~~~~~i 542 (611)
.+.|+...|.++. +|++++.+.-++-.+.=...|.-||...-+.+
T Consensus 144 l~Tiy~~~k~k~t------~L~i~f~~l~vvsfi~y~itffPfGt~gvs~~ 188 (201)
T COG5102 144 LLTIYVVLKYKRT------LLNIAFCFLQVVSFIMYSITFFPFGTSGVSSI 188 (201)
T ss_pred HHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 3467777776655 67766655333333333345667776554443
No 109
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=31.92 E-value=1.6e+02 Score=31.41 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=50.9
Q ss_pred hhhhhccccCccccccccchhhhHHHHHHHHHHHHHHHHHhhhccccccceeccCC----------CCcHHHHHHHHHHH
Q psy15185 492 VIALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLP----------KEDILAQSVNAIFA 561 (611)
Q Consensus 492 ~~pi~~~mk~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~~~~~i~~nlp----------~~~~~~~~~~~~~~ 561 (611)
+..+-+|+|| |+.+| .+..++.++.++|+...+.-....+++..+ -..|.| .+++...+..+...
T Consensus 207 ~~~~~~E~k~-k~ip~---ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 281 (426)
T PF13520_consen 207 IASLAEENKN-KTIPR---AIIISIIIVAIIYILFSIALLGALPDDELA-NSSNSPSPFAVLASAVGGSWLAIIVSIAAI 281 (426)
T ss_dssp HHHGGGGSSS-HHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTHCHHH-TTTCHHCHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred cccccccccc-hhhee---ecccchhHHHHHHhhhhheeeecccchhhh-cccccccccchhhccccccccccccccccc
Confidence 3345556888 78998 999999999999999977666665543221 111111 01345555556666
Q ss_pred HHHHHHhccccchhHHHHH
Q psy15185 562 VAIFISYGLQCYVPVEIIW 580 (611)
Q Consensus 562 ~~~~~~ypl~~~~~~~i~~ 580 (611)
+..+.+-.-.+....|...
T Consensus 282 ~~~~~~~~~~~~~~sR~l~ 300 (426)
T PF13520_consen 282 LSLFGSINAFIFGASRLLY 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhcchhhccc
Confidence 6666655555554555443
No 110
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=31.85 E-value=7.4e+02 Score=27.38 Aligned_cols=194 Identities=8% Similarity=0.063 Sum_probs=86.7
Q ss_pred CCChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc------------cch-HH
Q psy15185 197 ILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA------------VMD-VR 263 (611)
Q Consensus 197 ~~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~------------~~~-~~ 263 (611)
..+|+.+.|..|| .+|.....+....+.+.-+|.-+- ..+..+..++..+.+ ..+ ..
T Consensus 102 gIpFpv~~RaSFG-------i~Ga~~p~l~R~i~A~~WyGvqty---~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~ 171 (497)
T COG1953 102 GIPFPVLSRASFG-------IYGANFPALIRAIVAIVWYGVQTY---AGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLE 171 (497)
T ss_pred CCCchHHHHHHHh-------hhhhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhccccccCCccccccCCcHHH
Confidence 3689999999994 345556666666666666654332 223333333333322 111 22
Q ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHhhhheecccCCC---CCCCC-----CcCCcchhhHHHHHHHH
Q psy15185 264 IVMVLLLLPLIGINSIRNLKLLAPFSQLANVITFIGLGITMYYICQALPP---VSSRP-----YFGDPRNWNLFIGTTLF 335 (611)
Q Consensus 264 ~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~g~~~f 335 (611)
+..+++...+-.+...+..++++.+-..+-..+.+...-..++....... ..+.+ ....+..+...... ..
T Consensus 172 ~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~-~v 250 (497)
T COG1953 172 LICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAA-WV 250 (497)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHH-HH
Confidence 22223333333334444455555444444444333332222222211111 11111 11111222222211 11
Q ss_pred hc--ccccchhcchhhccCCcccCcc-chhhhhHHHHHHHHHHHHHhHhhhhcCccccc--ccccccCCcC
Q psy15185 336 AL--EAVGVVIALENNMKTPASFGGY-YGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQG--SVTLNLPKED 401 (611)
Q Consensus 336 af--~~~~~i~~i~~~mk~p~~~~~~-~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~~~--~il~n~p~~~ 401 (611)
++ ...-|+|+.-+.-|+|+.-..- ...+-..+.+..++=...+..++..||+...+ ++..++++..
