RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15186
(151 letters)
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Length = 98
Score = 103 bits (259), Expect = 4e-30
Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 2/75 (2%)
Query: 62 GSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLS 121
GSGQIQLWQFLLELLSDS NA+CITWEGTNGEFK+TDPDEVARRWGERKSKPNMNYDKLS
Sbjct: 2 GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 122 RALRTHSRR--LRKI 134
RALR + + + K+
Sbjct: 62 RALRYYYDKNIMTKV 76
Score = 36.9 bits (85), Expect = 3e-04
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 1 MTKVHGKRYAYKFDFQGLAAATQPA 25
MTKVHGKRYAYKFDF G+A A QP
Sbjct: 73 MTKVHGKRYAYKFDFHGIAQALQPH 97
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA
complex, double helix, transcription/DNA complex; 2.00A
{Homo sapiens} SCOP: a.4.5.21
Length = 97
Score = 99.7 bits (248), Expect = 2e-28
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 56 GIQSSTGSGQIQLWQFLLELLSDS-TNANCITWE-GTNGEFKLTDPDEVARRWGERKSKP 113
G + GS I LWQFL ELL + I W G FK+ D +VAR WG RK++P
Sbjct: 1 GSLDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRP 60
Query: 114 NMNYDKLSRALRTHSRR 130
MNYDKLSR++R + ++
Sbjct: 61 AMNYDKLSRSIRQYYKK 77
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation
and repression, structural genomics; NMR {Homo sapiens}
SCOP: a.4.5.21
Length = 107
Score = 97.0 bits (241), Expect = 3e-27
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 59 SSTGSGQIQLWQFLLELLSD-STNANCITWEG-TNGEFKLTDPDEVARRWGERKSKPNMN 116
SS SG LW+F+ +LL N + WE G F++ + +A+ WG+RK M
Sbjct: 2 SSGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMT 61
Query: 117 YDKLSRALRTHSRR--LRKI 134
Y+KLSRALR + + L ++
Sbjct: 62 YEKLSRALRYYYKTGILERV 81
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Length = 128
Score = 97.6 bits (242), Expect = 4e-27
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 62 GSGQIQLWQFLLELLSDSTNANCITWEGTNG-EFKLTDPDEVARRWGERKSKPNMNYDKL 120
GS LW ++ +LLSDS N I WE F++ DP+ +AR WG K++ NM Y+K+
Sbjct: 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 121 SRALRTHSRR 130
SRALR + +
Sbjct: 61 SRALRHYYKL 70
Score = 25.5 bits (55), Expect = 5.4
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 1 MTKVHGKRYAYKF 13
+ K G+R ++F
Sbjct: 73 IRKEPGQRLLFRF 85
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged
helix-turn-helix, DNA-binding specificity,
transcription/DNA complex; HET: DNA; 1.93A {Homo
sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Length = 93
Score = 95.1 bits (236), Expect = 1e-26
Identities = 39/73 (53%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 64 GQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRA 123
I LWQFLL+LL N + I W +G+FKL +EVAR WG RK+KPNMNYDKLSRA
Sbjct: 3 SAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRA 62
Query: 124 LRTHSRR--LRKI 134
LR + + ++K+
Sbjct: 63 LRYYYVKNIIKKV 75
Score = 25.8 bits (56), Expect = 3.0
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 1 MTKVHGKRYAYKF 13
+ KV+G+++ YKF
Sbjct: 72 IKKVNGQKFVYKF 84
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: a.4.5.21
Length = 157
Score = 96.8 bits (240), Expect = 2e-26
Identities = 38/69 (55%), Positives = 46/69 (66%)
Query: 62 GSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLS 121
I LWQFLL+LL N + I W +G+FKL +EVAR WG RK+KPNMNYDKLS
Sbjct: 2 SDSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLS 61
Query: 122 RALRTHSRR 130
RALR + +
Sbjct: 62 RALRYYYVK 70
Score = 35.5 bits (81), Expect = 0.002
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 1 MTKVHGKRYAYKFDFQGLAAATQPAAADPAYKYQSDLFMSSYHHSTKLNFMSSAAGIQSS 60
+ KV+G+++ YKF P L S S+K + +
Sbjct: 73 IKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSK-DVENGGKDKPPQ 131
Query: 61 TGSGQ 65
G+
Sbjct: 132 PGAKT 136
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA
complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 96.9 bits (240), Expect = 2e-26
