Query psy15185
Match_columns 611
No_of_seqs 404 out of 1960
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 22:46:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.3 4.7E-10 1.6E-14 120.7 27.9 241 128-388 7-253 (445)
2 3gia_A Uncharacterized protein 99.0 7.2E-08 2.5E-12 103.5 24.2 239 128-387 5-249 (444)
3 4djk_A Probable glutamate/gamm 98.7 7.8E-06 2.7E-10 89.1 28.3 238 127-388 9-263 (511)
4 2jln_A MHP1; hydantoin, transp 97.7 0.0047 1.6E-07 67.0 23.5 220 115-355 13-239 (501)
5 3dh4_A Sodium/glucose cotransp 95.3 4 0.00014 44.1 27.2 154 129-304 20-175 (530)
6 2xq2_A Sodium/glucose cotransp 93.7 9.6 0.00033 41.7 25.2 191 74-302 10-202 (593)
7 2wsw_A BCCT family betaine/car 30.0 5.1E+02 0.018 27.3 14.3 23 130-152 90-112 (509)
8 2a65_A Leutaa, Na(+):neurotran 27.4 5.7E+02 0.02 27.0 28.1 34 127-160 5-39 (519)
9 4ain_A Glycine betaine transpo 23.3 3.7E+02 0.013 28.6 10.3 123 130-258 95-230 (539)
10 4djk_A Probable glutamate/gamm 23.0 1.3E+02 0.0046 31.3 7.1 42 493-537 221-263 (511)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.32 E-value=4.7e-10 Score=120.66 Aligned_cols=241 Identities=11% Similarity=0.041 Sum_probs=154.1
Q ss_pred CCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
+++.+.++.+...+.+++|+|++.+|...++.|.. +++..++.++........+.|...+.++ .-..-+..++.
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-----~Gg~y~~~~~~ 80 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-----PGGSYAYARRC 80 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-----TTTHHHHHHHH
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-----CCCchhhHHhH
Confidence 35789999999999999999999999988888863 6777777778777777777776654322 22455555666
Q ss_pred HhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhh
Q psy15185 208 LQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAP 287 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~ 287 (611)
+ ||+..++......+.......++....++.+...++...+.+....+.+ ..+.+......+..|....
T Consensus 81 ~----------G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 81 F----------GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCV-VVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp S----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHH-HHHHHHHHHHHHCHHHHHH
T ss_pred c----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHH-HHHHHHHHHHHhchHHHHH
Confidence 5 8888888888877777666667777776666544332111121222222 2222233333456666666
Q ss_pred HHHHHHHHHHHHHHhhhheecccC-CCC--CCCC--CcCCcchhhHHHHHHHHhcccccchhcchhhccCCcc-cCccch
Q psy15185 288 FSQLANVITFIGLGITMYYICQAL-PPV--SSRP--YFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS-FGGYYG 361 (611)
Q Consensus 288 ~s~~~~~~i~~~~~~v~~~~~~~~-~~~--~~~~--~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~-~~~~~~ 361 (611)
+..+.....+..++.+........ ++. +... ...++.++...+....|+|.+...+....+|+|||+| .+|
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~--- 226 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI--- 226 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH---
Confidence 655554444333332222222111 111 0110 1112456778888899999999999999999999954 555
Q ss_pred hhhhHHHHHHHHHHHHHhHhhhhcCcc
Q psy15185 362 VLNQGMFAIVIMYVIMGFLGYVKYGSA 388 (611)
Q Consensus 362 v~~~a~~i~~~~Y~~~g~~GY~~fG~~ 388 (611)
.+..+..++.++|....+......+.+
T Consensus 227 a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 227 ATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 899999999999999998877776643
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.97 E-value=7.2e-08 Score=103.47 Aligned_cols=239 Identities=10% Similarity=0.074 Sum_probs=142.3
Q ss_pred CCCCCHHHHHHHHHhhhhccccchhH-HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q psy15185 128 EHATTNNETLIHLLKGSLGTGILAMP-NAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRV 206 (611)
Q Consensus 128 ~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 206 (611)
+++.+.++.+...+.+++|+|++..| .+.+++|- ...+..++.+++...+...+.|...+.++ .-..-+..++
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-----~Gg~y~~~~~ 78 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-----NAGPIAFIHK 78 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----TTTHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCcHHHhHHH
Confidence 45789999999999999999999987 45566676 56777777777777777777776554321 2244455666
Q ss_pred HHhcCCchhhhhhhh--HHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccch
Q psy15185 207 ALQQGPPCLRFAANA--SAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKL 284 (611)
Q Consensus 207 ~~~~G~~~~~~~G~~--g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~ 284 (611)
.+ |+. +.+ +.....+........+....++.+...++.....+.... ..+..+.+......+..|.
