RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15185
(611 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 2e-05
Identities = 81/593 (13%), Positives = 158/593 (26%), Gaps = 220/593 (37%)
Query: 34 SQYELCKKKRVPIL-----------NYPDSMRVAL---------QQGPPCLRFAANASAI 73
+++ K + + + D + L +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-----TLR 66
Query: 74 IVDMFLIVYQLGICCVYIMFVATNIKPVSIYYF------SSNKQPLDDSTPY-------- 119
+ L Q + FV ++ Y F + +QP + Y
Sbjct: 67 LFWTLL-SKQEEM---VQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 120 -DPH---KHRV--LEHATTNNETLIHL-------LKGSLGTG--ILA------------M 152
D K+ V L+ + L+ L + G LG+G +A M
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 153 PNA-F-VNSGLVIGTVGTILIGILCTYCLHVLVRSQYELCKKKRVPILNYPD-----SMR 205
F +N + T+L +L + + + L
Sbjct: 181 DFKIFWLNLKNC-NSPETVLE-MLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 206 VALQQGPPCLRFAAN-ASAIIVDMFLIVYQLGICCVYIMFVATNIKPVTDAYIAVMDVRI 264
+ + CL N +A + F + C + + T K VTD A I
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAF------NLSCK--ILLTTRFKQVTDFLSAATTTHI 289
Query: 265 VMVLLLLPLIGINSIRNLKLLAPFSQLANVITFIGLGITMYYICQALPPVSSRPYFGDPR 324
+ + L LL + L Q LP +P
Sbjct: 290 SLDHHSMTLTPDEV---KSLLLKY-----------LDCR----PQDLPREVLT---TNP- 327
Query: 325 NWNLFIGTTLFALEAVGVVIALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGYVK 384
+ + A + + + T K
Sbjct: 328 ---RRLS--IIAES-------IRDGLAT---------------------------WDNWK 348
Query: 385 YGSAAQGSVTLNLPK-EDIIGIVLAVLVPRL--ELFISLFGAFCLSALGIAFP---GIIE 438
+ +N K II L VL P ++F L + FP I
Sbjct: 349 H---------VNCDKLTTIIESSLNVLEPAEYRKMFDRLS---------V-FPPSAHIPT 389
Query: 439 --MCVLWPDQFGPFKFILIRDILLIIGGI--FALILG----TFISLQDIVRSFKL----D 486
+ ++W D ++ D+++++ + ++L+ + IS+ I K+ +
Sbjct: 390 ILLSLIWFD-------VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 487 LSMN------YVI--ALENNMKTPASFGGYYGVLNQGMFAIVIMYVIMGFLGY 531
+++ Y I +++ P Y+ Y +G+
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-------------Y---SHIGH 479
Score = 29.8 bits (66), Expect = 3.7
Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 28/144 (19%)
Query: 476 LQDIVRSFKLDLSMNYVIALENNMKTPASFGGYYGVLNQG--------MFAIVIMY---V 524
L +F + V ++ K+ S ++ +F ++ +
Sbjct: 22 LSVFEDAFVDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 525 IMGFLGYV---KYG---SAAQGSVTLNLPKEDILAQSVNAIF-AVAIFISYGLQCYVP-V 576
+ F+ V Y S + + + + ++ +F Y V +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY----NVSRL 134
Query: 577 EIIWSRYLKQHLENATPGKKLLVE 600
+ L+Q L P K +L++
Sbjct: 135 QPYLK--LRQALLELRPAKNVLID 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-04
Identities = 74/401 (18%), Positives = 107/401 (26%), Gaps = 153/401 (38%)
Query: 241 YIMFVATNIKP-VTDAYIAVMDVRIVMVLLLLP------LIGINSIRNL--KLLAPFSQL 291
++ +V++ ++P + V + L L L G N I L KLL
Sbjct: 64 FLGYVSSLVEPSKVGQFDQV-------LNLCLTEFENCYLEG-NDIHALAAKLLQENDTT 115
Query: 292 ANVITFIGLGITMYYICQALPPVSSRPYFGDPRNWNLFIGTTLFALEAVGVVIALENNMK 351
+ I Y A ++ RP+ + LF A E N +
Sbjct: 116 LVKTKEL---IKNYI--TARI-MAKRPFDKKSNS-------ALF--RA-----VGEGNAQ 155
Query: 352 TPASFGGYYGVLNQGMFAIVIMYVIMGF-----LGYVKYGSAAQGSVTLNLPKEDIIGIV 406
A FGG QG Y F L Y Y D+I
Sbjct: 156 LVAIFGG------QG---NTDDY----FEELRDL-YQTYHVLV----------GDLIKFS 191
Query: 407 LAVLVPRLELFISLFGAFCLSALGIAFPGIIEMCVLW-------PDQ----FGPFKFILI 455
L + + F G+ + W PD+ P LI
Sbjct: 192 AETLSELIRTTLDAEKVF---TQGLNI-------LEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 456 RDILLIIGGIFALILGTFISLQDIVRSFKLDLSMNYVIALENNMKTPASFGGYY-GVLNQ 514
