Query psy15186
Match_columns 151
No_of_seqs 168 out of 331
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:47:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fli_A FLI-1; transcription/DN 100.0 4.1E-41 1.4E-45 242.1 5.7 86 61-151 1-86 (98)
2 2ypr_A Protein FEV; transcript 100.0 6.3E-40 2.2E-44 237.7 7.0 86 60-150 2-87 (102)
3 1wwx_A E74-like factor 5 ESE-2 100.0 9.6E-40 3.3E-44 238.1 7.6 87 59-151 2-90 (107)
4 1bc8_C SAP-1, protein (SAP-1 E 100.0 9E-40 3.1E-44 233.2 7.2 84 63-151 2-85 (93)
5 1yo5_C SAM pointed domain cont 100.0 5.9E-40 2E-44 235.8 3.4 90 58-151 3-94 (97)
6 4avp_A ETS translocation varia 100.0 1E-38 3.5E-43 232.7 6.6 86 60-150 6-91 (106)
7 2dao_A Transcription factor ET 100.0 1.3E-38 4.5E-43 235.4 6.7 86 60-150 3-89 (118)
8 1awc_A Protein (GA binding pro 100.0 3.4E-38 1.2E-42 230.8 5.9 80 66-150 1-80 (110)
9 1gvj_A C-ETS-1 protein, P54; t 100.0 6.2E-38 2.1E-42 239.0 7.1 85 61-150 35-119 (146)
10 1pue_E Protein (transcription 100.0 5.9E-38 2E-42 222.4 5.7 81 65-151 1-85 (89)
11 2lf8_A Transcription factor ET 100.0 1.4E-38 4.8E-43 237.7 0.0 84 62-150 1-85 (128)
12 1hbx_G ETS-domain protein ELK- 100.0 2E-37 6.8E-42 237.9 5.5 83 63-150 3-85 (157)
13 2nny_A C-ETS-1 protein, P54; p 100.0 2.3E-37 7.8E-42 240.7 5.2 86 60-150 59-144 (171)
14 3jtg_A ETS-related transcripti 100.0 1.2E-36 4.2E-41 220.8 7.2 82 65-151 4-87 (103)
15 2ldu_A Heat shock factor prote 96.3 0.0025 8.6E-08 46.8 3.3 61 68-130 20-81 (125)
16 1hks_A Heat-shock transcriptio 96.1 0.0055 1.9E-07 43.5 4.0 59 71-130 10-68 (106)
17 3hts_B Heat shock transcriptio 95.6 0.014 4.8E-07 41.5 4.3 64 66-130 13-76 (102)
18 1awc_A Protein (GA binding pro 92.4 0.027 9.2E-07 40.8 0.2 15 1-15 68-82 (110)
19 2dao_A Transcription factor ET 90.9 0.053 1.8E-06 39.6 0.5 14 1-14 77-90 (118)
20 2lf8_A Transcription factor ET 89.9 0.05 1.7E-06 40.3 0.0 14 1-14 73-86 (128)
21 1hbx_G ETS-domain protein ELK- 88.0 0.11 3.8E-06 39.6 0.3 14 1-14 73-86 (157)
22 2irf_G IRF-2, interferon regul 80.0 4.9 0.00017 28.7 6.1 66 64-130 4-87 (113)
23 3qu6_A IRF3 protein; helix-tur 74.6 5.3 0.00018 28.8 5.0 65 65-130 8-89 (116)
24 2o61_A Transcription factor P6 67.2 7.2 0.00024 34.9 5.1 70 60-130 420-506 (540)
25 2dll_A Interferon regulatory f 58.8 5 0.00017 29.0 2.1 65 65-130 6-88 (121)
26 3qu3_A IRF-7, interferon regul 52.1 6.9 0.00024 29.0 2.0 66 64-130 11-104 (137)
27 2o61_A Transcription factor P6 48.2 36 0.0012 30.4 6.3 69 61-130 289-383 (540)
28 1knv_A BSE634I restriction end 32.7 46 0.0016 27.5 4.2 49 80-130 6-56 (293)
29 3imo_A Integron cassette prote 22.9 31 0.0011 25.3 1.3 13 3-15 85-97 (133)
No 1
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=4.1e-41 Score=242.10 Aligned_cols=86 Identities=76% Similarity=1.172 Sum_probs=79.1
Q ss_pred CCCCcchHHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCCC
Q psy15186 61 TGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGLG 140 (151)
Q Consensus 61 ~g~G~~~Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~~ 140 (151)
+|+|+++||+||++||+|+++.+||+|||++|||||+||++||+|||.+||+|+||||||||||||||+++++..|+ +
T Consensus 1 ~gsg~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY~k~i~~Kv~--g 78 (98)
T 1fli_A 1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVH--G 78 (98)
T ss_dssp CCCSSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCCCBG--G
T ss_pred CCCCceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHcCcEeecC--C
Confidence 48899999999999999999999999999899999999999999999999999999999999999999997543333 2
Q ss_pred CcccceeeecC
Q psy15186 141 NIDKEIVYFFR 151 (151)
Q Consensus 141 ~i~~~l~y~f~ 151 (151)
+|+||+|-
T Consensus 79 ---kr~vY~F~ 86 (98)
T 1fli_A 79 ---KRYAYKFD 86 (98)
T ss_dssp ---GSSBCCCC
T ss_pred ---CeEEEEec
Confidence 79999993
No 2
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=100.00 E-value=6.3e-40 Score=237.66 Aligned_cols=86 Identities=71% Similarity=1.122 Sum_probs=79.3
