BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15187
(298 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242025524|ref|XP_002433174.1| Negative elongation factor E, putative [Pediculus humanus corporis]
gi|212518715|gb|EEB20436.1| Negative elongation factor E, putative [Pediculus humanus corporis]
Length = 273
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/272 (46%), Positives = 169/272 (62%), Gaps = 42/272 (15%)
Query: 16 APRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLER 75
AP+PEPE+ + KRP E +DA+E A+KL+KSGAI + P+R EQ GFKRP GLER
Sbjct: 36 APKPEPEKQ--TILPKRPAEGRDAKERAKKLVKSGAIT-TSKTPRRPEQAGFKRPMGLER 92
Query: 76 KLTETDRSTVSAYQPFSAIQPEDSEPVDSKPK-------FLKVSKRETNDDRTPVDKKVY 128
KL+ +R TVS YQPFSA QPE++ +S+PK F+ RE ++
Sbjct: 93 KLSGVER-TVSGYQPFSATQPEEAPETESRPKVKNLYDSFVSARDRE---------ERGL 142
Query: 129 GESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDS 188
G+ + P+ KP+ GNTIFV G I+E+ LR+ F G I +VSME+EK RGFVT
Sbjct: 143 GDKQKEQGKPD-KPRQGNTIFVSGYKITEDLLRKTFQGMGNIVNVSMEIEKNRGFVT--- 198
Query: 189 PESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAA 248
FD +++++AI E++G+ V GV+LKVSLARRQ V INDA+
Sbjct: 199 ------------------FDKMDAAERAINEMDGSMVSGVQLKVSLARRQPVVEAINDAS 240
Query: 249 SSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
SS+TWS IA S KGNHKDKR ++Y++D+F
Sbjct: 241 SSSTWSTIAASHSQKGNHKDKRDVIVYEEDLF 272
>gi|91078286|ref|XP_971953.1| PREDICTED: similar to Negative elongation factor E CG5994-PA
[Tribolium castaneum]
gi|270003949|gb|EFA00397.1| hypothetical protein TcasGA2_TC003247 [Tribolium castaneum]
Length = 270
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 124/263 (47%), Positives = 167/263 (63%), Gaps = 34/263 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+PEPE+ T KRP EA+DAREVA+KL+KSGAI I + K+ EQ GFKRPRGLERK
Sbjct: 37 PKPEPEK---PITPKRPAEARDAREVAKKLIKSGAIPAISKQQKQPEQ-GFKRPRGLERK 92
Query: 77 LTETDRSTVSAYQPFSAIQPEDS--EPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLT 134
L +D+ VS YQPFSA+Q +D P + P+ + N D++ G +
Sbjct: 93 LI-SDK-IVSGYQPFSAVQMDDGPDNPENKPPRIKNLYDTFANAR----DREERGLTEKQ 146
Query: 135 RLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDK 194
R P+ KP+ GNTI+V G I+EEFL++HFS G I ++SME+EK RGFVT
Sbjct: 147 REKPD-KPRQGNTIYVSGYKITEEFLKKHFSTIGNIVNISMEIEKNRGFVT--------- 196
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWS 254
FD E++++AI E++G+ V G++LKV+LARRQ ++ PINDA+SS W+
Sbjct: 197 ------------FDKVEAAERAIAEMDGSMVSGIQLKVTLARRQPQIEPINDASSSAAWA 244
Query: 255 AIACHQSLKGNHKDKRHQVIYDD 277
+A S KGNH+DKR+ V YDD
Sbjct: 245 TLASSHSQKGNHRDKRNLVSYDD 267
>gi|24661022|ref|NP_648241.1| negative elongation factor E [Drosophila melanogaster]
gi|38372288|sp|P92204.1|NELFE_DROME RecName: Full=Negative elongation factor E
gi|1749772|emb|CAA71123.1| ANON-66Da protein [Drosophila melanogaster]
gi|1749776|emb|CAA71120.1| ANON-66Da protein [Drosophila melanogaster]
gi|7295068|gb|AAF50394.1| negative elongation factor E [Drosophila melanogaster]
gi|17945251|gb|AAL48683.1| RE14181p [Drosophila melanogaster]
gi|220947970|gb|ACL86528.1| Nelf-E-PA [synthetic construct]
gi|220957250|gb|ACL91168.1| Nelf-E-PA [synthetic construct]
Length = 280
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 168/271 (61%), Gaps = 35/271 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+PEPE +S TLKRP +A+DAREVARKL+KSGAI P ++ + +Q FKRP+G ER
Sbjct: 37 PKPEPE---SSLTLKRPTDARDAREVARKLIKSGAI-PAIQKQTKQDQTSFKRPKGQERA 92
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T +TV++YQPFS+ Q + SE + +P+ + + T DR +++
Sbjct: 93 KRSTSETTVASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDR---EERGMP 149
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
E + A EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK
Sbjct: 150 EKVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEK---------- 199
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ PINDA+S
Sbjct: 200 -----------SRGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASS 248
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
S WS+IA +S KG+HKD R V YD+D
Sbjct: 249 SAVWSSIAASKSQKGSHKDHREMVQYDEDFL 279
>gi|380018252|ref|XP_003693047.1| PREDICTED: negative elongation factor E-like [Apis florea]
Length = 275
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/276 (45%), Positives = 169/276 (61%), Gaps = 39/276 (14%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKR 69
+LQ KAP+ E ER T KRP EA+DAREVA+KL+KSG I + PKR EQ FKR
Sbjct: 33 ALQDLKAPKQETER--VPQTPKRPTEARDAREVAKKLIKSGVITA-PKTPKRPEQ-SFKR 88
Query: 70 PRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLK-----VSKRETNDDRTPVD 124
PRGL RKL T++ TVS+YQPFSA Q E+ EP +P+ VS ++T +DRT D
Sbjct: 89 PRGLVRKLNSTEK-TVSSYQPFSATQMEEEEPETVRPRVKDLYDSFVSAQDT-EDRTNRD 146
Query: 125 KKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFV 184
+ + + KP+ GNTIFV G ISE+FL++HF FG I ++SME EK RGFV
Sbjct: 147 VQSPSKQEM-------KPRAGNTIFVCGYKISEDFLKKHFQTFGNIINISMEAEKNRGFV 199
Query: 185 TFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPI 244
T FD E++++AI+E++G+ V ++LKVSLARRQ + +
Sbjct: 200 T---------------------FDKTEAAERAISEMDGSMVSSIQLKVSLARRQPIIESM 238
Query: 245 NDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
DA SS+ WS IA + S K HKD+R +Y++D+F
Sbjct: 239 TDATSSSMWSPIAANYSQKSAHKDRRDLKVYEEDLF 274
>gi|194865848|ref|XP_001971633.1| GG15071 [Drosophila erecta]
gi|190653416|gb|EDV50659.1| GG15071 [Drosophila erecta]
Length = 280
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 168/271 (61%), Gaps = 35/271 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+PEPE +S TLKRP +A+DAREVARKL+KSGAI P ++ + +Q FKRP+G ER
Sbjct: 37 PKPEPE---SSMTLKRPTDARDAREVARKLIKSGAI-PAIQKQTKQDQTSFKRPKGQERA 92
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T ++V++YQPFS+ Q + SE + +P+ + + T DR +++
Sbjct: 93 KRSTSETSVASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDR---EERGMP 149
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
E + A EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK
Sbjct: 150 EKVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEK---------- 199
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ PINDA+S
Sbjct: 200 -----------SRGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASS 248
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
S WS+IA +S KG+HKD R V YD+D
Sbjct: 249 SAVWSSIAASKSQKGSHKDHREMVQYDEDFL 279
>gi|328790245|ref|XP_394669.2| PREDICTED: negative elongation factor E [Apis mellifera]
Length = 275
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/276 (45%), Positives = 169/276 (61%), Gaps = 39/276 (14%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKR 69
+LQ KAP+ E ER T KRP EA+DAREVA+KL+KSG I + PKR EQ FKR
Sbjct: 33 ALQDLKAPKQETER--VPQTPKRPTEARDAREVAKKLIKSGVITA-PKTPKRPEQ-SFKR 88
Query: 70 PRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLK-----VSKRETNDDRTPVD 124
PRGL RKL T++ TVS+YQPFSA Q E+ EP +P+ VS ++T +DRT D
Sbjct: 89 PRGLVRKLNSTEK-TVSSYQPFSATQMEEEEPETVRPRVKDLYDSFVSAQDT-EDRTSRD 146
Query: 125 KKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFV 184
+ + + KP+ GNTIFV G ISE+FL++HF FG I ++SME EK RGFV
Sbjct: 147 IQSPSKQEI-------KPRAGNTIFVCGYKISEDFLKKHFQTFGNIINISMEAEKNRGFV 199
Query: 185 TFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPI 244
T FD E++++AI+E++G+ V ++LKVSLARRQ + +
Sbjct: 200 T---------------------FDKTEAAERAISEMDGSMVSSIQLKVSLARRQPIIESM 238
Query: 245 NDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
DA SS+ WS IA + S K HKD+R +Y++D+F
Sbjct: 239 TDATSSSMWSPIAANYSQKSAHKDRRDLKVYEEDLF 274
>gi|195326059|ref|XP_002029748.1| GM24927 [Drosophila sechellia]
gi|194118691|gb|EDW40734.1| GM24927 [Drosophila sechellia]
Length = 280
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 168/271 (61%), Gaps = 35/271 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+PEPE +S TLKRP +A+DAREVARKL+KSGAI P ++ + +Q FKRP+G ER
Sbjct: 37 PKPEPE---SSLTLKRPTDARDAREVARKLIKSGAI-PAIQKQTKQDQTSFKRPKGQERA 92
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T ++V++YQPFS+ Q + SE + +P+ + + T DR +++
Sbjct: 93 KRSTSETSVASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDR---EERGMP 149
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
E + A EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK
Sbjct: 150 EKVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEK---------- 199
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ PINDA+S
Sbjct: 200 -----------SRGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASS 248
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
S WS+IA +S KG+HKD R V YD+D
Sbjct: 249 SAVWSSIAASKSQKGSHKDHREMVQYDEDFL 279
>gi|195491140|ref|XP_002093434.1| GE21294 [Drosophila yakuba]
gi|194179535|gb|EDW93146.1| GE21294 [Drosophila yakuba]
Length = 280
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 168/271 (61%), Gaps = 35/271 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+PEPE +S TLKRP +A+DAREVARKL+KSGAI P ++ + +Q FKRP+G ER
Sbjct: 37 PKPEPE---SSLTLKRPTDARDAREVARKLIKSGAI-PAIQKQTKQDQTSFKRPKGQERA 92
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T ++V++YQPFS+ Q + SE + +P+ + + T DR +++
Sbjct: 93 KRSTSETSVASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDR---EERGMP 149
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
E + A EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK
Sbjct: 150 EKVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEK---------- 199
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ PINDA+S
Sbjct: 200 -----------SRGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASS 248
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
S WS+IA +S KG+HKD R V YD+D
Sbjct: 249 SAVWSSIAASKSQKGSHKDHREMVQYDEDFL 279
>gi|307202249|gb|EFN81733.1| Negative elongation factor E [Harpegnathos saltator]
Length = 272
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/275 (44%), Positives = 171/275 (62%), Gaps = 38/275 (13%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKR 69
+LQ KAP+ E ER + KRP EA+DAREVA+KL+KSG I + PKR EQ FKR
Sbjct: 31 ALQDLKAPKQEAERIPQAP--KRPTEARDAREVAKKLIKSGVITA-PKTPKRPEQ-SFKR 86
Query: 70 PRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPK----FLKVSKRETNDDRTPVDK 125
PRGLERKL T++ T+S+YQPFSA Q E+ E ++P+ + E+ DD+ VD
Sbjct: 87 PRGLERKLNSTEK-TISSYQPFSATQLEEEETEAARPRVKDLYDSFVSAESTDDKNTVDT 145
Query: 126 KVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVT 185
+ + P+ KP+GGNTIFV G I+E++L++HF FG I ++SMEVEK RGF+T
Sbjct: 146 Q-------SVTKPDIKPRGGNTIFVCGYKITEDYLKKHFQSFGNIINISMEVEKNRGFIT 198
Query: 186 FDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPIN 245
F E +D A ++AI+E++G+ V ++LKVSLARRQ + P+
Sbjct: 199 F---EKADAA------------------ERAISEMDGSMVSSIQLKVSLARRQPIIEPVT 237
Query: 246 DAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
D SS+ WS IA + S K HKD+R +Y++D+F
Sbjct: 238 D-MSSSMWSPIAANYSQKSVHKDRRDLKVYEEDLF 271
>gi|125978160|ref|XP_001353113.1| GA19284 [Drosophila pseudoobscura pseudoobscura]
gi|195173466|ref|XP_002027512.1| GL10297 [Drosophila persimilis]
gi|54641864|gb|EAL30614.1| GA19284 [Drosophila pseudoobscura pseudoobscura]
gi|194114413|gb|EDW36456.1| GL10297 [Drosophila persimilis]
Length = 282
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 168/272 (61%), Gaps = 35/272 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+PEPE +S TLKRP +A+DAREVARKL+KSGAI I + + +Q FKRP+G ER
Sbjct: 37 PKPEPE---SSLTLKRPTDARDAREVARKLIKSGAIPAIQKQQTKQDQTSFKRPKGQERA 93
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T +TV++YQPFS+ Q + SE + +P+ + + T DR +++V
Sbjct: 94 KRSTSETTVASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDR---EERVMA 150
Query: 130 E-SLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDS 188
E + P EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK
Sbjct: 151 EKAAAIDTPPPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEK--------- 201
Query: 189 PESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAA 248
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ PINDA+
Sbjct: 202 ------------SRGFVSFAKPESADRAIAEMHGKNVTGIVLQVQLARRQPQIEPINDAS 249
Query: 249 SSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
SS WS+IA +S KG+HKD R V Y+DD
Sbjct: 250 SSAVWSSIAASKSQKGSHKDHREMVKYNDDFL 281
>gi|195125830|ref|XP_002007378.1| GI12420 [Drosophila mojavensis]
gi|193918987|gb|EDW17854.1| GI12420 [Drosophila mojavensis]
Length = 281
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 165/271 (60%), Gaps = 34/271 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+ EPE ++ TLKRP +A+DAREVARKL+KSGAI I + + +Q FKRP+G ER
Sbjct: 37 PKQEPE---SALTLKRPTDARDAREVARKLIKSGAIPAIQKQQTKQDQTSFKRPKGQERA 93
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T +TV+AYQPFS+ Q + SE + +P+ + + T DR +++
Sbjct: 94 KRSTSETTVAAYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDR---EERGLT 150
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
E + EKP+ GNTIFV G ++EEFL++ F+ +G I +VSME+EK
Sbjct: 151 EKVTLDATQPEKPRAGNTIFVSGNKVTEEFLKKTFNDYGTIVNVSMEIEK---------- 200
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ PINDA+S
Sbjct: 201 -----------SRGFVSFAKPESADRAIAEMHGKNVNGIVLQVQLARRQPQIEPINDASS 249
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
S WS+IA +S KG+HKD R V YDDD
Sbjct: 250 SAVWSSIAASKSQKGSHKDLRQMVQYDDDFL 280
>gi|350396568|ref|XP_003484595.1| PREDICTED: negative elongation factor E-like [Bombus impatiens]
Length = 275
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 121/275 (44%), Positives = 166/275 (60%), Gaps = 37/275 (13%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKR 69
+LQ KAP+ E ER + KRP EA+DAREVA+KL+KSG I + PKR EQ FKR
Sbjct: 33 ALQDLKAPKQEAERIPQAP--KRPTEARDAREVAKKLIKSGVITA-PKTPKRPEQ-SFKR 88
Query: 70 PRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPK----FLKVSKRETNDDRTPVDK 125
PRGL RKL T++ TVS+YQPFSA Q E+ E +P+ + + +DRT D
Sbjct: 89 PRGLVRKLNSTEK-TVSSYQPFSATQMEEEETEAVRPRVKDLYDSFVSAQDPEDRTSRDI 147
Query: 126 KVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVT 185
+ + + KP+ GNTIFV G ISE+FL++HF FG I ++SME EK RGFVT
Sbjct: 148 QPPSKQEM-------KPRAGNTIFVCGYKISEDFLKKHFQTFGNIINISMETEKNRGFVT 200
Query: 186 FDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPIN 245
FD E++++AI+E++G+ V ++LKVSLARRQ + +
Sbjct: 201 ---------------------FDKTEAAERAISEMDGSMVSSIQLKVSLARRQPIIEAMT 239
Query: 246 DAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
DA SS+ WS IA + S K HKD+R ++Y++D+F
Sbjct: 240 DATSSSMWSPIAANYSQKSAHKDRRDLIVYEEDLF 274
>gi|195375929|ref|XP_002046750.1| Nelf-E [Drosophila virilis]
gi|194153908|gb|EDW69092.1| Nelf-E [Drosophila virilis]
Length = 281
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 164/271 (60%), Gaps = 34/271 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+ EPE ++ TLKRP +A+DAREVARKL+KSGAI I + + +Q FKRP+G ER
Sbjct: 37 PKQEPE---SALTLKRPTDARDAREVARKLIKSGAIPAIQKQQTKQDQTSFKRPKGQERA 93
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T +TV+AYQPFS+ Q + SE + +P+ + + T DR +++
Sbjct: 94 KRSTSETTVAAYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDR---EERGLT 150
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
E + EKP+ GNTIFV G ++EEFL++ F+ +G I +VSME+EK
Sbjct: 151 EKVTLDTTQPEKPRAGNTIFVSGNKVTEEFLKKTFNDYGTIVNVSMEIEK---------- 200
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
+RGFV+F PES+D+AI E++G V G+ L+V LARRQ ++ PINDA+S
Sbjct: 201 -----------SRGFVSFAKPESADRAIAEMHGKSVTGIVLQVQLARRQPQIEPINDASS 249
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
S WS+IA +S KG+HKD R V Y+DD
Sbjct: 250 SAVWSSIAASKSQKGSHKDLRQMVQYNDDFL 280
>gi|38372380|sp|Q95ZE9.1|NELFE_DROVI RecName: Full=Negative elongation factor E
gi|14422299|emb|CAC41628.1| hypothetical protein [Drosophila virilis]
Length = 281
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 164/270 (60%), Gaps = 32/270 (11%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+ EPE ++ TLKRP +A+DAREVARKL+KSGAI I + + +Q FKRP+G ER
Sbjct: 37 PKQEPE---SALTLKRPTDARDAREVARKLIKSGAIPAIQKQQTKQDQTSFKRPKGQERA 93
Query: 77 LTETDRSTVSAYQPFSAIQPEDS-EPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTR 135
T +TV+AYQPFS+ Q + + E + S+ +K R N + ++V E LT
Sbjct: 94 KRSTSETTVAAYQPFSSTQNDVAQETIISE--IIKEEPRRQNLYQHFATERVREERGLTE 151
Query: 136 -----LAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPE 190
EKP+ GNTIFV G ++EEFL++ F+ +G I +VSME+EK
Sbjct: 152 KVTLDTTQPEKPRAGNTIFVSGNKVTEEFLKKTFNDYGTIVNVSMEIEK----------- 200
Query: 191 SSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS 250
+RGFV+F PES+D+AI E++G V G+ L+V LARRQ ++ PINDA+SS
Sbjct: 201 ----------SRGFVSFAKPESADRAIAEMHGKSVTGIVLQVQLARRQPQIVPINDASSS 250
Query: 251 TTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
WS+IA +S KG+HKD R V Y+DD
Sbjct: 251 AVWSSIAASKSQKGSHKDLRQMVQYNDDFL 280
>gi|194748947|ref|XP_001956902.1| GF10157 [Drosophila ananassae]
gi|190624184|gb|EDV39708.1| GF10157 [Drosophila ananassae]
Length = 281
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 167/271 (61%), Gaps = 34/271 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+PEPE +S TLKRP +A+DAREVARKL+KSGAI I + + +Q FKRP+G ER
Sbjct: 37 PKPEPE---SSLTLKRPADARDAREVARKLIKSGAIPAIQKQQTKQDQTSFKRPKGQERA 93
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T +TV++YQPFS+ Q + SE + +P+ + + T DR ++ +
Sbjct: 94 KRSTSETTVASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDRE--ERGLVE 151
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
+S + P EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK
Sbjct: 152 KSPMDSAQP-EKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEK---------- 200
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ INDA+S
Sbjct: 201 -----------SRGFVSFAKPESADRAIAEMHGKNVNGINLQVQLARRQPQIEAINDASS 249
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
S WS+IA +S KG+HKD R V Y++D
Sbjct: 250 SAVWSSIAASKSQKGSHKDHREMVHYNEDFL 280
>gi|195435816|ref|XP_002065875.1| GK20547 [Drosophila willistoni]
gi|194161960|gb|EDW76861.1| GK20547 [Drosophila willistoni]
Length = 279
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/269 (43%), Positives = 167/269 (62%), Gaps = 32/269 (11%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+ EPE ++ TLKRP +A+DAREVARKL+KSGAI I + + +Q FKRP+G ER
Sbjct: 37 PKQEPE---SALTLKRPTDARDAREVARKLIKSGAIPAIQKQQTKQDQTSFKRPKGQERA 93
Query: 77 LTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLKVSKRETNDDR---TPVDKKVYGESLL 133
T ++V+AYQPFS+ Q + ++ ++ + +K R N + T D++ G +
Sbjct: 94 KRSTSETSVAAYQPFSSTQNDVAQEIN---EIIKEEPRRQNLYQHFATERDREERGLTEK 150
Query: 134 TRL-APN-EKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPES 191
T L P EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK
Sbjct: 151 TTLDTPQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEK------------ 198
Query: 192 SDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASST 251
+RGFV+F PES+D+AI E++G V G+ L+V LARRQ ++ PINDA+SS
Sbjct: 199 ---------SRGFVSFAKPESADRAIAEMHGKSVNGINLQVQLARRQPQIEPINDASSSA 249
Query: 252 TWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
WS+IA +S KG+HKD R V Y++D
Sbjct: 250 VWSSIAASKSQKGSHKDHREMVQYNEDFL 278
>gi|195013756|ref|XP_001983899.1| GH16149 [Drosophila grimshawi]
gi|193897381|gb|EDV96247.1| GH16149 [Drosophila grimshawi]
Length = 281
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 163/271 (60%), Gaps = 34/271 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+ EPE + TLKRP +A+DAREVARKL+KSGAI I + + +Q FKRP+G ER
Sbjct: 37 PKQEPE---SVLTLKRPTDARDAREVARKLIKSGAIPAIQKQQTKQDQTSFKRPKGQERA 93
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T +TV+AYQPFS+ Q + SE + +P+ + + T DR +++
Sbjct: 94 KRSTSETTVAAYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDR---EERGLT 150
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
E + EKP+ GNTIFV G ++EEFL++ F+ +G I +VSME+EK
Sbjct: 151 EKVTLDATQPEKPRAGNTIFVSGNKVTEEFLKKTFNDYGTIVNVSMEIEK---------- 200
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
+RGFV+F PES+D+AI E++G + + L+V LARRQ ++ PINDA+S
Sbjct: 201 -----------SRGFVSFAKPESADRAIAEMHGKSINSIVLQVQLARRQPQIEPINDASS 249
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
S WS+IA +S KG+HKD+R V Y+DD
Sbjct: 250 SAVWSSIAASKSQKGSHKDQRQMVQYNDDFL 280
>gi|321457448|gb|EFX68534.1| hypothetical protein DAPPUDRAFT_301427 [Daphnia pulex]
Length = 277
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 164/276 (59%), Gaps = 47/276 (17%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+PEPE+T A LKRP EA+DAREVA+KLLKSGAI+ I +P ++ E GFKR RGLERK
Sbjct: 37 PKPEPEKTPA---LKRPAEARDAREVAKKLLKSGAISAIPKPSEKTETTGFKRSRGLERK 93
Query: 77 LTETDRSTVSAYQPFSAIQPE---DSEPVDSK-------PKFLK--VSKRETNDDRTPVD 124
L+ +DR+ S +QPFS+ Q + E V + P + +S RE+ D P
Sbjct: 94 LSSSDRAP-SGFQPFSSSQGSMVSNEEHVTHEARTKSKVPNLYENFISSRES--DAEPAS 150
Query: 125 KKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFV 184
++ P E P V G I+EE L++ F FG + ++SME+EK
Sbjct: 151 --------ISPTNPKETPTSPAISPVFGYSITEEILKKAFQSFGNVVNISMEIEK----- 197
Query: 185 TFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPI 244
+C GFVTFD S+D+AI+E+NG+ V G++LKVSLARRQ + PI
Sbjct: 198 --------------NC--GFVTFDKTTSADRAISEMNGSMVSGIQLKVSLARRQPVIEPI 241
Query: 245 NDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
NDA+SS TWS IA S KG++KDKR V Y++++F
Sbjct: 242 NDASSSATWSTIAARNSQKGSYKDKRDLVTYEEELF 277
>gi|307176913|gb|EFN66240.1| Negative elongation factor E [Camponotus floridanus]
Length = 271
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 118/280 (42%), Positives = 164/280 (58%), Gaps = 48/280 (17%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKR 69
+LQ KAP+ E ER + KRP EA+DAREVA+KL+KSG I + PKR EQ FKR
Sbjct: 30 ALQDLKAPKQEVERIPQAP--KRPTEARDAREVAKKLIKSGVITA-PKTPKRPEQ-TFKR 85
Query: 70 PRGLERKLTETDRSTVSAYQPFSAIQ---------PEDSEPVDSKPKFLKVSKRETNDDR 120
RGLERKL T++ TVS+YQPFSA Q P + +S R ND +
Sbjct: 86 SRGLERKLNSTEK-TVSSYQPFSATQEEEETEAVRPRVKDLYNSFVGAQDTGDRNANDTQ 144
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKG 180
TP +++ KP+ GNTIFV G I+E++L++HF FG I ++SMEVEK
Sbjct: 145 TPSKQEI-------------KPRAGNTIFVCGYKITEDYLKKHFQSFGNIVNISMEVEKN 191
Query: 181 RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
RGF+T F+ E++++AI+E++G+ V ++LKVSLARRQ
Sbjct: 192 RGFIT---------------------FEKAEAAERAISEMDGSMVSSIQLKVSLARRQPI 230
Query: 241 VAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
+ P++D SS+ WS IA + S K HKD+R +Y++D+F
Sbjct: 231 IEPVSDTMSSSMWSPIAANYSQKSAHKDRRDLKVYEEDLF 270
>gi|340716737|ref|XP_003396851.1| PREDICTED: negative elongation factor E-like [Bombus terrestris]
Length = 275
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/275 (43%), Positives = 165/275 (60%), Gaps = 37/275 (13%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKR 69
+LQ KAP+ E ER + KRP EA+DAREVA+KL+KSG I + KR EQ FKR
Sbjct: 33 ALQDLKAPKQETERIPQAP--KRPTEARDAREVAKKLIKSGVITA-PKTTKRPEQ-SFKR 88
Query: 70 PRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPK----FLKVSKRETNDDRTPVDK 125
PRGL RKL T++ TVS+YQPFSA Q E+ E +P+ + + +DRT D
Sbjct: 89 PRGLVRKLNSTEK-TVSSYQPFSATQMEEEETETVRPRVKDLYDSFVSAQDPEDRTSRDI 147
Query: 126 KVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVT 185
+ + + KP+ GNTIFV G ISE+FL++HF FG I ++SME EK RGFVT
Sbjct: 148 QSPSKQEM-------KPRAGNTIFVCGYKISEDFLKKHFQTFGNIINISMETEKNRGFVT 200
Query: 186 FDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPIN 245
FD E++++AI+E++G+ V ++LKVSLARRQ + +
Sbjct: 201 ---------------------FDKTEAAERAISEMDGSMVSSIQLKVSLARRQPIIEAMT 239
Query: 246 DAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
DA SS+ WS IA + S K HKD+R ++Y++D+F
Sbjct: 240 DATSSSMWSPIAANYSQKSAHKDRRDLIVYEEDLF 274
>gi|332023297|gb|EGI63551.1| Negative elongation factor E [Acromyrmex echinatior]
Length = 271
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/280 (41%), Positives = 166/280 (59%), Gaps = 48/280 (17%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKR 69
+LQ KAP+ E ER + KRP EA+DAREVA+KL+KSG I + PKR EQ FKR
Sbjct: 30 ALQDLKAPKQEAERIPQAP--KRPTEARDAREVAKKLIKSGVITA-PKTPKRPEQ-TFKR 85
Query: 70 PRGLERKLTETDRSTVSAYQPFSAIQPED-SEPVDSKPKFL--------KVSKRETNDDR 120
RGLERKL T++ T+S+YQPFSA+Q E+ +E V K K L +R T+D
Sbjct: 86 SRGLERKLNSTEK-TISSYQPFSAMQEEEETETVRPKVKDLYNNFVGAQNTGERNTSDAP 144
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKG 180
P +++ KP+ GNTI+V G I+E++L++HF FG I +SME EK
Sbjct: 145 APAKQEI-------------KPRAGNTIYVCGYKITEDYLKKHFQSFGNIIHISMEAEKN 191
Query: 181 RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GF+TF+ E++++AI+E++G+ V ++LKVSLARRQ
Sbjct: 192 HGFITFEKA---------------------EAAERAISEMDGSMVSSIQLKVSLARRQPI 230
Query: 241 VAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
+ P++D SS+ WS IA + S K HKD+R +Y++D+F
Sbjct: 231 IEPVSDTMSSSMWSPIAANYSQKSAHKDRRELKVYEEDLF 270
>gi|170027620|ref|XP_001841695.1| negative elongation factor E [Culex quinquefasciatus]
gi|167862265|gb|EDS25648.1| negative elongation factor E [Culex quinquefasciatus]
Length = 281
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/272 (42%), Positives = 162/272 (59%), Gaps = 45/272 (16%)
Query: 31 KRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQP 90
KRP +A+DAREVARKLLKSGAI I +P + E FKRP+G ERK + + S + YQ
Sbjct: 33 KRPADARDAREVARKLLKSGAIQAIQKPQIKQE-SSFKRPKGQERKRSHQESSPGAQYQS 91
Query: 91 FSAIQ-PEDSEPVD----SKPKFLKVSKRETNDDRTPVDKK------VYG---------- 129
FS+++ P + PV S P + ++ D TPV+K+ +Y
Sbjct: 92 FSSVETPPATNPVSPSVISTPTTPTAANPSSSPD-TPVEKEPPRVQNLYQQFANERDREE 150
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
+SL +P +KP+ GNT++V G ++E+FL++HF FG+I ++SME+EKGRGF+TF
Sbjct: 151 QSLKAGDSPRDKPRSGNTVYVSGNKVTEDFLKKHFGEFGEILNISMEIEKGRGFITFSKT 210
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
ES+D+AI+D ++ V G++L+V LARRQ ++ PINDA S
Sbjct: 211 ESADRAISD---------------------LHSKTVGGIQLQVQLARRQPQINPINDAGS 249
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYD-DDIF 280
S WSA+A ++S KG HKD R V YD DDIF
Sbjct: 250 SAAWSALATNRSQKGKHKDNRELVCYDHDDIF 281
>gi|157133920|ref|XP_001663073.1| hypothetical protein AaeL_AAEL003077 [Aedes aegypti]
gi|108881442|gb|EAT45667.1| AAEL003077-PA [Aedes aegypti]
Length = 279
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/273 (41%), Positives = 162/273 (59%), Gaps = 39/273 (14%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPR-GLER 75
P+ EPE+ KRP +A+DAREVARKL+KSGAI I +P + E FKRP+ G ER
Sbjct: 37 PKQEPEKNLIP---KRPADARDAREVARKLIKSGAIQAIQKPQAKQE-SSFKRPKAGQER 92
Query: 76 KLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYG------ 129
K ++ + S + YQ FS+++ P S + E + RTP + +
Sbjct: 93 KRSQQESSPGAQYQSFSSVETPPPNPASSPD-----TPTEKDPARTPNLYQQFANERDKE 147
Query: 130 -ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDS 188
++ +P +KP+ GNT++V G ++EEFL++HF FG+I ++SME+EKGRGF+TF
Sbjct: 148 EQAGKANDSPRDKPRSGNTVYVSGNKVTEEFLKKHFIEFGEILNISMEIEKGRGFITF-- 205
Query: 189 PESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAA 248
ES+DKAI+E++ V G++L+V LARRQ ++ PINDA
Sbjct: 206 -------------------SKTESADKAISELHSKTVGGIQLQVQLARRQPQINPINDAG 246
Query: 249 SSTTWSAIACHQSLKGNHKDKRHQVIYD-DDIF 280
SS+TWSA+A ++S KG HKD R V YD DDIF
Sbjct: 247 SSSTWSALATYRSQKGKHKDNRELVCYDHDDIF 279
>gi|158295598|ref|XP_316305.4| AGAP006237-PA [Anopheles gambiae str. PEST]
gi|157016115|gb|EAA10770.4| AGAP006237-PA [Anopheles gambiae str. PEST]
Length = 275
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/272 (42%), Positives = 158/272 (58%), Gaps = 41/272 (15%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEG-FKRPRGLER 75
P+ EPE+ KRP +A+DAREVARKLLKSGAI I +P + +QEG FKRP+G ER
Sbjct: 37 PKQEPEKNLLP---KRPADARDAREVARKLLKSGAIQAIQKP--QPKQEGSFKRPKGQER 91
Query: 76 KLTETDRSTVSAYQPFSAI------QPEDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYG 129
K T+ + S YQ S P + E + + + + +D++ DK G
Sbjct: 92 KRTQPEMSPAGQYQSASTTPAETPNSPAEKETSRVQNLYQQFANEREKEDQS--DKSKPG 149
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
A +KP+ GNT++V G ++E FL++HFS FG+I ++SME+EKGRGF+TF
Sbjct: 150 AD-----ASKDKPRSGNTVYVSGNKVTENFLKKHFSDFGEILNISMEIEKGRGFITFSKT 204
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
ES+DKAI D ++ V G++L+V LARRQ ++ PINDA S
Sbjct: 205 ESADKAIAD---------------------LHSKTVGGIQLQVQLARRQPQINPINDAGS 243
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYD-DDIF 280
S WSA+A ++S KG HKD R V YD DDIF
Sbjct: 244 SAVWSALATNRSQKGKHKDNRELVCYDHDDIF 275
>gi|312378489|gb|EFR25051.1| hypothetical protein AND_09950 [Anopheles darlingi]
Length = 298
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 159/291 (54%), Gaps = 56/291 (19%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRP-PKRCEQEGFKRPRGLER 75
P+PEPE+ KRP +A+DAREVARKLLKSGAI I +P PK + FKRP+ ER
Sbjct: 37 PKPEPEKPLLP---KRPADARDAREVARKLLKSGAIQAIQKPQPK--QDSSFKRPKRQER 91
Query: 76 KLTETDRS------TVSAYQPFSAIQPE-DSEPVDSKPKFLKVSKRETNDDRTPVDKK-- 126
K DRS T + YQ F E +S P P S +PVDK+
Sbjct: 92 K---EDRSQSELSPTTTQYQSFGTASAEYESGPSSHSPTAGTSSFSSAERPTSPVDKEPI 148
Query: 127 ----VY------------GESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKI 170
+Y E L T E+P+ GNT++V G ++E+FL++HF +G I
Sbjct: 149 RVQNLYQQFTTEREKEDQSERLKTPDGAKERPRSGNTVYVSGNKVTEDFLKKHFGEYGDI 208
Query: 171 CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKL 230
