Query psy15185
Match_columns 611
No_of_seqs 404 out of 1960
Neff 8.5
Searched_HMMs 13730
Date Fri Aug 16 22:46:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15185.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15185hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 9.1 1.4E+02 0.0099 16.5 2.6 19 7-25 6-24 (30)
2 d1jfia_ a.22.1.3 (A:) Negative 7.9 2.4E+02 0.017 18.6 4.4 38 17-54 26-63 (66)
3 d1n1jb_ a.22.1.3 (B:) Nuclear 7.7 2.8E+02 0.021 18.8 5.0 42 17-58 24-65 (78)
4 d1yo5c1 a.4.5.21 (C:247-334) S 7.1 1.6E+02 0.012 21.2 3.2 29 34-62 41-69 (88)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 5.9 6.4E+02 0.047 20.2 7.7 31 11-41 94-124 (199)
6 d1flia_ a.4.5.21 (A:) Fli-1 {H 5.8 1.7E+02 0.012 21.6 2.7 26 34-59 42-67 (98)
7 d1duxc_ a.4.5.21 (C:) Elk-1 {H 5.6 1.6E+02 0.012 21.0 2.5 29 34-62 38-66 (86)
8 d3bpya1 a.4.5.14 (A:93-177) Af 5.0 1.4E+02 0.01 21.4 1.7 23 40-62 1-23 (85)
9 d2q7ra1 f.56.1.1 (A:1-139) Ara 4.5 4.6E+02 0.033 20.1 4.8 47 35-84 27-74 (139)
10 d1awca_ a.4.5.21 (A:) GA bindi 4.1 2.8E+02 0.021 20.7 3.0 29 34-62 37-65 (110)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.08 E-value=1.4e+02 Score=16.52 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=14.4
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q psy15185 7 NSGLVIGTVGTILIGILCT 25 (611)
Q Consensus 7 ~~g~~~g~~~~~~~~~~~~ 25 (611)
-+|++.|++=.-+.|.+.+
T Consensus 6 l~GivlGlipiTl~Glfv~ 24 (30)
T d1q90g_ 6 LCGIVLGLVPVTIAGLFVT 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHHHHHHHH
Confidence 3689999988888776654
No 2
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.88 E-value=2.4e+02 Score=18.59 Aligned_cols=38 Identities=8% Similarity=0.198 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcccCCCCchHHHH
Q psy15185 17 TILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMR 54 (611)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 54 (611)
..+++-.+-+-++-|.+.+...|++.++-.++|.|+.+
T Consensus 26 ~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~ 63 (66)
T d1jfia_ 26 PVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQ 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHH
Confidence 45677788888889999999999998888899988753
No 3
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.69 E-value=2.8e+02 Score=18.76 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcccCCCCchHHHHHHhh
Q psy15185 17 TILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQ 58 (611)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (611)
..+++-.+.+=++-|.+.++..|++.++-.++|.|..+...+
T Consensus 24 ~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~ 65 (78)
T d1n1jb_ 24 PVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhc
Confidence 345666677777788888999999988889999998766544
No 4
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.14 E-value=1.6e+02 Score=21.23 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=22.0
Q ss_pred hHHHHHhhcccCCCCchHHHHHHhhcCCh
Q psy15185 34 SQYELCKKKRVPILNYPDSMRVALQQGPP 62 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 62 (611)
-|+..+++++.|.|+|..+.+.-+.++..