Q ss_pred CCCCCcchHHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCC
Q psy15186 60 STGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGL 139 (151)
Q Consensus 60 ~~g~G~~~Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~ 139 (151)
-+|+|+++|||||++||+|+++.+||+|++++|||+|+||++||+|||.+||||+||||||||||||||++++...|+
T Consensus 2 ~~g~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~-- 79 (102)
T 2ypr_A 2 MKGSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVH-- 79 (102)
T ss_dssp -CCCSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECS--
T ss_pred cCCCCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecC--
Confidence 368999999999999999999999999999899999999999999999999999999999999999999997554444
Q ss_pred CCcccceeeec
Q psy15186 140 GNIDKEIVYFF 150 (151)
Q Consensus 140 ~~i~~~l~y~f 150 (151)
| +|+||+|
T Consensus 80 G---kr~vYkF 87 (102)
T 2ypr_A 80 G---KRYAYRF 87 (102)
T ss_dssp S---CSSEEEE
T ss_pred C---CeEEEEe
Confidence 3 7999999
No 3
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=9.6e-40 Score=238.12 Aligned_cols=87 Identities=37% Similarity=0.702 Sum_probs=78.6
Q ss_pred cCCCCCcchHHHHHHHhcCCCC-CCCcccccC-CCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhcc
Q psy15186 59 SSTGSGQIQLWQFLLELLSDST-NANCITWEG-TNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFI 136 (151)
Q Consensus 59 s~~g~G~~~Lw~FLl~LL~d~~-~~~~I~W~~-~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~ 136 (151)
+++++|+++|||||++||.|++ +.+||+||+ .+|||||+||++||+|||.+||+|+||||||||||||||+++++
T Consensus 2 ~sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii--- 78 (107)
T 1wwx_A 2 SSGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGIL--- 78 (107)
T ss_dssp CCCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSE---
T ss_pred CCCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcE---
Confidence 4678999999999999999986 789999999 58999999999999999999999999999999999999999743
Q ss_pred CCCCCcccceeeecC
Q psy15186 137 PGLGNIDKEIVYFFR 151 (151)
Q Consensus 137 p~~~~i~~~l~y~f~ 151 (151)
.++.+|+||+|-
T Consensus 79 ---~Kv~~rlvY~F~ 90 (107)
T 1wwx_A 79 ---ERVDRRLVYKFG 90 (107)
T ss_dssp ---ECCSSSSEEEEC
T ss_pred ---EeccceEEEEeC
Confidence 344479999993
No 4
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=100.00 E-value=9e-40 Score=233.22 Aligned_cols=84 Identities=50% Similarity=0.822 Sum_probs=77.4
Q ss_pred CCcchHHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCc
Q psy15186 63 SGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGLGNI 142 (151)
Q Consensus 63 ~G~~~Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~~~i 142 (151)
.|+++||+||++||.|+++++||+|||++|||+++||++||+|||.+||+|+||||||||||||||++++...|+|
T Consensus 2 ~~~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g---- 77 (93)
T 1bc8_C 2 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNG---- 77 (93)
T ss_dssp CCCCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTT----
T ss_pred CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCC----
Confidence 4789999999999999999999999998899999999999999999999999999999999999999976544443
Q ss_pred ccceeeecC
Q psy15186 143 DKEIVYFFR 151 (151)
Q Consensus 143 ~~~l~y~f~ 151 (151)
||+||+|-
T Consensus 78 -~r~vY~F~ 85 (93)
T 1bc8_C 78 -QKFVYKFV 85 (93)
T ss_dssp -STTEEEET
T ss_pred -CeEEEEeC
Confidence 79999993
No 5
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=5.9e-40 Score=235.75 Aligned_cols=90 Identities=42% Similarity=0.683 Sum_probs=75.5
Q ss_pred ccCCCCCcchHHHHHHHhcCCCC-CCCcccccC-CCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhc
Q psy15186 58 QSSTGSGQIQLWQFLLELLSDST-NANCITWEG-TNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIF 135 (151)
Q Consensus 58 ~s~~g~G~~~Lw~FLl~LL~d~~-~~~~I~W~~-~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~ 135 (151)
...+++|+++|||||++||+|++ +++||+||+ ++|||+|+||++||+|||.+||+|+||||||||||||||++++...