++SME+EKGRGF+T F S ES+DKAI E++ V G+ L
Sbjct: 209 LNISMEIEKGRGFIT---------------------FSSTESADKAINELHSKTVGGILL 247
Query: 231 KVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYD-DDIF 280
+V LARRQ +++PIN+A SS WSA+A ++S KG HKD R V YD +D+F
Sbjct: 248 QVQLARRQPQISPINEAGSSAVWSALATNRSQKGKHKDNRELVCYDHEDVF 298
>gi|383853078|ref|XP_003702051.1| PREDICTED: negative elongation factor E-like [Megachile rotundata]
Length = 275
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/281 (43%), Positives = 169/281 (60%), Gaps = 49/281 (17%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKR 69
+LQ K+P+ E ER T KRP EA+DAREVA+KL+KSG I + PKR EQ FKR
Sbjct: 33 ALQDLKSPKQEIERI--PQTPKRPTEARDAREVAKKLIKSGVITA-PKTPKRPEQ-SFKR 88
Query: 70 PRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLK-----VSKRET-----NDD 119
PRGL RKL T++ TVS+YQPFSA Q E+ E ++P+ VS ++T ND
Sbjct: 89 PRGLVRKLNSTEK-TVSSYQPFSATQMEEEETETARPRVKDLYDSFVSAQDTEDRTGNDT 147
Query: 120 RTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEK 179
++P +++ KP+ GNTIFV G ISE+FL++HF FG I ++SME EK
Sbjct: 148 QSPSKQEI-------------KPRAGNTIFVCGYKISEDFLKKHFQTFGNIINISMEAEK 194
Query: 180 GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
GF+TF D ES+++AI+E++G+ V ++LKVSLARRQ
Sbjct: 195 NHGFITF---------------------DKSESAERAISEMDGSMVSSIQLKVSLARRQP 233
Query: 240 KVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
+ I+D +SS+ WS IA + S K HKD+R +Y++D+F
Sbjct: 234 IIESISDVSSSSMWSPIAANYSQKSVHKDRRDLKVYEEDLF 274
>gi|156541485|ref|XP_001600344.1| PREDICTED: negative elongation factor E-like [Nasonia vitripennis]
Length = 210
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 129/194 (66%), Gaps = 21/194 (10%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKR 69
+LQ K P+PEPER + KRP EA+DAREVA+KL+KSG I + PKR EQ FKR
Sbjct: 30 ALQDLKTPKPEPERIPQAP--KRPTEARDAREVAKKLIKSGVIT-APKTPKRPEQ-AFKR 85
Query: 70 PRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLK------VSKRETNDDRTPV 123
PRGLERKL T++ TVS+YQPFSA QPE+ + S+PK +K VS +T D P
Sbjct: 86 PRGLERKLNSTEK-TVSSYQPFSATQPEEDDTEPSRPKVVKGLYDSFVSATDTEDRGAP- 143
Query: 124 DKKVYGESLLTRLAPNE-KPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRG 182
+K + + PNE KP GNTIFV G ISE+FL++HFS FG I ++ME EK +G
Sbjct: 144 EKSISSK-------PNETKPIKGNTIFVSGYKISEDFLKKHFSTFGNILKITMEAEK-KG 195
Query: 183 FVTFDSPESSDKAI 196
F+TF+ PES+++ I
Sbjct: 196 FITFEKPESAERKI 209
>gi|225717970|gb|ACO14831.1| Negative elongation factor E [Caligus clemensi]
Length = 294
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 156/293 (53%), Gaps = 48/293 (16%)
Query: 9 KSLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQ-EGF 67
+ L A KA +P ++A K+ +EA+D++EVA+KLL++GA+ I + ++ E+ +G
Sbjct: 29 RQLAALKASKP----SEAEKVSKKVMEARDSKEVAKKLLRTGALQAIQKSVEKNEKSKGL 84
Query: 68 KRPRGLERKLTETDRSTVSAYQPFSAIQ----------------PEDSEPVDSKPKFLKV 111
KR +G ERKL D +S YQPFSA P S
Sbjct: 85 KRSQGWERKL--ADPRVLSGYQPFSATHGPGGGFDTGADDLNPDPPPSAAPIPSNPPPSS 142
Query: 112 SKRETNDDRTPVDKKV--YGESLLTRLAPNEKP--KGGNTIFVQGAGISEEFLRQHFSIF 167
+ N + KKV ES ++ E+ K NT++V G ISEE LR+ F+
Sbjct: 143 NSTNNNTNNGNNGKKVKDLYESFVSARNREERKADKSANTVYVHGFDISEELLRKTFTPV 202
Query: 168 GKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQG 227
GKI ++SMEV+K GF+TFD ES++ AI+D + T G
Sbjct: 203 GKIVNISMEVDKNCGFITFDKEESAECAISD---------------------YHETTTHG 241
Query: 228 VKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
+++KVS ARRQ++V PINDA+SS TWS+IA S KG DKR+ VIYD++IF
Sbjct: 242 IQIKVSKARRQIQVDPINDASSSATWSSIAASHSQKGAFSDKRNLVIYDEEIF 294
>gi|312381883|gb|EFR27517.1| hypothetical protein AND_05739 [Anopheles darlingi]
Length = 462
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 160/306 (52%), Gaps = 63/306 (20%)
Query: 6 LTKKSLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQE 65
L KK+LQA K P+PE E+ K+P +A+DAREVARKLLKSGAI +P + ++
Sbjct: 49 LQKKALQAFKTPKPELEKNIIP---KKPADARDAREVARKLLKSGAIQAFQKPQIK-QES 104
Query: 66 GFKRPRGLERKL---TETDRSTVSAYQPFSA----------------------------I 94
FKRP+G E+K E + Y+ F A +
Sbjct: 105 SFKRPKGQEQKRAQSVELSNGGSTQYRSFGAAAAGTEQIGPSGEQVGDGMLTPASGTPAL 164
Query: 95 QPEDS---EPVDSKPK---FLKVSKRETND-DRTPVDKKVYGESLLTRLAPNEKPKGGNT 147
P DS E + + P L+++ + + DR+ V Y S++ + EKP+ GNT
Sbjct: 165 APTDSPHTEELAAGPASQCTLRLNLYQQYERDRSEVVDPAYNSSVVEEESAKEKPRTGNT 224
Query: 148 IFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTF 207
++V G ++EEFL+++F +G+I ++SME+EKGRGFV T+
Sbjct: 225 VYVSGNKVTEEFLKKYFGEYGEILNISMEIEKGRGFV---------------------TY 263
Query: 208 DSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHK 267
ES+D++I E++ V G++L+V LARRQ ++ PIN+A SS WSA+ KG +
Sbjct: 264 AKIESADRSIAELHSKTVGGIQLQVQLARRQPQINPINEAGSSAVWSALGHPPEAKGPND 323
Query: 268 DKRHQV 273
+RH +
Sbjct: 324 RERHSI 329
>gi|346469153|gb|AEO34421.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/284 (37%), Positives = 157/284 (55%), Gaps = 41/284 (14%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRP----IEAK-DAREVARKLLKSGAINPIVRPPKRCEQ 64
+LQ K P+PEP Q +TL++ E+K DA+EVA+KLLKSGAI+ I K E+
Sbjct: 29 ALQQNKTPKPEPPPVQ--TTLRKGQDQVSESKPDAKEVAKKLLKSGAISAIKVENK--ER 84
Query: 65 EGFKRPRGLERKLTETDRSTVSAYQPFSAIQP--EDSEPVDS-----KPKFLKVSKRETN 117
GFKR + ERK + DR YQP++A P +DSE S +P + + +
Sbjct: 85 HGFKRSKASERKRSLNDRPGGIGYQPYAANHPTEDDSEATGSAASTSRPAVKSLYESFVS 144
Query: 118 DDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEV 177
D + E+ +R + EKP+ NT++V GAG+SE+ LR F+ FG + ++SME+
Sbjct: 145 GGNLDEDDPKHLEA--SRDSGPEKPRQKNTLYVHGAGVSEDLLRGAFAPFGALLNISMEL 202
Query: 178 EKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
+K GFV TF+ ES++KA+ E+NG V G+KL+VS ARR
Sbjct: 203 DKNCGFV---------------------TFEKIESAEKAVGEMNGATVSGIKLRVSFARR 241
Query: 238 QLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDD-DIF 280
Q + P S TW+++A + S KG + D R V+Y+D D+F
Sbjct: 242 Q-PLIPQQSDGSPATWTSMAANYSQKGGNADTRKAVLYNDLDLF 284
>gi|195588803|ref|XP_002084147.1| GD12975 [Drosophila simulans]
gi|194196156|gb|EDX09732.1| GD12975 [Drosophila simulans]
Length = 418
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 92/141 (65%), Gaps = 21/141 (14%)
Query: 140 EKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDD 199
EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK
Sbjct: 298 EKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEK-------------------- 337
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA
Sbjct: 338 -SRGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAAS 396
Query: 260 QSLKGNHKDKRHQVIYDDDIF 280
+S KG+HKD R V YD+D
Sbjct: 397 KSQKGSHKDHREMVQYDEDFL 417
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 42/54 (77%), Gaps = 4/54 (7%)
Query: 20 EPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGL 73
EPE +S TLKRP++A+DAREVARKL+KSGAI P ++ + +Q FKRP+G+
Sbjct: 40 EPE---SSLTLKRPMDARDAREVARKLIKSGAI-PAIQKQTKQDQTSFKRPKGI 89
>gi|427792869|gb|JAA61886.1| Putative negative elongation factor e, partial [Rhipicephalus
pulchellus]
Length = 315
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 151/287 (52%), Gaps = 44/287 (15%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRP----IEAK-DAREVARKLLKSGAINPIVRPPKRCEQ 64
+LQ K P+ EP +TL++ E+K DA+EVA+KLLKSGAI+ I K E+
Sbjct: 57 ALQQTKTPKQEP--PPVPTTLRKGHDQVSESKPDAKEVAKKLLKSGAISAIKVENK--ER 112
Query: 65 EGFKRPRGLERKLTETDRSTVSAYQPFSAIQP--EDSEPVDS--------KPKFLKVSKR 114
GFKR + ERK + DR YQP++A P +D E + +P + +
Sbjct: 113 HGFKRSKASERKRSLNDRPGGIGYQPYAANHPTEDDLEATGTSSSSSSSSRPAMKSLYES 172
Query: 115 ETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVS 174
+ D + ES R + EKP+ NT++V GAG+SE+ LR F+ FG + ++S
Sbjct: 173 FVSGGNLDEDDPKHLES--PRESAPEKPRQKNTLYVHGAGVSEDLLRGAFAPFGALLNIS 230
Query: 175 MEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSL 234
ME++K GFVTF+ DCA +KA+ E+NG V G+KL+VS
Sbjct: 231 MELDKNCGFVTFEK---------IDCA------------EKAVLEMNGATVSGIKLRVSF 269
Query: 235 ARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDD-DIF 280
ARRQ + P + S W+A+A + KG D R V+Y+D D+F
Sbjct: 270 ARRQ-PLIPQSSDGSPANWTAMASNYGQKGGTTDNRKAVLYNDLDLF 315
>gi|363743130|ref|XP_003642781.1| PREDICTED: negative elongation factor E-like [Gallus gallus]
Length = 310
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 142/281 (50%), Gaps = 60/281 (21%)
Query: 33 PIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFS 92
P++ A E A+ L+KSGAI+ I + GFKR R LE KL + ++ +QPF
Sbjct: 56 PVDTATATEQAKLLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPAPTFQPFQ 112
Query: 93 -AIQPEDSEPVDSKPK-------FLKVSKR-------------ETNDDRTPVDKKVYGES 131
++ +D P +P+ F+ S+R + + T S
Sbjct: 113 RSVSADDDTPESRRPQRKSLYESFVSASERLREPEAGGGVGTPLSGESATAAWTGSRSRS 172
Query: 132 LLTRLAPNEK----------PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGR 181
L + P + P+ GNT++V GA +S E LR FS FG I +S+
Sbjct: 173 LRSAGGPRARGSDSFPERPSPRKGNTLYVHGAELSPELLRSAFSPFGAIIDLSL------ 226
Query: 182 GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
DSP +CA FVT++ ES+D+A+ E+NG VQ V+L+VS+AR+Q
Sbjct: 227 -----DSPR--------NCA--FVTYEKMESADQAMAELNGAVVQDVQLRVSIARKQ--- 268
Query: 242 APINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDDDIFG 281
P+ DAA+ + W ++A S KG+H+DKR QV+Y++D+FG
Sbjct: 269 -PLLDAATGKSLWGSLAVKNSAKGSHRDKRAQVVYNEDLFG 308
>gi|326933589|ref|XP_003212884.1| PREDICTED: negative elongation factor E-like [Meleagris gallopavo]
Length = 271
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 141/292 (48%), Gaps = 71/292 (24%)
Query: 33 PIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFS 92
P++ A E A+ L+KSGAI+ I + GFKR R LE KL + ++ +QPF
Sbjct: 6 PVDTATATEQAKLLVKSGAISAIK---AETKNSGFKRSRTLEGKLKDPEKGPAPTFQPFQ 62
Query: 93 -AIQPEDSEPVDSKPK-------FLKVSKR----ETNDDRT------------------- 121
++ +D P +P+ F+ S+R E R
Sbjct: 63 RSVSADDDTPESRRPQRKSLYESFVSASERLREPEAGGGRGDPPERGERDRRLDWEQEPE 122
Query: 122 PVDKKVYGESLLTRLAPN-----------EKPKGGNTIFVQGAGISEEFLRQHFSIFGKI 170
P ++ L+ + P P+ GNT++V GA +S E LR F+ FG I
Sbjct: 123 PEERGAVSARRLSGVPPRCPPGSDSFPERPSPRKGNTLYVHGAELSPELLRSAFAPFGAI 182
Query: 171 CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKL 230
+S+ DSP +CA FVT++ ES+D+A+ E+NG VQ V+L
Sbjct: 183 IDLSL-----------DSPR--------NCA--FVTYEKMESADQAMAELNGAVVQDVQL 221
Query: 231 KVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDDDIFG 281
+VS+AR+Q P+ DAA+ + W A S KG+H+DKR QV+Y++D+FG
Sbjct: 222 RVSIARKQ----PLLDAATGKSLWGTTAVKNSAKGSHRDKRAQVVYNEDLFG 269
>gi|405966258|gb|EKC31565.1| Negative elongation factor E [Crassostrea gigas]
Length = 264
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 144/289 (49%), Gaps = 55/289 (19%)
Query: 3 KYTLTKKSLQAQKAPR-PEPERTQASST-LKRPI--EAKDAREVARKLLKSGAINPIVRP 58
KY KK +A +A R +PER QA + KRP A+DA+E A+KLLKSG+I ++
Sbjct: 20 KYATLKKKKKALQAIRTAKPERVQAEAAPAKRPAAESAEDAKEQAKKLLKSGSIK--IKD 77
Query: 59 PKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSAIQPE----DSEPVDSKPKF--LKVS 112
P++ T +QPFSA E D +P+ L S
Sbjct: 78 PEKT--------------------PTAVGFQPFSAAHAEEEEKDGNKTSQRPRMRGLYDS 117
Query: 113 KRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICS 172
DR +++ R + PK GNTI+V G GI+EE LR+ FS G I +
Sbjct: 118 FVSGGYDREREERREERAQQERRDRDYDLPKKGNTIYVNGLGITEEILRKAFSNIGTILN 177
Query: 173 VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232
++ME +K GFV +F+ ES+D AI EVNG V+G++LKV
Sbjct: 178 INMERDKHVGFV---------------------SFERMESADTAIAEVNGAMVEGIQLKV 216
Query: 233 SLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYD-DDIF 280
++ARRQ ND S+ +WS+IA S K ++KDKR V YD +DIF
Sbjct: 217 TMARRQPSFDQNND-QSTKSWSSIAASNSQKSSYKDKREIVSYDAEDIF 264
>gi|328719180|ref|XP_001947788.2| PREDICTED: negative elongation factor E-like [Acyrthosiphon pisum]
Length = 217
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 115/192 (59%), Gaps = 19/192 (9%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIE-AKDAREVARKLLKSGAINPIVRPPKRCEQEGFK 68
+LQ QK PRPEPE + + KRP E A+DARE+A+KLLKSGAI PI + P R +QE FK
Sbjct: 30 ALQVQKTPRPEPEPSPVLNP-KRPKETARDAREIAKKLLKSGAIGPIKKVPNRTDQESFK 88
Query: 69 RPRGLERKLTETDRSTVSAYQPFSAIQP--EDSEPV-DSKPKFLKVSKRETNDDRTPVDK 125
RP G+ERKL T ++ +S+YQPFSA P + +E + DS PK +K TN
Sbjct: 89 RPCGMERKLLITTQA-LSSYQPFSAASPVIKTTEVIPDSTPKATSTAKF-TNL----YSS 142
Query: 126 KVYGESLLTRLAPN------EKPKGGN-TIFVQG-AGISEEFLRQHFSIFGKICSVSMEV 177
V S T AP+ E+P + TIFV G + ++EEFLR FS FG I +++ME+
Sbjct: 143 FVSSTSKTTPPAPSSPEPVPEQPTRKDITIFVGGSSSMTEEFLRSTFSKFGTIINITMEI 202
Query: 178 EKGRGFVTFDSP 189
EK F P
Sbjct: 203 EKKSRVHHFQLP 214
>gi|444721129|gb|ELW61882.1| Negative elongation factor E [Tupaia chinensis]
Length = 432
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 34/169 (20%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI----- 196
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+
Sbjct: 264 PRKGNTLYVYGEDMTPALLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG 323
Query: 197 ----------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSL 234
T +CA FVT++ ES+D+A+ E+NGT V+ V+LKV++
Sbjct: 324 TQVESVQLKVNIARKQPMLDAATGNCA--FVTYEKMESADQAVAELNGTQVESVQLKVNI 381
Query: 235 ARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDDDIFGE 282
AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y DD++ E
Sbjct: 382 ARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKE 426
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIKAETKNS---GFKRSRTLEGKLKDPEKGPAPTFQPF 110
>gi|327266490|ref|XP_003218038.1| PREDICTED: negative elongation factor E-like [Anolis carolinensis]
Length = 359
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 86/140 (61%), Gaps = 26/140 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V GA +++ LR FS+FG I +SM+ + FVT
Sbjct: 245 PRKGNTVYVYGADMNQNMLRTAFSVFGNIIDLSMDNPRNCAFVT---------------- 288
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
++ ES+D+AITE+NG V+ ++LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 289 -----YEKMESADQAITELNGKVVEDIQLKVSIARKQ----PMLDAATGKSVWGSLAVRN 339
Query: 261 SLKGNHKDKRHQVIYDDDIF 280
S+KG+H+DKR QVIY++DIF
Sbjct: 340 SVKGSHRDKRSQVIYNEDIF 359
>gi|291229550|ref|XP_002734734.1| PREDICTED: RD RNA-binding protein-like [Saccoglossus kowalevskii]
Length = 282
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 39/224 (17%)
Query: 66 GFKRPRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPK-------FLKVSKRETND 118
GFKR R LE KL + ++ + + P S ++S P S+ F+ +
Sbjct: 88 GFKRSRNLEHKLKDPEKLSFQPFHPSSTPSGDESTPSPSRTSVKPLYESFVSTGTSGSGH 147
Query: 119 DRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVE 178
G R + + GNT++V G GI+E ++ F+ GKI +++ME +
Sbjct: 148 GSLSSRDTRQGSHFDDR----RERRKGNTVYVSGHGITESVCQKAFTTIGKIVNINMEQD 203
Query: 179 KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ GFVT F+ E +DKAI E+NGT V+GV LKVS+ARRQ
Sbjct: 204 RNCGFVT---------------------FEKMEMADKAIEEINGTLVEGVHLKVSMARRQ 242
Query: 239 LKVAPINDAASSTT-WSAIACHQSLKGNHKDKRHQVIYD-DDIF 280
P+ ++A+ + WS++A S K HKD+R V+YD DD+F
Sbjct: 243 ----PMLESATDNSPWSSVAAGIS-KNAHKDRRQMVVYDADDLF 281
>gi|395533839|ref|XP_003768960.1| PREDICTED: negative elongation factor E [Sarcophilus harrisii]
Length = 386
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR+ FS FG I +SM+ + FV
Sbjct: 264 PRKGNTLYVSGTDMTPTLLREAFSPFGNIIDLSMDPPRNCAFV----------------- 306
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQ 260
T++ ES+D+AI E+NGT V+ V+LKVS+AR+Q P+ DAA+ ++ W ++A
Sbjct: 307 ----TYEKMESADQAIAELNGTKVESVQLKVSIARKQ----PMLDAATGNSVWGSLAVQS 358
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y+DD++ E
Sbjct: 359 SPKGCHRDKRTQIVYNDDVYKE 380
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIKAETKNS---GFKRSRTLEGKLKDPEKGLAPTFQPF 110
>gi|198413035|ref|XP_002128038.1| PREDICTED: similar to Negative elongation factor E (NELF-E)
(RNA-binding protein RD) [Ciona intestinalis]
Length = 308
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 44/261 (16%)
Query: 32 RPIEAKDA---REVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLT-ETDRSTVSA 87
+PI++ +A E A++LLKSGAI+ V+ K+ FKR L+RKLT ETD++ S
Sbjct: 80 KPIKSFNAAANTEAAKQLLKSGAIH--VKAEKKT---AFKRSSNLKRKLTTETDQTKRST 134
Query: 88 YQPFSAIQPEDSEPVDSKP-KFLKVSKRETNDDRTPVDKKVY-GESLLTRLAPNEK---- 141
+Q FS DS D++ K+SK +T D+ P+ + + TR EK
Sbjct: 135 FQSFST--GSDSTGTDNEEIAESKISKLDT-DNAQPISEHYKPKKEQRTRAPRREKKTEK 191
Query: 142 --PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDD 199
P+ GNT++V G +SE+ + Q+FS FG I V+ME EK FV++D
Sbjct: 192 KAPRKGNTLYVHGYVVSEKMIEQYFSKFGNIIKVNMEREKNSAFVSYD------------ 239
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
TF E+++ AI+E++ + V ++KVSLAR Q +A + T W +A
Sbjct: 240 ------TF---EAAEHAISELDDSLVDDCRVKVSLARHQPLLASV---TQETPWGGLAER 287
Query: 260 QSLKGNHKDKRHQVIYDDDIF 280
+ D R V Y DD+F
Sbjct: 288 GDKGASIPDSRTLVTYGDDLF 308
>gi|126309585|ref|XP_001368988.1| PREDICTED: hypothetical protein LOC100023768 isoform 1 [Monodelphis
domestica]
Length = 400
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 278 PRKGNTLYVSGTDMTPTLLRGAFSPFGNIIDISMDPPRNCAFV----------------- 320
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQ 260
T++ ES+D+AI E+NGT V+ V+LKVS+AR+Q P+ DAA+ ++ W ++A
Sbjct: 321 ----TYEKMESADQAIAELNGTKVESVQLKVSIARKQ----PMLDAATGNSVWGSLAVQS 372
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y+DD++ E
Sbjct: 373 SPKGCHRDKRTQIVYNDDVYKE 394
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPAPTFQPF 110
>gi|390341611|ref|XP_789598.2| PREDICTED: negative elongation factor E-like [Strongylocentrotus
purpuratus]
Length = 276
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 134/272 (49%), Gaps = 55/272 (20%)
Query: 19 PEPERTQASSTLKRPIEA--KDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+P+ T KRP E +DARE+A+K+L A + P+ E+ GFKR R LER+
Sbjct: 44 PQPKAT------KRPAETSQEDARELAKKVL--AAQHSKSNKPENKEK-GFKRSRNLERQ 94
Query: 77 LTETDR--STVSAYQPFSAIQPEDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLT 134
+ D+ S +Y+PF D K +++ ++ K +Y + +
Sbjct: 95 RNQ-DKPVSAAPSYKPFD----------DHKSGLRGANEQSSSPSVDSSKKSLYDSFVSS 143
Query: 135 RLAPNEK--------PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTF 186
+EK K G+TIFV ISE+ +Q FS FG + +VS+EVE+ R F+TF
Sbjct: 144 GTLEDEKRGFNQEGGKKQGHTIFVTSPEISEDLCKQAFSRFGTMANVSLEVERKRAFITF 203
Query: 187 DSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPIND 246
D E +DKAI E+NGT V G+ ++V++ARRQ + + +
Sbjct: 204 ---------------------DKMEDADKAIEEMNGTMVNGMTVRVAMARRQPSLEAVQN 242
Query: 247 AASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 278
+S W+ IA + K KD R V+YD+D
Sbjct: 243 NTNS-PWTKIAGGIT-KTRPKDSREVVVYDND 272
>gi|148724908|emb|CAN87696.1| RD RNA binding protein [Sus scrofa]
Length = 373
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 251 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 293
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 294 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 345
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 346 SPKGCHRDKRTQIVYSDDVYKE 367
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|149732070|ref|XP_001492762.1| PREDICTED: negative elongation factor E-like [Equus caballus]
Length = 382
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 260 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 302
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 303 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 354
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 355 SPKGCHRDKRTQIVYSDDVYKE 376
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|426250507|ref|XP_004018977.1| PREDICTED: negative elongation factor E isoform 2 [Ovis aries]
Length = 340
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 218 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 260
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 261 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 312
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 313 SPKGCHRDKRTQIVYSDDVYKE 334
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|431921549|gb|ELK18903.1| Negative elongation factor E [Pteropus alecto]
Length = 374
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 252 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 294
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 295 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 346
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 347 SPKGCHRDKRTQIVYSDDVYKE 368
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|426250505|ref|XP_004018976.1| PREDICTED: negative elongation factor E isoform 1 [Ovis aries]
Length = 370
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 248 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 290
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 291 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 342
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 343 SPKGCHRDKRTQIVYSDDVYKE 364
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|156120154|ref|NP_001095295.1| negative elongation factor E [Sus scrofa]
gi|148724907|emb|CAN87695.1| RD RNA binding protein [Sus scrofa]
Length = 378
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 256 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 298
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 299 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 350
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 351 SPKGCHRDKRTQIVYSDDVYKE 372
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|432089455|gb|ELK23397.1| Negative elongation factor E [Myotis davidii]
Length = 440
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 318 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 360
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 361 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 412
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y+DD++ E
Sbjct: 413 SPKGCHRDKRTQIVYNDDVYKE 434
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ +QPF
Sbjct: 99 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPAPTFQPF 153
>gi|440907636|gb|ELR57757.1| Negative elongation factor E, partial [Bos grunniens mutus]
Length = 373
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 251 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 293
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 294 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 345
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 346 SPKGCHRDKRTQIVYSDDVYKE 367
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 59 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 113
>gi|115495421|ref|NP_001069672.1| negative elongation factor E [Bos taurus]
gi|122146333|sp|Q0V898.1|NELFE_BOVIN RecName: Full=Negative elongation factor E; Short=NELF-E; AltName:
Full=RNA-binding protein RD
gi|110665662|gb|ABG81477.1| RD RNA-binding protein [Bos taurus]
gi|111304919|gb|AAI20073.1| RD RNA binding protein [Bos taurus]
gi|296474276|tpg|DAA16391.1| TPA: negative elongation factor E [Bos taurus]
Length = 374
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 252 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 294
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 295 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 346
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 347 SPKGCHRDKRTQIVYSDDVYKE 368
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|345778400|ref|XP_003431725.1| PREDICTED: negative elongation factor E isoform 1 [Canis lupus
familiaris]
Length = 344
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 222 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 264
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 265 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 316
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 317 SPKGCHRDKRTQIVYSDDVYKE 338
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|50539818|ref|NP_001002375.1| negative elongation factor E [Danio rerio]
gi|49903853|gb|AAH76037.1| RD RNA binding protein [Danio rerio]
Length = 346
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 26/137 (18%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNT++V G G+ E+ LR F+ G I +SM DSP +CA F
Sbjct: 235 GNTVYVYGTGLVEDSLRTAFAQHGNIIDLSM-----------DSPR--------NCA--F 273
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLK 263
VTF+ ES+D+A+ E+NGT V V +KVS+AR+Q P+ DAA+ + W+++A S K
Sbjct: 274 VTFEKIESADQAVAELNGTTVGDVNIKVSIARKQ----PMLDAATGKSVWASLAVQNSAK 329
Query: 264 GNHKDKRHQVIYDDDIF 280
G+++DKR QV+Y +D
Sbjct: 330 GSYRDKRSQVVYSEDFL 346
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSA 93
++ A E A+ L+KSGAI+ I K GFKR R LE KL + ++ A+ PF
Sbjct: 56 VDTATATEQAKMLVKSGAISAIKSENKNS---GFKRSRMLEGKLKDPEKGPAPAFLPFQR 112
Query: 94 IQPEDSEPVDSKPKFLKVSKRET 116
D EP DS + + S E+
Sbjct: 113 SVSTDEEPPDSAKRIHRKSLYES 135
>gi|94733401|emb|CAK04563.1| novel protein (zgc:92496) [Danio rerio]
Length = 346
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 26/137 (18%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNT++V G G+ E+ LR F+ G I +SM DSP +CA F
Sbjct: 235 GNTVYVYGTGLVEDSLRTAFAQHGNIIDLSM-----------DSPR--------NCA--F 273
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLK 263
VTF+ ES+D+A+ E+NGT V V +KVS+AR+Q P+ DAA+ + W+++A S K
Sbjct: 274 VTFEKIESADQAVAELNGTTVGDVNIKVSIARKQ----PMLDAATGKSVWASLAVQNSAK 329
Query: 264 GNHKDKRHQVIYDDDIF 280
G+++DKR QV+Y +D
Sbjct: 330 GSYRDKRSQVVYSEDFL 346
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSA 93
++ A E A+ L+KSGAI+ I K GFKR R LE KL + ++ A+ PF
Sbjct: 56 VDTATATEQAKMLIKSGAISAIKSENKNS---GFKRSRMLEGKLKDPEKGPAPAFLPFQR 112
Query: 94 IQPEDSEPVDSKPKFLKVSKRET 116
D EP DS + + S E+
Sbjct: 113 SVSTDEEPPDSAKRIHRKSLYES 135
>gi|410958800|ref|XP_003986002.1| PREDICTED: negative elongation factor E isoform 1 [Felis catus]
gi|410958802|ref|XP_003986003.1| PREDICTED: negative elongation factor E isoform 2 [Felis catus]
Length = 380
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 258 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 300
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 301 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 352
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 353 SPKGCHRDKRTQIVYSDDVYKE 374
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|281345622|gb|EFB21206.1| hypothetical protein PANDA_019914 [Ailuropoda melanoleuca]
Length = 358
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 236 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 278
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 279 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 330
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 331 SPKGCHRDKRTQIVYSDDVYKE 352
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 32 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 86
>gi|57094373|ref|XP_532087.1| PREDICTED: negative elongation factor E isoform 2 [Canis lupus
familiaris]
Length = 374
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 252 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 294
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 295 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 346
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 347 SPKGCHRDKRTQIVYSDDVYKE 368
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|301788520|ref|XP_002929676.1| PREDICTED: negative elongation factor E-like [Ailuropoda
melanoleuca]
Length = 382
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 260 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 302
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 303 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 354
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 355 SPKGCHRDKRTQIVYSDDVYKE 376
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|410958804|ref|XP_003986004.1| PREDICTED: negative elongation factor E isoform 3 [Felis catus]
Length = 350
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 228 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 270
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 271 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 322
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 323 SPKGCHRDKRTQIVYSDDVYKE 344
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|37362276|gb|AAQ91266.1| class III histocompatibility antigen RD [Danio rerio]
Length = 346
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 26/137 (18%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNT++V G G+ E+ LR F+ G I +SM DSP +CA F
Sbjct: 235 GNTVYVYGTGLVEDSLRTAFAQHGNIIDLSM-----------DSPR--------NCA--F 273
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLK 263
VTF+ ES+D+A+ E+NGT V V +KVS+AR+Q P+ DAA+ + W+++A S K
Sbjct: 274 VTFEKIESADQAVAELNGTTVGDVNIKVSIARKQ----PMLDAATGKSVWASLAVQNSAK 329
Query: 264 GNHKDKRHQVIYDDDIF 280
G+++DKR QV+Y +D
Sbjct: 330 GSYRDKRSQVVYSEDFL 346
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSA 93
++ A E A+ L+KSGAI+ I K GFKR R LE KL + ++ A+ PF
Sbjct: 56 VDTATATEQAKMLIKSGAISAIKSENKNS---GFKRSRTLEGKLKDPEKGPAPAFLPFQR 112
Query: 94 IQPEDSEPVDSKPKFLKVSKRET 116
D EP DS + + S E+
Sbjct: 113 SVSTDEEPPDSAKRIHRKSLYES 135
>gi|291395819|ref|XP_002714359.1| PREDICTED: RD RNA-binding protein [Oryctolagus cuniculus]
