BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15186
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1
Length = 98
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/64 (95%), Positives = 63/64 (98%)
Query: 62 GSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLS 121
GSGQIQLWQFLLELLSDS NA+CITWEGTNGEFK+TDPDEVARRWGERKSKPNMNYDKLS
Sbjct: 2 GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 122 RALR 125
RALR
Sbjct: 62 RALR 65
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 1 MTKVHGKRYAYKFDFQGL 18
MTKVHGKRYAYKFDF G+
Sbjct: 73 MTKVHGKRYAYKFDFHGI 90
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
pdb|2YPR|B Chain B, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
Length = 102
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 60/67 (89%)
Query: 59 SSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYD 118
S GSGQIQLWQFLLELL+D NA CI WEG +GEFKLTDPDEVARRWGERKSKPNMNYD
Sbjct: 1 SMKGSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYD 60
Query: 119 KLSRALR 125
KLSRALR
Sbjct: 61 KLSRALR 67
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Query: 1 MTKVHGKRYAYKFDFQGL 18
M+KVHGKRYAY+FDFQGL
Sbjct: 75 MSKVHGKRYAYRFDFQGL 92
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 53 SAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSK 112
AA + TGSG IQLWQFLLELL+D ++ + I+W G EFKL+DPDEVARRWG+RK+K
Sbjct: 52 PAAALAGYTGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNK 111
Query: 113 PNMNYDKLSRALR 125
P MNY+KLSR LR
Sbjct: 112 PKMNYEKLSRGLR 124
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 53 SAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSK 112
AA + TGSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+K
Sbjct: 44 PAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNK 103
Query: 113 PNMNYDKLSRALR 125
P MNY+KLSR LR
Sbjct: 104 PKMNYEKLSRGLR 116
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 53 SAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSK 112
AA + TGSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+K
Sbjct: 43 PAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNK 102
Query: 113 PNMNYDKLSRALR 125
P MNY+KLSR LR
Sbjct: 103 PKMNYEKLSRGLR 115
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 58/74 (78%)
Query: 54 AAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKP 113
AA + TGSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+KP
Sbjct: 4 AAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKP 63
Query: 114 NMNYDKLSRALRTH 127
MNY+KLSR LR +
Sbjct: 64 KMNYEKLSRGLRYY 77
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 53 SAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSK 112
AA + TGSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+K
Sbjct: 22 PAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNK 81
Query: 113 PNMNYDKLSRALR 125
P MNY+KLSR LR
Sbjct: 82 PKMNYEKLSRGLR 94
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 53 SAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSK 112
AA + TGSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+K
Sbjct: 43 PAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNK 102
Query: 113 PNMNYDKLSRALR 125
P MNY+KLSR LR
Sbjct: 103 PKMNYEKLSRGLR 115
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 53 SAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSK 112
AA + TGSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+K
Sbjct: 23 PAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNK 82
Query: 113 PNMNYDKLSRALR 125
P MNY+KLSR LR
Sbjct: 83 PKMNYEKLSRGLR 95
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 53 SAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSK 112
AA + TGSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+K
Sbjct: 27 PAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNK 86
Query: 113 PNMNYDKLSRALR 125
P MNY+KLSR LR
Sbjct: 87 PKMNYEKLSRGLR 99
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 53/64 (82%)
Query: 62 GSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLS 121
GSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+KP MNY+KLS
Sbjct: 1 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLS 60
Query: 122 RALR 125
R LR
Sbjct: 61 RGLR 64
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 110
Score = 92.8 bits (229), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 50/62 (80%)
Query: 66 IQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALR 125
IQLWQFLLELL+D +CI+W G GEFKL P+ VA++WG+RK+KP MNY+KLSRALR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 126 TH 127
+
Sbjct: 61 YY 62
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1
Complexed With Dna
Length = 106
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%)
Query: 59 SSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYD 118
+S G +QLWQFL+ LL D +N++ I W G EFKL +P+EVARRWG +K++P MNYD