T Consensus 3 ~~~~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~~ii~K 82 (97)
T 1yo5_C 3 LDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRK 82 (97)
T ss_dssp ------CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEEC
T ss_pred cCCCCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEee
Confidence 34567889999999999999985 799999998 6899999999999999999999999999999999999999975433
Q ss_pred cCCCCCcccceeeecC
Q psy15186 136 IPGLGNIDKEIVYFFR 151 (151)
Q Consensus 136 ~p~~~~i~~~l~y~f~ 151 (151)
|+ +.||+||+|-
T Consensus 83 v~----~g~r~vY~F~ 94 (97)
T 1yo5_C 83 PD----ISQRLVYQFV 94 (97)
T ss_dssp CS----SCCTTEEEES
T ss_pred cc----CCcEEEEecC
Confidence 32 1279999993
No 6
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=100.00 E-value=1e-38 Score=232.72 Aligned_cols=86 Identities=50% Similarity=0.876 Sum_probs=76.3
Q ss_pred CCCCCcchHHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCC
Q psy15186 60 STGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGL 139 (151)
Q Consensus 60 ~~g~G~~~Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~ 139 (151)
..++|+++|||||++||+|+++++||+|||+++||+++||++||+|||.+||+++||||||||||||||++++...|+|
T Consensus 6 ~~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G- 84 (106)
T 4avp_A 6 SQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAG- 84 (106)
T ss_dssp -----CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTT-
T ss_pred CCCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCC-
Confidence 4678999999999999999999999999998899999999999999999999999999999999999999986544443
Q ss_pred CCcccceeeec
Q psy15186 140 GNIDKEIVYFF 150 (151)
Q Consensus 140 ~~i~~~l~y~f 150 (151)
+|+||+|
T Consensus 85 ----~r~vYkF 91 (106)
T 4avp_A 85 ----ERYVYKF 91 (106)
T ss_dssp ----CSSEEEE
T ss_pred ----CeEEEEe
Confidence 7999999
No 7
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=235.39 Aligned_cols=86 Identities=40% Similarity=0.712 Sum_probs=78.2
Q ss_pred CCCCCcchHHHHHHHhcCCCCCCCcccccC-CCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCC
Q psy15186 60 STGSGQIQLWQFLLELLSDSTNANCITWEG-TNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPG 138 (151)
Q Consensus 60 ~~g~G~~~Lw~FLl~LL~d~~~~~~I~W~~-~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~ 138 (151)
+.-+|.++||+||++||.|+++.+||+||+ ..|||||+||++||+|||.+||+|+||||||||||||||++++...|++
T Consensus 3 ~~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G 82 (118)
T 2dao_A 3 SGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPG 82 (118)
T ss_dssp CCCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSS
T ss_pred CccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccC
Confidence 455789999999999999999999999999 5689999999999999999999999999999999999999975544443
Q ss_pred CCCcccceeeec
Q psy15186 139 LGNIDKEIVYFF 150 (151)
Q Consensus 139 ~~~i~~~l~y~f 150 (151)
||+||+|
T Consensus 83 -----~r~vY~F 89 (118)
T 2dao_A 83 -----QRLLFRF 89 (118)
T ss_dssp -----SSSEEEE
T ss_pred -----CeEEEEe
Confidence 7999999
No 8
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=3.4e-38 Score=230.81 Aligned_cols=80 Identities=56% Similarity=0.990 Sum_probs=74.6
Q ss_pred chHHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCcccc
Q psy15186 66 IQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGLGNIDKE 145 (151)
Q Consensus 66 ~~Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~~~i~~~ 145 (151)
++|||||++||.|+++.+||+|||++|||+|+||++||+|||.+||+|+||||||||||||||++++...|+| +|
T Consensus 1 i~LwqFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~G-----kr 75 (110)
T 1awc_A 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQG-----KR 75 (110)
T ss_dssp CCHHHHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTT-----ST
T ss_pred CcHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccC-----Ce
Confidence 5899999999999999999999998899999999999999999999999999999999999999975544443 79
Q ss_pred eeeec
Q psy15186 146 IVYFF 150 (151)
Q Consensus 146 l~y~f 150 (151)
+||+|
T Consensus 76 lvY~F 80 (110)
T 1awc_A 76 FVYKF 80 (110)
T ss_dssp TEEEE
T ss_pred eEEec
Confidence 99999
No 9
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=100.00 E-value=6.2e-38 Score=239.00 Aligned_cols=85 Identities=60% Similarity=0.969 Sum_probs=79.1
Q ss_pred CCCCcchHHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCCC
Q psy15186 61 TGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGLG 140 (151)
Q Consensus 61 ~g~G~~~Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~~ 140 (151)
.++|+++||+||++||+|+++.+||+|+|+++||+++||++||+|||.+||+|+||||||||||||||++++...|+ +
T Consensus 35 ~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~--G 112 (146)
T 1gvj_A 35 TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTA--G 112 (146)
T ss_dssp HTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECT--T
T ss_pred CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecC--C
Confidence 57899999999999999999999999999999999999999999999999999999999999999999997554444 3
Q ss_pred Ccccceeeec
Q psy15186 141 NIDKEIVYFF 150 (151)
Q Consensus 141 ~i~~~l~y~f 150 (151)
+|+||+|
T Consensus 113 ---krlvY~F 119 (146)
T 1gvj_A 113 ---KRYVYRF 119 (146)
T ss_dssp ---SSSEEEE
T ss_pred ---CeEEEEe
Confidence 7999999
No 10
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=5.9e-38 Score=222.41 Aligned_cols=81 Identities=33% Similarity=0.703 Sum_probs=73.3
Q ss_pred cchHHHHHHHhcCCCCCCCcccccC-CCceEEec--ChHHHHHHhhccc-CCCCCcHHHHHHHHHHHHHhhhhhccCCCC
Q psy15186 65 QIQLWQFLLELLSDSTNANCITWEG-TNGEFKLT--DPDEVARRWGERK-SKPNMNYDKLSRALRTHSRRLRKIFIPGLG 140 (151)
Q Consensus 65 ~~~Lw~FLl~LL~d~~~~~~I~W~~-~~~~Fk~~--d~~~vArlWG~~k-~~~~m~YdklsRaLR~yy~k~~~~~~p~~~ 140 (151)
+++|||||++||+|+++.+||+||| .+|||+|+ ||++||+|||.+| |+|+||||||||||||||++++. .