Length = 388
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 266 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 308
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 309 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 360
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y+DD++ E
Sbjct: 361 SPKGCHRDKRTQIVYNDDVYKE 382
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|397523113|ref|XP_003831586.1| PREDICTED: negative elongation factor E isoform 3 [Pan paniscus]
Length = 352
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 230 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 272
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 273 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 324
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 325 SPKGCHRDKRTQIVYSDDVYKE 346
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|397523111|ref|XP_003831585.1| PREDICTED: negative elongation factor E isoform 2 [Pan paniscus]
Length = 389
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 267 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 309
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 310 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 361
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 362 SPKGCHRDKRTQIVYSDDVYKE 383
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 63 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 117
>gi|397523109|ref|XP_003831584.1| PREDICTED: negative elongation factor E isoform 1 [Pan paniscus]
Length = 382
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 260 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 302
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 303 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 354
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 355 SPKGCHRDKRTQIVYSDDVYKE 376
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|119623957|gb|EAX03552.1| RD RNA binding protein, isoform CRA_b [Homo sapiens]
Length = 336
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 214 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 256
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 257 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 308
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 309 SPKGCHRDKRTQIVYSDDVYKE 330
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 MDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|148236769|ref|NP_001089853.1| negative elongation factor complex member E [Xenopus laevis]
gi|80478518|gb|AAI08547.1| MGC131007 protein [Xenopus laevis]
Length = 335
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 26/140 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G G+S+ LR+ FS FG I +SM+ + FVT
Sbjct: 221 PRKGNTVYVHGVGMSQTVLREAFSSFGIIIDLSMDAPRNCAFVT---------------- 264
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
++ ES+D+AI E+N ++ + +KVS+AR+Q P+ +AA+ + W ++A
Sbjct: 265 -----YEKMESADQAIAELNNKLIEDIPVKVSIARKQ----PMLEAATGKSVWGSLAVQN 315
Query: 261 SLKGNHKDKRHQVIYDDDIF 280
S+KG+H+DKR QV Y +DIF
Sbjct: 316 SVKGSHRDKRSQVNYSEDIF 335
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
I+ A E A+ L+K+GAI+ I K GFKR R LE KL + ++ ++QPF
Sbjct: 56 IDTATATEQAKMLVKTGAISAIKSGTKNS---GFKRSRTLECKLKDPEKGPAPSFQPF 110
>gi|332823610|ref|XP_003311227.1| PREDICTED: negative elongation factor E isoform 1 [Pan troglodytes]
Length = 389
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 267 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 309
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 310 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 361
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 362 SPKGCHRDKRTQIVYSDDVYKE 383
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 63 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 117
>gi|194380248|dbj|BAG63891.1| unnamed protein product [Homo sapiens]
Length = 387
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 265 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 307
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 308 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 359
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 360 SPKGCHRDKRTQIVYSDDVYKE 381
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 63 MDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 117
>gi|402866535|ref|XP_003897435.1| PREDICTED: negative elongation factor E [Papio anubis]
Length = 393
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 271 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 313
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 314 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 365
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 366 SPKGCHRDKRTQIVYSDDVYKE 387
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 63 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 117
>gi|297290488|ref|XP_002803722.1| PREDICTED: negative elongation factor E [Macaca mulatta]
Length = 387
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 265 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 307
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 308 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 359
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 360 SPKGCHRDKRTQIVYSDDVYKE 381
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 63 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 117
>gi|332823612|ref|XP_003311228.1| PREDICTED: negative elongation factor E isoform 2 [Pan troglodytes]
Length = 352
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 230 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 272
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 273 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 324
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 325 SPKGCHRDKRTQIVYSDDVYKE 346
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|426352525|ref|XP_004043762.1| PREDICTED: negative elongation factor E isoform 2 [Gorilla gorilla
gorilla]
Length = 385
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 263 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 305
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 306 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 357
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 358 SPKGCHRDKRTQIVYSDDVYKE 379
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 63 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 117
>gi|194374161|dbj|BAG62393.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 228 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 270
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 271 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 322
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 323 SPKGCHRDKRTQIVYSDDVYKE 344
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 MDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|395832057|ref|XP_003789094.1| PREDICTED: negative elongation factor E isoform 1 [Otolemur
garnettii]
gi|395832059|ref|XP_003789095.1| PREDICTED: negative elongation factor E isoform 2 [Otolemur
garnettii]
Length = 380
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 258 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 300
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 301 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 352
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 353 SPKGCHRDKRTQIVYSDDVYKE 374
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIKAETKNS---GFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|332823608|ref|XP_527349.3| PREDICTED: negative elongation factor E isoform 3 [Pan troglodytes]
gi|410211804|gb|JAA03121.1| RD RNA binding protein [Pan troglodytes]
gi|410249090|gb|JAA12512.1| RD RNA binding protein [Pan troglodytes]
gi|410296512|gb|JAA26856.1| RD RNA binding protein [Pan troglodytes]
gi|410358721|gb|JAA44628.1| RD RNA binding protein [Pan troglodytes]
Length = 382
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 260 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 302
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 303 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 354
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 355 SPKGCHRDKRTQIVYSDDVYKE 376
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|296197762|ref|XP_002746415.1| PREDICTED: negative elongation factor E [Callithrix jacchus]
Length = 386
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 264 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 306
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 307 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 358
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 359 SPKGCHRDKRTQIVYSDDVYKE 380
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|410358719|gb|JAA44627.1| RD RNA binding protein [Pan troglodytes]
Length = 377
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 255 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 297
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 298 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 349
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 350 SPKGCHRDKRTQIVYSDDVYKE 371
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIK---AETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|426352527|ref|XP_004043763.1| PREDICTED: negative elongation factor E isoform 3 [Gorilla gorilla
gorilla]
Length = 348
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 226 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 268
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 269 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 320
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 321 SPKGCHRDKRTQIVYSDDVYKE 342
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|297290491|ref|XP_001113834.2| PREDICTED: negative elongation factor E isoform 2 [Macaca mulatta]
Length = 350
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 228 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 270
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 271 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 322
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 323 SPKGCHRDKRTQIVYSDDVYKE 344
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|426352523|ref|XP_004043761.1| PREDICTED: negative elongation factor E isoform 1 [Gorilla gorilla
gorilla]
Length = 378
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 256 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 298
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 299 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 350
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 351 SPKGCHRDKRTQIVYSDDVYKE 372
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|355561556|gb|EHH18188.1| hypothetical protein EGK_14739 [Macaca mulatta]
gi|380816498|gb|AFE80123.1| negative elongation factor E [Macaca mulatta]
gi|383421563|gb|AFH33995.1| negative elongation factor E [Macaca mulatta]
gi|384949418|gb|AFI38314.1| negative elongation factor E [Macaca mulatta]
Length = 382
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 260 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 302
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 303 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 354
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 355 SPKGCHRDKRTQIVYSDDVYKE 376
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|109070546|ref|XP_001113911.1| PREDICTED: negative elongation factor E isoform 4 [Macaca mulatta]
Length = 380
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 258 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 300
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 301 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 352
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 353 SPKGCHRDKRTQIVYSDDVYKE 374
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|14670268|ref|NP_002895.3| negative elongation factor E [Homo sapiens]
gi|1350554|sp|P18615.3|NELFE_HUMAN RecName: Full=Negative elongation factor E; Short=NELF-E; AltName:
Full=RNA-binding protein RD
gi|190974|gb|AAC37523.1| RD protein [Homo sapiens]
gi|2347135|gb|AAB67979.1| RD [Homo sapiens]
gi|19263637|gb|AAH25235.1| RD RNA binding protein [Homo sapiens]
gi|29791860|gb|AAH50617.1| RD RNA binding protein [Homo sapiens]
gi|119623958|gb|EAX03553.1| RD RNA binding protein, isoform CRA_c [Homo sapiens]
gi|124000675|gb|ABM87846.1| RD RNA binding protein [synthetic construct]
Length = 380
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 258 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 300
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 301 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 352
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 353 SPKGCHRDKRTQIVYSDDVYKE 374
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 MDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|383615295|gb|AFH41798.1| negative elongation factor E [Homo sapiens]
Length = 380
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 258 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 300
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 301 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 352
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 353 SPKGCHRDKRTQIVYSDDVYKE 374
>gi|297677761|ref|XP_002816723.1| PREDICTED: negative elongation factor E isoform 3 [Pongo abelii]
Length = 389
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 267 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 309
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 310 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 361
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 362 SPKGCHRDKRTQIVYSDDVYKE 383
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 63 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 117
>gi|297677759|ref|XP_002816722.1| PREDICTED: negative elongation factor E isoform 2 [Pongo abelii]
Length = 352
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 230 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 272
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 273 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 324
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 325 SPKGCHRDKRTQIVYSDDVYKE 346
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIKAETKNS---GFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|351713164|gb|EHB16083.1| Negative elongation factor E [Heterocephalus glaber]
Length = 342
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR F+ FG I +SM+ + FV
Sbjct: 220 PRKGNTLYVYGEDMTPTLLRGAFAPFGNIIDLSMDPPRNCAFV----------------- 262
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 263 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 314
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 315 SPKGCHRDKRTQIVYSDDVYKE 336
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPAPTFQPF 110
>gi|297677757|ref|XP_002816721.1| PREDICTED: negative elongation factor E isoform 1 [Pongo abelii]
Length = 382
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 260 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 302
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 303 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 354
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 355 SPKGCHRDKRTQIVYSDDVYKE 376
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|355762474|gb|EHH61972.1| hypothetical protein EGM_20126 [Macaca fascicularis]
Length = 382
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 260 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 302
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 303 ----TYEKMESADQAVAELNGTQVESVQLKVNIARQQ----PMLDAATGKSVWGSLAVQN 354
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 355 SPKGCHRDKRTQIVYSDDVYKE 376
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|344307276|ref|XP_003422308.1| PREDICTED: negative elongation factor E-like [Loxodonta africana]
Length = 380
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 258 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 300
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 301 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 352
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 353 SPKGCHRDKRTQIVYSDDVYKE 374
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIKAETKNS---GFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|348576450|ref|XP_003474000.1| PREDICTED: negative elongation factor E-like [Cavia porcellus]
Length = 382
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR F+ FG I +SM+ + FV
Sbjct: 260 PRKGNTLYVYGEDMTPTLLRGAFAPFGNIIDLSMDPPRNCAFV----------------- 302
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 303 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 354
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 355 SPKGCHRDKRTQIVYSDDVYKE 376
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPAPTFQPF 110
>gi|35913|emb|CAA34231.1| unnamed protein product [Homo sapiens]
Length = 325
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 203 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 245
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 246 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 297
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 298 SPKGCHRDKRTQIVYSDDVYKE 319
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 1 MDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 55
>gi|348519377|ref|XP_003447207.1| PREDICTED: hypothetical protein LOC100705150 [Oreochromis
niloticus]
Length = 356
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 26/137 (18%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNT++V G+G+ E+ LR FS G I +SM+ + F+T
Sbjct: 243 GNTVYVYGSGLGEDSLRSAFSQHGNIIDLSMDNPRNCAFIT------------------- 283
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLK 263
F+ ES+D+A+ E+NGT V V +KVS+AR+Q P+ DAA+ + W+++A S K
Sbjct: 284 --FEKMESADQAVAELNGTTVGDVHIKVSIARKQ----PMLDAATGKSVWASLAVQNSTK 337
Query: 264 GNHKDKRHQVIYDDDIF 280
G+++DKR+QV+Y +D+F
Sbjct: 338 GSYRDKRNQVVYSEDLF 354
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A+ L+KSGAI+ I K GFKR R LE KL + ++ V A+ PF
Sbjct: 56 VDTATATEQAKMLIKSGAISAIKSENKNS---GFKRSRMLEIKLKDPEKGPVPAFLPF 110
>gi|410925192|ref|XP_003976065.1| PREDICTED: negative elongation factor E-like [Takifugu rubripes]
Length = 343
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 83/137 (60%), Gaps = 26/137 (18%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNT++V G+G++E+ LR FS G I +SM+ + F+T
Sbjct: 232 GNTVYVYGSGLTEDSLRSAFSQHGNIIDLSMDNPRNCAFIT------------------- 272
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLK 263
F+ ES+D+A+ E+NG+ V + +KVS+AR+Q P+ DAA+ + W+++A S K
Sbjct: 273 --FEKMESADQAVAELNGSTVGDIYIKVSIARKQ----PMLDAATGKSVWASLAVQNSTK 326
Query: 264 GNHKDKRHQVIYDDDIF 280
G+++DKR+QV+Y++D+F
Sbjct: 327 GSYRDKRNQVVYNEDLF 343
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSA 93
++ A E A+ L+KSGAI+ I K GFKR R LE KL + ++ V A+ PF
Sbjct: 56 VDTAMATEQAKMLIKSGAISAIKSENKNS---GFKRSRMLEIKLKDPEKGPVPAFLPFQR 112
Query: 94 IQPEDSEPVDSK 105
D EP +K
Sbjct: 113 SVSADDEPESAK 124
>gi|441594538|ref|XP_003271972.2| PREDICTED: negative elongation factor E [Nomascus leucogenys]
Length = 331
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 209 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 251
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 252 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 303
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 304 SPKGCHRDKRTQIVYSDDVYKE 325
>gi|47190437|emb|CAG14780.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 26/136 (19%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNT++V G+G++E+ LR FS G I +SM D+P +CA F
Sbjct: 17 GNTVYVYGSGLTEDTLRSAFSQHGNIIDLSM-----------DNPR--------NCA--F 55
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLK 263
+TF+ ES+D+A+ E+NG+ V V +KVS+AR+Q P+ DAA+ + W+++A S K
Sbjct: 56 ITFERMESADQAVAELNGSTVGDVYIKVSIARKQ----PMLDAATGKSVWASLAVQNSTK 111
Query: 264 GNHKDKRHQVIYDDDI 279
G+++DKR+QV+Y +D
Sbjct: 112 GSYRDKRNQVVYSEDF 127
>gi|148694799|gb|EDL26746.1| RD RNA-binding protein, isoform CRA_b [Mus musculus]
Length = 313
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 26/139 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 200 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 242
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 243 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 294
Query: 261 SLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 295 SPKGCHRDKRTQIVYSDDL 313
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|387017252|gb|AFJ50744.1| Negative elongation factor E [Crotalus adamanteus]
Length = 338
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 26/140 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V GA ++E L FS FGKI +S++ + FVT
Sbjct: 224 PRKGNTVYVYGANMNEAMLTTAFSAFGKIIDLSVDSVRNCAFVT---------------- 267
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAA-SSTTWSAIACHQ 260
+D ES+D+AI ++NGT V+ VKL VS+AR+Q P+ D A ++ W +A
Sbjct: 268 -----YDKIESADQAIAQLNGTVVEDVKLTVSIARKQ----PMLDVAIGNSVWGTLAVIN 318
Query: 261 SLKGNHKDKRHQVIYDDDIF 280
++ G+H+DKR QVIY +D F
Sbjct: 319 TINGSHQDKRSQVIYKEDNF 338
>gi|146332117|gb|ABQ22564.1| negative elongation factor E-like protein [Callithrix jacchus]
Length = 218
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 96 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 138
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 139 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 190
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 191 SPKGCHRDKRTQIVYSDDVYKE 212
>gi|47087107|ref|NP_997713.1| RD RNA-binding protein [Rattus norvegicus]
gi|259906426|ref|NP_001159373.1| RD RNA-binding protein [Rattus norvegicus]
gi|46237593|emb|CAE83971.1| RD RNA-binding protein [Rattus norvegicus]
gi|50927106|gb|AAH79427.1| Rdbp protein [Rattus norvegicus]
gi|149027988|gb|EDL83439.1| rCG38266, isoform CRA_a [Rattus norvegicus]
gi|149027990|gb|EDL83441.1| rCG38266, isoform CRA_a [Rattus norvegicus]
gi|149027993|gb|EDL83444.1| rCG38266, isoform CRA_a [Rattus norvegicus]
Length = 369
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 26/139 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 256 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 298
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 299 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 350
Query: 261 SLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 351 SPKGCHRDKRTQIVYSDDL 369
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIKAETKNS---GFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|38372876|sp|P19426.2|NELFE_MOUSE RecName: Full=Negative elongation factor E; Short=NELF-E; AltName:
Full=RNA-binding protein RD
Length = 375
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 26/139 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 262 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 304
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 305 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 356
Query: 261 SLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 357 SPKGCHRDKRTQIVYSDDL 375
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIK---AETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|114052226|ref|NP_613046.2| negative elongation factor E [Mus musculus]
gi|114052228|ref|NP_001039328.1| negative elongation factor E [Mus musculus]
gi|114052414|ref|NP_001039329.1| negative elongation factor E [Mus musculus]
gi|12849099|dbj|BAB28206.1| unnamed protein product [Mus musculus]
gi|22028165|gb|AAH34867.1| RD RNA-binding protein [Mus musculus]
gi|74150941|dbj|BAE27605.1| unnamed protein product [Mus musculus]
gi|74203476|dbj|BAE20893.1| unnamed protein product [Mus musculus]
Length = 367
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 26/139 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 254 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 296
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 297 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 348
Query: 261 SLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 349 SPKGCHRDKRTQIVYSDDL 367
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIK---AETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|148694798|gb|EDL26745.1| RD RNA-binding protein, isoform CRA_a [Mus musculus]
gi|148694800|gb|EDL26747.1| RD RNA-binding protein, isoform CRA_c [Mus musculus]
gi|148694802|gb|EDL26749.1| RD RNA-binding protein, isoform CRA_a [Mus musculus]
gi|148694804|gb|EDL26751.1| RD RNA-binding protein, isoform CRA_a [Mus musculus]
Length = 367
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 26/139 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 254 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 296
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 297 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 348
Query: 261 SLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 349 SPKGCHRDKRTQIVYSDDL 367
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIK---AETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|199608|gb|AAA39680.1| 42 kd polypeptide (RD), (first expressed exon) [Mus musculus]
Length = 375
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 26/139 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 262 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 304
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 305 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 356
Query: 261 SLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 357 SPKGCHRDKRTQIVYSDDL 375
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIKAETKNS---GFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|3986765|gb|AAC84161.1| RD [Mus musculus]
Length = 342
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 26/139 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 229 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 271
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 272 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 323
Query: 261 SLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 324 SPKGCHRDKRTQIVYSDDL 342
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 31 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 85
>gi|354492829|ref|XP_003508547.1| PREDICTED: negative elongation factor E-like [Cricetulus griseus]
Length = 376
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 26/139 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 263 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 305
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 306 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 357
Query: 261 SLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 358 SPKGCHRDKRTQIVYSDDL 376
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ +QPF
Sbjct: 55 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPAPTFQPF 109
>gi|241626258|ref|XP_002409635.1| negative elongation factor E, putative [Ixodes scapularis]
gi|215503205|gb|EEC12699.1| negative elongation factor E, putative [Ixodes scapularis]
Length = 211
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 102/187 (54%), Gaps = 23/187 (12%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPIEAK-DAREVARKLLKSGAINPIVRPPKRCEQEGFK 68
++Q + P+ EP + QA TL++ E+K DA+EVA+KLLKSGAI+ I K E+ FK
Sbjct: 30 AMQQIRTPKQEPPQVQA--TLRKVSESKPDAKEVAKKLLKSGAISAIKVETK--ERHSFK 85
Query: 69 RPRGLERKLTETDRSTVSAYQPFSAIQPEDSEP---VDSKPKFL-------------KVS 112
R + ERK + DR YQP++A P + E V +F+ + +
Sbjct: 86 RSKASERKRSLNDRPGGIGYQPYAANHPTEEESEATVSHSARFVYGLHRRSRTFSLWEWN 145
Query: 113 KRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICS 172
+R N D D K + P E+P+ GNT++V G G++E+ LR FS FG I S
Sbjct: 146 RRGGNLDED--DPKHFDRDPEKEGPPPERPRQGNTLYVHGVGLAEDLLRSAFSPFGPILS 203
Query: 173 VSMEVEK 179
+SMEV+K
Sbjct: 204 ISMEVDK 210
>gi|386949|gb|AAA36308.1| MHC HLA-RD protein, partial [Homo sapiens]
Length = 382
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 27/143 (18%)
Query: 142 PKGGNTIF-VQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
P+ GNT++ V G ++ LR FS FG I +SM D P +C
Sbjct: 259 PRKGNTLYDVYGEDMTPTLLRGAFSPFGNIIDLSM-----------DPPR--------NC 299
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACH 259
A FVT++ ES+D+A E+NGT V+ V+LK ++AR+Q P+ DAA+ + W A+A
Sbjct: 300 A--FVTYEKMESADQAAAELNGTQVESVQLKDNIARKQ----PMLDAATGKSVWGALAVQ 353
Query: 260 QSLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 354 NSPKGCHRDKRTQIVYSDDVYKE 376
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ V +QPF