T Consensus 41 VA~lWG~~Knk~~M~YeklSRALRyYY~~ 69 (88)
T d1yo5c1 41 VARLWGIRKNRPAMNYDKLSRSIRQYYKK 69 (88)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Confidence 36667778889999999887776666554
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.87 E-value=6.4e+02 Score=20.16 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy15185 11 VIGTVGTILIGILCTYCLHVLVRSQYELCKK 41 (611)
Q Consensus 11 ~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 41 (611)
.......+.+|....|+.|+.-+-.++..++
T Consensus 94 ~s~~~~~i~igi~vd~~i~i~~~~~~~~~~~ 124 (199)
T d1iwga7 94 LTMFGMVLAIGLLVDDAIVVVENVERVMAEE 124 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 4455667788888899999888766655433
No 6
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.80 E-value=1.7e+02 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=19.2
Q ss_pred hHHHHHhhcccCCCCchHHHHHHhhc
Q psy15185 34 SQYELCKKKRVPILNYPDSMRVALQQ 59 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (611)
-|+..++++++|.|+|..+.+.-+.+
T Consensus 42 VA~lWG~~Knk~~M~YeklSRaLRyY 67 (98)
T d1flia_ 42 VARRWGERKSKPNMNYDKLSRALRYY 67 (98)
T ss_dssp HHHHHHHHTCCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHH
Confidence 36777888899999999876554443
No 7
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.65 E-value=1.6e+02 Score=21.04 Aligned_cols=29 Identities=14% Similarity=-0.059 Sum_probs=21.5
Q ss_pred hHHHHHhhcccCCCCchHHHHHHhhcCCh
Q psy15185 34 SQYELCKKKRVPILNYPDSMRVALQQGPP 62 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 62 (611)
-|+..+++++.|.|+|..+.+.-+.++..
T Consensus 38 VA~lWG~~Knk~~MnYeklSRaLRyyY~~ 66 (86)
T d1duxc_ 38 VARLWGLRKNKTNMNYDKLSRALRYYYDK 66 (86)
T ss_dssp HHHHHHHTTTCSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHhc
Confidence 36677788899999999887665555443
No 8
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.99 E-value=1.4e+02 Score=21.36 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.3
Q ss_pred hhcccCCCCchHHHHHHhhcCCh
Q psy15185 40 KKKRVPILNYPDSMRVALQQGPP 62 (611)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~p~ 62 (611)
|+...|.++|+++...|.+..|.
T Consensus 1 ~~n~~~~~SY~~LI~~Ai~~sp~ 23 (85)
T d3bpya1 1 RRNAWGNQSYAELISQAIESAPE 23 (85)
T ss_dssp CCBTTBSCCHHHHHHHHHHHSTT
T ss_pred CCCCCCCcCHHHHHHHHHHhCCC
Confidence 35667889999999999998885
No 9
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.45 E-value=4.6e+02 Score=20.12 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=24.8
Q ss_pred HHHHHhhcccCCCCchHH-HHHHhhcCChhhhhhhhhhhHHHHHHHHHHHH
Q psy15185 35 QYELCKKKRVPILNYPDS-MRVALQQGPPCLRFAANASAIIVDMFLIVYQL 84 (611)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~r~~~~~~~~~v~~~~~~~~~ 84 (611)
+.+..|.+++-..+||+. ....++ ...|.++|..++..-+.+...-+
T Consensus 27 s~~Vg~aR~k~~v~~p~~~g~~~f~---ra~RaH~N~~E~~p~~L~~l~~~ 74 (139)
T d2q7ra1 27 AHKVEHESRTQNGRSFQRTGTLAFE---RVYTANQNCVDAYPTFLAVLWSA 74 (139)
T ss_dssp HHHHHHHHHHSCCSSCCSCCCHHHH---HHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCHHHH---HHHHHHhhhHhhHHHHHHHHHHH
Confidence 444555555555566642 111111 25688889888766554444333
No 10
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.07 E-value=2.8e+02 Score=20.66 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=21.9
Q ss_pred hHHHHHhhcccCCCCchHHHHHHhhcCCh
Q psy15185 34 SQYELCKKKRVPILNYPDSMRVALQQGPP 62 (611)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 62 (611)
-|+..+++++.|.|+|....+.=+-++..
T Consensus 37 VA~lWG~~Knk~~M~YeklSRaLRyYY~~ 65 (110)
T d1awca_ 37 VAQKWGQRKNKPTMNYEKLSRALRYYYDG 65 (110)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHGGGGS
T ss_pred HHHHHHHhhCCCcccHHHHHHHHHHHHhc
Confidence 36777888899999999876666655544
Done!