T Consensus 1 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii------~ 74 (89)
T 1pue_E 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEV------K 74 (89)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSE------E
T ss_pred CccHHHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCce------e
Confidence 4789999999999999999999998 67999997 7999999999999 78999999999999999999754 3
Q ss_pred CcccceeeecC
Q psy15186 141 NIDKEIVYFFR 151 (151)
Q Consensus 141 ~i~~~l~y~f~ 151 (151)
++.+|+||+|-
T Consensus 75 Kv~~r~vY~F~ 85 (89)
T 1pue_E 75 KVKKKLTYQFS 85 (89)
T ss_dssp ECSSTTEEEEC
T ss_pred eccceEEEeec
Confidence 44469999993
No 11
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=100.00 E-value=1.4e-38 Score=237.66 Aligned_cols=84 Identities=39% Similarity=0.723 Sum_probs=78.0
Q ss_pred CCCcchHHHHHHHhcCCCCCCCcccccC-CCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCCC
Q psy15186 62 GSGQIQLWQFLLELLSDSTNANCITWEG-TNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGLG 140 (151)
Q Consensus 62 g~G~~~Lw~FLl~LL~d~~~~~~I~W~~-~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~~ 140 (151)
|+|+++|||||++||.|+++.+||+||| ..|||||+||++||+|||.+||+|+||||||||||||||++++...|+|
T Consensus 1 ~s~~~~LWqFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k~Ii~Kv~G-- 78 (128)
T 2lf8_A 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPG-- 78 (128)
Confidence 6789999999999999999999999999 5689999999999999999999999999999999999999986544443
Q ss_pred Ccccceeeec
Q psy15186 141 NIDKEIVYFF 150 (151)
Q Consensus 141 ~i~~~l~y~f 150 (151)
||+||+|
T Consensus 79 ---qrlvY~F 85 (128)
T 2lf8_A 79 ---QRLLFRF 85 (128)
Confidence 8999999
No 12
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=2e-37 Score=237.90 Aligned_cols=83 Identities=51% Similarity=0.840 Sum_probs=77.2
Q ss_pred CCcchHHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCc
Q psy15186 63 SGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGLGNI 142 (151)
Q Consensus 63 ~G~~~Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~~~i 142 (151)
.|+++||+||++||.|+++.+||+||+++|||||+||++||+|||.+||+|+||||||||||||||++++...|+|
T Consensus 3 ~~~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~G---- 78 (157)
T 1hbx_G 3 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNG---- 78 (157)
T ss_dssp CCCCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSS----
T ss_pred CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCC----
Confidence 5789999999999999999999999998899999999999999999999999999999999999999975544443
Q ss_pred ccceeeec
Q psy15186 143 DKEIVYFF 150 (151)
Q Consensus 143 ~~~l~y~f 150 (151)
||+||+|
T Consensus 79 -qrlvYkF 85 (157)
T 1hbx_G 79 -QKFVYKF 85 (157)
T ss_dssp -CTTEEEE
T ss_pred -CeEEEee
Confidence 8999999
No 13
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=100.00 E-value=2.3e-37 Score=240.75 Aligned_cols=86 Identities=59% Similarity=0.961 Sum_probs=79.4
Q ss_pred CCCCCcchHHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCC
Q psy15186 60 STGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGL 139 (151)
Q Consensus 60 ~~g~G~~~Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~ 139 (151)
..++|+++|||||++||.|+++.+||+|||+++||+++||++||||||.+||+++||||||||||||||++++...|+
T Consensus 59 ~~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~-- 136 (171)
T 2nny_A 59 YTGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTA-- 136 (171)
T ss_dssp HHTCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECT--
T ss_pred CCCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecC--
Confidence 357899999999999999999999999999999999999999999999999999999999999999999997554444
Q ss_pred CCcccceeeec
Q psy15186 140 GNIDKEIVYFF 150 (151)
Q Consensus 140 ~~i~~~l~y~f 150 (151)
+ ||+||+|
T Consensus 137 G---krlvY~F 144 (171)
T 2nny_A 137 G---KRYVYRF 144 (171)
T ss_dssp T---STTEEEE
T ss_pred C---CeEEEEe
Confidence 3 7999999
No 14
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=1.2e-36 Score=220.76 Aligned_cols=82 Identities=35% Similarity=0.703 Sum_probs=73.6
Q ss_pred cchHHHHHHHhcCCCC-CCCcccccC-CCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHhhhhhccCCCCCc
Q psy15186 65 QIQLWQFLLELLSDST-NANCITWEG-TNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGLGNI 142 (151)
Q Consensus 65 ~~~Lw~FLl~LL~d~~-~~~~I~W~~-~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k~~~~~~p~~~~i 142 (151)
.++|||||++||.|++ +.+||+|+| ..|||+|+||++||+|||.+||+|+||||||||||||||++++.-.|+|
T Consensus 4 ~~~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G---- 79 (103)
T 3jtg_A 4 GTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDG---- 79 (103)
T ss_dssp CCSHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTT----