Sbjct: 5 TSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYD 64
Query: 119 KLSRALRTH 127
KLSR+LR +
Sbjct: 65 KLSRSLRYY 73
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
Length = 94
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 66 IQLWQFLLELLSDSTNANCITWEGTNG-EFKLTDPDEVARRWGERKSKPNMNYDKLSRAL 124
+ LWQFLL+LL + N + I+W +G EFKL D +EVAR WG RK+K NMNYDKLSRAL
Sbjct: 5 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 64
Query: 125 RTH 127
R +
Sbjct: 65 RYY 67
>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA
Complex
pdb|1BC8|C Chain C, Structures Of Sap-1 Bound To Dna Sequences From The E74
And C-Fos Promoters Provide Insights Into How Ets
Proteins Discriminate Between Related Dna Targets
pdb|1K6O|A Chain A, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 93
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 35/47 (74%)
Query: 81 NANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTH 127
N + I W +G+FKL +EVAR WG RK+KPNMNYDKLSRALR +
Sbjct: 20 NKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYY 66
>pdb|1YO5|C Chain C, Analysis Of The 2.0a Crystal Structure Of The Protein-Dna
Complex Of Human Pdef Ets Domain Bound To The Prostate
Specific Antigen Regulatory Site
Length = 97
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 56 GIQSSTGSGQIQLWQFLLELL-SDSTNANCITW-EGTNGEFKLTDPDEVARRWGERKSKP 113
G + GS I LWQFL ELL + I W G FK+ D +VAR WG RK++P
Sbjct: 1 GSLDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRP 60
Query: 114 NMNYDKLSRALRTHSRR--LRKIFIPGLGNIDKEIVYFF 150
MNYDKLSR++R + ++ +RK +I + +VY F
Sbjct: 61 AMNYDKLSRSIRQYYKKGIIRK------PDISQRLVYQF 93
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 34/45 (75%)
Query: 81 NANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALR 125
N + I W +G+FKL +EVAR WG RK+KPNMNYDKLSRALR
Sbjct: 21 NKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 65
>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor
Etv6 Protein
Length = 118
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 59 SSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGE-FKLTDPDEVARRWGERKSKPNMNY 117
SS SG LW ++ +LLSDS N I WE + F++ DP+ +AR WG K++ NM Y
Sbjct: 2 SSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTY 61
Query: 118 DKLSRALR 125
+K+SRALR
Sbjct: 62 EKMSRALR 69
>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To Q436
Length = 106
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 62 GSGQIQLWQFLLELLSDSTNANCITWEGTNGE-FKLTDPDEVARRWGERKSKPNMNYDKL 120
GS LW ++ +LLSDS N I WE + F++ DP+ +AR WG K++ NM Y+K+
Sbjct: 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 121 SRALR 125
SRALR
Sbjct: 61 SRALR 65
>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To R458
Length = 128
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 62 GSGQIQLWQFLLELLSDSTNANCITWEGTNGE-FKLTDPDEVARRWGERKSKPNMNYDKL 120
GS LW ++ +LLSDS N I WE + F++ DP+ +AR WG K++ NM Y+K+
Sbjct: 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 121 SRALR 125
SRALR
Sbjct: 61 SRALR 65
>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain
Transcription Factor
Length = 107
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 67 QLWQFLLELL-SDSTNANCITWEG-TNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRAL 124
LW+F+ +LL S N + WE G F++ + +A+ WG+RK M Y+KLSRAL
Sbjct: 10 HLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRAL 69
Query: 125 RTHSRRLRKIFIPGLGNIDKEIVYFF 150
R + + L +D+ +VY F
Sbjct: 70 RYYYK------TGILERVDRRLVYKF 89
>pdb|3JTG|A Chain A, Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding
Domai Complex With Type Ii Tgf-Beta Receptor Promoter
Dna
Length = 103
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 67 QLWQFLLELL-SDSTNANCITWEGTN-GEFKLTDPDEVARRWGERKSKPNMNYDKLSRAL 124
LW+F+ ++L N + WE + G FK + VA+ WG++K NM Y+KLSRA+
Sbjct: 6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAM 65
Query: 125 RTHSRR 130
R + +R
Sbjct: 66 RYYYKR 71
>pdb|1PUE|E Chain E, Pu.1 Ets Domain-Dna Complex
pdb|1PUE|F Chain F, Pu.1 Ets Domain-Dna Complex
Length = 89
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 65 QIQLWQFLLELLSDSTNANCITW-EGTNGEFKLTD--PDEVARRWGERK-SKPNMNYDKL 120
+I+L+QFLL+LL + I W + G F+ + + +A RWG +K ++ M Y+K+
Sbjct: 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 121 SRALRTHSR 129
+RALR + +
Sbjct: 61 ARALRNYGK 69
>pdb|2KK4|A Chain A, Solution Nmr Structure Of Protein Af2094 From
Archaeoglobus Fulgidus. Northeast Structural Genomics
Consotium (Nesg) Target Gt2
Length = 95
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 92 GEFKLTDPDEVARRWGERKSKP 113
GEF + E+ R+W E KSKP
Sbjct: 56 GEFDEEEARELGRKWLEEKSKP 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,271,517
Number of Sequences: 62578
Number of extensions: 147913
Number of successful extensions: 359
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 44
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)