Sbjct: 56 MDTATATEQAKQLVKSGAISAIKAETKNS---GFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|148225378|ref|NP_001091150.1| uncharacterized protein LOC100036904 [Xenopus laevis]
gi|120537990|gb|AAI29627.1| LOC100036904 protein [Xenopus laevis]
Length = 335
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 26/140 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G G+S+ L + FS FG I +S++ + FVT++ ES+D+AI
Sbjct: 221 PRKGNTVYVHGVGMSQTMLHEAFSSFGNIIDLSLDAPRNCAFVTYEKMESADQAIAG--- 277
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
+N ++ + +KVS+AR+Q P+ +AA+ + W ++A
Sbjct: 278 ------------------LNNKSIEDIPVKVSIARKQ----PMLEAATGKSVWGSLAVQN 315
Query: 261 SLKGNHKDKRHQVIYDDDIF 280
S+KG+H+DKR QV Y +DIF
Sbjct: 316 SVKGSHRDKRSQVNYSEDIF 335
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A+ L+K+GAI+ I K GFKR R LE KL + D+ ++QPF
Sbjct: 56 VDTATATEQAKMLVKTGAISAIKSGTKNS---GFKRSRTLEGKLKDPDKGPAPSFQPF 110
>gi|229366046|gb|ACQ58003.1| Negative elongation factor E [Anoplopoma fimbria]
Length = 376
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 26/137 (18%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNT++V G+G+ E+ LR FS G I +SM+ + F+T
Sbjct: 265 GNTVYVYGSGLGEDNLRSSFSQHGNIIDLSMDNPRNCAFIT------------------- 305
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLK 263
F+ ES+D+A+ E+NG V V +KVS+AR+Q P+ DAA+ + W+++A S K
Sbjct: 306 --FEKMESADQAVAELNGATVGDVHIKVSIARKQ----PMLDAATGKSVWASLAVQNSTK 359
Query: 264 GNHKDKRHQVIYDDDIF 280
G+++DKR+QV+Y++D
Sbjct: 360 GSYRDKRNQVVYNEDFL 376
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A+ L+K+GAI+ I K GFKR R LE KL + ++ + A+ PF
Sbjct: 56 VDTATATEQAKMLIKTGAISAIKSENKNS---GFKRSRMLEIKLKDPEKGQIPAFLPF 110
>gi|226443400|ref|NP_001140115.1| Negative elongation factor E [Salmo salar]
gi|221222298|gb|ACM09810.1| Negative elongation factor E [Salmo salar]
Length = 356
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 26/137 (18%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNT++V G G+ E+ LR FS G I +SM+ ++ F+T
Sbjct: 245 GNTVYVYGTGLVEDSLRLAFSQHGTIIDLSMDSQRNCAFIT------------------- 285
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLK 263
F+ ES+D+A+ E+NG+ V V +KVS+AR+Q P+ +AA+ + W+ +A S K
Sbjct: 286 --FEKMESADQAVAELNGSTVGDVPIKVSIARKQ----PMLEAATGKSVWATLAVQNSAK 339
Query: 264 GNHKDKRHQVIYDDDIF 280
G+++DKR+QV+Y +D
Sbjct: 340 GSYRDKRNQVVYSEDFL 356
>gi|432881490|ref|XP_004073808.1| PREDICTED: uncharacterized protein LOC101175662 [Oryzias latipes]
Length = 353
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 26/137 (18%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNT++V G+G+ E+ LR FS G I +SM+ + F+T
Sbjct: 242 GNTVYVYGSGLVEDSLRSAFSQHGNIIDLSMDNPRNCAFIT------------------- 282
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLK 263
F+ ES+D+A+ E+N + V V +KVS+AR+Q P+ DAA+ + W+++A S K
Sbjct: 283 --FEKMESADQAVAELNSSVVGDVHIKVSIARKQ----PMLDAATGKSVWASLAVQNSTK 336
Query: 264 GNHKDKRHQVIYDDDIF 280
G+++DKR+QV+Y +D
Sbjct: 337 GSYRDKRNQVVYSEDFL 353
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFS- 92
I+ A E A+ L+KSGAI+ I K GFKR R LE KL + ++ A+ PF
Sbjct: 57 IDTATATEQAKMLIKSGAISAIKSENK---NSGFKRSRMLEIKLKDPEKGPAPAFLPFQR 113
Query: 93 AIQPEDSEP 101
++ +D +P
Sbjct: 114 SVSADDDQP 122
>gi|391326749|ref|XP_003737874.1| PREDICTED: negative elongation factor E-like [Metaseiulus
occidentalis]
Length = 264
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 115/244 (47%), Gaps = 47/244 (19%)
Query: 38 DAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSAIQPE 97
DA+E+ARKLLKSGAI PI P+ + FKR +G ERK ++ YQPF+
Sbjct: 67 DAKELARKLLKSGAIKPIKSEPQG--KTVFKRSKGAERKRNGSE----VGYQPFA----- 115
Query: 98 DSEP-VDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGIS 156
EP P K+ + +D + +K+ E+ T P P+ GNT+++ GI+
Sbjct: 116 --EPSAKGDPPASKLGALDQDDPKLHAEKEFNAENS-TSTTPV-APRRGNTVYMNAQGIT 171
Query: 157 EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
E +R+ S G I + +E K FVTF++ C E +DK
Sbjct: 172 EALVRKACSAQGNILHICVEENKSCAFVTFET-----------C----------EVADKV 210
Query: 217 ITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYD 276
I ++G V G+ K +LARRQ ++ P + SA + D R VIY+
Sbjct: 211 IQALDGNCVVGLTFKAALARRQPQL-PTSVVPPPPPQSA---------SKDDPRELVIYE 260
Query: 277 DDIF 280
+++F
Sbjct: 261 ENLF 264
>gi|389615029|dbj|BAM20512.1| negative elongation factor E, partial [Papilio polytes]
Length = 260
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 22/188 (11%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPR-GLER 75
P+ EPE+ KRP EA+DARE+ARKL+KSGAI I PP + + FKRPR G ER
Sbjct: 37 PKQEPEKPVLP---KRPTEARDAREIARKLIKSGAIQAIKSPPPQPQNATFKRPRAGRER 93
Query: 76 KLTETDRST--VSAYQPFSAIQ--PEDSEPVDSKPKFLK---VSKRETNDDRTPVDKKVY 128
KL+ + + V++YQPFSA Q P E + K+L V+ RE + T +
Sbjct: 94 KLSGSAGTAGGVASYQPFSASQEPPPPEEKPSPRVKYLYDSFVTAREKEEKAT---RNQG 150
Query: 129 GESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDS 188
GE+ PN + V GA I+EE +R+ + F V + EK +TF++
Sbjct: 151 GET------PNSNTAKCCMVQVTGANITEEVIRRRLTTFEPFTYVQEDDEK--VLLTFET 202
Query: 189 PESSDKAI 196
P+ + A+
Sbjct: 203 PDLATHAL 210
>gi|357602864|gb|EHJ63540.1| hypothetical protein KGM_00025 [Danaus plexippus]
Length = 264
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 102/186 (54%), Gaps = 24/186 (12%)
Query: 31 KRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPR-GLERKLTETDRST--VSA 87
KRP EA+DARE+ARKL+KSGAI I PP + + FKRPR G ERKL+ + + +++
Sbjct: 48 KRPTEARDAREIARKLIKSGAIQAIKSPPPQPQNATFKRPRAGRERKLSGSTGAAGGIAS 107
Query: 88 YQPFSAIQ--PEDSEPVDSKPKFLK---VSKRETNDDRTPVDKKVYGESLLTRLAPNEKP 142
YQPFSA Q P E ++ K+L V+ RE + + GES +
Sbjct: 108 YQPFSASQEPPPPEEKASARVKYLYDSFVTAREKEEKS--ARNQGPGESSNS-------- 157
Query: 143 KGGNTIFVQ--GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT--D 198
G T +Q G+ I+EE LR+ + F + + + E ++ + ++TF++ + + A + +
Sbjct: 158 -SGKTTSLQIVGSKITEELLRRRLASF-EPFTFTQEPDEEKVYLTFETTDMATHAHSALE 215
Query: 199 DCARGF 204
C G+
Sbjct: 216 GCEEGW 221
>gi|195998964|ref|XP_002109350.1| hypothetical protein TRIADDRAFT_53276 [Trichoplax adhaerens]
gi|190587474|gb|EDV27516.1| hypothetical protein TRIADDRAFT_53276 [Trichoplax adhaerens]
Length = 262
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 21/116 (18%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
GNTI+V G GISE L++ F+ FG+I S++ME EK F+TF
Sbjct: 132 GNTIYVTGRGISEMVLKKSFTEFGRILSINMEAEKNCAFITF------------------ 173
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQ 260
DS E++ +AI E++ T GV LKVS +R+Q V + A+ + W+ A Q
Sbjct: 174 ---DSYEATSRAINEMDNTTAGGVSLKVSYSRKQNFVYIPDKVATHSPWARAAAGQ 226
>gi|156361206|ref|XP_001625410.1| predicted protein [Nematostella vectensis]
gi|156212242|gb|EDO33310.1| predicted protein [Nematostella vectensis]
Length = 265
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 114/246 (46%), Gaps = 40/246 (16%)
Query: 37 KDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSAIQP 96
+DA+E+A+KL+ SG + + + P+ E FKR + RK + SA Q S+
Sbjct: 58 EDAKEIAKKLIASGEVK-LKKDPQHRE---FKRAKTECRKNRQESLDRPSASQRASS--- 110
Query: 97 EDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESL--LTRLAPNEKPKGGNTIFVQGAG 154
P ++ K ++ KR+ D P G S NE+ +G T+FV G G
Sbjct: 111 ----PTTAEEKRSQM-KRDLYDRFVPS----LGNSGPGARNFRSNERRRG-KTVFVSGIG 160
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++EE L++ F+ G + V+ E + +GFVTF D+ E++D
Sbjct: 161 LTEEILKEEFNHLGHVERVNFEKNRSQGFVTF---------------------DTWEAAD 199
Query: 215 KAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVI 274
KAI E+NG VQ V ++VS+ARRQ + ++ S + +D R +
Sbjct: 200 KAIDEMNGLKVQHVHIRVSMARRQPNMDEMHGQGGRQLTSRDGKGGPGPTSREDPRDLLT 259
Query: 275 YDDDIF 280
YDD F
Sbjct: 260 YDDIDF 265
>gi|443694906|gb|ELT95924.1| hypothetical protein CAPTEDRAFT_219286 [Capitella teleta]
Length = 372
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 124/288 (43%), Gaps = 68/288 (23%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSA 93
IE + +V K + G + I + +Q FKR ++ ET+++ V +QP+S
Sbjct: 110 IEDLEQLQVQFKSREFGLLKAIKLGVDKKDQHSFKR----TKRQKETEKAPV-GFQPYSP 164
Query: 94 IQPEDSEPVDSKPK-------------FLKVSKRETNDDRTPVDKKVYGES------LLT 134
+ + EP P+ F+ ++RE+ P +K+ ++ +
Sbjct: 165 VHTPEFEPEKPNPEGISRPRIKSLQESFISAARRESEGVGRPEYRKISLDAQRQWCDITC 224
Query: 135 RLAPNEK-----PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
+ P E+ PK G TI+V+G G++EE L F G I +VSME E+ GFVTF++
Sbjct: 225 YVGPYERRERRAPKKGKTIYVKGPGLNEEILHSAFGSIGNIVNVSMEAERNNGFVTFETM 284
Query: 190 ESSDKAI--TDDCARGFV-----------TFDSP----ESSDKAITEVNGTHVQGVKLKV 232
E++ AI +C G V +FD P S+ ++EV G+ +
Sbjct: 285 EAAADAIKQMHECKVGNVQLHVSMAFNQPSFDPPPPTISSTSGGVSEVWGSMF----FCL 340
Query: 233 SLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
A+ + K AP +D A + R V YD D+F
Sbjct: 341 FAAKSKSKKAPESDQAG------------------EGRDVVAYDVDMF 370
>gi|344239161|gb|EGV95264.1| Negative elongation factor E [Cricetulus griseus]
Length = 67
Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 51/70 (72%), Gaps = 5/70 (7%)
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDK 269
ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DK
Sbjct: 2 ESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDK 57
Query: 270 RHQVIYDDDI 279
R Q++Y DD+
Sbjct: 58 RTQIVYSDDL 67
>gi|114793577|pdb|2BZ2|A Chain A, Solution Structure Of Nelf E Rrm
gi|178847069|pdb|2JX2|A Chain A, Solution Conformation Of Rna-Bound Nelf-E Rrm
gi|113472813|gb|ABI35896.1| NELF E RRM [synthetic construct]
Length = 121
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 25/109 (22%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 36 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 78
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS 250
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+
Sbjct: 79 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATG 119
>gi|159163573|pdb|1X5P|A Chain A, Solution Structure Of Rrm Domain In Parp14
Length = 97
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 25/110 (22%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 12 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 54
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASST 251
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ D+ S+
Sbjct: 55 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDSGPSS 96
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 23/97 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 22 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 64
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
GFV F SPE + KA+TE+NG V L V+LA+R
Sbjct: 65 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 99
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 23/97 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 10 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 52
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
GFV F SPE + KA+TE+NG V L V+LA+R
Sbjct: 53 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 87
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPESSDKAITDDC---ARG 203
G + +E L+ F FG SV + + KG GFV+F+ E + K + + G
Sbjct: 153 GEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGRSKGFG 212
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
FV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 213 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 247
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI++E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGINDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 43 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 85
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 86 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 121
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 261 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 303
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 304 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 339
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 155 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 210
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 211 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 239
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 290 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 332
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 333 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 368
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 62 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGF----------------- 104
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 105 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 140
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 313 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 355
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 356 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 391
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 207 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 262
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 263 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 291
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 290 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 332
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 333 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 368
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 290 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 332
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 333 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 368
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 460 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 502
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 503 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 538
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 354 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 409
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 410 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 438
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 167 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 209
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 210 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 245
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 61 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 116
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 117 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 145
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 261 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 303
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 304 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 339
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 261 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 303
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 304 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 339
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 297 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 339
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 340 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 375
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 191 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 246
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 247 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 275
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 37/138 (26%)
Query: 105 KPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQ 162
K KF ++ + + +R P D+ V + KG N ++V+ GI +E LR+
Sbjct: 277 KHKFGQMKQDKHKIERVPQDRSV-------------RCKGVN-LYVKNLDDGIDDERLRK 322
Query: 163 HFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220
FS FG I S + +E GR GF GFV F SPE + KA+TE+
Sbjct: 323 EFSPFGTITSAKVTMEGGRSKGF-------------------GFVCFSSPEEATKAVTEM 363
Query: 221 NGTHVQGVKLKVSLARRQ 238
NG V L V+LA+R+
Sbjct: 364 NGKIVATKPLYVALAQRK 381
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 97 EDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG-- 154
E+ + K + L V + + +R +K Y ++ L +L G +FV+
Sbjct: 305 EELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKL----NKYNGINLFVKNLDDD 360
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I +E LRQ FSI+G I S + V+ K +GF GFV F SP+
Sbjct: 361 IDDERLRQEFSIYGTITSAKIMVDDNGKSKGF-------------------GFVCFSSPD 401
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KAITE+N V G L V+LA+R+
Sbjct: 402 EATKAITEMNQRMVSGKPLYVALAQRK 428
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 229 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 271
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 272 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 307
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 123 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 178
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 179 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 207
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 37/138 (26%)
Query: 105 KPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQ 162
K KF ++ + + +R P D+ V + KG N ++V+ GI +E LR+
Sbjct: 277 KHKFGQMKQDKHKIERVPQDRSV-------------RCKGVN-LYVKNLDDGIDDERLRK 322
Query: 163 HFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220
FS FG I S + +E GR GF GFV F SPE + KA+TE+
Sbjct: 323 EFSPFGTITSAKVTMEGGRSKGF-------------------GFVCFSSPEEATKAVTEM 363
Query: 221 NGTHVQGVKLKVSLARRQ 238
NG V L V+LA+R+
Sbjct: 364 NGKIVATKPLYVALAQRK 381
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 308 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 350
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 351 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 386
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 202 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 257
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 258 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 286
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 222 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 264
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 265 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 300
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 116 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 171
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 172 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 200
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 222 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 264
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 265 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 300
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 116 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 171
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 172 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 200
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 229 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 271
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 272 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 307
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 123 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 178
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 179 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 207
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKRVE 271
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 184 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 226
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 227 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 262
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 78 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 133
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 134 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 162
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 234 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 276
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 277 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 312
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 128 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 183
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 184 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 212
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 256 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 298
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 299 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 334
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 150 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 205
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 206 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 234
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 329 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 371
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 372 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 407
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 223 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 278
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 279 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 307
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 313 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 355
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 356 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 391
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 207 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 262
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 263 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 291
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 290 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 332
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 333 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 368
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 24/99 (24%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCA 201
++++ G + +E LR+ FS +G S+ + E K RGF
Sbjct: 192 NVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGF------------------ 233
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+F+ E + KA+ E+NG + G + V A+++++
Sbjct: 234 -GFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVE 271
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 339 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 381
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 382 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 417
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 233 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 288
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 289 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 317
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 24/99 (24%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCA 201
++++ G + +E LR+ FS +G S+ + E K RGF
Sbjct: 192 NVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGF------------------ 233
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+F+ E + KA+ E+NG + G + V A+++++
Sbjct: 234 -GFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVE 271
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
Length = 1099
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 23/104 (22%)
Query: 142 PKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDD 199
P+ T+FV G I+EE LR +F FG I +V + K F+ ++ S+++AI+
Sbjct: 187 PEEITTVFVGGLNNTITEEELRAYFGTFGNIVAVKIIPLKNIAFIQYEKKSSAEQAIS-- 244
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAP 243
E+NG+H+ G KL++S R QL V P
Sbjct: 245 -------------------ELNGSHLGGAKLRLSFGRTQLNVNP 269
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I EE LR+ FS FG I S + E GR GF GFV F SPE
Sbjct: 308 IDEEILRKEFSQFGTITSSKVMTENGRSKGF-------------------GFVCFSSPEE 348
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 349 ATKAVTEMNGRIVVSKPLYVALAQRK 374
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ G+ +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
+ EF + FG+ M+ EK + + P S + +TD+ + GFV+F+ E
Sbjct: 187 AREFTNVYIKNFGE----DMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+NG + G ++ V A+++
Sbjct: 243 DAQKAVDEMNGKELNGRQVYVGRAQKK 269
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ G+ +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
+ EF + FG+ M+ EK + + P S + +TDD + GFV+F+ E
Sbjct: 187 AREFTNVYIKNFGE----DMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ ++NG + G ++ V A+++
Sbjct: 243 DAQKAVDDMNGKELNGRQVYVGRAQKK 269
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ G+ +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ EK + P S + +TDD + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ +A+ E+NG + G ++ V A+++
Sbjct: 243 DAQRAVDEMNGKEMNGKQVYVGRAQKK 269
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 22/92 (23%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVEK---GRGFVTFDSPESSDKAITDDCARGFVTFD 208
G + +E L++ FS FG SV + ++ GRGF GFV+F+
Sbjct: 199 GEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGF-------------------GFVSFE 239
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ E + KA+ E+NG + G + V A+++++
Sbjct: 240 NHEDAQKAVDEMNGKELNGRIMFVGRAQKKME 271
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 303 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGF----------------- 345
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 346 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 381
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ F+ FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ G+ +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
+ EF + FG+ M+ EK + P S + +TDD + GFV+F+ E
Sbjct: 187 AREFTNVYIKNFGE----DMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ ++NG + G ++ V A+++
Sbjct: 243 DAQKAVDDMNGKELNGRQVYVGRAQKK 269
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 362 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 404
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L ++LA+R+
Sbjct: 405 --GFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRK 440
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRNKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L ++LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRK 371
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 268 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 310
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 311 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 346
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 162 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 217
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 218 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 246
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 303 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGF----------------- 345
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 346 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 381
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 165 SIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPESSDKAITEV 220
+++ K M+ E+ +G + P S K +TD+ + GFV+F+ E + KA+ E+
Sbjct: 192 NVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 221 NGTHVQGVKLKVSLARRQLK 240
NG + G ++ V A+++++
Sbjct: 252 NGKDLNGKQIYVGRAQKKVE 271
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ G+ +E LR+ FS FG I S + +E GR GF
Sbjct: 280 GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 322
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 323 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 358
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
+ EF + FG+ M+ EK + + P S + +TDD + GFV+F+ E
Sbjct: 174 AREFTNVYIKNFGE----DMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHE 229
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ ++NG + G ++ V A+++
Sbjct: 230 DAQKAVDDMNGKELNGRQVYVGRAQKK 256
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S V ME + RGF GFV F SPE
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEGGRSRGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L VSLA R+
Sbjct: 346 ATKAVTEMNGIIVATKPLYVSLAHRK 371
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 338 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 380
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 381 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 416
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 232 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHE 287
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 288 DARKAVDEMNGKELNGKQIYVGRAQKKVE 316
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + ++ GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 222 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 264
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V V+LA+R+