T ss_pred cccHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCC----
Confidence 3589999999999987 789999999 5799999999999999999999999999999999999999975433333
Q ss_pred ccceeeecC
Q psy15186 143 DKEIVYFFR 151 (151)
Q Consensus 143 ~~~l~y~f~ 151 (151)
+|+||+|-
T Consensus 80 -~r~vY~F~ 87 (103)
T 3jtg_A 80 -RRLVYKFG 87 (103)
T ss_dssp -CTTEEEBC
T ss_pred -ceEEEEeC
Confidence 89999993
No 15
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.31 E-value=0.0025 Score=46.80 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHH-HhhcccCCCCCcHHHHHHHHHHHHHh
Q psy15186 68 LWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVAR-RWGERKSKPNMNYDKLSRALRTHSRR 130 (151)
Q Consensus 68 Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vAr-lWG~~k~~~~m~YdklsRaLR~yy~k 130 (151)
.-.=|.++|+|++..++|+|...+..|.|.|++++++ +--.. -..-||.++-|-|-.|.=+
T Consensus 20 F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~y--Fkh~nfsSFvRQLN~YGF~ 81 (125)
T 2ldu_A 20 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKY--FKHNNMASFVRQLNMYGFR 81 (125)
T ss_dssp HHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHH--SSCCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHh--cCCCcHHHHHHHhcccCce
Confidence 3344456788999999999999999999999998875 22211 2345799999999888655
No 16
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=96.09 E-value=0.0055 Score=43.53 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=44.7
Q ss_pred HHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHh
Q psy15186 71 FLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRR 130 (151)
Q Consensus 71 FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k 130 (151)
=|.++|+|++..++|+|...+..|.|.|++++++-==. +--..-+|.++-|-|-.|.=+
T Consensus 10 KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~yFkh~n~~SFvRQLN~YGF~ 68 (106)
T 1hks_A 10 KLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLP-LNYKHNNMASFIRQLNMYGFH 68 (106)
T ss_dssp HHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTST-TTTSCCCHHHHHHHHHHHCCC
T ss_pred HHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhH-HhcCCCcHHHHHHhhhcCCCe
Confidence 34577899999999999998889999999877642111 112345899999999888655
No 17
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=95.58 E-value=0.014 Score=41.54 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=47.1
Q ss_pred chHHHHHHHhcCCCCCCCcccccCCCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHh
Q psy15186 66 IQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRR 130 (151)
Q Consensus 66 ~~Lw~FLl~LL~d~~~~~~I~W~~~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k 130 (151)
...-.=|.++|+|++..++|+|...+..|.|.|++++++.==. +--..-+|.++-|-|-.|.=+
T Consensus 13 p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp-~yFkh~nfsSFvRQLN~YGF~ 76 (102)
T 3hts_B 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLP-KYFKHSNFASFVRQLNMYGWH 76 (102)
T ss_dssp CHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHH-HHCSSCCHHHHHHHHHHTTEE
T ss_pred CcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHH-HhcCCCcHHHHHHHhhcCCce
Confidence 3444555677899999999999998899999999888752111 112346799999999888544
No 18
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=92.36 E-value=0.027 Score=40.77 Aligned_cols=15 Identities=53% Similarity=0.972 Sum_probs=13.4
Q ss_pred CcccCCeeeeeeecc
Q psy15186 1 MTKVHGKRYAYKFDF 15 (151)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (151)
|.||||+||.|+|..
T Consensus 68 i~Kv~GkrlvY~F~~ 82 (110)
T 1awc_A 68 ICKVQGKRFVYKFVC 82 (110)
T ss_dssp EEECTTSTTEEEECS
T ss_pred EeeccCCeeEEecCC
Confidence 689999999999973
No 19
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.90 E-value=0.053 Score=39.64 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=12.9
Q ss_pred CcccCCeeeeeeec
Q psy15186 1 MTKVHGKRYAYKFD 14 (151)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (151)
|.||||+||.|+|-
T Consensus 77 i~Kv~G~r~vY~F~ 90 (118)
T 2dao_A 77 IRKEPGQRLLFRFM 90 (118)
T ss_dssp EECCSSSSSEEEEC
T ss_pred EEeccCCeEEEEec
Confidence 68999999999995
No 20
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=89.93 E-value=0.05 Score=40.32 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=12.8
Q ss_pred CcccCCeeeeeeec
Q psy15186 1 MTKVHGKRYAYKFD 14 (151)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (151)
|.||||+||.|+|-
T Consensus 73 i~Kv~GqrlvY~F~ 86 (128)
T 2lf8_A 73 IRKEPGQRLLFRFM 86 (128)
Confidence 78999999999993
No 21
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=88.02 E-value=0.11 Score=39.63 Aligned_cols=14 Identities=43% Similarity=0.987 Sum_probs=12.8
Q ss_pred CcccCCeeeeeeec
Q psy15186 1 MTKVHGKRYAYKFD 14 (151)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (151)
|.||||+||.|+|.