Identities = 53/99 (53%), Positives = 65/99 (65%), Gaps = 5/99 (5%)
Query: 52 SSAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKS 111
AA + TGSG IQLWQFLLELL+D ++ + I+W G EFKL+DPDEVARRWG+RK+
Sbjct: 51 IPAAALAGYTGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKN 110
Query: 112 KPNMNYDKLSRALRTHSRRLRKIFIPGLGNIDKEIVYFF 150
KP MNY+KLSR LR + + G K VY F
Sbjct: 111 KPKMNYEKLSRGLRYYYDKNIIHKTAG-----KRYVYRF 144
Score = 26.8 bits (58), Expect = 2.9
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1 MTKVHGKRYAYKF 13
+ K GKRY Y+F
Sbjct: 132 IHKTAGKRYVYRF 144
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain;
1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A
1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Length = 146
Score = 96.0 bits (238), Expect = 2e-26
Identities = 54/99 (54%), Positives = 65/99 (65%), Gaps = 5/99 (5%)
Query: 52 SSAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKS 111
AA + TGSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+
Sbjct: 26 IPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKN 85
Query: 112 KPNMNYDKLSRALRTHSRRLRKIFIPGLGNIDKEIVYFF 150
KP MNY+KLSR LR + + I G K VY F
Sbjct: 86 KPKMNYEKLSRGLRYYYD--KNIIHKTAG---KRYVYRF 119
Score = 26.7 bits (58), Expect = 2.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 1 MTKVHGKRYAYKF--DFQGLAAATQP 24
+ K GKRY Y+F D Q L T
Sbjct: 107 IHKTAGKRYVYRFVCDLQSLLGYTPE 132
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 94.5 bits (234), Expect = 4e-26
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 59 SSTGSGQIQLWQFLLELLSDSTNANCITWEGTNG-EFKLTDPDEVARRWGERKSKPNMNY 117
SS SG LW ++ +LLSDS N I WE F++ DP+ +AR WG K++ NM Y
Sbjct: 2 SSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTY 61
Query: 118 DKLSRALRTHSRR 130
+K+SRALR + +
Sbjct: 62 EKMSRALRHYYKL 74
Score = 25.1 bits (54), Expect = 6.3
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 1 MTKVHGKRYAYKF 13
+ K G+R ++F
Sbjct: 77 IRKEPGQRLLFRF 89
>1awc_A Protein (GA binding protein alpha); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: a.4.5.21
Length = 110
Score = 92.5 bits (229), Expect = 2e-25
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
Query: 66 IQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALR 125
IQLWQFLLELL+D +CI+W G GEFKL P+ VA++WG+RK+KP MNY+KLSRALR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 126 THSRRLRKIFIPGLGNIDKEIVYFF 150
+ + G K VY F
Sbjct: 61 YYYDGDMICKVQG-----KRFVYKF 80
>4avp_A ETS translocation variant 1; transcription, transcriptional
activation and repression, DN binding protein, E
twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens}
Length = 106
Score = 91.8 bits (227), Expect = 3e-25
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Query: 59 SSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYD 118
+S G +QLWQFL+ LL D +N++ I W G EFKL +P+EVARRWG +K++P MNYD
Sbjct: 5 TSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYD 64
Query: 119 KLSRALRTHSRRLRKIFIPGLGNIDKEIVYFF 150
KLSR+LR + + I G + VY F
Sbjct: 65 KLSRSLRYYYE--KGIMQKVAG---ERYVYKF 91
Score = 25.5 bits (55), Expect = 4.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 1 MTKVHGKRYAYKF 13
M KV G+RY YKF
Sbjct: 79 MQKVAGERYVYKF 91
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex,
type II TGF-beta receptor, activa alternative splicing,
cytoplasm; HET: DNA; 2.20A {Mus musculus}
Length = 103
Score = 88.6 bits (219), Expect = 5e-24
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 65 QIQLWQFLLELLSDS-TNANCITWEGTN-GEFKLTDPDEVARRWGERKSKPNMNYDKLSR 122
LW+F+ ++L N + WE + G FK + VA+ WG++K NM Y+KLSR
Sbjct: 4 GTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSR 63
Query: 123 ALRTHSRR 130
A+R + +R
Sbjct: 64 AMRYYYKR 71
Score = 28.1 bits (62), Expect = 0.65
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 1 MTKVHGKRYAYKFDFQGLAAATQPAAAD 28