Sbjct: 265 --GFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRK 300
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 116 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 171
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 172 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 200
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 228 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 270
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V V+LA+R+
Sbjct: 271 --GFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRK 306
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 122 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 177
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 178 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 206
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E+GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEEGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E+GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEEGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 24/103 (23%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ F +GK SV + ++ K RGF
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV+++ E ++KA+ ++NGT + G + V A+++
Sbjct: 234 -------GFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKK 269
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E+GR GF GFV F SPE
Sbjct: 292 IDDEKLRKEFSPFGSITSAKVMLEEGRSKGF-------------------GFVCFSSPEE 332
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 333 ATKAVTEMNGRIVGSKPLYVALAQRK 358
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 16 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 56
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 57 ATKAVTEMNGRIVGSKPLYVALAQRK 82
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E+GR GF GFV F SPE
Sbjct: 306 IDDEKLRKEFSPFGSITSAKVMLEEGRSKGF-------------------GFVCFSSPEE 346
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 347 ATKAVTEMNGRIVGSKPLYVALAQRK 372
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + ++ L++ F +GK SV + + K RGF
Sbjct: 187 KAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGF------------ 234
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NGT + G + V A+++++
Sbjct: 235 -------GFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKME 272
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS +G I S + E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 24/99 (24%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA 201
++++ G + ++ LR+ FS FGK SV + ++ + +GF
Sbjct: 192 NVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGF------------------ 233
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV F+ E + KA+ ++NG + G L V A+++L+
Sbjct: 234 -GFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLE 271
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E+GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEEGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 24/103 (23%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ F +GK SV + ++ K RGF
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV+++ E ++KA+ ++NGT + G + V A+++
Sbjct: 234 -------GFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKK 269
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E+GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEEGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ F +GK SV + + K RGF
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NGT + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKME 271
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 60 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 100
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 101 ATKAVTEMNGRIVGSKPLYVALAQRK 126
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E+GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEEGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G +++E L++ F +GK SV + + K RGF
Sbjct: 186 KAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GF++++ E ++KA+ ++NGT + G + V A+++++
Sbjct: 234 -------GFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKME 271
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ F FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ F FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 55 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 95
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 96 ATKAVTEMNGRIVGSKPLYVALAQRK 121
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 28/141 (19%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFL 160
+ K K L V++ + +R +K Y ++ L +LA + G ++++ I +E L
Sbjct: 289 EHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQ----GVNLYIKNLDDDIDDEKL 344
Query: 161 RQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
RQ FS++G I S + E + +GF GFV F SP+ + KA+
Sbjct: 345 RQEFSVYGVITSAKVMCDEKDTSKGF-------------------GFVCFSSPDEATKAV 385
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
TE+NG + + V+LA+R+
Sbjct: 386 TEMNGRMIGSKPIYVALAQRK 406
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ F FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 49/100 (49%), Gaps = 25/100 (25%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 89 GVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 131
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV F SPE + KA+ E+NG V L V+LA QLK
Sbjct: 132 --GFVCFSSPEEATKAVKEMNGRTVATKPLYVALA--QLK 167
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 30/155 (19%)
Query: 89 QPFSAIQPEDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTI 148
Q SA+Q + + V+ K L V + + +R + + + E R+A + G +
Sbjct: 271 QAASAVQALNGKDVNCKE--LYVGRAQKKAEREAMLRAKFEELRSERIAKYQ----GMNL 324
Query: 149 FVQGA--GISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARG 203
+V+ I +E LR FS FG I S + V+ K RGF G
Sbjct: 325 YVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGF-------------------G 365
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
FV + SPE + +A+TE+NG ++G + V+LA+R+
Sbjct: 366 FVCYASPEEATRAVTEMNGRMIKGKPIYVALAQRR 400
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E+GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEEGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 55 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 95
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 96 ATKAVTEMNGRIVGSKPLYVALAQRK 121
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 28/142 (19%)
Query: 102 VDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEF 159
++ K + L V + + +R KK Y E+ L ++A + G +FV+ I +E
Sbjct: 295 LEFKSQKLYVGRAQKKYERLQELKKQYEEAKLEKMAKYQ----GVNLFVKNLDDTIDDEL 350
Query: 160 LRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
L++ F FG I SV + E K +GF GFV F SPE + +A
Sbjct: 351 LKKEFESFGTITSVKVMRNETGKSKGF-------------------GFVCFSSPEEATRA 391
Query: 217 ITEVNGTHVQGVKLKVSLARRQ 238
ITE N V G L V+LA+R+
Sbjct: 392 ITEKNQQIVAGKPLYVALAQRK 413
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 24/101 (23%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESS 192
P+ + G IF++ A I + L FS+FG I S + E K +GF
Sbjct: 131 PSMRKNGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDETGKSKGF--------- 181
Query: 193 DKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFV F+ ++ +AI +NG + G+++ V+
Sbjct: 182 ----------GFVHFEEDTAASEAIDAINGMMLNGLEVYVA 212
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 248 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 290
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+T +NG V L V+LA+R+
Sbjct: 291 --GFVCFSSPEEATKAVTGMNGRIVATKPLYVALAQRK 326
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 142 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 197
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 198 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 226
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E+GR GF GFV F SPE
Sbjct: 311 IDDEKLRKEFSPFGSITSAKVMLEEGRSKGF-------------------GFVCFSSPEE 351
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 352 ATKAVTEMNGRIVGSKPLYVALAQRK 377
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ F +GK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV+F+ E ++KA+ E+NG + G L V A+++
Sbjct: 234 -------GFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKK 269
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 AIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 311 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 351
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 352 ATKAVTEMNGRIVGSKPLYVALAQRK 377
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS +GK SV + + K +GF
Sbjct: 192 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGF------------ 239
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+F+ E ++KA+ E+NG + G + V A+++++
Sbjct: 240 -------GFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVE 277
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGAITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS +GK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+F+ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVE 271
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS +GK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+F+ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVE 271
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 26 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 66
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 67 EATKAVTEMNGRIVATKPLYVALAQRK 93
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 273 IDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 313
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 314 ATKAVTEMNGRIVATKPLYVALAQRK 339
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 273 IDDERLRKEFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 313
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 314 ATKAVTEMNGKIVATKPLYVALAQRK 339
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ F +GK SV + + K RGF
Sbjct: 186 KAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+F+ E ++KA+ E+NGT + G + V A+++++
Sbjct: 234 -------GFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKME 271
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVE 271
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 AIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATEPLYVALAQRK 371
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRREFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVE 271
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVE 271
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 318 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 358
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 359 ATKAVTEMNGRIVGSKPLYVALAQRK 384
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 80 TDRSTVSAYQPFSAIQPEDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPN 139
T RS AY F QP D P + L V++R + V K + ++ P+
Sbjct: 48 TRRSLGYAYVNFQ--QPADVMPTSTSSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPS 105
Query: 140 EKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKA 195
+ G +F++ I + L FS FG I C V + +G+
Sbjct: 106 LRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYA----------- 154
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232
FV F++ E++DKAI ++NG + K+ V
Sbjct: 155 --------FVHFETQEAADKAIEKMNGMLLNDRKVFV 183
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVE 271
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 302 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 342
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 343 ATKAVTEMNGRIVGSKPLYVALAQRK 368
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 327 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 367
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 368 ATKAVTEMNGRIVGSKPLYVALAQRK 393
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E LR+ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVE 271
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E LR+ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVE 271
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRREFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 29/143 (20%)
Query: 100 EPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISE 157
E +D KP L V + + +R K+ + + RL + G ++V+ I +
Sbjct: 256 EIIDGKP--LYVGRAQKKAERQQELKRRFEALKMERLNRYQ----GVNLYVKNLDDTIDD 309
Query: 158 EFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215
E LR+ FS FG I S V ME + +GF GFV F SPE + K
Sbjct: 310 ERLRKEFSPFGTITSAKVMMEDNRSKGF-------------------GFVCFSSPEEATK 350
Query: 216 AITEVNGTHVQGVKLKVSLARRQ 238
A+TE+NG V L V+LA+R+
Sbjct: 351 AVTEMNGRIVGSKPLYVALAQRK 373
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 24/91 (26%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICS---VSMEVEKGRGFVTFDSPESSDK 194
EK K ++V+ G ++EE LR F +GKI S +S + K +GF
Sbjct: 186 EKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGF----------- 234
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHV 225
GFV F+SPE+++ A+ +NG +
Sbjct: 235 --------GFVAFESPEAAETAVEALNGKEI 257
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 271
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 322 IDDEKLRREFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 362
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 363 ATKAVTEMNGRIVGSKPLYVALAQRK 388
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 28/141 (19%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFL 160
D K K L V + + +R KK Y + + +L ++ G +FV+ I +E L
Sbjct: 305 DYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQ----GVNLFVKNLDDSIDDEKL 360
Query: 161 RQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
++ F FG I SV + ++ K +GF GFV+F SPE + +AI
Sbjct: 361 KEEFQSFGTISSVKVMIDESGKSKGF-------------------GFVSFSSPEEASRAI 401
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
+E+N + G L V+LA+R+
Sbjct: 402 SEMNQHMLAGKPLYVALAQRK 422
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 280 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 320
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 321 ATKAVTEMNGRIVGSKPLYVALAQRK 346
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E LR+ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVE 271
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 322 IDDEKLRREFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 362
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 363 ATKAVTEMNGRIVGSKPLYVALAQRK 388
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 234 IDDEKLRREFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 274
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 275 ATKAVTEMNGRIVGSKPLYVALAQRK 300
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E LR+ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVE 271
>gi|62087504|dbj|BAD92199.1| PABPC4 protein variant [Homo sapiens]
Length = 358
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 21/84 (25%)
Query: 157 EEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
+E LR+ FS FG I S + +E GR GF GFV F SPE +
Sbjct: 5 DEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEEAT 45
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
KA+TE+NG V L V+LA+R+
Sbjct: 46 KAVTEMNGRIVGSKPLYVALAQRK 69
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E L + FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 GIDDERLWKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E L + FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 GIDDERLWKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + E GR GF GFV F SPE
Sbjct: 306 IDDERLRKEFSQFGTITSARVMTEGGRTKGF-------------------GFVCFSSPEE 346
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 347 ATKAVTEMNGRIVVAKPLYVALAQRK 372
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 22/82 (26%)
Query: 160 LRQHFSIFGKICSVSM-EVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
LR+ F +FGKI S M E+G RGF GFV+FD E++ KA
Sbjct: 208 LREMFEVFGKIISAKMMNTEEGQKRGF-------------------GFVSFDDHEAAAKA 248
Query: 217 ITEVNGTHVQGVKLKVSLARRQ 238
+ E+N V+G ++ V A+++
Sbjct: 249 VEELNNKEVEGKEIYVGRAQKK 270
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 26/100 (26%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR-- 202
++++ G +S E L++ FSIFGK SV K +TD+ R
Sbjct: 192 NVYIKNFGEEMSNERLQETFSIFGKTLSV--------------------KVMTDNIGRSK 231
Query: 203 --GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV F+ + + KA+ ++NG + G L V A+++++
Sbjct: 232 GFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRME 271
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 296 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 336
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 337 ATKAVTEMNGRIVGSKPLYVALAQRK 362
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 28/137 (20%)
Query: 107 KFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHF 164
K L V++ + +R +K Y ++ L +LA + G ++++ I +E LRQ F
Sbjct: 288 KTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQ----GVNLYIKNLDDDIDDEKLRQEF 343
Query: 165 SIFGKICSVSMEV-EKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221
S++G I S + EKG +GF GFV F SP+ + KA+TE+N
Sbjct: 344 SVYGVITSAKVMCDEKGTSKGF-------------------GFVCFSSPDEATKAVTEMN 384
Query: 222 GTHVQGVKLKVSLARRQ 238
G + + V+LA+R+
Sbjct: 385 GRMIGSKPIYVALAQRK 401
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 22/84 (26%)
Query: 160 LRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
LR+ FS FGK SV + ++ + +GF GFV F+ E + KA
Sbjct: 207 LREIFSRFGKTLSVKVMMDHTGRSKGF-------------------GFVNFEKHEEAQKA 247
Query: 217 ITEVNGTHVQGVKLKVSLARRQLK 240
+ ++NG + G + V A+++L+
Sbjct: 248 VADMNGKEINGRMVYVGRAQKRLE 271
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SP+
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPDE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS +GK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+F+ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVE 271
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SP+
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPDE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|149027994|gb|EDL83445.1| rCG38266, isoform CRA_d [Rattus norvegicus]
Length = 365
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+ +
Sbjct: 256 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 312
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIK---AETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SP+
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPDE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS+FG I S + ++ GR GF GFV F SPE
Sbjct: 298 IDDERLRKEFSVFGTITSAKVMMDDGRSKGF-------------------GFVCFSSPEE 338
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+T++NG V L V+LA+R+
Sbjct: 339 ATKAVTDMNGRIVGTKPLYVALAQRK 364
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SP+
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPDE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 24/85 (28%)
Query: 160 LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPESSDK 215
LR+ FS FGK SV K + D+ R GFV F+ E + K
Sbjct: 207 LREIFSRFGKTLSV--------------------KVMMDNTGRSKGFGFVNFEKHEEAQK 246
Query: 216 AITEVNGTHVQGVKLKVSLARRQLK 240
A+ ++NG + G + V A+++L+
Sbjct: 247 AVADMNGKEINGRMVYVGRAQKRLE 271
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S V +E K F+T T GFV F SPE
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMIEENKTESFIT-----------TRSKGFGFVCFSSPEE 355
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 356 ATKAVTEMNGRIVGSKPLYVALAQRK 381
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 25/105 (23%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICS---VSMEVEKGRGFVTFDSPESSDK 194
EK K ++V+ G +SEE LR F FGKI S +S + K +GF
Sbjct: 186 EKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGF----------- 234
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTH-VQGVKLKVSLARRQ 238
GFV F+SPE+++ A+ +NG V+G L V A+++
Sbjct: 235 --------GFVAFESPEAAETAVDALNGKELVEGKPLYVGRAQKK 271
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + E GR GF GFV F SPE
Sbjct: 311 IDDERLRKEFAQFGTITSAKVMTEGGRSKGF-------------------GFVCFSSPEE 351
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 352 ATKAVTEMNGRIVVAKPLYVALAQRK 377
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E GR GF GFV F SPE
Sbjct: 298 IDDERLRKEFAPFGTITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 338
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 339 ATKAVTEMNGRIVGTKPLYVALAQRK 364
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E GR GF GFV F SPE
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIVGTKPLYVALAQRK 373
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 25/106 (23%)
Query: 139 NEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSD 193
EK K ++V+ G S+E LR+ F +G+I S M E G RGF
Sbjct: 185 GEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGF---------- 234
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTH-VQGVKLKVSLARRQ 238
GFV F+ P+++++A E+NG V+G L V A+++
Sbjct: 235 ---------GFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKK 271
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + +R K++Y + L +L+ + G +FV+ I E L + F
Sbjct: 309 LYVGRAQKKRERLDELKRLYESTRLEKLSKYQ----GVNLFVKNLDDSIDSEKLEEEFKP 364
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 365 FGTITSARVMVDDAGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 405
Query: 224 HVQGVKLKVSLARRQ 238
+QG L V+LA+R+
Sbjct: 406 MIQGKPLYVALAQRK 420
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E GR GF GFV F SPE
Sbjct: 298 IDDERLRKEFAPFGTITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 338
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 339 ATKAVTEMNGRIVGTKPLYVALAQRK 364
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 25/106 (23%)
Query: 139 NEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSD 193
EK K ++V+ G S+E LR F +G+I S M E G RGF
Sbjct: 176 GEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGF---------- 225
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTH-VQGVKLKVSLARRQ 238
GFV F+ P+++++A E+NG V+G L V A+++
Sbjct: 226 ---------GFVAFEDPDAAERACLELNGKELVEGKPLYVGRAQKK 262
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E GR GF GFV F SPE
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIVGTKPLYVALAQRK 373
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 25/106 (23%)
Query: 139 NEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSD 193
EK K ++V+ G S+E LR+ F +G+I S M E G RGF
Sbjct: 185 GEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGF---------- 234
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTH-VQGVKLKVSLARRQ 238
GFV F+ P+++++A E+NG V+G L V A+++
Sbjct: 235 ---------GFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKK 271
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS+FG I S + ++ GR GF GFV F SPE
Sbjct: 298 IDDEHLRREFSVFGTITSAKVMMDDGRSKGF-------------------GFVCFSSPEE 338
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+N V L V+LA+R+
Sbjct: 339 ATKAVTEMNNRIVGTKPLYVALAQRK 364
>gi|119623956|gb|EAX03551.1| RD RNA binding protein, isoform CRA_a [Homo sapiens]
gi|221043386|dbj|BAH13370.1| unnamed protein product [Homo sapiens]
Length = 336
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+ +
Sbjct: 258 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 314
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ V +QPF
Sbjct: 56 MDTATATEQAKQLVKSGAISAIKAETK---NSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E L + FS FG I S + +E+GR GF GFV F SPE
Sbjct: 306 INDERLWKEFSPFGTITSAKVMMEEGRSRGF-------------------GFVCFSSPEE 346
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 347 ATKAVTEMNGRIIGSKPLYVALAQRK 372
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F PE
Sbjct: 230 IDDERLRKEFTPFGTITSAKVMMEEGRSKGF-------------------GFVCFSQPEE 270
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 271 ATKAVTEMNGRIVGSKPLYVALAQRK 296
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 29/143 (20%)
Query: 100 EPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISE 157
E V+ KP F V + + +R K+ + + + RL+ + G ++V+ I +
Sbjct: 256 EIVEGKPLF--VGRAQKKAERQQELKRKFEQLKMERLSRYQ----GVNLYVKNIDDNIDD 309
Query: 158 EFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215
E LR+ F+ FG I S + +E GR GF GFV F S E + K
Sbjct: 310 ERLRKEFTPFGTITSAKVMLEDGRSKGF-------------------GFVCFSSAEEATK 350
Query: 216 AITEVNGTHVQGVKLKVSLARRQ 238
A+TE+NG V L V+LA+R+
Sbjct: 351 AVTEMNGRIVGSKPLYVALAQRK 373
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 25/105 (23%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICS---VSMEVEKGRGFVTFDSPESSDK 194
EK K ++V+ G S++ LR+ F +G+I S +S + K +GF
Sbjct: 186 EKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGF----------- 234
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTH-VQGVKLKVSLARRQ 238
GFV F+ PE+++KA+ +NG V+G L V A+++
Sbjct: 235 --------GFVAFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKK 271
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E L++ FS FG I S + E GR GF GFV F SPE
Sbjct: 304 GIDDERLQKEFSPFGTITSTKVMTEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA++E+NG V L V+LA+R+
Sbjct: 345 EATKAVSEMNGRIVATKPLYVALAQRK 371
>gi|148694803|gb|EDL26750.1| RD RNA-binding protein, isoform CRA_e [Mus musculus]
Length = 334
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+ +
Sbjct: 254 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 310
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIK---AETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI ++ LR+ FS +G I S + E G +GF
Sbjct: 309 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGF----------------- 351
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 352 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 387
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPESSDKAITDD 199
++++ G + ++ LR+ FS FGK SV + ++ KG GFV F+ E + KA
Sbjct: 192 NVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARGSS 251
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
C P +A+ ++NG + G + V A+++L+
Sbjct: 252 CCA-----QRPPLRWQAVADMNGKEINGRIVYVGRAQKRLE 287
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E L++ FS FG I S + E GR GF GFV F SPE
Sbjct: 304 GIDDERLQKEFSPFGTITSTKVMTEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA++E+NG V L V+LA+R+
Sbjct: 345 EATKAVSEMNGRIVATKPLYVALAQRK 371
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F PE
Sbjct: 329 IDDERLRKEFTPFGTITSAKVMMEEGRSKGF-------------------GFVCFSQPEE 369
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 370 ATKAVTEMNGRIVGSKPLYVALAQRK 395
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E L++ FS FG I S + E GR GF GFV F SPE
Sbjct: 279 GIDDERLQKEFSPFGTITSTKVMTEGGRSKGF-------------------GFVCFSSPE 319
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA++E+NG V L V+LA+R+
Sbjct: 320 EATKAVSEMNGRIVATKPLYVALAQRK 346
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F PE
Sbjct: 307 IDDERLRKEFTPFGTITSAKVMMEEGRSKGF-------------------GFVCFSQPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIVGSKPLYVALAQRK 373
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F PE
Sbjct: 350 IDDERLRKEFTPFGTITSAKVMMEEGRSKGF-------------------GFVCFSQPEE 390
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 391 ATKAVTEMNGRIVGSKPLYVALAQRK 416
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E L++ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDERLQKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + +R K++Y + L +L + G +FV+ I E L + F
Sbjct: 309 LYVGRAQKKRERLDELKRLYESTRLEKLLKYQ----GVNLFVKNLDDSIDSEKLEEEFKP 364
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 365 FGTITSARVMVDDAGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 405
Query: 224 HVQGVKLKVSLARRQ 238
+QG L V+LA+R+
Sbjct: 406 MIQGKPLYVALAQRK 420
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E L++ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDERLQKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 116 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 156
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 157 ATKAVTEMNGRIVGSKPLYVALAQRK 182
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I + +E GR GF GFV F SPE
Sbjct: 301 IDDEKLRKEFSPFGSITRAEVMLEDGRSKGF-------------------GFVCFSSPEE 341
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 342 ATKAVTEMNGRIVGSKPLYVALAQRK 367
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 36/129 (27%)
Query: 113 KRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICS 172
+R+ + R + KK G +L R P++ + EE LR+ FS FG + S
Sbjct: 346 RRKAENKRAEILKKYQGVNLYVRNLPDD--------------MDEEGLRKEFSNFGTLTS 391
Query: 173 VS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVK 229
M +KG RGF GFV F +PE + KA+TE+NG +
Sbjct: 392 CRVMRDDKGVSRGF-------------------GFVCFSTPEEATKAVTEMNGKMMGKKP 432
Query: 230 LKVSLARRQ 238
L V LA+R+
Sbjct: 433 LYVCLAQRK 441
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 22/86 (25%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKG---RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