T Consensus 79 ~~----------G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~in~~g~~~ 146 (444)
T 3gia_A 79 AI----------GDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAI-TEIGIVAFFTALNFFGSKA 146 (444)
T ss_dssp HH----------CSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH-HHHHHHHHHHHHHHHTHHH
T ss_pred Hh----------CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH-HHHHHHHHHHHHHHHhHHH
Confidence 66 442 222 233334444445566666667766655432110111111 1122222233333455565
Q ss_pred hhhHHHHHHHHHHHHHHhhhheecc--cCCCCCCCCCcCCcchhhHHHHHHHHhcccccchhcchhhccCCcc-cCccch
Q psy15185 285 LAPFSQLANVITFIGLGITMYYICQ--ALPPVSSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPAS-FGGYYG 361 (611)
Q Consensus 285 l~~~s~~~~~~i~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~i~~i~~~mk~p~~-~~~~~~ 361 (611)
...+..+.....+..++..+..... +..+..+.....++.++...+....|+|.|...+....+|+|||+| .+|
T Consensus 147 ~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~--- 223 (444)
T 3gia_A 147 VGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR--- 223 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH---
Confidence 5555554444333332222211111 1111111111122456677777888999999999999999999965 555
Q ss_pred hhhhHHHHHHHHHHHHHhHhhhhcCc
Q psy15185 362 VLNQGMFAIVIMYVIMGFLGYVKYGS 387 (611)
Q Consensus 362 v~~~a~~i~~~~Y~~~g~~GY~~fG~ 387 (611)
.+..+..++.++|....+......+.
T Consensus 224 ai~~~~~~~~~~y~~~~~~~~~~~~~ 249 (444)
T 3gia_A 224 AIFISILIVMFVYVGVAISAIGNLPI 249 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 89999999999999988876655553
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.67 E-value=7.8e-06 Score=89.14 Aligned_cols=238 Identities=13% Similarity=0.048 Sum_probs=128.5
Q ss_pred cCCCCCHHHHHHHHHhhhhccccchhHHHHhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHH--HHHhhcCCCCCChhHH
Q psy15185 127 LEHATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILC-TYCLHVLVRSQY--ELCKKKRVPILNYPDS 203 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~ls-~~t~~lL~~~~~--~~~~~~~~~~~sy~~l 203 (611)
.+++.+.++.+...++.++| +.++|. .++.|.. .++..++.+++. ..+...+.|... ..+ .-..-..
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P------~GG~y~~ 78 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE------EGGVFAW 78 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---------CHHHH
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC------CCChhhh
Confidence 34688999999999999986 567775 4667753 233333333322 224444555443 221 1234444
Q ss_pred HHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHH--Hhhcc-cchHHHHHHHHHHHHHHhhccc
Q psy15185 204 MRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVT--DAYIA-VMDVRIVMVLLLLPLIGINSIR 280 (611)
Q Consensus 204 ~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~--~~~~~-~~~~~~~~~i~~~~~~~l~~~~ 280 (611)
.++.+ |+..+++......+.......++....++.+.... +.... .+....+.+++.+ +......+
T Consensus 79 ~~~~~----------g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~in~~ 147 (511)
T 4djk_A 79 VSNTL----------GPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILW-ALALTQFG 147 (511)
T ss_dssp HHHHH----------CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHH-HHHHHHHT
T ss_pred HHhhc----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHH-HHHHHHHh
Confidence 55555 77777888777777766666666666666654332 11111 2222222222222 22233344
