RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15186
(151 letters)
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 119 bits (300), Expect = 1e-36
Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 2/75 (2%)
Query: 62 GSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLS 121
GSGQIQLWQFLLELLSDS NA+CITWEGTNGEFK+TDPDEVARRWGERKSKPNMNYDKLS
Sbjct: 2 GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 122 RALRTHSRR--LRKI 134
RALR + + + K+
Sbjct: 62 RALRYYYDKNIMTKV 76
Score = 36.7 bits (85), Expect = 1e-04
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 1 MTKVHGKRYAYKFDFQGLAAATQP 24
MTKVHGKRYAYKFDF G+A A QP
Sbjct: 73 MTKVHGKRYAYKFDFHGIAQALQP 96
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 117 bits (294), Expect = 4e-35
Identities = 54/97 (55%), Positives = 65/97 (67%), Gaps = 5/97 (5%)
Query: 54 AAGIQSSTGSGQIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKP 113
AA + TGSG IQLWQFLLELL+D + + I+W G EFKL+DPDEVARRWG+RK+KP
Sbjct: 28 AAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKP 87
Query: 114 NMNYDKLSRALRTHSRRLRKIFIPGLGNIDKEIVYFF 150
MNY+KLSR LR + + I G K VY F
Sbjct: 88 KMNYEKLSRGLRYYYD--KNIIHKTAG---KRYVYRF 119
Score = 27.1 bits (60), Expect = 0.58
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 1 MTKVHGKRYAYKF--DFQGLAAATQP 24
+ K GKRY Y+F D Q L T
Sbjct: 107 IHKTAGKRYVYRFVCDLQSLLGYTPE 132
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 110
Score = 107 bits (269), Expect = 8e-32
Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Query: 66 IQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALR 125
IQLWQFLLELL+D +CI+W G GEFKL P+ VA++WG+RK+KP MNY+KLSRALR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 126 THSRR--LRKI 134
+ + K+
Sbjct: 61 YYYDGDMICKV 71
Score = 26.3 bits (58), Expect = 0.94
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 1 MTKVHGKRYAYKF 13
+ KV GKR+ YKF
Sbjct: 68 ICKVQGKRFVYKF 80
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 104 bits (262), Expect = 5e-31
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 66 IQLWQFLLELLSDSTNANCITWEGT-NGEFKLTDPDEVARRWGERKSKPNMNYDKLSRAL 124
+ LWQFLL+LL + N + I+W GEFKL D +EVAR WG RK+K NMNYDKLSRAL
Sbjct: 1 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 60
Query: 125 RTHSRR--LRKI 134
R + + +RK+
Sbjct: 61 RYYYDKNIIRKV 72
Score = 24.7 bits (54), Expect = 2.1
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 1 MTKVHGKRYAYKF 13
+ KV G+++ YKF
Sbjct: 69 IRKVSGQKFVYKF 81
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 106 bits (265), Expect = 1e-30
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 65 QIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRAL 124
I LWQFLL+LL N + I W +G+FKL +EVAR WG RK+KPNMNYDKLSRAL
Sbjct: 3 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRAL 62
Query: 125 RTHSRR--LRKI 134
R + + ++K+
Sbjct: 63 RYYYVKNIIKKV 74
Score = 33.8 bits (77), Expect = 0.003
Identities = 11/63 (17%), Positives = 17/63 (26%)
Query: 1 MTKVHGKRYAYKFDFQGLAAATQPAAADPAYKYQSDLFMSSYHHSTKLNFMSSAAGIQSS 60
+ KV+G+++ YKF P L S S+K
Sbjct: 71 IKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQP 130
Query: 61 TGS 63
Sbjct: 131 GAK 133
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 100 bits (251), Expect = 2e-29
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 65 QIQLWQFLLELLSDSTNANCITWEGTNG---EFKLTDPDEVARRWGERK-SKPNMNYDKL 120
+I+L+QFLL+LL + I W + +F + +A RWG +K ++ M Y+K+
Sbjct: 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 121 SRALRTHSRR--LRKIFIPGLGNIDKEIVYFF 150
+RALR + + ++K + K++ Y F
Sbjct: 61 ARALRNYGKTGEVKK--------VKKKLTYQF 84
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 99.1 bits (247), Expect = 9e-29
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 66 IQLWQFLLELLSD-STNANCITWEG-TNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRA 123
I LWQFL ELL + I W G FK+ D +VAR WG RK++P MNYDKLSR+
Sbjct: 3 IHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRS 62
Query: 124 LRTHSRR--LRKI 134
+R + ++ +RK
Sbjct: 63 IRQYYKKGIIRKP 75
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 98.3 bits (245), Expect = 2e-28
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 67 QLWQFLLELLSD-STNANCITWEG-TNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRAL 124
LW+F+ +LL N + WE G F++ + +A+ WG+RK M Y+KLSRAL
Sbjct: 3 HLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRAL 62
Query: 125 RTHSRR--LRKIFIPGLGNIDKEIVYFF 150
R + + L + +D+ +VY F
Sbjct: 63 RYYYKTGILER--------VDRRLVYKF 82
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila
melanogaster [TaxId: 7227]}
Length = 106
Score = 32.2 bits (73), Expect = 0.008
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 72 LLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHSRRL 131
L L+ D+ I W F + + + A+ K + N R L +
Sbjct: 11 LWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYK-HNNMASFIRQLNMYGFHK 69
Query: 132 RKIFIPGLGNIDKEIVYFF 150
G D++ + F
Sbjct: 70 ITSIDNGGLRFDRDEIEFS 88
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast
(Kluyveromyces lactis) [TaxId: 28985]}
Length = 92
Score = 29.5 bits (66), Expect = 0.053
Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 72 LLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRTHS-RR 130
L +++D +N I W + + + + + + K + N+ R L + +
Sbjct: 9 LWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHS-NFASFVRQLNMYGWHK 67
Query: 131 LRKIFIPGLGNIDKEIVYFF 150
++ + + + + F
Sbjct: 68 VQDVKSGSMLSNNDSRWEFE 87
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 24.2 bits (52), Expect = 6.0
Identities = 10/83 (12%), Positives = 18/83 (21%), Gaps = 4/83 (4%)
Query: 65 QIQLWQFLLELLSDSTNANCITWEGTNGEFKLTDPDEVARRWGERKSKPNMN-YDKLSRA 123
+ + E L+ I + P E N Y
Sbjct: 34 AALVSRITAEELAKMPRLKFIQVVTAGLDH---LPWESIPPHVTVAGNAGSNGYGNERVW 90
Query: 124 LRTHSRRLRKIFIPGLGNIDKEI 146
+ +R + G + I
Sbjct: 91 RQMVMEAVRNLITYATGGRPRNI 113
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus
influenzae [TaxId: 727]}
Length = 293
Score = 24.2 bits (51), Expect = 8.1
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 72 LLELLSDSTNANCITWEGTNGEFKLTDPDE 101
++ D + + G+ GE + +E
Sbjct: 29 IIRHNIDKMKVDGLYVGGSTGENFMLSTEE 58
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 24.0 bits (50), Expect = 8.9
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 102 VARRWGERKSKPNMNYDKLSRALRTHSRRLRKIFIPGLGNIDKE 145
++ +G +N D+L R L H+ R L +
Sbjct: 6 ASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.400
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,282
Number of extensions: 23705
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 19
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)