G+ L +YV+ + TP Y G
Sbjct: 242 --------GVIQLA--------------------HYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 515 GMFAIVIMYVIMGFLGYVKYGSAAQGSVTLNLPKEDILAQSVNAIFAVAIFISYGLQCY- 573
+V I A S E AI V FI G++CY
Sbjct: 274 SQ-GLVTAVAI-----------AETDS------WESFFVSVRKAI-TVLFFI--GVRCYE 312
Query: 574 -VPVEIIWSRYLKQHLEN----ATPGKKLLVEYIMRVSVVG 609
P + L+ LEN +P M +S+
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSP---------M-LSISN 343
Score = 40.4 bits (94), Expect = 0.002
Identities = 82/537 (15%), Positives = 150/537 (27%), Gaps = 193/537 (35%)
Query: 29 HVLVRSQYELCKKKRVPILNYPDSMRVALQQGPPCLRFAANASAIIVDMF---------- 78
L+++ + P +S AL R +A +V +F
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNS---AL------FRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 79 --L-IVYQLGICCVYIMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHK---HRVLEHATT 132
L +YQ Y + V IK + + LD + LE+ +
Sbjct: 171 EELRDLYQ-----TYHVLVGDLIKFSAETLSELIRTTLDAEKVF-TQGLNILEWLENPSN 224
Query: 133 --NNETLIHLLKGSLGTGILAMPNAFVNSGLVIGTVGTILIGI--LCTYCLHVLVRSQYE 188
+ + L+ + ++ P LIG+ L Y +
Sbjct: 225 TPDKDYLLSIP--------ISCP----------------LIGVIQLAHYVV--------- 251
Query: 189 LCKKKRVPILNY-PDSMRVALQQGPPCLR----------------FAANASAIIVDMFLI 231
K +L + P +R L+ + F + I +F I
Sbjct: 252 TAK-----LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 232 VYQLGICCVYIMFVATNIKP--VTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFS 289
G+ C Y + T++ P + D+ V M+ SI NL
Sbjct: 307 ----GVRC-YEAYPNTSLPPSILEDSLENNEGVPSPML----------SISNL----TQE 347
Query: 290 QLANVITFIGLGITMYYICQALPPVSSRPYFG---DPRNWNLFI--GTTLFALEAVGVVI 344
Q+ + + LP + +N + G +L G+ +
Sbjct: 348 QVQDYVN---------KTNSHLPA-GKQVEISLVNGAKN---LVVSGPPQ-SLY--GLNL 391
Query: 345 ALENNMKTPASFGGYYGVLNQGMFAIVIMY------VIMGFLGYV------KYGSAAQGS 392
L K P+ L+Q I + FL V A
Sbjct: 392 TLR-KAKAPSG-------LDQSR----IPFSERKLKFSNRFLP-VASPFHSHLLVPASDL 438
Query: 393 VTLNLPKEDIIGIVLAVLVPRLELFISLF----GA----FCLSALGIAFPGIIEMCVLWP 444
+ +L K ++ ++ I ++ G+ S II + V W
Sbjct: 439 INKDLVKNNV-------SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 445 DQ----------FGPFKFILIRDILLIIGGIFALIL-GTFISLQDIVRSFKLDLSMN 490
FGP +G + GT + ++ + LD++ +
Sbjct: 492 TTTQFKATHILDFGP-------GGASGLGVLTHRNKDGTGVR---VIVAGTLDINPD 538
Score = 40.0 bits (93), Expect = 0.003
Identities = 70/387 (18%), Positives = 119/387 (30%), Gaps = 129/387 (33%)
Query: 19 LIGI--LCTYCLHVLVRSQYELCKKKRVPILNY-PDSMRVALQQGPPCLR---------- 65
LIG+ L Y + K +L + P +R L+ +
Sbjct: 240 LIGVIQLAHYVV---------TAK-----LLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 66 ------FAANASAIIVDMFLIVYQLGICCVYIMFVATNIKPVSIYYFSSN--KQPLDDST 117
F + I +F I G+ C Y + T++ P + N P +
Sbjct: 286 TDSWESFFVSVRKAITVLFFI----GVRC-YEAYPNTSLPPSILEDSLENNEGVP----S 336
Query: 118 P----YDPHKHRVLEHATTNNETL-----IHLLKGSLGTGILAMPNAFVNSGLVIGTVGT 168
P + + +V ++ N L + + SL G V SG
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---SLVNG----AKNLVVSGPPQS---- 385
Query: 169 ILIGILCTYCLHVLVRSQYELCKK---KRVPILNYPDSMR---VALQQGP---PCLRFAA 219
L G L S + + +R S R VA P L A
Sbjct: 386 -LYG-LNLTLRKAKAPSGLDQSRIPFSERKLKF----SNRFLPVAS---PFHSHLLVPA- 435
Query: 220 NASAIIVDM----FLI-VYQLGICCVYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLI 274
+ I D+ + I VY F ++++ ++ + RIV ++ LP+
Sbjct: 436 -SDLINKDLVKNNVSFNAKDIQI-PVYDTFDGSDLRVLSGSISE----RIVDCIIRLPV- 488
Query: 275 GINSIRNLKLLAPFSQLANVITFIGLGITMYYICQALPPVSSRPYFGDPRNWNLFIGTTL 334
+ F +++ F G G L ++ RN + GT