Q ss_pred ccchhhhHHHHHHHH-H---HHHHHhhhh-eecccCCC---CCCCCCcCC--cchhhHHHHHHHHhcccccchhcchhhc
Q psy15185 281 NLKLLAPFSQLANVI-T---FIGLGITMY-YICQALPP---VSSRPYFGD--PRNWNLFIGTTLFALEAVGVVIALENNM 350 (611)
Q Consensus 281 ~l~~l~~~s~~~~~~-i---~~~~~~v~~-~~~~~~~~---~~~~~~~~~--~~~~~~~~g~~~faf~~~~~i~~i~~~m 350 (611)
..|....+..+.... . +..+++... ....+.+. .+......+ ..+....+....|+|.|...+....+|+
T Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~ 227 (511)
T 4djk_A 148 GTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEM 227 (511)
T ss_dssp CSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 555555555443222 1 111111111 11111110 010111111 1234455677899999999999999999
Q ss_pred cCCcc-cCccchhhhhHHHHHHHHHHHHHhHhhhhcCcc
Q psy15185 351 KTPAS-FGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSA 388 (611)
Q Consensus 351 k~p~~-~~~~~~v~~~a~~i~~~~Y~~~g~~GY~~fG~~ 388 (611)
|||+| .+| ++..++.++.++|++..+.-....+++
T Consensus 228 k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 228 SNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp SCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred cCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 99965 444 899999999999999998877776654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.70 E-value=0.0047 Score=66.95 Aligned_cols=220 Identities=8% Similarity=-0.010 Sum_probs=117.9
Q ss_pred CCCCCCCCCccccCCCCCHHHHHHHHHhhhhccccchhHHHHhh-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15185 115 DSTPYDPHKHRVLEHATTNNETLIHLLKGSLGTGILAMPNAFVN-SGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKK 193 (611)
Q Consensus 115 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~ 193 (611)
++++.+|..+++ ++.++++-+..-+...++.+...+...+.. .++.-+++.+++..++...-+.+......+ .
T Consensus 13 e~~~i~pvp~~~--R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~----~ 86 (501)
T 2jln_A 13 LNPSNAPTRYAE--RSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIR----W 86 (501)
T ss_dssp CCSTTSCCCGGG--CCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH----H
T ss_pred ccCCCCCCChhh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh----c
Confidence 344444444332 345777666666666666666666554444 234445554444444444333333333333 2
Q ss_pred CCCCCChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcccch-HHHHHHHHHHH
Q psy15185 194 RVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMD-VRIVMVLLLLP 272 (611)
Q Consensus 194 ~~~~~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~-~~~~~~i~~~~ 272 (611)
+ .++.++.|..| |++|..+..+...+.++|-...-....++.+..++....+ ++ .....+++.+.
T Consensus 87 G---l~~~v~~R~~F----------G~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g-~~~~~v~~~i~~~l 152 (501)
T 2jln_A 87 G---INFTVAARMPF----------GIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG-FTNLPLWIVIFGAI 152 (501)
T ss_dssp C---CCHHHHTTTTS----------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred C---CChhhhhHhhc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 2 46888888877 8899999999999999999988888889998888764432 22 22333333333
Q ss_pred HHHhhcccccchhhhHHHHHHHHHHHHHHhhhheecccCC----CCCCCCCcCCcchhhHHHHH-HHHhcccccchhcch
Q psy15185 273 LIGINSIRNLKLLAPFSQLANVITFIGLGITMYYICQALP----PVSSRPYFGDPRNWNLFIGT-TLFALEAVGVVIALE 347 (611)
Q Consensus 273 ~~~l~~~~~l~~l~~~s~~~~~~i~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~-~~faf~~~~~i~~i~ 347 (611)
..+.. ....+.+..+..++....+..++...+....+.. +..+.+.......+..++.. +.+.-....+.++..