+EE +R+ FS++G+I SV + V++ +GF FV F PE
Sbjct: 272 TEEKIRELFSLYGEITSVYVPVDENEVPKGFA-------------------FVNFAKPEC 312
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+NG +G L V A+++
Sbjct: 313 AAKAVEELNGRDFEGKSLYVGRAQKK 338
>gi|225436819|ref|XP_002270390.1| PREDICTED: CUGBP Elav-like family member 5 isoform 1 [Vitis
vinifera]
gi|296086641|emb|CBI32276.3| unnamed protein product [Vitis vinifera]
Length = 437
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 346 EGPPGANLFIYH---IPQEFGDHELAHAFQQFGRVLSAKVFVDKATG------------- 389
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI+ +NG + G KLKV L R
Sbjct: 390 -ASKC-FGFVSYDSPASAQSAISMMNGCQLGGKKLKVQLKR 428
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + +R ++ Y +S L ++ EK +G N +F++ I +E LR+ FS
Sbjct: 292 LHVGRAQKKYERQQELRRQYEQSKLEKM---EKYQGVN-LFIKNLDDSIDDERLREEFSP 347
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I SV M E G+ GF GFV F +PE + KAITE N
Sbjct: 348 FGTITSVKVMTTENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 388
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 389 IVAGKPLYVAIAQRK 403
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + KG IF++ A I + L FS+FG I S + ++D+
Sbjct: 120 PSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKI---------------ATDEV 164
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
+ GFV F+S E++ +AI +NG + G ++ V+
Sbjct: 165 TGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVA 202
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI ++ LR+ FS +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 22/92 (23%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFD 208
G + ++ L++ FS FG SV + ++ + RGF GFV +
Sbjct: 199 GEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGF-------------------GFVNYG 239
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ E + KA+TE+NG V G + V A+++++
Sbjct: 240 NHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIE 271
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E LR+ F+ FG I S + +E GR GF GFV F +PE
Sbjct: 278 INDERLRREFAPFGTITSAKVMMEDGRSKGF-------------------GFVCFSAPEE 318
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 319 ATKAVTEMNGRIIVTKPLYVALAQRK 344
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F +PE
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMMEEGRSKGF-------------------GFVCFSAPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIIVTKPLYVALAQRK 373
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E LR+ F+ FG I S + +E GR GF GFV F +PE
Sbjct: 307 INDERLRREFAPFGTITSAKVMMEDGRSKGF-------------------GFVCFSAPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIIVTKPLYVALAQRK 373
>gi|359479768|ref|XP_003632354.1| PREDICTED: CUGBP Elav-like family member 5 isoform 2 [Vitis
vinifera]
Length = 447
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 356 EGPPGANLFIYH---IPQEFGDHELAHAFQQFGRVLSAKVFVDKATG------------- 399
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI+ +NG + G KLKV L R
Sbjct: 400 -ASKC-FGFVSYDSPASAQSAISMMNGCQLGGKKLKVQLKR 438
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 23/105 (21%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSD 193
P+ + G +F++ I + L FS FG I S + +E GR GF
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVMLEDGRSKGF---------- 140
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 141 ---------GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 176
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F +PE
Sbjct: 286 IDDERLRKEFAPFGTITSAKVMMEEGRSKGF-------------------GFVCFSAPEE 326
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 327 ATKAVTEMNGRIIVTKPLYVALAQRK 352
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI ++ LR+ FS +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTF 207
G + ++ LR+ FS FG SV K + DD R GFV +
Sbjct: 199 GEDMDDKRLREIFSAFGNTLSV--------------------KVMMDDTGRSRGFGFVNY 238
Query: 208 DSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ E + KA++E+NG V G + V A+++++
Sbjct: 239 GNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIE 271
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E LR+ F+ FG I S + +E GR GF GFV F +PE
Sbjct: 307 INDERLRREFAPFGTITSAKVMMEDGRSKGF-------------------GFVCFSAPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIIVTKPLYVALAQRK 373
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F +PE
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMMEEGRSKGF-------------------GFVCFSAPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIIVTKPLYVALAQRK 373
>gi|224128620|ref|XP_002320377.1| predicted protein [Populus trichocarpa]
gi|222861150|gb|EEE98692.1| predicted protein [Populus trichocarpa]
Length = 432
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FGK+ S + V+K G
Sbjct: 343 EGPPGANLFIYH---IPQEFGDQELANAFEAFGKVLSAKVFVDKVTG------------- 386
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP ++ AIT +NG + G KLKV L R
Sbjct: 387 -VSKC-FGFVSYDSPAAAQNAITMMNGFQLGGKKLKVQLKR 425
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F +PE
Sbjct: 278 IDDERLRKEFAPFGTITSAKVMMEEGRSKGF-------------------GFVCFSAPEE 318
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 319 ATKAVTEMNGRIIVTKPLYVALAQRK 344
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 27/136 (19%)
Query: 107 KFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHF 164
K L V + + ++R K+ + + + RL + G ++V+ I +E LR+ F
Sbjct: 251 KILYVGRAQKKNERQMELKRRFEQLKMERLTRYQ----GVNLYVKNLDDSIDDERLRKEF 306
Query: 165 SIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222
S FG I S + +E+GR GF GFV F + E + KA+TE+NG
Sbjct: 307 SPFGTITSAKVMLEEGRSKGF-------------------GFVCFSAAEEATKAVTEMNG 347
Query: 223 THVQGVKLKVSLARRQ 238
V L V+LA+R+
Sbjct: 348 RIVGSKPLYVALAQRK 363
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 24/104 (23%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKA 195
EK K ++V+ G +++E L++ F +G I S + ++ G RGF
Sbjct: 177 EKAKLFTNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKSRGF------------ 224
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHV-QGVKLKVSLARRQ 238
GFV F++PES++ A+ E+NG + +G L V A+++
Sbjct: 225 -------GFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKK 261
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L VS+ + +R KK Y S L ++A + G +F++ I +E L++ F+
Sbjct: 291 LFVSRAQKKYERMQELKKQYEASRLEKMAKYQ----GVNLFIKNLDDSIDDEKLKEEFAP 346
Query: 167 FGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I SV M E G RGF GFV F +PE + KAITE N
Sbjct: 347 YGNITSVRVMRTENGKSRGF-------------------GFVCFSTPEEATKAITEKNQQ 387
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 388 IVAGKPLYVAIAQRK 402
>gi|328874161|gb|EGG22527.1| Zinc finger protein [Dictyostelium fasciculatum]
Length = 1780
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 28/127 (22%)
Query: 114 RETNDDR--TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGIS--EEFLRQHFSIFGK 169
R+ +DR +PVD+K S LT + + G+TI V G GI E+ L++ F ++GK
Sbjct: 212 RDRENDRVMSPVDRK-DDLSPLTTTSSSIDSGTGDTIHVAGFGIRIREDDLKEKFEVYGK 270
Query: 170 ICSVSMEVEK----GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHV 225
+ S S+ V+ RGF GFVT+ + E +D+AI ++GT +
Sbjct: 271 VKSCSVLVDPNTKISRGF-------------------GFVTYATSEEADEAIRLMDGTKI 311
Query: 226 QGVKLKV 232
G +KV
Sbjct: 312 DGYPIKV 318
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F +PE
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMMEEGRSKGF-------------------GFVCFSAPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIIVTKPLYVALAQRK 373
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F +PE
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMMEEGRSKGF-------------------GFVCFSAPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIIVTKPLYVALAQRK 373
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F +PE
Sbjct: 278 IDDERLRKEFAPFGTITSAKVMMEEGRSKGF-------------------GFVCFSAPEE 318
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 319 ATKAVTEMNGRIIVTKPLYVALAQRK 344
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F +PE
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMMEEGRSKGF-------------------GFVCFSAPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIIVTKPLYVALAQRK 373
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I S + +E+GR GF GFV F +PE
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMMEEGRSKGF-------------------GFVCFSAPEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIIVTKPLYVALAQRK 373
>gi|294884882|gb|ADF47449.1| TIA1-like protein [Dugesia japonica]
Length = 383
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD------ 198
TI+V G G+ EE LR+ F FG I V + EKG FV FDS E + +AI
Sbjct: 219 TIYVGGITNGLCEELLRESFKEFGDILEVRIFKEKGYAFVRFDSHEGATQAIIRMHGKEV 278
Query: 199 -----DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
C+ G + D E+S I ++ V SL +Q+
Sbjct: 279 GSQLCKCSWGKESNDLKETSQNGILNPFSIYINPVGYPYSLLTQQI 324
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + E GR GF GFV F SPE
Sbjct: 221 IDDEKLRKEFSAFGTITSAKVMTEGGRSKGF-------------------GFVCFSSPEE 261
Query: 213 SDKAITEVNGTHVQGVKLKVSLARR 237
+ KA+TE+NG + L V+LA+R
Sbjct: 262 ATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 24/104 (23%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDK 194
+K K N ++++ I +E L+ F FGKI S + KGRGF
Sbjct: 101 DKMKKFNNVYIKNFSEEIDDEKLKIWFETFGKIISAKVMTGYDGKGRGF----------- 149
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV+++ PE+++KA+TE+N + L V A+++
Sbjct: 150 --------GFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKR 185
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G+ I+V+ +S+E LR HFS+ G I S + + DK I+
Sbjct: 291 GSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRD--------------DKGISKGF-- 334
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F +PE ++KA+ +G G L VSLA+R+
Sbjct: 335 GFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRK 370
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG---RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
ISE LR+ FS FGKI S+++ + +GF GFV FD+PE
Sbjct: 200 ISETLLREKFSSFGKIISLAVAKDSNGMSKGF-------------------GFVNFDNPE 240
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ +A+ +NG + L V+ A+++
Sbjct: 241 DAKRAMETMNGLQLGSKILYVARAQKK 267
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
+ +E LR+ FS FG I S + E GR GF GFV F SPE
Sbjct: 306 VDDERLRKEFSQFGTITSARVMSEGGRSKGF-------------------GFVCFSSPEE 346
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 347 ATKAVTEMNGRIIVSKPLYVALAQRK 372
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 28/115 (24%)
Query: 125 KKVYGESLLTR----LAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSM--- 175
KKVY + R +K K N ++++ G + ++ +R+ F FGKI S +
Sbjct: 166 KKVYVGKFIPRKERIALLGDKMKRFNNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTD 225
Query: 176 EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKL 230
E+ K RGF GFV+++ PE+++KA+ +NG + G K+
Sbjct: 226 EIGKSRGF-------------------GFVSYEEPEAAEKAVDNLNGMELGGGKV 261
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E G RGF GFV F +PE
Sbjct: 610 IDDERLRKAFSPFGTITSAKVMMEGGHSRGF-------------------GFVCFSAPEE 650
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA++E+NG V L V+LA+R+
Sbjct: 651 AAKAVSEMNGKLVATKPLYVALAQRK 676
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 41/159 (25%)
Query: 96 PEDSEPV----------DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGG 145
PED+E DS+ K L V + + ++R+ K+ Y + + R+ ++ +G
Sbjct: 250 PEDAEKAVNEMHEYQLPDSERK-LYVCRAQKKNERSAELKRRYEQQKVERM---QRYQGV 305
Query: 146 NTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR- 202
N ++V+ + +E LRQ+F +GKI +S K + DD R
Sbjct: 306 N-LYVKNLDDTVDDEVLRQNFESYGKI--------------------TSAKVMCDDNGRS 344
Query: 203 ---GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F+ P+ + KA+TE+NG + L V+LA+R+
Sbjct: 345 KGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRK 383
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G IF++ I + + FS+FG I S + + ES+ K
Sbjct: 99 PSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVA----------NDEESNSKG 148
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFV F++ ES+ KAI +VNG ++G K+ V
Sbjct: 149 Y------GFVHFETEESAQKAIEKVNGMLLEGKKVYVG 180
>gi|242045812|ref|XP_002460777.1| hypothetical protein SORBIDRAFT_02g034736 [Sorghum bicolor]
gi|241924154|gb|EER97298.1| hypothetical protein SORBIDRAFT_02g034736 [Sorghum bicolor]
Length = 171
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 23/105 (21%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T+FV G + ++EE+LRQ F+ G+I V + V K C GF
Sbjct: 18 TVFVGGLDSNVNEEYLRQIFTPHGEISYVKIPVGK-------------------HC--GF 56
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
V F S +++AI +NG+ + G K+++S R Q + A DA S
Sbjct: 57 VQFTSRSCAEEAIQMLNGSQIGGQKVRLSWGRTQNRQASQQDANS 101
>gi|356572661|ref|XP_003554485.1| PREDICTED: CUGBP Elav-like family member 2-like [Glycine max]
Length = 429
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 339 EGPPGANLFIYH---IPQEFGDQELATAFQPFGRVLSAKVFVDKATG------------- 382
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++D+PE++ AI+ +NG + G KLKV L R
Sbjct: 383 -VSKCF-GFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKR 421
>gi|294884878|gb|ADF47447.1| TIA1-like protein [Dugesia japonica]
Length = 323
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 136 LAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
L E P ++V G ++EE L HF FG+I SV + EKG F+ F + E++ +A
Sbjct: 200 LVYKEAPLTNTNVYVAGENLTEELLNCHFQEFGRIDSVKVYPEKGHAFINFVTHEAAARA 259
Query: 196 IT 197
I+
Sbjct: 260 IS 261
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 27/136 (19%)
Query: 107 KFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHF 164
K L V + + ++R K+ + + + RL + G ++V+ I +E LR+ F
Sbjct: 251 KVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQ----GVNLYVKNLDDSIDDERLRKEF 306
Query: 165 SIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222
S FG I S + +E+GR GF GFV F + E + KA+TE+NG
Sbjct: 307 SPFGTITSAKVMLEEGRSKGF-------------------GFVCFSAAEEATKAVTEMNG 347
Query: 223 THVQGVKLKVSLARRQ 238
V L V+LA+R+
Sbjct: 348 RIVGSKPLYVALAQRK 363
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 23/87 (26%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKA 195
EK K ++V+ G +++E L++ F +G I S V ++ K RGF
Sbjct: 177 EKAKLFTNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENKSRGF------------ 224
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNG 222
GFV F++PES++ A+ E+NG
Sbjct: 225 -------GFVAFENPESAEVAVQELNG 244
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 258 IDDEKLRKEFSPYGTITSAKVMTESGHSKGF-------------------GFVCFSSPEE 298
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 299 ATKAVTEMNGRIVSTKPLYVALAQRK 324
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I S + +E G RGF GFV F +P+
Sbjct: 296 IDDERLRTEFSPFGTITSAKVMMEGGHSRGF-------------------GFVCFSAPDE 336
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 337 AAKAVTEMNGKLVTSKPLYVALAQRK 362
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +RT KK Y L +L+ + G +FV+ I E L + F
Sbjct: 312 IYVGRAQKKRERTEELKKQYEAIRLEKLSKYQ----GVNLFVKNLDDQIDSEKLEEEFKP 367
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K RGF GFV F +PE + KAITE+N
Sbjct: 368 FGTITSAKVMVDDAGKSRGF-------------------GFVCFSTPEEATKAITEMNQR 408
Query: 224 HVQGVKLKVSLARRQ 238
V G L V+LA+R+
Sbjct: 409 MVNGKPLYVALAQRK 423
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + +R KK Y + L ++A + G +FV+ I +E L++ F+
Sbjct: 298 LFVGRAQKKYERIQSLKKQYESTRLEKMAKYQ----GVNLFVKNLDDSIDDEKLQEEFAP 353
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I SV M E G+ GF GFV F SPE + KAITE N
Sbjct: 354 FGNITSVKVMRTENGKSKGF-------------------GFVCFSSPEEATKAITEKNQQ 394
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 395 IVAGKPLYVAIAQRK 409
>gi|356505495|ref|XP_003521526.1| PREDICTED: CUGBP Elav-like family member 1-like [Glycine max]
Length = 431
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 341 EGPPGANLFIYH---IPQEFGDQELATAFQPFGRVLSAKVFVDKATG------------- 384
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++D+PE++ AI+ +NG + G KLKV L R
Sbjct: 385 -VSKCF-GFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKR 423
>gi|124512318|ref|XP_001349292.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23499061|emb|CAD51141.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 286
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 28/164 (17%)
Query: 137 APNEKPKGGNT-IFVQGAGISEEFLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDK 194
AP+ P G N +F + ++ L QHF FG + S ++ + GR
Sbjct: 142 APSFGPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGR------------- 188
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS--TT 252
+ GFV+F++PES+ AI ++G +V G LKV L + + +N A T
Sbjct: 189 ----NKGYGFVSFNNPESALNAIKGMHGFYVSGKHLKVQLKKGEEHYVQMNTPAQPQLTP 244
Query: 253 WSAIACHQSLKGNHKDKRHQVIYDDDIFGEEPPLEDPDSIAMET 296
+ Q + GNH HQ ++G ++ P+ + T
Sbjct: 245 AQPYSVQQPIIGNH----HQPYMTHLMYGG---MDSPNQMRYNT 281
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 28/141 (19%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFL 160
D + + L V + + +R KK Y + L +LA + G +F++ I +E L
Sbjct: 283 DFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQ----GVNLFIKNLDDSIDDEKL 338
Query: 161 RQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
+ F+ FG I SV + E RGF GFV F +PE + KAI
Sbjct: 339 KDEFAPFGTITSVKVMKDEAGSSRGF-------------------GFVCFSTPEEATKAI 379
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
TE N V G L V++A+R+
Sbjct: 380 TEKNQQLVAGKPLYVAIAQRK 400
>gi|297808057|ref|XP_002871912.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297317749|gb|EFH48171.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 335
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 18/91 (19%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
GN+++V G I+EE +R+ FSI+G I +V + +D+++ C
Sbjct: 6 GNSVYVGGLPYDITEEAVRRVFSIYGTILTVKI---------------VNDRSVRGKCY- 49
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFVTF + S+D AI +++G + G ++V+
Sbjct: 50 GFVTFSNRRSADDAIEDMDGKSIGGRAVRVN 80
>gi|18420085|ref|NP_568388.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20260444|gb|AAM13120.1| glycine-rich RNA-binding protein, putative [Arabidopsis thaliana]
gi|28059296|gb|AAO30045.1| glycine-rich RNA-binding protein, putative [Arabidopsis thaliana]
gi|332005391|gb|AED92774.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 337
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 18/91 (19%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
GN+++V G I+EE +R+ FSI+G + +V + +D+++ C
Sbjct: 6 GNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKI---------------VNDRSVRGKCY- 49
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFVTF + S+D AI +++G + G ++V+
Sbjct: 50 GFVTFSNRRSADDAIEDMDGKSIGGRAVRVN 80
>gi|388511171|gb|AFK43647.1| unknown [Medicago truncatula]
Length = 218
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 128 EGPPGANLFIYH---IPQEFGDQELANAFQPFGRVLSAKVFVDKATG------------- 171
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSPE++ AI+ +NG + G KLKV R
Sbjct: 172 -VSKC-FGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKR 210
>gi|21553602|gb|AAM62695.1| glycine-rich RNA-binding protein-like [Arabidopsis thaliana]
Length = 337
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 18/91 (19%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
GN+++V G I+EE +R+ FSI+G + +V + +D+++ C
Sbjct: 6 GNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKI---------------VNDRSVRGKCY- 49
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFVTF + S+D AI +++G + G ++V+
Sbjct: 50 GFVTFSNRRSADDAIEDMDGKSIGGRAVRVN 80
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 92 SAIQPEDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQ 151
+A+Q + VD L V + + +R KK + + + R+ +K +G N ++V+
Sbjct: 294 AAVQALNDSAVDGSDLKLHVCRAQKKSERHAELKKKHEQHKVERM---QKYQGVN-LYVK 349
Query: 152 GA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFV 205
+ +E L++ F FG I S + G V + S + +TD+ R GFV
Sbjct: 350 NLDESVDDEALKKQFENFGNITSAKV------GLVPLEFFISLFQVMTDENGRSKGFGFV 403
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
F+ PE + A+TE+N V L V+LA+R+
Sbjct: 404 CFEKPEEATTAVTEMNSKMVCSKPLYVALAQRK 436
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 138 PNEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSD 193
P + G IF++ I + + FS+FG I C V+ +E + V D SS
Sbjct: 128 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSK 187
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFV F++ E++ AI +VNG + G K+ V
Sbjct: 188 -------GYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG 220
>gi|242087741|ref|XP_002439703.1| hypothetical protein SORBIDRAFT_09g018610 [Sorghum bicolor]
gi|241944988|gb|EES18133.1| hypothetical protein SORBIDRAFT_09g018610 [Sorghum bicolor]
Length = 455
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 364 EGPPGANLFIYH---IPQEFGDHDLANAFHSFGRVLSAKVFVDKATG------------- 407
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI+ +NG + G KLKV L R
Sbjct: 408 -VSKCF-GFVSYDSPASAQAAISVMNGYQLGGKKLKVQLKR 446
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDERLRKEFSPYGTITSAKVMTEAGQSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRR 371
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 24/99 (24%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCA 201
I+++ G +++E L++ FS FGK SV M EKGR GF
Sbjct: 192 NIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGF------------------ 233
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV + E + KA+ E+NG + G + V A+++L+
Sbjct: 234 -GFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLE 271
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + ++ GR GF GFV F SPE
Sbjct: 298 IDDERLRREFSAFGTIKSAKVMMDDGRSKGF-------------------GFVYFSSPEE 338
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+T++NG V L V+LA+R+
Sbjct: 339 ATKAVTDMNGRIVGTKPLYVTLAQRK 364
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 37/177 (20%)
Query: 74 ERKLTETDRSTVSAYQPFSAIQPEDSEPVDSK--------PKFLKVSKRETNDDRTPVDK 125
R +T+ +S + F +PED+E K K L V + + ++R K
Sbjct: 212 HRVMTKDGKSRGFGFVAFE--KPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELK 269
Query: 126 KVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR-- 181
+ + + + RL G ++V+ I +E LR+ F+ +G I S + +++GR
Sbjct: 270 RRFEQLKMERLTRYH----GVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEGRSK 325
Query: 182 GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GF GFV F +P+ + KA+TE+NG V L V+LA+R+
Sbjct: 326 GF-------------------GFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRK 363
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 27/107 (25%)
Query: 124 DKKVYGESLLTRLA----PNEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICS--VSM 175
+KKVY ++R EK K ++V+ G ++EE LR F FG I S V
Sbjct: 157 EKKVYVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMT 216
Query: 176 EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222
+ K RGF GFV F+ PE +++A+ ++NG
Sbjct: 217 KDGKSRGF-------------------GFVAFEKPEDAEEAVQKLNG 244
>gi|357129324|ref|XP_003566314.1| PREDICTED: CUGBP Elav-like family member 2-like [Brachypodium
distachyon]
Length = 459
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 368 EGPPGANLFIYH---IPQEFGDQDLANAFQNFGRVLSAKVFVDKATG------------- 411
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI+ +NG + G KLKV L R
Sbjct: 412 -ASKCF-GFVSYDSPASAQAAISMMNGFQLGGKKLKVQLKR 450
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
+ V + + +R KK Y + L +LA + G +FV+ I E L + F
Sbjct: 302 IYVGRAQKKRERLEELKKQYEAARLEKLAKYQ----GVNLFVKNLDDAIDSEKLEEEFKS 357
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F +PE + KAITE+N
Sbjct: 358 FGTITSAKVMVDDAGKSKGF-------------------GFVCFTTPEEATKAITEMNTR 398
Query: 224 HVQGVKLKVSLARRQ 238
+ G L V+LA+R+
Sbjct: 399 MINGKPLYVALAQRK 413
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 22/86 (25%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
SEE + F+ +GKI S+ +E + K +GF GFV F++ +S
Sbjct: 244 SEESFEKLFAPYGKITSIYLEKDQDGKSKGF-------------------GFVNFENHDS 284
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+N + G K+ V A+++
Sbjct: 285 AVKAVEELNDKEINGQKIYVGRAQKK 310
>gi|403415675|emb|CCM02375.1| predicted protein [Fibroporia radiculosa]
Length = 156
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 33/119 (27%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE----------KGRGFVTFDSPESSDK 194
TIFV G G + E L ++FS FG + V + + K RGF
Sbjct: 10 TIFVGGIGDDVDETSLLENFSTFGDVIEVQIPLAASNPSQPTETKHRGF----------- 58
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTW 253
GFVTF SP + AI ++ + G LKV++A RQ+K AP+ A + W
Sbjct: 59 --------GFVTFASPADAQDAIDNMDLNELNGRVLKVNIA-RQVK-APVQGAGNRAIW 107
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + ++ GR GF GFV F SPE
Sbjct: 612 IDDERLRREFSAFGTIKSAKVMMDDGRSKGF-------------------GFVYFSSPEE 652
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+T++NG V L V+LA+R+
Sbjct: 653 ATKAVTDMNGRIVGTKPLYVTLAQRK 678
>gi|449680423|ref|XP_002163984.2| PREDICTED: uncharacterized protein LOC100213995 [Hydra
magnipapillata]
Length = 406
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 51/217 (23%)
Query: 37 KDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSAIQP 96
KDA+EVA+KLL SG + I + E FKR KLT + T + + +
Sbjct: 174 KDAKEVAKKLLASGQLK-IAK--SGAEDRSFKRA-----KLTNEKKFTSPVHSKENNLLD 225
Query: 97 EDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGIS 156
+ P S FL D P V+G + L+ + + V G ++
Sbjct: 226 DFGPP--SVQNFLLY-------DFDP--PHVHGNTTLSLFESVNR-----VLRVAGFNLT 269
Query: 157 EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
+ L F FG+I S+ E EKG G+VT+++ C E +++A
Sbjct: 270 KNILDTAFPPFGQIKSIYFEKEKGCGYVTYET-----------C----------EMAERA 308
Query: 217 ITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTW 253
E++GT VQ V ++V AR++ P +D + TW
Sbjct: 309 KEELHGTMVQNVTIRVDYARKR----PYDD--NRNTW 339
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 25/110 (22%)
Query: 134 TRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDS 188
TRL K +G N +FV+ ++ E L + F FG I S + V+ K +GF
Sbjct: 324 TRLEKLSKYQGVN-LFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDETGKSKGF----- 377
Query: 189 PESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F +PE + KAITE+N V G L V+LA+R+
Sbjct: 378 --------------GFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRK 413
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 30/154 (19%)
Query: 91 FSAIQPEDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNT-IF 149
F + E +E D+ + V+ ND V K + S R+A E+ K T +F
Sbjct: 181 FGFVHYETAEAADAAIE--NVNGMSLNDREVFVGKHI---SKKDRVAKFEEMKANFTNVF 235
Query: 150 VQ--GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGF 204
V+ G+ +E L F +GKI S+ E + K +GF GF
Sbjct: 236 VKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGF-------------------GF 276
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ F++ +++ KA+ E+N V G K+ V A+++
Sbjct: 277 INFENHDAAVKAVEELNDKEVNGQKIYVGRAQKK 310
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 19/96 (19%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G ++V+ GI +E LR+ F+ +G I S V D P+S
Sbjct: 291 GVNLYVKNLDDGIDDERLRKEFAPYGTITSAK---------VMTDGPQSR--------GF 333
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 334 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRR 369
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 22/92 (23%)
Query: 152 GAGISEEFLRQHFSIFGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFD 208
G ++E L++ FS FG+ SV M+ E+GR GF GFV F
Sbjct: 197 GEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGF-------------------GFVNFA 237
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NGT + G + V A+++L+
Sbjct: 238 HHGDAQKAVDEMNGTELNGKVIYVGRAQKRLE 269
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + + GR GF GFV F +PE
Sbjct: 404 IDDENLRKEFSSFGTITSAKVMMNNGRSKGF-------------------GFVCFSAPEE 444
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+NG V L V+LA+R+
Sbjct: 445 ATTAVTEMNGRLVASKPLYVALAQRK 470
>gi|413948822|gb|AFW81471.1| hypothetical protein ZEAMMB73_420516 [Zea mays]
Length = 486
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 395 EGPPGANLFIYH---IPQEFGDHDLANAFHSFGRVLSAKVFVDKATG------------- 438
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI+ +NG + G KLKV L R
Sbjct: 439 -VSKCF-GFVSYDSPASAQAAISVMNGYQLGGKKLKVQLKR 477
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 97 EDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG-- 154
+D D K L V + + ++R ++ + + + RL + G ++V+
Sbjct: 251 DDMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQ----GVNLYVKNLDDT 306
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I +E LR+ F+ +G I S + E GR F GFV F SPE +
Sbjct: 307 IDDERLRKEFAPYGTITSAKVMTEGGRNKGGF----------------GFVCFSSPEEAT 350
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
KA+TE+NG + L V+LA+R+
Sbjct: 351 KAVTEMNGRILVSKPLYVALAQRK 374
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 290 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 330