T Consensus 73 i~KV~GqrlvYkF~ 86 (157)
T 1hbx_G 73 IKKVNGQKFVYKFV 86 (157)
T ss_dssp EEECSSCTTEEEES
T ss_pred EEecCCCeEEEeeC
Confidence 67999999999994
No 22
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN induction, IRF family, gene regulation/DNA complex; HET: DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A 1irg_A 1if1_A*
Probab=80.00 E-value=4.9 Score=28.74 Aligned_cols=66 Identities=14% Similarity=0.320 Sum_probs=51.9
Q ss_pred CcchHHHHHHHhcCCCCCCCcccccC-CCceEEec-----------C-hHHHHHHhhcccCC-----CCCcHHHHHHHHH
Q psy15186 64 GQIQLWQFLLELLSDSTNANCITWEG-TNGEFKLT-----------D-PDEVARRWGERKSK-----PNMNYDKLSRALR 125 (151)
Q Consensus 64 G~~~Lw~FLl~LL~d~~~~~~I~W~~-~~~~Fk~~-----------d-~~~vArlWG~~k~~-----~~m~YdklsRaLR 125 (151)
++.+|-.+|++-++...+.+ +.|+| +...|+|= + -..+=+.|..++|+ ..-+.-+-.+.||
T Consensus 4 ~r~rlrpWL~~qi~sg~ypG-L~W~d~~kt~FrIPWkHa~r~~~~~e~D~~IFkaWA~~~Gk~~~g~d~~dp~~WK~nfR 82 (113)
T 2irf_G 4 ERMRMRPWLEEQINSNTIPG-LKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGIDKPDPKTWKANFR 82 (113)
T ss_dssp -CCCHHHHHHHHHHTTCSTT-CEEEETTTTEEEEECCCTTSTTCCHHHHSHHHHHHHHHTTSCCTTTSCCCHHHHHHHHH
T ss_pred cccchHHHHHHHhccCCCCC-ceEEcCCCCEEEEeeeeCCcCCccccchhHHHHHHHHHhCCCCCCCCCCChhHHHHHHH
Confidence 45678899999999999986 69998 67999982 1 23677899999886 3357888888888
Q ss_pred HHHHh
Q psy15186 126 THSRR 130 (151)
Q Consensus 126 ~yy~k 130 (151)
.--.+
T Consensus 83 cALn~ 87 (113)
T 2irf_G 83 CAMNS 87 (113)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88777
No 23
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=74.60 E-value=5.3 Score=28.82 Aligned_cols=65 Identities=15% Similarity=0.365 Sum_probs=50.2
Q ss_pred cchHHHHHHHhcCCCCCCCcccccC-CCceEEec-------C----hHHHHHHhhcccCC-----CCCcHHHHHHHHHHH
Q psy15186 65 QIQLWQFLLELLSDSTNANCITWEG-TNGEFKLT-------D----PDEVARRWGERKSK-----PNMNYDKLSRALRTH 127 (151)
Q Consensus 65 ~~~Lw~FLl~LL~d~~~~~~I~W~~-~~~~Fk~~-------d----~~~vArlWG~~k~~-----~~m~YdklsRaLR~y 127 (151)
+.+|-.+|++.++...+.+ +.|+| +...|+|- | ...|=+.|..++|+ ..-+..+-.+.||.-
T Consensus 8 k~rlr~WL~~qidsg~ypG-l~W~d~~kt~FrIPWkH~~r~~~~~~D~~IFkaWA~~~Gk~~~g~d~~dp~~WKtnfRcA 86 (116)
T 3qu6_A 8 KPRILPWLVSQLDLGQLEG-VAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSA 86 (116)
T ss_dssp -CCHHHHHHHHHHHTCSTT-CEECSTTSCEEEEECCC--------CCCSHHHHHHHHTTSCCBTTBCCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHhccCCcCC-cEEEcCCCCEEEecCcCCCcCCcchhHHHHHHHHHHhcCcccCCCCCCCHHHHHHHHHHH
Confidence 5789999999999999976 69998 67999982 1 23577899999886 244677888888887
Q ss_pred HHh
Q psy15186 128 SRR 130 (151)
Q Consensus 128 y~k 130 (151)
-.+
T Consensus 87 Ln~ 89 (116)
T 3qu6_A 87 MNR 89 (116)
T ss_dssp HHT
T ss_pred Hhc
Confidence 766
No 24
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=67.16 E-value=7.2 Score=34.92 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=49.5
Q ss_pred CCCCCcchHHHHHHHhcCCCCCCCcccccC-CCceEEec-------C----hHHHHHHhhcccCC-----CCCcHHHHHH
Q psy15186 60 STGSGQIQLWQFLLELLSDSTNANCITWEG-TNGEFKLT-------D----PDEVARRWGERKSK-----PNMNYDKLSR 122 (151)