+ +V G+R YKF +
Sbjct: 74 LERVDGRRLVYKFGKNSSGWKEEEVGES 101
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex
(transcription regulating/DNA), oncogene, transforming
protein, DNA- binding, activator; HET: DNA; 2.10A {Mus
musculus} SCOP: a.4.5.21
Length = 89
Score = 85.5 bits (211), Expect = 6e-23
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 65 QIQLWQFLLELLSDSTNANCITWEGTN---GEFKLTDPDEVARRWGERKS-KPNMNYDKL 120
+I+L+QFLL+LL + I W + +F + +A RWG +K + M Y+K+
Sbjct: 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 121 SRALRTHSRR 130
+RALR + +
Sbjct: 61 ARALRNYGKT 70
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein
structure INI NEW YORK SGX research center for
structural genomics, nysgx; 2.20A {Azorhizobium
caulinodans}
Length = 377
Score = 27.6 bits (62), Expect = 1.6
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 17 GLAAATQPAAADPAYKYQSDLFMSSYHHS 45
LAA TQ AA P + +M + +
Sbjct: 307 ALAAGTQLIAATPGISLGCEFYMPHHVLT 335
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.0
Identities = 30/168 (17%), Positives = 46/168 (27%), Gaps = 55/168 (32%)
Query: 3 KVHGKRYAYKFDF--------QGLAAATQPAAADPAYKYQSDLFMSSYHHSTKLNFMSSA 54
K+ G + QGL A A D + F S + + F
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-----ESFFVSVRKAITVLFFI-- 306
Query: 55 AGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEG----------------------TNG 92
G++ L +L DS N EG TN
Sbjct: 307 -GVRCYEAYPNTSLPP---SILEDSLENN----EGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 93 EFKLTDPDEVARRWGERKSKPNMNYDKLS---RALRTHSRRLRKIFIP 137
E++ G + N+ +S ++L + LRK P
Sbjct: 359 HLPAGKQVEISLVNGAK----NLV---VSGPPQSLYGLNLTLRKAKAP 399
Score = 26.2 bits (57), Expect = 6.4
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 49 NFMSSAAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLT 97
N+ + I + G+++ + E+ ST+ T+ G T
Sbjct: 1687 NYSAM---IFETIVDGKLKTEKIFKEINEHSTS---YTFRSEKGLLSAT 1729
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
9450D, isomerase, PSI-2, protein structure initiative;
2.20A {Corynebacterium glutamicum}
Length = 383
Score = 27.2 bits (61), Expect = 2.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 17 GLAAATQPAAADPAYKYQSDLFMSSYHH 44
G AA+ Q AA+ A Y ++LF
Sbjct: 310 GTAASLQFAASTKAISYGTELFGPQLLK 337
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding, isomeras structural genomics, PSI-2; HET: MUC;
1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A*
1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Length = 382
Score = 26.8 bits (60), Expect = 3.4
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 17 GLAAATQPAAADPAYKYQSDLFMSSYH 43
G A+ + ++LF
Sbjct: 310 GTLASAHAFLTLNKLSWDTELFGPLLL 336
>2ldu_A Heat shock factor protein 1; structural genomics, northeast
structural genomics consortiu DNA-binding, PSI-biology,
protein structure initiative; NMR {Homo sapiens}
Length = 125
Score = 25.5 bits (56), Expect = 4.7
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 72 LLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHS-RR 130
L L+SD I W + F + D + A+ + K N N R L + R+
Sbjct: 24 LWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHN-NMASFVRQLNMYGFRK 82
Query: 131 LRKIFIPGLGNIDKEIVYF 149
+ I GL +++ F
Sbjct: 83 VVHIEQGGLVKPERDDTEF 101
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase;
HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A*
2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 26.1 bits (58), Expect = 5.6
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 6/67 (8%)
Query: 46 TKLNFMSSAAGIQSSTGSGQIQ---LWQFLLELLSDSTNANCITWEGTNGEFK---LTDP 99
T ++ + I L Q +LE S E + T
Sbjct: 9 TTVSASPDGTLNLPAAAPLSIASGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTAL 68
Query: 100 DEVARRW 106
D R W
Sbjct: 69 DGAMRDW 75
>2kk4_A Uncharacterized protein AF_2094; protein of unknown function,
structural genomics, PSI-2, protein structure