Sbjct: 489 ------KWETTTQFKAT-HILDF-GPGGA-----SGLGVLTH-------RNKD---GT-- 523
Query: 335 FALEAVGVVIA--LENNMKTPASFGGY 359
V V++A L+ N P G+
Sbjct: 524 ----GVRVIVAGTLDIN---PDDDYGF 543
Score = 38.1 bits (88), Expect = 0.009
Identities = 30/174 (17%), Positives = 44/174 (25%), Gaps = 67/174 (38%)
Query: 451 KFILIRDILLIIGGIFALILGTFISLQDIVRSFKLDLSMNYVIALENNMKTPA-SFGGYY 509
+D+ F G S+ DIV NN FGG
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYG--FSILDIVI---------------NNPVNLTIHFGGEK 1680
Query: 510 GVLNQGMFAIVIMYVIMGFLGYVKYGSAAQ---GSVTLNLPK------EDILAQSVN--- 557
G I Y M F V + + + + +L+ +
Sbjct: 1681 GK------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 558 AIFAV--AIFISYGLQCYVPVEIIWSRYLKQ-------H-LENATPGKKLLVEY 601
A+ + A F E + S+ L H L G EY
Sbjct: 1735 ALTLMEKAAF-----------EDLKSKGLIPADATFAGHSL-----G-----EY 1767
Score = 36.6 bits (84), Expect = 0.030
Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 51/206 (24%)
Query: 240 VYIMFVATNIKPVTDAYIAVMDVRIVMVLLLLPLIGINSIRNLKLLAPFSQLANVITFIG 299
+ I F K + + Y A M ++ ++ K+ ++ + TF
Sbjct: 1672 LTIHFGGEKGKRIRENYSA-MIFETIVD---------GKLKTEKIFKEINEHSTSYTFRS 1721
Query: 300 ----LGITMYYICQ-ALPPVSSRPY--FGDPRNWNLFIGTTLF---------ALEAVGVV 343
L T + Q AL + F D ++ L F AL ++ V
Sbjct: 1722 EKGLLSATQF--TQPALTLME---KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 344 IALENNMK---------TPASFGGYYGVLNQGMFAIVIMYVIMGF-----LGYVKYGSAA 389
+++E+ ++ A G N GM AI V F V+
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 390 QGS----VTLNLPKEDII--GIVLAV 409
G V N+ + + G + A+
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRAL 1862
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 30.6 bits (70), Expect = 1.6
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 91 IMFVATNIKPVSIYYFSSNKQPLDDSTPYDPHKHRVLEH----ATTNNETLIHLLKGSL 145
I F+ KP+++Y FSSN + +++ N+ ++H+ SL
Sbjct: 368 IQFINQREKPLALYMFSSNDK----------VIKKMIAETSSGGVAANDVIVHITLHSL 416
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.8
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 6/22 (27%)
Query: 277 NSIR----NLKLLAPFS--QLA 292
+++ +LKL A S LA
Sbjct: 20 QALKKLQASLKLYADDSAPALA 41
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 28.5 bits (64), Expect = 7.1
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 312 PPVSSRPYFGDPRNWNL-------FIGTTLFALEAVGVVIALENNMKTPASFGGYYGVLN 364
PP + G+ + W+ FI T LF V VI S G
Sbjct: 44 PPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWA 103
Query: 365 QGMFAIVIM 373
G I ++
Sbjct: 104 FG-GMIFVL 111
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national
project on protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Length = 200
Score = 28.1 bits (62), Expect = 7.9
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 137 LIHLLKGSLGTGI----LAMPNAFVNSGLVIGTVGTILIGILCTYCLHVLVRSQYEL 189
++H+ +L + LA+ F S + + +++ I T + VL+ E+
Sbjct: 107 ILHVGAKTLEDAVKLVNLAVSCGFKYSNIKSISNKKLIVEIRSTERMDVLLGENGEI 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.145 0.438
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,513,633
Number of extensions: 601399
Number of successful extensions: 1175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1158
Number of HSP's successfully gapped: 25
Length of query: 611
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 512
Effective length of database: 3,937,614
Effective search space: 2016058368
Effective search space used: 2016058368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.1 bits)