Q Consensus 60 ~~g~G~~~Lw~FLl~LL~d~~~~~~I~W~~-~~~~Fk~~-------d----~~~vArlWG~~k~~-----~~m~YdklsR 122 (151)
..+.++.+|-.+|++-|+...+.+ +.|+| +++.|+|= | ..++=+.|..++|+ ..-++-+..+
T Consensus 420 ~~~~~k~rlrpWL~~qi~sg~ypG-l~W~d~~kt~FrIPWkH~~r~~~~~~d~~IFkaWA~~tGk~~~g~d~~dp~~WKt 498 (540)
T 2o61_A 420 SALSPKPRILPWLVSQLDLGQLEG-VAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKR 498 (540)
T ss_dssp ---------CHHHHHHHHHCCSTT-CEESCTTSSCEEEECCCTTCTTCCTGGGHHHHHHHHTTTSCCSSSSCCCHHHHHH
T ss_pred ccCCCccchHHHHHHHhccCCcCc-ceEECCCCCEEEecCccCCcCCcchhhhHHHHHHHHHhCCCcCCCCCCCHHHHHH
Confidence 344557889999999999999976 79998 67999982 1 34688999999986 2467888888
Q ss_pred HHHHHHHh
Q psy15186 123 ALRTHSRR 130 (151)
Q Consensus 123 aLR~yy~k 130 (151)
.||.--.+
T Consensus 499 nfRcALn~ 506 (540)
T 2o61_A 499 NFRSALNR 506 (540)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhcc
Confidence 88887766
No 25
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.76 E-value=5 Score=28.98 Aligned_cols=65 Identities=18% Similarity=0.365 Sum_probs=50.7
Q ss_pred cchHHHHHHHhcCCCCCCCcccccC-CCceEEec-------Ch-----HHHHHHhhcccCC-----CCCcHHHHHHHHHH
Q psy15186 65 QIQLWQFLLELLSDSTNANCITWEG-TNGEFKLT-------DP-----DEVARRWGERKSK-----PNMNYDKLSRALRT 126 (151)
Q Consensus 65 ~~~Lw~FLl~LL~d~~~~~~I~W~~-~~~~Fk~~-------d~-----~~vArlWG~~k~~-----~~m~YdklsRaLR~ 126 (151)
..+|-.+|++-|+...+++ +.|.| ++..|+|- |. ..+=+.|..++|+ ..-+.-+-.+.||.
T Consensus 6 ~~~lr~WL~~qidsg~ypG-L~W~d~ekt~FrIPWkH~~r~~~~~~~D~~iFkaWA~~~Gk~~~g~d~~d~~~wK~nfRc 84 (121)
T 2dll_A 6 SGKLRQWLIDQIDSGKYPG-LVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRC 84 (121)
T ss_dssp SCCHHHHHHHHHHHTCSSS-CEESSSSSCEEEEECCCCCCSSSCHHHHTHHHHHHHHHHSCCCBTTBCCCHHHHHHHHHH
T ss_pred ccchHHHHHHHhccCCCCC-ceEecCCCCEEEeeCccCCcCCCCcchhhHHHHHHHHHcCCCcCCCCCCCHHHHHHHHHH
Confidence 4678899999999999987 89999 67999982 11 3677899999885 34567777777777
Q ss_pred HHHh
Q psy15186 127 HSRR 130 (151)
Q Consensus 127 yy~k 130 (151)
--.+
T Consensus 85 ALn~ 88 (121)
T 2dll_A 85 ALNK 88 (121)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7766
No 26
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=52.12 E-value=6.9 Score=29.00 Aligned_cols=66 Identities=14% Similarity=0.353 Sum_probs=50.5
Q ss_pred CcchHHHHHHHhcCCCCCCCcccccC-CCceEEec-------C----hHHHHHHhhcccCC--CC-----C---------
Q psy15186 64 GQIQLWQFLLELLSDSTNANCITWEG-TNGEFKLT-------D----PDEVARRWGERKSK--PN-----M--------- 115 (151)
Q Consensus 64 G~~~Lw~FLl~LL~d~~~~~~I~W~~-~~~~Fk~~-------d----~~~vArlWG~~k~~--~~-----m--------- 115 (151)
.+.+|-.+|++.++...+.+ +.|+| ....|+|- | -..|=+.|..++|+ +. -
T Consensus 11 ~r~rlrpWL~~qidSg~ypG-L~W~d~~kt~FrIPWkHa~r~d~~~~D~~IFkaWA~~tGk~~~g~~~~~~~~~~~~~~~ 89 (137)
T 3qu3_A 11 QRVLFGDWLLGEVSSGQYEG-LQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVARGRWPPSGVNLPPPEAEAAERR 89 (137)
T ss_dssp -CCCHHHHHHHHHHHTCSTT-CEESSTTCCEEEEECCCCTTSCCCGGGGHHHHHHHHHTTSSCTTCCCSCHHHHHHHHHT
T ss_pred CcccHHHHHHHHhccCCcCC-ceEecCCCCEEEeeCccCCcCCCchHHHHHHHHHHHHhCCcCCCcccCCCccccccccC
