RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15185
         (611 letters)



>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
          Length = 249

 Score = 27.4 bits (60), Expect = 4.3
 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 329 FIGTTLFALEAVGVVIALENNMKTPASFGGYYGVLNQGM-FAIVIMYVIMGF 379
           F+   LF   ++G  +     +K+  + G     +   + F + I  +    
Sbjct: 18  FLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSV 69


>d1em8b_ c.126.1.1 (B:) DNA polymerase III psi subunit {Escherichia
           coli [TaxId: 562]}
          Length = 110

 Score = 25.9 bits (57), Expect = 7.2
 Identities = 4/27 (14%), Positives = 10/27 (37%)

Query: 476 LQDIVRSFKLDLSMNYVIALENNMKTP 502
           + D++R+  +       +  E     P
Sbjct: 28  VSDVLRALTVSPDQVLQLTPEKIAMLP 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.145    0.438 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,291,477
Number of extensions: 109056
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 12
Length of query: 611
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 520
Effective length of database: 1,158,166
Effective search space: 602246320
Effective search space used: 602246320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.8 bits)