T Consensus 251 ~~~Atl~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~ 321 (497)
T COG1953 251 GFWATLALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGF 321 (497)
T ss_pred HHHHHHhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccch
Confidence 11 1246778888887776433220 00122233333444444455567789998554 6677775543
No 111
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=29.24 E-value=7.9e+02 Score=26.90 Aligned_cols=121 Identities=16% Similarity=0.159 Sum_probs=60.5
Q ss_pred CHHHHHHHHHhhhhccccchh----HHHHhhc---chh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15185 132 TNNETLIHLLKGSLGTGILAM----PNAFVNS---GLV---------IGTVGTILIGILCTYCLHVLVRSQYELCKKKRV 195 (611)
Q Consensus 132 s~~~a~~~l~~~~iG~GiL~L----P~af~~~---G~~---------~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~ 195 (611)
|.++=+..+..+-+|+|++.- |....+. |.- .+.....+=..+.-|+.+.+.-..-.+-..+|+
T Consensus 38 S~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~rk~ 117 (453)
T TIGR00842 38 STLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFHVRKG 117 (453)
T ss_pred cchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhheecC
Confidence 344444567778888888754 3222211 111 122222222334444444444322221112233
Q ss_pred CCCChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc
Q psy15185 196 PILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA 258 (611)
Q Consensus 196 ~~~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~ 258 (611)
+..+.++..+-.+ |+ +..|+.| .++|+..++...+...+-+-+...++..-++...+
T Consensus 118 ~~~~iss~~~pll--G~---~~~g~~g-~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~g 174 (453)
T TIGR00842 118 LPLRLSSALVPLL--GE---RVNGPIG-KAIDIMALVATLFGVATSLGLGAPQINAGLSALFG 174 (453)
T ss_pred CCCchhhhhhccc--CC---cccCccH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 3456777777666 33 2235555 46676666666666666666666666666666554
No 112
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=27.02 E-value=1.4e+02 Score=28.53 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=51.8
Q ss_pred chhhhHHHHhhhHHHHHHHHHHHHHHHHHcCCCCC-----C--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15185 413 RLELFISLFGAFCLSALGIAFPGIIEMCVLWPDQF-----G--PFKFILIRDILLIIGGIFALILGTFISLQDIVR 481 (611)
Q Consensus 413 ~~~~il~l~Ga~~~~~l~filP~l~~l~~~~~~~~-----~--~~~~~~~~~~~i~~~Gi~~~v~gt~~si~~ii~ 481 (611)
+++.-.-+.|++.++-+..++|+...+.+.++.-- . -+|..-+..++.-.+|+++.+++...|...+.+
T Consensus 42 ~is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 42 HISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred CcchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35555667788999999999999999998766200 0 123445677788889999999999988888876
No 113
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=26.36 E-value=2.6e+02 Score=30.40 Aligned_cols=59 Identities=7% Similarity=0.048 Sum_probs=45.5
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcc
Q psy15185 216 RFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSI 279 (611)
Q Consensus 216 ~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~ 279 (611)
+.+|++++++..+.+.+-|+-++++-....+|.+++..+ .+.+.+..+..+.-++++.+
T Consensus 273 ~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-----isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 273 HTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-----LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHHHHHHh
Confidence 456999999999999999999999999999999888763 34555555555555554443
No 114
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=25.35 E-value=3.5e+02 Score=22.10 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCccchhhhhhccccCccccccccchhhhHHHHHHHHHHHHHHHHHhhhcccccc
Q psy15185 461 IIGGIFALILGTFISLQDIVRSFKLDLSMNYVIALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQG 540 (611)
Q Consensus 461 ~~~Gi~~~v~gt~~si~~ii~~~~~~~~~~~~~pi~~~mk~p~~f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~~~~ 540 (611)
++.|++..+.+...+-.+ |++++ .+|.+..+ =......+++.+-..+|++.|-+|| .+.+
T Consensus 15 li~GIiLL~~ACIFAfid----FSK~~------------s~~~~~~w---RalSii~FIlG~vl~lGilifs~y~-~C~~ 74 (91)
T PHA02680 15 LICGVLLLTAACVFAFVD----FSKNT------------SNVTDYVW---RALSVTCFIVGAVLLLGLFVFSMYR-KCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHhhhh----hhccC------------CCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHhc-ccCC
Confidence 345666666655544443 33321 24555554 2333344556667788999999999 6554
Q ss_pred ce
Q psy15185 541 SV 542 (611)
Q Consensus 541 ~i 542 (611)
+.