T Consensus 153 ~~~~~-~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~Dys 231 (501)
T 2jln_A 153 QVVTT-FYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIV 231 (501)
T ss_dssp HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHH
T ss_pred HHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCccc
Confidence 33333 3345556555655554444443333322221111 00011111112233333332 222223346678888
Q ss_pred hhccCCcc
Q psy15185 348 NNMKTPAS 355 (611)
Q Consensus 348 ~~mk~p~~ 355 (611)
+.+|++++
T Consensus 232 Ry~~~~~~ 239 (501)
T 2jln_A 232 KECKVDPN 239 (501)
T ss_dssp TTBCCCTT
T ss_pred ccCCCCcc
Confidence 89988766
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=95.32 E-value=4 Score=44.11 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHhhhhccc-cchhHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH
Q psy15185 129 HATTNNETLIHLLKGSLGTG-ILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVA 207 (611)
Q Consensus 129 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 207 (611)
++.+++...+.+..+.+++. .+++|-...+.|+........ .++.-......+..-.++ .+..|.+|.-++-
T Consensus 20 R~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~------~~~~T~~e~l~~R 92 (530)
T 3dh4_A 20 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE------KGIYTIPEFVEKR 92 (530)
T ss_dssp SCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHH------TTCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHH------cCCccHHHHHHHH
Confidence 56788888888887777664 568998888888753321111 111111112222222221 2346899988775
Q ss_pred HhcCCchhhhhhhhHHHHHHHHHHH-HhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhh
Q psy15185 208 LQQGPPCLRFAANASAIIVDMFLIV-YQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLA 286 (611)
Q Consensus 208 ~~~G~~~~~~~G~~g~~~v~i~~~~-~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~ 286 (611)
+ |+..+.+..+...+ +.+..+.+-+...+..++.++ .++...-+++..+....-....-++...
T Consensus 93 f----------g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~-----Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 93 F----------NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL-----GIPLMYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp T----------CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHTTC------CC
T ss_pred c----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4 77777776665443 222222332333344444433 2444444455555556667778888888
Q ss_pred hHHHHHHHHHHHHHHhhh
Q psy15185 287 PFSQLANVITFIGLGITM 304 (611)
Q Consensus 287 ~~s~~~~~~i~~~~~~v~ 304 (611)
+.-.+-.+.++.+.+++.
T Consensus 158 ~TD~iQ~~im~~g~~~v~ 175 (530)
T 3dh4_A 158 WTDVIQVFFLVLGGFMTT 175 (530)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877776665544443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=93.74 E-value=9.6 Score=41.67 Aligned_cols=191 Identities=11% Similarity=0.091 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhhhHHHHhhhcccccccceecccCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhhhcccc-chh
Q psy15185 74 IVDMFLIVYQLGICCVYIMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHKHRVLEHATTNNETLIHLLKGSLGTGI-LAM 152 (611)
Q Consensus 74 ~v~~~~~~~~~g~~~vy~~~ia~nl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~Gi-L~L 152 (611)
.+|..+++.++........+.++.-|+. +++.+|+- --.++.+++.....+..+.+++.. ++.
T Consensus 10 ~~d~~i~~~yl~~~~~ig~~~~r~~~~~-----------~~~~~dy~-----laGR~l~~~~~~~Sl~at~~sa~t~lG~ 73 (593)
T 2xq2_A 10 FIDIMVFAIYVAIIIGVGLWVSRDKKGT-----------QKSTEDYF-----LAGKSLPWWAVGASLIAANISAEQFIGM 73 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-----------------------------------CCHHHHHHHHHGGGSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC-----------CCCHHHHh-----cCCCCCCHHHHHHHHHHHHhcHHHHhhH
Confidence 5788888888888777777766543320 00111111 111356788888888877776654 588
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHhcCCchhhhhhhhHHHHHHHHHHH
Q psy15185 153 PNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIV 232 (611)
Q Consensus 153 P~af~~~G~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~G~~~~~~~G~~g~~~v~i~~~~ 232 (611)
|-...+.|+........ .++........+..-.+ | .+..|.+|.-++-+ |+..+.+..+...+
T Consensus 74 ~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~----r--~~~~T~~e~l~~Rf----------g~~~~~~~ai~~l~ 136 (593)
T 2xq2_A 74 SGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFI----E--KGIYTIPEFVEKRF----------NKKLKTILAVFWIS 136 (593)
T ss_dssp HHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHH----H--TTCCSHHHHHHHHT----------CHHHHHHHHHHHHH
