RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15185
(611 letters)
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 136 bits (345), Expect = 4e-35
Identities = 66/290 (22%), Positives = 136/290 (46%), Gaps = 17/290 (5%)
Query: 129 HATTNNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYE 188
+ + + +L+K +G G+L++P AF G + G + +++G++ Y LH+LV+
Sbjct: 1 GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60
Query: 189 LCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATN 248
+ K K +Y D +++ ++V G+C Y++F N
Sbjct: 61 VDKVKGKRRKSYGDLGYRLF----------GPKGKLLILFAILVNLFGVCISYLIFAGDN 110
Query: 249 IKPVTDAYIAVMDVRIV--MVLLLLPLIGINSIRNLKLLAPFSQLANVITFIGLGITMY- 305
+ + D++ + +V +++ L I ++ I NL L+ S +A V + + + +
Sbjct: 111 LPAIFDSFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSV 170
Query: 306 --YICQALPPVSSR--PYFGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPASFGGYYG 361
V S L IG +FA E V++ ++N MK+P+ F
Sbjct: 171 AELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTK 230
Query: 362 VLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIIGIVLAVLV 411
VL + + ++Y+++G +GY+ +G+ +G++ LNLPK D + + +L+
Sbjct: 231 VLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLL 280
Score = 79.6 bits (197), Expect = 7e-16
Identities = 47/211 (22%), Positives = 94/211 (44%), Gaps = 18/211 (8%)
Query: 402 IIGIVLAVL--VPRLEL--FISLFGAFCLSALGIAFPGIIEMCVLWPDQFGPFKFILIRD 457
I G++ L +P L +SL A + I + E+ VL G
Sbjct: 132 IFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQGVGSLGAKT--- 188
Query: 458 ILLIIGGIFALILGTFISLQDIVRSFKLDLSMNYVIALENNMKTPASFGGYYGVLNQGMF 517
+ F+++ IV +F+ ++ ++N MK+P+ F VL +
Sbjct: 189 --------NIKLARLFLAIGIIVFAFE---GHAVLLPIQNTMKSPSKFKAMTKVLLTAII 237
Query: 518 AIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDILAQSVNAIFAVAIFISYGLQCYVPVE 577
+ ++Y+++G +GY+ +G+ +G++ LNLPK D L N + + + +SY LQ + +
Sbjct: 238 IVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQ 297
Query: 578 IIWSRYLKQHLENATPGKKLLVEYIMRVSVV 608
I+ + ++ K L+ ++R +V
Sbjct: 298 IVENLLFRKGASGKHNPKSKLLRVVIRSGLV 328
Score = 51.1 bits (123), Expect = 1e-06
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 1 MPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDSMRVALQQG 60
+P AF G + G + +++G++ Y LH+LV+ + K K +Y D
Sbjct: 24 LPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGKRRKSYGDLGYRLF--- 80
Query: 61 PPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIK 99
+++ ++V G+C Y++F N+
Sbjct: 81 -------GPKGKLLILFAILVNLFGVCISYLIFAGDNLP 112
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 67.3 bits (165), Expect = 7e-12
Identities = 65/354 (18%), Positives = 127/354 (35%), Gaps = 32/354 (9%)
Query: 140 LLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILN 199
L ++G G+L +P AF G G + I+ L L +L+ E +
Sbjct: 18 LAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLL----EALLSSPNGKAS 73
Query: 200 YPDSMRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVATNIK--PVTDAYI 257
+ L G I++ + G+ YI+ + + +
Sbjct: 74 ITSLVEDYL--GKK--------GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL 123
Query: 258 AVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVITFIGLGITMYYICQALPPVSSR 317
+ ++ ++ L L ++ + L +L S L + + +Y I P
Sbjct: 124 NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFA 183
Query: 318 PYFGDPRNWN---LFIGTTLFALEAVGVVIALENNMKTPASFGGYYGVLNQGMFAIVIMY 374
W L I +F+ G + +L N M+ S + G +++Y
Sbjct: 184 LPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN-SKKAVRKAILIGSLIALVLY 242
Query: 375 VIMGFLGYVKYGSAAQGSVTLNLPKEDIIGIVLA--VLVPRLELFISLFGAFCL--SALG 430
+++GF + +GS G++ + + LA + P L + +++F F + S LG
Sbjct: 243 ILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLG 302
Query: 431 I---AFPGIIEMCVLWPDQFGPFK-----FILIRDILLIIGGIFALILGTFISL 476
+ F G+ ++ + G K F+ L+ FA+ LG L
Sbjct: 303 VYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGL 356
>gnl|CDD|204415 pfam10212, TTKRSYEDQ, Predicted coiled-coil domain-containing
protein. This is the C-terminal 500 amino acids of a
family of proteins with a predicted coiled-coil domain
conserved from nematodes to humans. It carries a
characteristic TTKRSYEDQ sequence-motif. The function is
not known.