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 331 ATKAVTEMNGRIVSTKPLYVALAQRK 356
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 25/109 (22%)
Query: 135 RLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSP 189
R+ +K +G N ++V+ I +E L+Q FS +G I S M EKG +GF
Sbjct: 308 RMEQFQKYQGAN-LYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGF------ 360
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + +A TE NG + G + V++A+R+
Sbjct: 361 -------------GFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRK 396
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 28/124 (22%)
Query: 123 VDKKVYGESLLTR---LAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSM-- 175
V KKV+ + R LA + K N +FV+ ++EE + +HFS FG I +V +
Sbjct: 190 VGKKVFVAKFVKRSDRLAATGETKFTN-VFVKNLDPEMAEEEINEHFSTFGVITNVVIMK 248
Query: 176 -EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSL 234
E +K +GF GFV FD PE++ A+ +N + + + V
Sbjct: 249 DENDKSKGF-------------------GFVNFDDPEAARAAVETMNNSQLGSRTIYVGR 289
Query: 235 ARRQ 238
A+++
Sbjct: 290 AQKK 293
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 25/109 (22%)
Query: 135 RLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSP 189
R+ +K +G N ++V+ I +E L+Q FS +G I S M EKG +GF
Sbjct: 309 RMEQFQKYQGAN-LYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGF------ 361
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + +A TE NG + G + V++A+R+
Sbjct: 362 -------------GFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRK 397
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 28/124 (22%)
Query: 123 VDKKVYGESLLTR---LAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSM-- 175
V KKV+ + R LA + K N +FV+ ++EE +++HFS FG I +V +
Sbjct: 191 VGKKVFVAKFVKRSDRLAATGETKFTN-VFVKNLDPEMAEEEIKEHFSTFGVITNVVIMK 249
Query: 176 -EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSL 234
E +K +GF GFV FD PE++ A+ +N + + + V
Sbjct: 250 DENDKSKGF-------------------GFVNFDDPEAARAAVETMNNSQLGSRTIYVGR 290
Query: 235 ARRQ 238
A+++
Sbjct: 291 AQKK 294
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
+ +E LR+ F FG I S + E GR GF GFV F SPE
Sbjct: 306 LDDERLRKEFMPFGTITSAKVMSEGGRSKGF-------------------GFVCFSSPEE 346
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 347 ATKAVTEMNGRIVSTKPLYVALAQRK 372
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 22/82 (26%)
Query: 160 LRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
LRQ F+ FG I S M EKG RGF GFV F SPE + KA
Sbjct: 319 LRQEFANFGTITSAKVMSDEKGISRGF-------------------GFVCFSSPEEATKA 359
Query: 217 ITEVNGTHVQGVKLKVSLARRQ 238
+TE+NG + L V+LA+R+
Sbjct: 360 VTEMNGRIIISKPLYVALAQRK 381
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ FG I SV + +E GR GF GFV F E
Sbjct: 307 IDDERLRKEFAPFGTITSVKVMMEDGRSKGF-------------------GFVCFSLAEE 347
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 348 ATKAVTEMNGRIVGSKPLYVALAQRK 373
>gi|413944942|gb|AFW77591.1| hypothetical protein ZEAMMB73_325553 [Zea mays]
Length = 456
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 365 EGPPGANLFIYH---IPQEFGDHDLASAFHSFGRVLSAKVFVDKATG------------- 408
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI+ +NG + G KLKV L R
Sbjct: 409 -VSKCF-GFVSYDSPASAQAAISVMNGYQLGGKKLKVQLKR 447
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRREFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ E+ L+ FS FGK+ SV M + G RGF GFV F+ E
Sbjct: 202 VDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGF-------------------GFVNFEKHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+T++NG V+G L V A+++++
Sbjct: 243 EAQKAVTDMNGKEVRGRLLYVGRAQKRVE 271
>gi|399217955|emb|CCF74842.1| unnamed protein product [Babesia microti strain RI]
Length = 252
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 27/112 (24%)
Query: 133 LTRLAPNEKPKG---GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKG---RGFV 184
L + APN + GN +FV +++ L +HF FG I S ++ +K RGF
Sbjct: 148 LGKYAPNRLYQYAPPGNNLFVFHIPCTWNDQNLYEHFCKFGNIISSRVQCDKNGRNRGF- 206
Query: 185 TFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV++D+PESS +AI +NG + LKV L R
Sbjct: 207 ------------------GFVSYDNPESSAEAIKHMNGFNTGDKYLKVMLKR 240
>gi|357116772|ref|XP_003560152.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 470
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 24/104 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
TIFV G + I E +LRQ F+ +G++ V + V K C GF
Sbjct: 321 TIFVGGLDSNIDENYLRQVFTPYGEVGYVKIPVGK-------------------RC--GF 359
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARR-QLKVAPINDA 247
V F S +++AI +NGT + G +++S R Q K AP DA
Sbjct: 360 VQFTSRSCAEEAINALNGTPIGGNNVRLSWGRSTQNKQAPQQDA 403
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
IS+E LR FS +G I S + E G +GF GFV F SPE
Sbjct: 305 ISDEKLRTVFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGCIVGTKPLYVALAQRK 371
>gi|297604406|ref|NP_001055367.2| Os05g0373400 [Oryza sativa Japonica Group]
gi|215707181|dbj|BAG93641.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676313|dbj|BAF17281.2| Os05g0373400 [Oryza sativa Japonica Group]
Length = 466
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 375 EGPPGANLFIYH---IPQEFGDQDLAGAFQGFGRVLSAKVFVDKATGL------------ 419
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GF+++DSP S+ AI+ +NG + G KLKV L R
Sbjct: 420 --SKCF-GFISYDSPASAQTAISMMNGYQLGGKKLKVQLKR 457
>gi|413951358|gb|AFW84007.1| hypothetical protein ZEAMMB73_397161 [Zea mays]
Length = 455
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +E+ L F FG++ S + V+K G
Sbjct: 362 EGPPGANLFIYH---IPQEYGDQELSSAFQSFGRVVSAKVFVDKATG------------- 405
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI +NG + G KLKV L R
Sbjct: 406 -VSKCF-GFVSYDSPASAQAAINRMNGYQLGGKKLKVQLKR 444
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +RT KK Y L +L+ + G +FV+ I E L + F
Sbjct: 318 IYVGRAQKKRERTEELKKQYEAVRLEKLSKYQ----GVNLFVKNLDEQIDSEKLEEEFKP 373
Query: 167 FGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPESSDKAITEVNG 222
FG I +S K + DD + GFV F +PE + KAITE+N
Sbjct: 374 FGTI--------------------TSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQ 413
Query: 223 THVQGVKLKVSLARRQ 238
V G L V+LA+R+
Sbjct: 414 RMVNGKPLYVALAQRK 429
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI ++ LR+ F +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTF 207
G + ++ LR+ FS FG SV K + DD R GFV +
Sbjct: 199 GEDMDDKRLREIFSAFGNTLSV--------------------KVMMDDSGRSRGFGFVNY 238
Query: 208 DSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ E + KA++E+NG V G + V A+++++
Sbjct: 239 GNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIE 271
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVSTKPLYVALAQRK 371
>gi|294884873|gb|ADF47445.1| TIA1-like protein, partial [Dugesia japonica]
Length = 430
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 140 EKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDD 199
E P+ +++V G ++EE LR F FGKI +V EK FV +D T D
Sbjct: 200 EAPESNTSVYVLGESLTEELLRPIFERFGKIKNVKAFPEKNHAFVNYD---------THD 250
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTW 253
A AI ++NG + ++LK + ++ + N+ + +
Sbjct: 251 AAA------------YAIQQLNGYKINNIELKCNWGKKNAALGNANNQSMGNQY 292
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 22/89 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ E+ L+ FS FGK+ SV + ++ RGF GFV F+ E
Sbjct: 202 VDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGF-------------------GFVNFEKHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ ++NG V G L V A+++++
Sbjct: 243 EAQKAVMDMNGKEVSGRLLYVGRAQKRVE 271
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 22/89 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ E+ L+ FS FGK+ SV + ++ RGF GFV F+ E
Sbjct: 202 VDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGF-------------------GFVNFEKHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ ++NG V G L V A+++++
Sbjct: 243 EAQKAVMDMNGKEVSGRLLYVGRAQKRVE 271
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 28/142 (19%)
Query: 102 VDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEF 159
++ K + L V + + +R KK Y + L +LA + G +FV+ I +E
Sbjct: 282 LEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQ----GVNLFVKNLDDSIDDEK 337
Query: 160 LRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
L++ F+ FG I S + E RGF GFV F +PE + KA
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGF-------------------GFVCFSTPEEATKA 378
Query: 217 ITEVNGTHVQGVKLKVSLARRQ 238
ITE N V G L V++A+R+
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRK 400
>gi|414886904|tpg|DAA62918.1| TPA: hypothetical protein ZEAMMB73_604225 [Zea mays]
Length = 484
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T+FV G + ++EE+LRQ F+ +G+I V + V K C GF
Sbjct: 320 TVFVGGLDSNVNEEYLRQIFTPYGEISYVKIPVGK-------------------HC--GF 358
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V F S +++AI +NG+ V G K+++S R
Sbjct: 359 VQFTSRSCAEEAIRMLNGSQVGGQKVRLSWGR 390
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGMITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 24/99 (24%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA 201
I+V+ A + E+ L++ FS FGK+ SV + + RGF
Sbjct: 192 NIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGF------------------ 233
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV F++ E + KA+ +NG V G L V A+++++
Sbjct: 234 -GFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVE 271
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI ++ LR+ F +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTF 207
G + ++ LR+ FS FG SV K + DD R GFV +
Sbjct: 199 GEDMDDKRLREIFSAFGNTLSV--------------------KVMMDDSGRSRGFGFVNY 238
Query: 208 DSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ E + KA++E+NG V G + V A+++++
Sbjct: 239 GNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIE 271
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 312 INDEKLRKEFSPYGMITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 352
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 353 ATKAVTEMNGRIVGTKPLYVALAQRK 378
>gi|226491568|ref|NP_001142233.1| uncharacterized protein LOC100274401 [Zea mays]
gi|194707728|gb|ACF87948.1| unknown [Zea mays]
gi|414886903|tpg|DAA62917.1| TPA: hypothetical protein ZEAMMB73_604225 [Zea mays]
Length = 465
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T+FV G + ++EE+LRQ F+ +G+I V + V K C GF
Sbjct: 320 TVFVGGLDSNVNEEYLRQIFTPYGEISYVKIPVGK-------------------HC--GF 358
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V F S +++AI +NG+ V G K+++S R
Sbjct: 359 VQFTSRSCAEEAIRMLNGSQVGGQKVRLSWGR 390
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R V KK Y L ++A + G +FV+ + +E L + F+
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFAP 344
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I S M E G+ GF GFV F +PE + KAITE N
Sbjct: 345 YGTITSAKVMRTENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 385
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 386 IVAGKPLYVAIAQRK 400
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R V KK Y L ++A + G +FV+ + +E L + F+
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFAP 344
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I S M E G+ GF GFV F +PE + KAITE N
Sbjct: 345 YGTITSAKVMRTENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 385
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 386 IVAGKPLYVAIAQRK 400
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F S E
Sbjct: 206 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFPSREE 246
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 247 ATKAVTEMNGRIVGSKPLYVALAQRK 272
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R V KK Y L ++A + G +FV+ + +E L + F+
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFAP 344
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I S M E G+ GF GFV F +PE + KAITE N
Sbjct: 345 YGTITSAKVMRTENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 385
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 386 IVAGKPLYVAIAQRK 400
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R V KK Y L ++A + G +FV+ + +E L + F+
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFAP 344
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I S M E G+ GF GFV F +PE + KAITE N
Sbjct: 345 YGTITSAKVMRTENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 385
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 386 IVAGKPLYVAIAQRK 400
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 16/96 (16%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G ++V+ G++E+ +R+ F+ +G I S + V+ +S + K
Sbjct: 339 GVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVD--------NSNNNQSKGF------ 384
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F +PE + KAITE+NG + + V+LA+R+
Sbjct: 385 GFVCFSAPEEATKAITEMNGKMLLNKPIYVALAQRR 420
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 97 EDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--G 154
E+ + K + L VS+ + +R KK Y S L ++A + G +FV+
Sbjct: 274 EELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQ----GVNLFVKNLDDS 329
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I +E L++ F+ +G I SV M + G+ GF GFV F +PE
Sbjct: 330 IDDEKLKEEFAPYGTITSVRVMRTDNGKSKGF-------------------GFVCFSTPE 370
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KAITE N V G L V++A+R+
Sbjct: 371 EATKAITEKNQQIVAGKPLYVAIAQRK 397
>gi|226492020|ref|NP_001152526.1| LOC100286166 [Zea mays]
gi|195657131|gb|ACG48033.1| RNA binding protein [Zea mays]
Length = 463
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +E+ L F FG++ S + V+K G
Sbjct: 370 EGPPGANLFIYH---IPQEYGDQELSSAFQSFGRVVSAKVFVDKATG------------- 413
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI +NG + G KLKV L R
Sbjct: 414 -VSKCF-GFVSYDSPASAQAAINRMNGYQLGGKKLKVQLKR 452
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R V KK Y L ++A + G +FV+ + +E L + F+
Sbjct: 178 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFAP 233
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I S M E G+ GF GFV F +PE + KAITE N
Sbjct: 234 YGTITSAKVMRTENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 274
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 275 IVAGKPLYVAIAQRK 289
>gi|297852632|ref|XP_002894197.1| hypothetical protein ARALYDRAFT_474095 [Arabidopsis lyrata subsp.
lyrata]
gi|297340039|gb|EFH70456.1| hypothetical protein ARALYDRAFT_474095 [Arabidopsis lyrata subsp.
lyrata]
Length = 450
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGN-----------TIFVQG--AGISEEFLRQHFSIF 167
TP YG+ ++ GGN TIFV G A ++EE L Q FS F
Sbjct: 296 TPKRAAAYGQQNGSQALTLAGGHGGNGSLSDGESNNSTIFVGGLDADVTEEDLMQPFSQF 355
Query: 168 GKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
G++ SV + V KG GFV F + +S+++AI +
Sbjct: 356 GEVVSVKIPVGKGCGFVQFANRQSAEEAIGN 386
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 21/74 (28%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 44 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 84
Query: 212 SSDKAITEVNGTHV 225
+ KA+TE+NG V
Sbjct: 85 EATKAVTEMNGRIV 98
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R V KK Y L ++A + G +FV+ + +E L + F+
Sbjct: 178 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFTP 233
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I S M E G+ GF GFV F +PE + KAITE N
Sbjct: 234 YGTITSAKVMRTENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 274
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 275 IVAGKPLYVAIAQRK 289
>gi|255559360|ref|XP_002520700.1| RNA binding protein, putative [Ricinus communis]
gi|223540085|gb|EEF41662.1| RNA binding protein, putative [Ricinus communis]
Length = 436
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F +GK+ S + V+K G
Sbjct: 346 EGPPGSNLFIYH---IPQEFGDQELASAFQPYGKVLSAKVFVDKATG------------- 389
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP ++ AI +NG + G KLKV L R
Sbjct: 390 -VSKC-FGFVSYDSPTAAQTAINMMNGCQLGGKKLKVQLKR 428
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R V KK Y L ++A + G +FV+ + +E L + F+
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFAP 344
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I S M E G+ GF GFV F +PE + KAITE N
Sbjct: 345 YGTITSAKVMRTENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 385
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 386 IVAGKPLYVAIAQRK 400
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
+ V + + +R KK Y + + RL+ + G +FV+ I E L + F
Sbjct: 178 IYVGRAQKKRERMEELKKQYESTRVERLSKYQ----GVNLFVKNLDDSIDSEKLEEEFKP 233
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 234 FGSITSAKVMVDEAGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 274
Query: 224 HVQGVKLKVSLARRQ 238
+ G L V+LA+R+
Sbjct: 275 MILGKPLYVALAQRK 289
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I +E LR+ F FG I +S K ITD R GFV F SP
Sbjct: 297 IDDEGLREAFKQFGNI--------------------TSAKVITDLNGRSKGFGFVCFSSP 336
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
E + KA+TE+NG G L V LA+R+
Sbjct: 337 EEATKAVTEMNGRIFGGKPLYVGLAQRK 364
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 34/155 (21%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSD 193
P+ + G +F++ I + L FS FG I C V ++ +GF
Sbjct: 82 PSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDINGSKGF---------- 131
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS-LARRQLKVAPINDAASSTT 252
GFV ++S ES+ +AI +VNG ++ K+ V+ R ++ DAA T
Sbjct: 132 ---------GFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFT 182
Query: 253 ----------WSAIACHQSLKGNHKDKRHQVIYDD 277
W A ++ + + H+VI D+
Sbjct: 183 NLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDE 217
>gi|302786984|ref|XP_002975262.1| hypothetical protein SELMODRAFT_442777 [Selaginella moellendorffii]
gi|300156836|gb|EFJ23463.1| hypothetical protein SELMODRAFT_442777 [Selaginella moellendorffii]
Length = 427
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I EF L F+ FG + S + V+K G
Sbjct: 337 EGPPGANLFIYH---IPAEFGDSELSTAFASFGNVISAKVFVDKTTGI------------ 381
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSPE++ AI +NG + G +LKV L R
Sbjct: 382 --SKC-FGFVSYDSPEAAQSAINVMNGFQLSGKRLKVQLKR 419
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ +G I S + + G RGF GFV F SPE
Sbjct: 305 IDDEKLRKEFAPYGTITSAKVMTDGGHSRGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVSTKPLYVALAQRK 371
>gi|15222783|ref|NP_175383.1| RNA-binding protein 47A [Arabidopsis thaliana]
gi|378522727|sp|F4I3B3.1|RB47A_ARATH RecName: Full=Polyadenylate-binding protein RBP47A;
Short=Poly(A)-binding protein RBP47A; AltName:
Full=RNA-binding protein 47A; Short=AtRBP47A
gi|332194327|gb|AEE32448.1| RNA-binding protein 47A [Arabidopsis thaliana]
Length = 445
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
TIFV G A ++EE L Q FS FG++ SV + V KG GFV F + +S+++AI +
Sbjct: 328 TIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGN 381
>gi|357126722|ref|XP_003565036.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1
[Brachypodium distachyon]
Length = 450
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 359 EGPPGANLFIYH---IPQEFGDQELSDAFQRFGRVVSAKVFVDKATG------------- 402
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI +NG + G KLKV L R
Sbjct: 403 -ASKCF-GFVSYDSPASAQSAIGMMNGFQLGGKKLKVQLKR 441
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G +FV+ I +E LRQ FS+FG I S + V++ G
Sbjct: 347 GVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGI---------------SKGF 391
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSL 262
GFV F +P+ + KA+TE+N + + V+LA+R K A+ A+ HQ +
Sbjct: 392 GFVCFSNPDEATKAVTEMNNRMLANKPIYVALAQR--KEVRRQQLAAQMQQRAMRAHQQM 449
>gi|302811484|ref|XP_002987431.1| hypothetical protein SELMODRAFT_269263 [Selaginella moellendorffii]
gi|300144837|gb|EFJ11518.1| hypothetical protein SELMODRAFT_269263 [Selaginella moellendorffii]
Length = 428
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I EF L F+ FG + S + V+K G
Sbjct: 338 EGPPGANLFIYH---IPAEFGDSELSTAFASFGNVISAKVFVDKTTGI------------ 382
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSPE++ AI +NG + G +LKV L R
Sbjct: 383 --SKC-FGFVSYDSPEAAQSAINVMNGFQLSGKRLKVQLKR 420
>gi|83314981|ref|XP_730596.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490366|gb|EAA22161.1| RNA recognition motif, putative [Plasmodium yoelii yoelii]
Length = 330
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 159 FLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
FL QHF FG + S ++ + GR + GFV+F++PES+ AI
Sbjct: 209 FLMQHFQHFGYVVSARIQRDANGR-----------------NKGYGFVSFNNPESALNAI 251
Query: 218 TEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSA--IACHQSLKGNH 266
++G +V G LKV L + + +N A A Q + GNH
Sbjct: 252 KGMHGFYVSGKHLKVQLKKGEEHYIQLNTPAQPQLTPAQPYTVQQPIMGNH 302
>gi|326528321|dbj|BAJ93342.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 467
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 376 EGPPGANLFIYH---IPQEFGDQDLAHAFQSFGRVLSAKVFVDKATG------------- 419
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP + AI+ +NG + G KLKV L R
Sbjct: 420 -ASKCF-GFVSYDSPAPAQAAISMMNGFQLGGKKLKVQLKR 458
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ +G I S + + G RGF GFV F SPE
Sbjct: 305 IDDEKLRKEFAPYGTITSAKVMTDGGHSRGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVSTKPLYVALAQRK 371
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I +E LR+ F FG I +S K ITD R GFV F SP
Sbjct: 297 IDDEGLREAFKQFGNI--------------------TSAKVITDLNGRSKGFGFVCFSSP 336
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
E + KA+TE+NG G L V LA+R+
Sbjct: 337 EEATKAVTEMNGRIFGGKPLYVGLAQRK 364
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 34/155 (21%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSD 193
P+ + G +F++ I + L FS FG I C V ++ +GF
Sbjct: 82 PSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDINGSKGF---------- 131
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS-LARRQLKVAPINDAASSTT 252
GFV ++S ES+ +AI +VNG ++ K+ V+ R ++ DAA T
Sbjct: 132 ---------GFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFT 182
Query: 253 ----------WSAIACHQSLKGNHKDKRHQVIYDD 277
W A ++ + + H+VI D+
Sbjct: 183 NLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDE 217
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 27/133 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + +R KK Y + L R + +G N ++++ + LR+ FS
Sbjct: 263 LYVGRAQKKSERIKELKKCYEQMKLERY---NRIQGAN-VYIKNLDDTFDNDRLRKEFSQ 318
Query: 167 FGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTH 224
FG I S + E GR GF GFV F +PE + KAITE++G
Sbjct: 319 FGAITSAKVMTEGGRSKGF-------------------GFVCFSTPEEASKAITEMDGRM 359
Query: 225 VQGVKLKVSLARR 237
+ + V+LA+R
Sbjct: 360 IGSKPIYVALAQR 372
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
EK K ++V+ G +++E L F +G I S V +P+ + K
Sbjct: 187 EKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSC----------VVMANPDGTSKGF- 235
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GF+ F+ PES++KA+TE+N + G L V A+++
Sbjct: 236 -----GFIAFEEPESAEKAVTEMNNYELNGTNLYVGRAQKK 271
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 27/139 (19%)
Query: 104 SKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLR 161
S K L V + + ++R K+ + + + RL G ++V+ I +E LR
Sbjct: 257 SDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYH----GVNLYVKNLDDTIDDERLR 312
Query: 162 QHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219
+ F+ +G I S + +++GR GF GFV F +P+ + KA+TE
Sbjct: 313 KEFAPYGTITSAKVMLDEGRSKGF-------------------GFVCFSAPDEATKAVTE 353
Query: 220 VNGTHVQGVKLKVSLARRQ 238
+NG V L V+LA+R+
Sbjct: 354 MNGRIVGSKPLYVALAQRK 372
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 23/86 (26%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKA 195
EK K ++V+ G ++EE L + F +G I S V M+ K RGF
Sbjct: 186 EKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKDGKSRGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVN 221
GFV F++P+++++A+ E+N
Sbjct: 234 -------GFVAFENPDAAERAVQELN 252
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 97 EDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--G 154
E+ D K + L V + + +R KK Y S + +LA + G +FV+
Sbjct: 279 EELNDTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQ----GVNLFVKNLDDS 334
Query: 155 ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ ++ L + F+ FG I SV + E +GF GFV F +PE
Sbjct: 335 VDDQKLEEEFAPFGTITSVKVMRDEAGNSKGF-------------------GFVCFSTPE 375
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KAITE N V G L V++A+R+
Sbjct: 376 EATKAITEKNQQIVAGKPLYVAIAQRK 402
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIIGTKPLYVALAQRK 371
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 22/89 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ E+ L+ FS FGK+ SV M+ G RGF GFV F+ E
Sbjct: 202 MDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGF-------------------GFVNFEKHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ ++NG V G +L V A+++++
Sbjct: 243 EAQKAVMDMNGKEVSGRQLYVGRAQKRVE 271
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R V KK Y L ++A + G +FV+ + +E L + F+
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFAP 344
Query: 167 FGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I S + E K +GF GFV F +PE + KAITE N
Sbjct: 345 YGTITSAKVMRSENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 385
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 386 IVAGKPLYVAIAQRK 400
>gi|357126724|ref|XP_003565037.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2
[Brachypodium distachyon]
Length = 459
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 368 EGPPGANLFIYH---IPQEFGDQELSDAFQRFGRVVSAKVFVDKATG------------- 411
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DSP S+ AI +NG + G KLKV L R
Sbjct: 412 -ASKCF-GFVSYDSPASAQSAIGMMNGFQLGGKKLKVQLKR 450
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I E L F FG I S + V+ K +GF GFV F SPE
Sbjct: 346 IDSEKLENEFKPFGNITSARVMVDEQGKSKGF-------------------GFVCFSSPE 386
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KAITE+N V+G L V+LA+R+
Sbjct: 387 EATKAITEMNQRMVEGKPLYVALAQRK 413
>gi|10120421|gb|AAG13046.1|AC011807_5 Putative RNA binding protein [Arabidopsis thaliana]
Length = 468
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
TIFV G A ++EE L Q FS FG++ SV + V KG GFV F + +S+++AI +
Sbjct: 351 TIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGN 404
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFAPYGMITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 22/89 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ E L+ FS FGKI SV M + G RGF GFV F+ E
Sbjct: 202 VDERCLQDLFSQFGKILSVKVMRDDSGHSRGF-------------------GFVNFEKHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+T++NG V G L V A+++++
Sbjct: 243 DAQKAVTDMNGKEVSGRLLYVGRAQKRVE 271
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 30/136 (22%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R+ K+ Y + + R+ ++ +G N ++V+ ++++ L+Q+F
Sbjct: 271 LYVCRAQKKNERSAELKRRYEQQKVERM---QRYQGVN-LYVKNLDDTVNDDILKQNFEA 326
Query: 167 FGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPESSDKAITEVNG 222
+GKI +S K + DD R GFV F+ P+ + KA+TE+NG
Sbjct: 327 YGKI--------------------TSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNG 366
Query: 223 THVQGVKLKVSLARRQ 238
+ L V+LA+R+
Sbjct: 367 KMMCTKPLYVALAQRK 382
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ +E L + FS FGKI S ++ V+ K +GF GFV F++PE
Sbjct: 210 LDKEALEKLFSKFGKITSAAVMVDADGKSKGF-------------------GFVAFENPE 250
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
++KA+TE++ + G + K+ + R Q K
Sbjct: 251 DAEKAVTEMHEYELPGTERKLYVCRAQKK 279
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G IF++ I + + FS+FG I S + + ES+ K
Sbjct: 98 PSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVA----------NDEESNSKG 147
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFV F++ ES+ KAI +VNG ++G K+ V
Sbjct: 148 Y------GFVHFETEESAQKAIEKVNGMLLEGKKVYVG 179
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 30/136 (22%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R+ K+ Y + + R+ ++ +G N ++V+ ++++ L+Q+F
Sbjct: 271 LYVCRAQKKNERSAELKRRYEQQKVERM---QRYQGVN-LYVKNLDDTVNDDILKQNFEA 326
Query: 167 FGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPESSDKAITEVNG 222
+GKI S K + DD R GFV F+ P+ + KA+TE+NG
Sbjct: 327 YGKITSA--------------------KVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNG 366
Query: 223 THVQGVKLKVSLARRQ 238
+ L V+LA+R+
Sbjct: 367 KMMCTKPLYVALAQRK 382
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ +E L + FS FGKI S ++ V+ K +GF GFV F++PE
Sbjct: 210 LDKEALEKLFSKFGKITSAAVMVDADGKSKGF-------------------GFVAFENPE 250
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
++KA+TE++ + G + K+ + R Q K
Sbjct: 251 DAEKAVTEMHEYELPGTERKLYVCRAQKK 279
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G IF++ I + + FS+FG I S + + ES+ K
Sbjct: 98 PSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVA----------NDEESNSKG 147
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFV F++ ES+ KAI +VNG ++G K+ V
Sbjct: 148 Y------GFVHFETEESAQKAIEKVNGMLLEGKKVYVG 179
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + +R K+ Y + L ++A + G +F++ I +E L++ F+