initiative; NMR {Archaeoglobus fulgidus}
Length = 95
Score = 25.1 bits (54), Expect = 5.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 92 GEFKLTDPDEVARRWGERKSKP 113
GEF + E+ R+W E KSKP
Sbjct: 56 GEFDEEEARELGRKWLEEKSKP 77
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural
genomics, mandelate racemase/muconatelactonizing
hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism}
PDB: 2pce_A
Length = 386
Score = 26.1 bits (58), Expect = 5.9
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 17 GLAAATQPAAADPAYKYQSDLFMSSYH 43
AA A + P + + L +
Sbjct: 308 SFAAILHLAQSTPRHLLRCALDTRAMT 334
>1knv_A BSE634I restriction endonuclease; APO-enzyme, hydrolase; 2.17A
{Geobacillus stearothermophilus} SCOP: c.52.1.7 PDB:
3v1z_A* 3v20_A* 3v21_A*
Length = 293
Score = 26.1 bits (56), Expect = 6.0
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 75 LLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRR 130
+ ++ TN+NC+ NG+ K+ A P + + L + +
Sbjct: 1 MTTNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKD 56
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics,
protein structure initiative; 1.60A {Thermobifida fusca}
PDB: 2qvh_A*
Length = 327
Score = 25.8 bits (57), Expect = 6.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Query: 17 GLAAATQPAAADPAYKYQSDLFMSSYHH 44
GLAA AAA P Y L H
Sbjct: 235 GLAAGVALAAALPELPYACGLATLRLLH 262
>3eo5_A Resuscitation-promoting factor RPFB; cell adhesion, crystal; 1.83A
{Mycobacterium tuberculosis} PDB: 1xsf_A
Length = 171
Score = 25.4 bits (55), Expect = 6.4
Identities = 12/87 (13%), Positives = 19/87 (21%), Gaps = 11/87 (12%)
Query: 18 LAAATQPAAADPAYKYQSDLFMSSYHHSTKLNFMSSAAGIQSSTGSGQIQLWQFLLELLS 77
+ A + + + + +TG+G QF
Sbjct: 67 VTPAHEAVVRVGTKPGTEVPPVIDGSIWDAIAGCEAGGNWAINTGNGYYGGVQFDQG--- 123
Query: 78 DSTNANCITWEGTNGEFKLTDPDEVAR 104
TWE G D R
Sbjct: 124 --------TWEANGGLRYAPRADLATR 142
>3hts_B Heat shock transcription factor; transcription regulation,
DNA-binding protein, complex (WING helix_TURN_
helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22
PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A
1fbq_A
Length = 102
Score = 24.7 bits (54), Expect = 7.8
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 72 LLELLSDSTNANCITWEGTNGEFKLTDPDEVAR 104
L +++D +N I W + + + + +
Sbjct: 19 LWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQ 51
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural
genomics, PSI, protein structu initiative, nysgrc; 2.30A
{Roseovarius nubinhibens} PDB: 3fvd_B
Length = 378
Score = 25.3 bits (56), Expect = 8.4
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 17 GLAAATQPAAADPAYKYQSDLFMSSYH 43
AA AA+ P + ++
Sbjct: 302 ADTAALHLAASTPEANRLASWLGHAHL 328
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target
9375A, divergent enolase, lyase, PSI-2; 1.60A
{Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A
3es7_A 3fyy_A 3hpf_A*
Length = 391
Score = 25.3 bits (56), Expect = 9.3
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 17 GLAAATQPAAADPAYKYQSDLFMSSYHH 44
G AA + + SD +
Sbjct: 303 GTAAMAHLGCSLTNINHTSDPTGPELYV 330
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Length = 562
Score = 25.6 bits (57), Expect = 9.3
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 73 LELLSDSTNA 82
L L++D+TNA
Sbjct: 206 LLLIADATNA 215
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9440A, enolase superfamily,
PSI-2; 1.80A {Aspergillus oryzae RIB40}
Length = 371
Score = 25.3 bits (56), Expect = 9.9
Identities = 5/28 (17%), Positives = 6/28 (21%)
Query: 17 GLAAATQPAAADPAYKYQSDLFMSSYHH 44
AA A P + L
Sbjct: 304 AFAAIVHLAQTIPERSLRCILECRDMVT 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.400
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,367,128
Number of extensions: 126677
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 48
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)