T ss_pred hHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHH----h--CCCCCcHHHHHHHc----------cCchHHHHHHHHHH
Confidence 98777888753322111 11101111222222222 1 22458888877644 77777666654433
Q ss_pred -HhhhhhHHHHHHHHhhHHHHHHhhcccchHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q psy15185 233 -YQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVITFIGLGI 302 (611)
Q Consensus 233 -~~~g~~i~Y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~l~~l~~~s~~~~~~i~~~~~~ 302 (611)
..+......+...+..++.++ .++...-.++..+....-....-++...+.-.+-.+.++.+.++
T Consensus 137 ~~~~~~~~~~l~~~~~~l~~~~-----Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~ 202 (593)
T 2xq2_A 137 LYIFVNLTSVLYLGGLALETIL-----GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFM 202 (593)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 233222333333444455544 23444444444444455566677777777776666555544333
No 7
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=30.04 E-value=5.1e+02 Score=27.28 Aligned_cols=23 Identities=4% Similarity=0.112 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHhhhhccccchh
Q psy15185 130 ATTNNETLIHLLKGSLGTGILAM 152 (611)
Q Consensus 130 ~~s~~~a~~~l~~~~iG~GiL~L 152 (611)
+-|.++=+..+..+-+|.|++.-
T Consensus 90 efs~~sW~aMlF~aGmGiGl~fw 112 (509)
T 2wsw_A 90 EFSTASWIFMMFASCTSAAVLFW 112 (509)
T ss_dssp SSCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCccchHHHHHHHHhhhhHHhhh
Confidence 45666666778889999998875
No 8
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=27.42 E-value=5.7e+02 Score=26.97 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=28.0
Q ss_pred cCCCCCHHHHHHHHHhhhhccc-cchhHHHHhhcc
Q psy15185 127 LEHATTNNETLIHLLKGSLGTG-ILAMPNAFVNSG 160 (611)
Q Consensus 127 ~~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G 160 (611)
+++-+|..+-++..+.+.+|.| +-=.||-..+.|
T Consensus 5 R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nG 39 (519)
T 2a65_A 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENG 39 (519)
T ss_dssp CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred cccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 3456678888999999999999 778999777776
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=23.30 E-value=3.7e+02 Score=28.55 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHhhhhccccchh----HHHHhhc---c-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy15185 130 ATTNNETLIHLLKGSLGTGILAM----PNAFVNS---G-----LVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPI 197 (611)
Q Consensus 130 ~~s~~~a~~~l~~~~iG~GiL~L----P~af~~~---G-----~~~giill~~~~~ls~~t~~lL~~~~~~~~~~~~~~~ 197 (611)
+-|.++=+..+..+-+|.|++.- |....+. | .-.+.-...+=..+.-|+.+.++-..-.+-..+|+..
T Consensus 95 efS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~~p 174 (539)
T 4ain_A 95 EFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRK 174 (539)
T ss_dssp SSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTCCC
T ss_pred CCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666667778889999998843 3222211 1 1122333333334445555555443322211112222
Q ss_pred CChhHHHHHHHhcCCchhh-hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhcc
Q psy15185 198 LNYPDSMRVALQQGPPCLR-FAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIA 258 (611)
Q Consensus 198 ~sy~~l~~~~~~~G~~~~~-~~G~~g~~~v~i~~~~~~~g~~i~Y~i~~~~~l~~l~~~~~~ 258 (611)
.+.++..+-.+| .+ ..|+.|+ ++|+.-++..++...+-+-+...++..-++...+
T Consensus 175 l~iss~l~PllG-----~r~~~G~~G~-~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfG 230 (539)
T 4ain_A 175 QLLSSAFVPLIG-----EKGAEGWLGK-LIDILAIIATVFGTACSLGLGALQIGAGLSAANI 230 (539)
T ss_dssp SCTTGGGHHHHH-----HHHTTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcHHHHhHhhcC-----CCccCCcchh-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 455555554441 12 2466655 6677666665555555566666666655555543
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=23.01 E-value=1.3e+02 Score=31.28 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=33.8
Q ss_pred hhhhccccCcc-ccccccchhhhHHHHHHHHHHHHHHHHHhhhccc
Q psy15185 493 IALENNMKTPA-SFGGYYGVLNQGMFAIVIMYVIMGFLGYVKYGSA 537 (611)
Q Consensus 493 ~pi~~~mk~p~-~f~~~~~vl~~~~~~~~~~y~~~g~~gyl~fG~~ 537 (611)
..+-.++|||+ +.++ .+..++.+++++|....+.-....+++
T Consensus 221 ~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 221 ATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 35667899986 5788 899999999999999988777666644
Done!