Confidence 36889999999999999986 69998 67999983 1 34777999999996 32 1
Q ss_pred cHHHHHHHHHHHHHh
Q psy15186 116 NYDKLSRALRTHSRR 130 (151)
Q Consensus 116 ~YdklsRaLR~yy~k 130 (151)
+..+..+.||---.+
T Consensus 90 dp~~WKtnfRcALnk 104 (137)
T 3qu3_A 90 ERRGWKTNFRCALHS 104 (137)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 455777777776666
No 27
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=48.18 E-value=36 Score=30.39 Aligned_cols=69 Identities=12% Similarity=0.274 Sum_probs=51.8
Q ss_pred CCCCcchHHHHHHHhcCCCCCCCcccccC-CCceEEec-----------ChHHHHHHhhcccCCC--C------------
Q psy15186 61 TGSGQIQLWQFLLELLSDSTNANCITWEG-TNGEFKLT-----------DPDEVARRWGERKSKP--N------------ 114 (151)
Q Consensus 61 ~g~G~~~Lw~FLl~LL~d~~~~~~I~W~~-~~~~Fk~~-----------d~~~vArlWG~~k~~~--~------------ 114 (151)
.+..+..|-.+|++.|+...+.+ +.|+| ++..|+|= +...+=+.|..++|+- .
T Consensus 289 ~~~~r~~lrpWL~~qi~sg~ypG-l~W~d~~k~~FrIPWkH~~r~~~~e~d~~iFk~WA~~~Gk~~~g~~~~~~~p~~~~ 367 (540)
T 2o61_A 289 GAAPRVLFGEWLLGEISSGCYEG-LQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAET 367 (540)
T ss_dssp -CCCCCCHHHHHHHHHHHTCSTT-CEESSSSCCEEEEECCCTTCTTCCTGGGHHHHHHHHHTTSSCCCCC---CCCSTHH
T ss_pred cCCCcccHHHHHHHHHhcCCcCC-ceEECCCCCEEEecceeCCcCCcccchhHHHHHHHHHhCCCCCCccccCCCccccc
Confidence 33447889999999999999975 79998 67999982 1347779999998862 1
Q ss_pred CcHHHHHHHHHHHHHh
Q psy15186 115 MNYDKLSRALRTHSRR 130 (151)
Q Consensus 115 m~YdklsRaLR~yy~k 130 (151)
.+.-+..+.+|.--.+
T Consensus 368 ~d~~~WK~nfRcALn~ 383 (540)
T 2o61_A 368 AERAGWKTNFRCALRS 383 (540)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcc
Confidence 1456777778877776
No 28
>1knv_A BSE634I restriction endonuclease; APO-enzyme, hydrolase; 2.17A {Geobacillus stearothermophilus} SCOP: c.52.1.7 PDB: 3v1z_A* 3v20_A* 3v21_A*
Probab=32.66 E-value=46 Score=27.48 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=40.2
Q ss_pred CCCCcccccC--CCceEEecChHHHHHHhhcccCCCCCcHHHHHHHHHHHHHh
Q psy15186 80 TNANCITWEG--TNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRR 130 (151)
Q Consensus 80 ~~~~~I~W~~--~~~~Fk~~d~~~vArlWG~~k~~~~m~YdklsRaLR~yy~k 130 (151)
.+++||.|-. ....|+|..-+.++.+.|..- |.+++...--.+|.|-.+
T Consensus 6 ~~~~c~~~~~~n~~tk~ri~~~n~~~~~~~~~i--P~~~isd~l~~~~n~~~~ 56 (293)
T 1knv_A 6 TNSNCVEEYKENGKTKIRIKPFNALIELYHHQT--PTGSIKENLDKLENYVKD 56 (293)
T ss_dssp GGCSSEEEECCSSSCEEEECHHHHHHHHCSSSC--CCSBHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHhcCCCcEEEchHHHHHHHHhccC--CCccHHHHHHHHHHHHHH
Confidence 5789999964 568999988899999999887 556888888888888554
No 29
>3imo_A Integron cassette protein; novel, integron protein, argentinean O139 strain, unknown function; 1.80A {Vibrio cholerae O139}
Probab=22.95 E-value=31 Score=25.32 Aligned_cols=13 Identities=31% Similarity=1.012 Sum_probs=10.3
Q ss_pred ccCCeeeeeeecc
Q psy15186 3 KVHGKRYAYKFDF 15 (151)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (151)
+..||||||.|.-
T Consensus 85 ti~gkRyaFsYNh 97 (133)
T 3imo_A 85 TINGERYAFSYNH 97 (133)
T ss_dssp EETTEEEEEEEET
T ss_pred EEcCEEEEEEecc
Confidence 4689999998753
Done!