Length = 518
Score = 33.0 bits (75), Expect = 0.54
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 105 YFSSNKQPLDDSTPYDP--HKHRVLEHATTNNETLIHLLKGSL 145
Y S K+P +S PY RVL +T + E L ++ SL
Sbjct: 273 YMKSLKKPCPESVPYSEALANRRVLLSSTESREGLAQQVQQSL 315
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
Length = 467
Score = 32.1 bits (73), Expect = 0.83
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 20/156 (12%)
Query: 329 FIGTTLFALEAVGVVIALENNMKTPASFGGYYGVLNQ--------GMFAIVIMYVIMGF- 379
F G F G V+ + + + PA G+ GVL + GM +Y ++G+
Sbjct: 310 FFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD 369
Query: 380 LGYVKYGSAAQGSVTLNLPKEDIIGIVLAVLVPRLELFISLFGAFCLSALGIAFPGIIEM 439
V + VTL+ ++ ++ + +P++ + G+ LG P ++ M
Sbjct: 370 ARKVAFWKHCIAVVTLS-----VVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFM 424
Query: 440 C---VLWPDQFGPFKFILIRDILLIIGGIFALILGT 472
W + GPF + I +++I G+ A++ GT
Sbjct: 425 YSGGFTW-QKVGPFYY--ISTYVVLITGVIAIVFGT 457
Score = 31.8 bits (72), Expect = 1.2
Identities = 68/308 (22%), Positives = 118/308 (38%), Gaps = 40/308 (12%)
Query: 144 SLGTGILAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPDS 203
++G GI+ +P+A +SGLV+ + I+I + + ++ L + I Y
Sbjct: 73 TVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALG------VAADKTNIRTYEGV 126
Query: 204 MRVALQQGPPCLRFAANASAIIVDMFLIVYQLGICCVYIMFVA---------TNIKPVTD 254
RV L GP + A A + C Y++ V TN
Sbjct: 127 ARVLL--GPWGSYYVAATRAF--------HGFSACVAYVISVGDILSATLKGTNAPDFLK 176
Query: 255 AYIAVMDVRIVMVL-LLLPLIGINSIRNLKLLAPFSQLANVITFIGLGITMYYICQALPP 313
+ +M L +LPL+ I +L+ ++ + + + ++ + I ++ LP
Sbjct: 177 QKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIA--VSFMVYLVIVIVVHSCMNGLPE 234
Query: 314 VSSRPYFGDPRNWNLFI---------GTTLFALEAVGVVIALENNMK-TPASFGGYYGVL 363
G N + + G +F V + A E M T S G +
Sbjct: 235 NIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAS 294
Query: 364 NQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIIGIVLAVLVPRLELFIS--LF 421
M MYV+ F GY+ +G GSV L + I++ + ++LF+S L
Sbjct: 295 TIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALL 354
Query: 422 GAFCLSAL 429
G C +AL
Sbjct: 355 GMACRNAL 362
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 31.5 bits (72), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 14/59 (23%)
Query: 91 IMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHKHRVLEH----ATTNNETLIHLLKGSL 145
+ F+ + KP+++YYF +K+ HK VLE+ A N+ + HLL +L
Sbjct: 359 LEFINSRPKPLALYYFGEDKR----------HKELVLENTSSGAVVINDCVFHLLNPNL 407
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 29.4 bits (66), Expect = 6.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 237 ICCVYIMFVATNIK---PVTDAYIAVMDVR 263
+CC+ + A IK P TD I MD+R
Sbjct: 382 VCCMVSLKQAQLIKERYPDTDVTIYYMDIR 411
>gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.
Length = 402
Score = 29.1 bits (66), Expect = 7.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 402 IIGIVLAVLVPRLELFISLFGAFCLSAL 429
++GI+LA+L P + L G + AL
Sbjct: 25 VLGILLALLSPPAAEAVGLLGTLFVGAL 52
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.1 bits (66), Expect = 8.0
Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 28/134 (20%)
Query: 362 VLNQGMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDIIGIVLAVLVPR-------- 413
L Q + ++++ +++ LG + I G+VL +L
Sbjct: 478 FLAQLGWLLILLGILLIVLGGFGLVVGLGPLGLIGKYLI-IGGVVLIILGEGIDGKSLGG 536
Query: 414 ----LELF--ISLFG---------AFCLSALGIAFPGIIEMCVLWPDQFGPFKFIL-IRD 457
L L+ G A L+ GIA M L P G I+ I
Sbjct: 537 ALGGLGLYEITGYLGDVLSYARLMALGLAGAGIAM-AFNLMAGLLPPSIGVIGIIVGI-- 593
Query: 458 ILLIIGGIFALILG 471
I+ I G + + L
Sbjct: 594 IIFIFGHLLNIALS 607
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 28.7 bits (65), Expect = 9.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 454 LIRDILLIIGGIFALILGTFISLQDIV-RSF 483
L++ L + G+FA I+G F +L IV SF
Sbjct: 60 LVKKTLYV--GVFAYIIGNFNNLARIVFESF 88
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter. The Ammonium Transporter
(Amt) Family (TC 2.A.49) All functionally characterized
members of the Amt family are ammonia or ammonium uptake
transporters. Some, but not others, also transport
methylammonium. The mechanism of energy coupling, if
any, to methyl-NH2 or NH3 uptake by the AmtB protein of
E. coli is not entirely clear. NH4+ uniport driven by
the pmf, energy independent NH3 facilitation, and
NH4+/K+ antiport have been proposed as possible
transport mechanisms. In Corynebacterium glutamicum and
Arabidopsis thaliana, uptake via the Amt1 homologues of
AmtB has been reported to be driven by the pmf
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 403
Score = 28.8 bits (65), Expect = 9.4
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 320 FGDPRNWNLFIGTTLFALEAVGVVIALENNMKTPASFGGYYGVLNQGMFAIV 371
FG+ N FIGT F L+ + P L Q MFA +
Sbjct: 58 FGEDNPINGFIGTGGFGLKNFLYPGKISLAGTLPD----LLFFLFQMMFAAI 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.145 0.438
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,221,253
Number of extensions: 3350361
Number of successful extensions: 5037
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4953
Number of HSP's successfully gapped: 223
Length of query: 611
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 508
Effective length of database: 6,369,140
Effective search space: 3235523120
Effective search space used: 3235523120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (27.7 bits)