T Consensus 75 ~~ 76 (91)
T PHA02680 75 SM 76 (91)
T ss_pred Cc
Confidence 33
No 115
>PF15069 FAM163: FAM163 family
Probab=24.82 E-value=1e+02 Score=27.64 Aligned_cols=31 Identities=32% Similarity=0.624 Sum_probs=22.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q psy15185 7 NSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKR 43 (611)
Q Consensus 7 ~~g~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 43 (611)
-+|++..+|++.+|+++|.= +=++..||+.+
T Consensus 9 tGgILAtVILLcIIaVLCYC------RLQYYCCKK~~ 39 (143)
T PF15069_consen 9 TGGILATVILLCIIAVLCYC------RLQYYCCKKNE 39 (143)
T ss_pred echHHHHHHHHHHHHHHHHH------hhHHHHhhccC
Confidence 47888999999999988843 12455788753
No 116
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=23.25 E-value=6.1e+02 Score=28.98 Aligned_cols=42 Identities=10% Similarity=-0.023 Sum_probs=25.4
Q ss_pred hhccccchhHHHH--hhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15185 144 SLGTGILAMPNAF--VNSGLVIGTVGTILIGILCTYCLHVLVRS 185 (611)
Q Consensus 144 ~iG~GiL~LP~af--~~~G~~~giill~~~~~ls~~t~~lL~~~ 185 (611)
....++......+ .+..+...++.+++..+++.-+.+...+.
T Consensus 366 ~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t 409 (624)
T PF03169_consen 366 SFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGET 409 (624)
T ss_pred HHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhc
Confidence 3444466667777 45556556666666666666666665553
No 117
>PRK11021 putative transporter; Provisional
Probab=22.89 E-value=2e+02 Score=30.78 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=26.4
Q ss_pred hhhccccCcc-ccccccchhhhHHHHHHHHHHHHHHH
Q psy15185 494 ALENNMKTPA-SFGGYYGVLNQGMFAIVIMYVIMGFL 529 (611)
Q Consensus 494 pi~~~mk~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~ 529 (611)
..-.|+|||+ +.|+ .+..++..+..+|+...+.
T Consensus 198 ~~a~E~k~P~k~iPr---Ai~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 198 HLASEFKNPERDFPR---ALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred hhHHhccCccccccH---HHHHHHHHHHHHHHHHHHH
Confidence 4455788875 6888 9999999999999987654
No 118
>KOG1289|consensus
Probab=22.69 E-value=1.1e+03 Score=26.37 Aligned_cols=36 Identities=6% Similarity=0.040 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHH
Q psy15185 219 ANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTD 254 (611)
Q Consensus 219 G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~ 254 (611)
||++.......+++..+..+++-++..+........
T Consensus 336 g~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 336 GKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred CCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 777778888888888888888888887777766654
No 119
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.95 E-value=4e+02 Score=24.82 Aligned_cols=87 Identities=11% Similarity=0.128 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHH
Q psy15185 219 ANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVITFI 298 (611)
Q Consensus 219 G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~i~~ 298 (611)
+.+|..+--+++.+..++++..|..+.+..-...... .++..+|.+++.+.--.+..+++++++.+-..+..+|+.+
T Consensus 66 t~~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi---~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~Ciyi 142 (173)
T PF11085_consen 66 TWLGNLIGIVFIGVFSIVAALLYYALLKKFKGPWPGI---LYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYI 142 (173)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH---HHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHH
Confidence 3455666666666667777777776665542222211 2233444443333212223467778888878888888777
Q ss_pred HHHhhhheec
Q psy15185 299 GLGITMYYIC 308 (611)
Q Consensus 299 ~~~~v~~~~~ 308 (611)
.-.+-+.|++
T Consensus 143 LyGlFIGYSI 152 (173)
T PF11085_consen 143 LYGLFIGYSI 152 (173)
T ss_pred HHHHHhceee
Confidence 6666565655
No 120
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=20.43 E-value=2.2e+02 Score=21.17 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.7
Q ss_pred HHHHHhhcccCCCCchHHHHHHhhcC
Q psy15185 35 QYELCKKKRVPILNYPDSMRVALQQG 60 (611)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (611)
..+|.|+.+....+|+.+...|+++.
T Consensus 19 ~yhLYrsek~G~rdYEKY~~LAL~D~ 44 (56)
T TIGR02736 19 IYHLYRSQKKGERDYEKYANLALNDD 44 (56)
T ss_pred HHHhhhhhcccccCHHHHhhhhcccc
Confidence 66788888888899999998888764
No 121
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=20.10 E-value=2.1e+02 Score=23.31 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHHHhcccccchhcchhhccCCcccCccchhhhhHHHHHHHHHHHHHhHhhhhcCcccccccc
Q psy15185 330 IGTTLFALEAVGVVIALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVT 394 (611)
Q Consensus 330 ~g~~~faf~~~~~i~~i~~~mk~p~~~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~~~~~il 394 (611)
.|+...+-.|.....+..++-.+|.+... +....++ +...+-+++|++.|-.||....+...
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~w-RalSii~--FIlG~vl~lGilifs~y~~C~~~~~~ 78 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVW-RALSVTC--FIVGAVLLLGLFVFSMYRKCSGSMPY 78 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhH-HHHHHHH--HHHHHHHHHHHHHHHHhcccCCCcee
Confidence 45555555555555676666556654332 2122223 33445577889999999955544333
Done!