Sbjct: 291 LYVGRAQKKYERMQALKQQYEATRLEKMAKYQ----GVNLFIKNLDDSIDDEKLKEEFAP 346
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S M E G+ GF GFV F SPE + KAITE N
Sbjct: 347 FGTITSTKVMRTENGKSKGF-------------------GFVCFSSPEEATKAITEKNQQ 387
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 388 IVAGKPLYVAIAQRK 402
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
GIS++ LR+ FS FGKI S +V + + V+ S GFV F + E +
Sbjct: 329 GISDDQLRELFSTFGKITSC--KVMRDQNGVSKGS--------------GFVAFSTREEA 372
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
+AITE+NG + G L V+ A+R+
Sbjct: 373 SQAITEMNGKMLSGKPLYVAFAQRK 397
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 22/88 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
+ +E LR+ FS FG I S + +E GR GF GFV F SPE+
Sbjct: 55 VGDENLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEA 95
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQLK 240
KA+T++NG + L V+LARR+ K
Sbjct: 96 I-KAVTKMNGCVMSSKPLYVALARRRGK 122
>gi|407039238|gb|EKE39532.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 697
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 28/120 (23%)
Query: 157 EEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
E+ L+Q F FG I C V +P+ + + GF+ F++ + +
Sbjct: 15 EKILKQQFEKFGGITDCKV------------MRTPQGNSRKF------GFIGFENEDQAQ 56
Query: 215 KAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVI 274
AIT++NG ++Q KL+VSLA+ I D WS + S N DK+ +VI
Sbjct: 57 TAITKMNGAYIQSSKLQVSLAK------AIGDQTIERPWSKYSVGSSSFSN--DKKRKVI 108
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 280 INDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 320
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 321 ATKAVTEMNGRIVGTKPLYVALAQRK 346
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 139 NEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
N++ +G N ++V+ I+++ LR+HF+ +G I S + + +D
Sbjct: 289 NQRYQGVN-LYVKNLDDSITDDILREHFAPYGNITSSKVMTD-------------TDVEG 334
Query: 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
T GFV F S E + KA+TE+NG + L V+LA+R+
Sbjct: 335 TRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRK 376
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 30/135 (22%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R+ K+ Y + + R+ ++ +G N ++V+ ++++ L+Q+F
Sbjct: 135 LYVCRAQKKNERSAELKRRYEQQKVERM---QRYQGVN-LYVKNLDDTVNDDILKQNFEA 190
Query: 167 FGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPESSDKAITEVNG 222
+GKI S K + DD R GFV F+ P+ + KA+TE+NG
Sbjct: 191 YGKITSA--------------------KVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNG 230
Query: 223 THVQGVKLKVSLARR 237
+ L V+LA+R
Sbjct: 231 KMMCTKPLYVALAQR 245
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ +E L + FS FGKI S ++ V+ K +GF GFV F++PE
Sbjct: 74 LDKEALEKLFSKFGKITSAAVMVDADGKSKGF-------------------GFVAFENPE 114
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
++KA+TE++ + G + K+ + R Q K
Sbjct: 115 DAEKAVTEMHEYELPGTERKLYVCRAQKK 143
>gi|449707231|gb|EMD46930.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 685
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 28/120 (23%)
Query: 157 EEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
E+ L+Q F FG I C V +P+ + + GF+ F++ + +
Sbjct: 15 EKILKQQFEKFGGITDCKV------------MRTPQGNSRKF------GFIGFENEDQAQ 56
Query: 215 KAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVI 274
AIT++NG ++Q KL+VSLA+ I D WS + S N DK+ +VI
Sbjct: 57 TAITKMNGAYIQSSKLQVSLAK------AIGDQTIERPWSKYSVGSSSFSN--DKKRKVI 108
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G +FV+ I ++ LR+ F+ FG I S + E GR GF
Sbjct: 293 GVNLFVKNLDDNIDDKRLRKEFAQFGTITSAKVMTENGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KAI E+N ++ L V+LA+R+
Sbjct: 336 --GFVYFSSPEEATKAIVEMNEKIIEARPLYVALAQRK 371
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 27/102 (26%)
Query: 146 NTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR- 202
N ++V+ +E LR+ F ++GKI S K + DD +R
Sbjct: 190 NNVYVKNLSEETDDEKLREIFELYGKIISA--------------------KVMIDDSSRK 229
Query: 203 ----GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+F++PE++ KA+ +NG G L V A+ +++
Sbjct: 230 SKQFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTKIE 271
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 46/147 (31%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P + G IF++ I + L FS FG I S + +G GFV F++ E+
Sbjct: 91 PGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEA 150
Query: 192 SDKAIT-----------------------------DDCAR-----------GFVTFDSPE 211
+ KAI C + GFV F SPE
Sbjct: 151 AQKAINTMNGMLLNDRKVRSDYPWSLASLCPATLISSCFQVMTESSHSKGFGFVCFSSPE 210
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 211 EATKAVTEMNGRIVGTKPLYVALAQRK 237
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFL 160
+ K + L V + + +R KK Y S L +LA + G +F++ I +E L
Sbjct: 288 EYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQ----GINLFIKNLDDSIDDEKL 343
Query: 161 RQHFSIFGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
++ F+ FG I S M E G+ GF GFV F +PE + +AI
Sbjct: 344 KEEFAPFGTITSARVMRTENGKSKGF-------------------GFVCFSTPEEATRAI 384
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
TE N V G L V++A+R+
Sbjct: 385 TEKNQQIVAGKPLYVAIAQRK 405
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 24/101 (23%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESS 192
P+ + KG IF++ I + L + FS+FG I S + E K +GF
Sbjct: 123 PSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGF--------- 173
Query: 193 DKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFV F++ E++ +AI +NG + G ++ V+
Sbjct: 174 ----------GFVHFENEEAAREAIDAINGMLLNGQEVYVA 204
>gi|356500250|ref|XP_003518946.1| PREDICTED: CUGBP Elav-like family member 1-like [Glycine max]
Length = 426
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +E+ L F FG++ S + V+K G
Sbjct: 336 EGPPGANLFIYH---IPQEYGDQELTTAFQPFGRVLSAKIFVDKVTG------------- 379
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++D+PE++ AI+ +NG + G KLKV L R
Sbjct: 380 -VSKCF-GFVSYDTPEAAQAAISTMNGCQLGGKKLKVQLKR 418
>gi|393906337|gb|EJD74250.1| CBR-BUS-18 protein [Loa loa]
Length = 1331
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 21/98 (21%)
Query: 141 KPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
KP G ++++G + + LR FS +G I V +E +
Sbjct: 780 KPCRGPCLYIRGYDLVADSLRNVFSKYGAINRVFVEERQ--------------------- 818
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
F+T+ + E ++ AI E++G V G+ L+VS ARRQ
Sbjct: 819 KSAFITYATTEEAEVAIKEMDGNMVNGITLRVSFARRQ 856
>gi|449462310|ref|XP_004148884.1| PREDICTED: CUGBP Elav-like family member 2-like [Cucumis sativus]
gi|449491521|ref|XP_004158924.1| PREDICTED: CUGBP Elav-like family member 2-like [Cucumis sativus]
Length = 438
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 348 EGPPGANLFIYH---IPQEFGDRELANSFRAFGRVLSAKVFVDKTSG------------- 391
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DS E++ AI+ +NG + G KLKV L R
Sbjct: 392 -VSKCF-GFVSYDSAEAAQSAISTMNGCQLGGKKLKVQLKR 430
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I E+ +R F+ FG I SV M EKG RGF GF+ F S E
Sbjct: 339 IDEDKIRTEFAPFGTITSVKIMRDEKGKSRGF-------------------GFICFSSAE 379
Query: 212 SSDKAITEVNGTHVQGV--KLKVSLARR 237
+ KA+TE+NG +QG L V+LA+R
Sbjct: 380 EATKAVTEMNGQTIQGFPKPLYVALAQR 407
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 22/88 (25%)
Query: 154 GISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSP 210
G+ +E LR FS +G I S M+ EKG +GF GFV F SP
Sbjct: 304 GLDDERLRSEFSTYGTITSAKVMKDEKGISKGF-------------------GFVCFSSP 344
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ + KA+TE+NG + L V+LA+R+
Sbjct: 345 DEATKAVTEMNGRILVTKPLYVALAQRK 372
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 29/147 (19%)
Query: 97 EDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG-- 154
E+S P D +P L VS+ + ++R V K + + R + N G ++V+
Sbjct: 316 ENSVPFDVQPNRLYVSRAQKRNERQVVLKSQHEAA---RESQNRYQ--GVNLYVKNLSES 370
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG---RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
++E LR F +G I SVS++ ++ RGF GFV+F SP+
Sbjct: 371 MTESDLRSLFEPYGTISSVSIKTDESGISRGF-------------------GFVSFLSPD 411
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KAITE++ V+G L V L R+
Sbjct: 412 EATKAITEMHLKLVRGKPLYVGLHERK 438
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 22/85 (25%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
SEE L F ++GKI S+ ++ + KGR F GFV F+ PES+
Sbjct: 202 SEETLHTLFGVYGKISSLVLQSDSKGRPF-------------------GFVNFEDPESAK 242
Query: 215 KAITEVNGTHVQ--GVKLKVSLARR 237
KA+ ++ V GV+L + + R
Sbjct: 243 KAVANLHNALVTPLGVELNSNNSER 267
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 139 NEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
N++ +G N ++V+ I+++ LR+HF+ +G I S + + +D
Sbjct: 274 NQRYQGVN-LYVKNLDDSITDDILREHFAPYGNITSSKVMTD-------------TDVEG 319
Query: 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
T GFV F S E + KA+TE+NG + L V+LA+R+
Sbjct: 320 TRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRK 361
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIIGTKPLYVALAQRK 371
>gi|356535559|ref|XP_003536312.1| PREDICTED: CUGBP Elav-like family member 1-B-like [Glycine max]
Length = 429
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +E+ L F FG++ S + V+K G
Sbjct: 339 EGPPGANLFIYH---IPQEYGDEELATTFQPFGRVLSAKIFVDKVTG------------- 382
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++D+PE++ AI+ +NG + G KLKV L R
Sbjct: 383 -VSKCF-GFVSYDTPEAAQSAISTMNGCQLGGKKLKVQLKR 421
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +R KK Y + L +L+ + G +F++ I E L + F
Sbjct: 302 IYVGRAQKKRERLEELKKQYENTRLEKLSKYQ----GVNLFIKNLDDTIDSEKLEEEFKP 357
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 358 FGSITSARVMVDETGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 398
Query: 224 HVQGVKLKVSLARRQ 238
+ G L V+LA+R+
Sbjct: 399 MIYGKPLYVALAQRK 413
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
SEE ++ F +GKI S+ +E + K +GF GFV F++ E
Sbjct: 243 FSEEEFKKLFEAYGKITSIYLEKDHEGKSKGF-------------------GFVNFENHE 283
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
S+ KA+ E+N + G K+ V A+++
Sbjct: 284 SAVKAVDELNDKEINGQKIYVGRAQKK 310
>gi|27924240|gb|AAH45086.1| Tia1 protein, partial [Xenopus laevis]
Length = 427
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GAG+SE+ +RQ F +FG+I + + EKG F+ F + +
Sbjct: 267 GAGLSEQLMRQTFGVFGQILEIRVFPEKG---------------------YSFIRFSTHD 305
Query: 212 SSDKAITEVNGTHVQGVKLKVSLAR 236
S+ AI VNGT ++G +K +
Sbjct: 306 SAAHAIVSVNGTTIEGHVVKCYWGK 330
>gi|67479353|ref|XP_655058.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56472162|gb|EAL49670.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 685
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 28/120 (23%)
Query: 157 EEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
E+ L+Q F FG I C V +P+ + + GF+ F++ + +
Sbjct: 15 EKILKQQFEKFGGITDCKV------------MRTPQGNSRKF------GFIGFENEDQAQ 56
Query: 215 KAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVI 274
AIT++NG ++Q KL+VSLA+ I D WS + S N DK+ +VI
Sbjct: 57 TAITKMNGAYIQSSKLQVSLAK------AIGDQTIERPWSKYSVGSSSFSN--DKKRKVI 108
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEV-EKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+++E LR HF+ FG I S + V E GR GF GFV F+ PE
Sbjct: 359 LTDEGLRAHFAQFGTITSAKVMVDENGRSKGF-------------------GFVCFEKPE 399
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+N + L V+LA+R+
Sbjct: 400 EATAAVTEMNSKMIGAKPLYVALAQRK 426
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
+FV+ G + E L++ FS +G+I S V E K GF
Sbjct: 244 NVFVKNFGEHLDEAKLKEMFSKYGEINSA----------VVMTDAEGKPKGF------GF 287
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
V + PE++ KA+ ++N + ++G +LK+S+ R Q K
Sbjct: 288 VAYADPEAASKAVDDLNESILEGTELKLSVCRAQKK 323
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
IS+E LR FS +G I S V E + +GF GFV F SPE
Sbjct: 305 ISDEKLRTVFSPYGVITSAKVMTEGDHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGCIVGTKPLYVALAQRK 371
>gi|392864553|gb|EAS27556.2| hypothetical protein CIMG_09816 [Coccidioides immitis RS]
Length = 629
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++E+ L FS FGK+ +V ++ +KG G+V F PE+ KAI
Sbjct: 472 GVTEDLLESGFSKFGKVINVEIDKKKGFGYVDFAEPEALRKAI 514
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +RT KK Y L +L+ + G +F++ I E L + F
Sbjct: 314 IYVGRAQKKRERTEELKKQYEAIRLEKLSKYQ----GVNLFIKNLDDQIDSEKLEEEFKP 369
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F +PE + KAITE+N
Sbjct: 370 FGTITSAKVMVDDAGKSKGF-------------------GFVCFSTPEEATKAITEMNQR 410
Query: 224 HVQGVKLKVSLARRQ 238
+ G L V+LA+R+
Sbjct: 411 MINGKPLYVALAQRK 425
>gi|303318159|ref|XP_003069079.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108765|gb|EER26934.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 600
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++E+ L FS FGK+ +V ++ +KG G+V F PE+ KAI
Sbjct: 443 GVTEDLLESGFSKFGKVINVEIDKKKGFGYVDFAEPEALRKAI 485
>gi|196010826|ref|XP_002115277.1| hypothetical protein TRIADDRAFT_64182 [Trichoplax adhaerens]
gi|190582048|gb|EDV22122.1| hypothetical protein TRIADDRAFT_64182 [Trichoplax adhaerens]
Length = 432
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 148 IFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
IF+ G ISE+ LR FS+FG++ + KG GFV+F++ ES +A+T
Sbjct: 319 IFIGGLTPEISEKELRNEFSVFGEVKHIKTNTSKGFGFVSFENEESVKRALT 370
>gi|119176142|ref|XP_001240195.1| hypothetical protein CIMG_09816 [Coccidioides immitis RS]
Length = 600
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++E+ L FS FGK+ +V ++ +KG G+V F PE+ KAI
Sbjct: 443 GVTEDLLESGFSKFGKVINVEIDKKKGFGYVDFAEPEALRKAI 485
>gi|320031755|gb|EFW13714.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 599
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++E+ L FS FGK+ +V ++ +KG G+V F PE+ KAI
Sbjct: 443 GVTEDLLESGFSKFGKVINVEIDKKKGFGYVDFAEPEALRKAI 485
>gi|295665137|ref|XP_002793120.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278641|gb|EEH34207.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 592
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L FS FGK+ V ++ +KG G+V F PE +AI
Sbjct: 449 GVTEELLASGFSTFGKVIRVEIDKKKGFGYVDFAEPEGLSRAI 491
>gi|258572902|ref|XP_002545213.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905483|gb|EEP79884.1| predicted protein [Uncinocarpus reesii 1704]
Length = 574
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDD----CARGFVTFDS 209
G++EE L FS FGK+ V ++ +KG G++ F PE KAI V +
Sbjct: 437 GVTEELLDAGFSKFGKVVKVEIDKKKGFGYIDFADPEGLRKAIQASPVPIAQSQVVVLE- 495
Query: 210 PESSDKAITEVNGTHVQ 226
S A+ + G+H++
Sbjct: 496 -RRSTAAVAQARGSHIR 511
>gi|223948225|gb|ACN28196.1| unknown [Zea mays]
gi|414590425|tpg|DAA40996.1| TPA: hypothetical protein ZEAMMB73_114709 [Zea mays]
Length = 503
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 24/106 (22%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T+FV G + + EE+LRQ F+ +G+I V + V K C GF
Sbjct: 352 TVFVGGLDSNVDEEYLRQIFTPYGEISYVKIPVGK-------------------HC--GF 390
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARR-QLKVAPINDAAS 249
V F S +++AI +NG+ + G K ++S R Q + A +DA S
Sbjct: 391 VQFTSRSCAEEAIQMLNGSQIGGQKARLSWGRSTQNRQASQHDANS 436
>gi|212276053|ref|NP_001130512.1| uncharacterized protein LOC100191611 [Zea mays]
gi|194689348|gb|ACF78758.1| unknown [Zea mays]
gi|414590424|tpg|DAA40995.1| TPA: hypothetical protein ZEAMMB73_114709 [Zea mays]
Length = 472
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 24/106 (22%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T+FV G + + EE+LRQ F+ +G+I V + V K C GF
Sbjct: 321 TVFVGGLDSNVDEEYLRQIFTPYGEISYVKIPVGK-------------------HC--GF 359
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARR-QLKVAPINDAAS 249
V F S +++AI +NG+ + G K ++S R Q + A +DA S
Sbjct: 360 VQFTSRSCAEEAIQMLNGSQIGGQKARLSWGRSTQNRQASQHDANS 405
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 26/99 (26%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR-- 202
++++ G + +E LR+ FS +G+I SV K +T+ C +
Sbjct: 191 NVYIKNFGDDMDDERLREVFSTYGRILSV--------------------KVMTNSCGKSR 230
Query: 203 --GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
GFV+FDS E++ KA+ E+NG V G + V A++++
Sbjct: 231 GFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKV 269
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 30/136 (22%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R+ K+ Y + + R+ ++ +G N ++V+ ++++ L+Q+F
Sbjct: 271 LYVCRAQKKNERSAELKRRYEQQKVERM---QRYQGVN-LYVKNLDDTVNDDILKQNFEA 326
Query: 167 FGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPESSDKAITEVNG 222
+GKI +S K + DD R GFV F+ P+ + KA+TE+NG
Sbjct: 327 YGKI--------------------TSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNG 366
Query: 223 THVQGVKLKVSLARRQ 238
+ L V+LA+R+
Sbjct: 367 KMMCTKPLYVALAQRK 382
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 22/89 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ +E L + F FGKI S ++ V+ K +GF GFV F++PE
Sbjct: 210 LDKEALEKLFFKFGKITSAAVMVDADGKSKGF-------------------GFVAFENPE 250
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
++KA+TE++ + G + K+ + R Q K
Sbjct: 251 DAEKAVTEMHEYELPGTERKLYVCRAQKK 279
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 20/116 (17%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G IF++ I + + FS+FG I S + ++D+
Sbjct: 98 PSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV---------------ANDEE 142
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASST 251
+ GFV F++ ES+ KAI +VNG ++G KV + + Q ++A + + +T
Sbjct: 143 LNSK-GYGFVHFETEESAQKAIEKVNGMLLEGK--KVYVGKFQPRMARLREMGETT 195
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 346 ATKAVTEMNGRILGTKPLYVALAQRK 371
>gi|226293588|gb|EEH49008.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 591
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L FS FGK+ V ++ +KG G+V F PE +AI
Sbjct: 449 GVTEELLASGFSTFGKVIRVEIDKKKGFGYVDFAEPEGLSRAI 491
>gi|363743697|ref|XP_423569.3| PREDICTED: CUGBP Elav-like family member 5 [Gallus gallus]
Length = 404
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 27/158 (17%)
Query: 86 SAYQPFSAIQPEDSEPVDSKPKFLKVSKRET---NDDRTPVDKKVYGESLLTRLAPNEKP 142
+ + P+SA P +E + P F V + TP+ + + + + E P
Sbjct: 259 NGFVPYSAQSPSVAETL--HPAFSGVQQYAAVYPTTSITPIAQSIPQPPPVLQQQQREGP 316
Query: 143 KGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
+G N + +EF L Q F FG I S + + D+A
Sbjct: 317 EGCNLFIYH---LPQEFGDNELMQMFLPFGNIISSKVFM---------------DRATNQ 358
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 359 SKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKR 396
>gi|326489549|dbj|BAK01755.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 453
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N I +EF L F FG++ S + V+K G
Sbjct: 361 EGPPGANLFIYH---IPQEFGDQELSDAFQRFGRVISAKVFVDKATG------------- 404
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ C GFV++D+P S+ AI +NG + G KLKV L R
Sbjct: 405 -SSKCF-GFVSYDNPVSAQSAIAMMNGFQLGGKKLKVQLKR 443
>gi|254566735|ref|XP_002490478.1| Subunit of cleavage factor I [Komagataella pastoris GS115]
gi|238030274|emb|CAY68197.1| Subunit of cleavage factor I [Komagataella pastoris GS115]
gi|328350869|emb|CCA37269.1| Nuclear polyadenylated RNA-binding protein 4 [Komagataella pastoris
CBS 7435]
Length = 462
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 135 RLAPNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK------GRGFVTF 186
R P E+ IFV G A ++EE +FS FG I + ++K G GFVT+
Sbjct: 226 RAIPREEQDKTGKIFVGGIAAEVTEEDFTDYFSQFGTIIDAQLMIDKDTGRSRGFGFVTY 285
Query: 187 DSPESSDKAITDDCARGFV 205
DSP++ D+ CA +V
Sbjct: 286 DSPDAVDRV----CANKYV 300
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 17/84 (20%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I +E LR+ F+ +G I S V D P+S GFV F SPE +
Sbjct: 305 IDDERLRKEFAPYGTITSAK---------VMTDGPQSR--------GFGFVCFSSPEEAT 347
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
KA+TE+NG V L V+LA+R+
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRR 371
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 24/99 (24%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCA 201
I+++ G ++E L++ F+ FG+ SV M+ E+GR GF
Sbjct: 192 NIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGF------------------ 233
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV F E + KA+ E+NG + G + V A+++L+
Sbjct: 234 -GFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLE 271
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I +E LR+ FS +G I S K ++DD A GFV F SP
Sbjct: 305 IDDERLRKEFSRYGTITSA--------------------KVMSDDKANSKGFGFVCFSSP 344
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
E + KA+TE+NG + L V+LA+R+
Sbjct: 345 EEATKAVTEMNGRILVAKPLYVALAQRK 372
>gi|395841399|ref|XP_003793527.1| PREDICTED: LOW QUALITY PROTEIN: nucleolysin TIA-1 isoform p40,
partial [Otolemur garnettii]
Length = 480
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 24/101 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 309 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 362
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL-KVAPI 244
VNGT ++G +K + L V P+
Sbjct: 363 ---------------VNGTTIEGHVVKCYWGKETLDMVNPV 388
>gi|194220644|ref|XP_001917255.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Equus caballus]
Length = 300
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 155 ISEEFLRQHFSIFGKICS------VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFD 208
I+ E ++ F+ FG+I ++ KG GFV+F +K I D FV F+
Sbjct: 117 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF-----FNKWIFPDKGYSFVRFN 171
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
S ES+ AI VNGT ++G +K + L +
Sbjct: 172 SHESAAHAIVSVNGTTIEGHVVKCYWGKETLDM 204
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 26/100 (26%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G ++V+ + +E LR+ F FG I S K +TD R
Sbjct: 294 GVNLYVKNLDDALDDERLRKEFGPFGNITSA--------------------KVMTDANGR 333
Query: 203 ----GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 334 SKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRK 373
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 191 SSDKAITDDCAR----GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+S K +TDD + GFV+F+ P+S+++A+ E+NG + G L V A+++
Sbjct: 219 TSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQKK 270
>gi|388583170|gb|EIM23472.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 372
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 25/106 (23%)
Query: 145 GNTIFV--QGAGISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPESSDKAITD 198
GN + V G+ ++ L +H S GK+ V + ++ + RGF
Sbjct: 69 GNIVHVSHMHVGVDDQLLTEHMSSSGKVLKVVIMLDPHTRESRGF--------------- 113
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPI 244
GFVTF+ P+ +D AI +++ + + G + V+ ARRQ P
Sbjct: 114 ----GFVTFEQPQEADDAIEKLHLSQILGKTITVARARRQRPREPT 155
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 28/123 (22%)
Query: 124 DKKVYGESLLT---RLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSM--- 175
DK++Y + R+ P+ K N ++V+ GI+EE L++ FS FGKI SV++
Sbjct: 168 DKQIYVGKFVKKSDRVLPSPDAKYTN-LYVKNLDPGITEELLQEKFSEFGKIVSVAIARD 226
Query: 176 EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
E RGF GFV F++P+ + A+ +NGT + L V A
Sbjct: 227 ECGSSRGF-------------------GFVNFENPDDARWAMERMNGTELGSKVLYVGRA 267
Query: 236 RRQ 238
+++
Sbjct: 268 QKR 270
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 28/147 (19%)
Query: 97 EDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG-- 154
E+ D K + L V + + +R KK Y L +L EK +G N +FV+
Sbjct: 281 EELNETDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKL---EKYQGVN-LFVKNLDDT 336
Query: 155 ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I ++ L + F+ +G I SV + E K +GF GFV F +PE
Sbjct: 337 IDDQKLEEEFAPYGTITSVKVMRSENGKSKGF-------------------GFVCFSTPE 377
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KAITE N V G L V++A+R+
Sbjct: 378 EATKAITEKNQQIVAGKPLYVAIAQRK 404
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 138 PNEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESS 192
P+ + KG IF++ I + L FS+FG I S + E RGF
Sbjct: 122 PSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSRGF--------- 172
Query: 193 DKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
GFV F+ E++ +AI +NG + G ++ V+
Sbjct: 173 ----------GFVHFEDDEAAKEAIDAINGMLLNGQEVYVA 203
>gi|225680260|gb|EEH18544.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 612
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L FS FGK+ V ++ +KG G+V F PE +AI
Sbjct: 449 GVTEELLASGFSTFGKVIRVEIDKKKGFGYVDFAEPEGLSRAI 491
>gi|297834824|ref|XP_002885294.1| RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata]
gi|297331134|gb|EFH61553.1| RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata]
Length = 435
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G A +++E LRQ FS FG++ SV + V KG GFV F +S++ AI
Sbjct: 322 TIFVGGIDADVTDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFAERKSAEDAI 373
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +R KK Y L +LA + G +FV+ I E L + F
Sbjct: 303 IYVGRAQKKRERLEELKKQYEAVRLEKLAKYQ----GVNLFVKNLDDTIDSEKLEEEFKP 358
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F +PE + KAITE+N
Sbjct: 359 FGTITSAKVMVDEAGKSKGF-------------------GFVCFTTPEEATKAITEMNTR 399
Query: 224 HVQGVKLKVSLARRQ 238
+ G L V+LA+R+
Sbjct: 400 MINGKPLYVALAQRK 414
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 22/86 (25%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
SEE + FS FGKI S+ +E + K +GF GFV F+ ES
Sbjct: 245 SEESFEKLFSPFGKITSIYLEKDQDGKSKGF-------------------GFVNFEDHES 285
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+N + G K+ V A+++
Sbjct: 286 AVKAVEELNDKEINGQKIYVGRAQKK 311
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|350582294|ref|XP_003481239.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Sus scrofa]
Length = 220
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 49 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 102
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 103 ---------------VNGTTIEGHVVKCYWGKETLDM 124
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 28/141 (19%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFL 160
+ K K L V + + +R +K Y + L ++ K +G N +F++ + +E L
Sbjct: 311 EYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKM---NKYQGVN-LFIKNLQDEVDDERL 366
Query: 161 RQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
+ FS FG I S + E K +GF GFV + +PE ++KA+
Sbjct: 367 KAEFSAFGTITSAKIMTDEQGKSKGF-------------------GFVCYTTPEEANKAV 407
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
TE+N + G L V+LA+R+
Sbjct: 408 TEMNQRMLAGKPLYVALAQRK 428
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G +F++ I + L FS FGKI S + V++
Sbjct: 146 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE---------------- 189
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS--LARRQ 238
+ + GFV FDS ES++ AI VNG + K+ V ++RR+
Sbjct: 190 LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 234
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|426223384|ref|XP_004005855.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Ovis aries]
Length = 375
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 257
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 258 ---------------VNGTTIEGHVVKCYWGKETLDM 279
>gi|348515473|ref|XP_003445264.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Oreochromis niloticus]
Length = 391
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGI--SEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G +E+ L Q+FS +G+I V + E K RGF
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFA----------------- 52
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FVTF+SP + A E+NG + G +KV A
Sbjct: 53 --FVTFESPADAKDAAREMNGKSLDGKPIKVEQA 84
>gi|145306686|gb|ABP57107.1| CUG-BP and ETR-3-like factor 5 [Gallus gallus]
Length = 371
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 27/158 (17%)
Query: 86 SAYQPFSAIQPEDSEPVDSKPKFLKVSKRET---NDDRTPVDKKVYGESLLTRLAPNEKP 142
+ + P+SA P +E + P F V + TP+ + + + + E P
Sbjct: 226 NGFVPYSAQSPSVAETL--HPAFSGVQQYAAVYPTTSITPIAQSIPQPPPVLQQQQREGP 283
Query: 143 KGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
+G N + +EF L Q F FG I S + + D+A
Sbjct: 284 EGCNLFIYH---LPQEFGDNELMQMFLPFGNIISSKVFM---------------DRATNQ 325
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 326 SKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKR 363
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|47224440|emb|CAG08690.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 21/128 (16%)
Query: 127 VYGESLLTRLAPN---EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEK 179
+YG+SLL + E P+G N + +EF L Q F FG + S + ++K
Sbjct: 383 LYGQSLLQQSVAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNMVSAKVFIDK 439
Query: 180 GRGF---------VTFDSPESSDKAITDD--CARGFVTFDSPESSDKAITEVNGTHVQGV 228
+ +P+ S C+ GFV++D+P S+ AI +NG +
Sbjct: 440 QTNLSKCFGECVLCSASAPQRSLLRRLKRLSCSSGFVSYDNPVSAQAAIQAMNGFQIGMK 499
Query: 229 KLKVSLAR 236
+LKV L R
Sbjct: 500 RLKVQLKR 507
>gi|348566571|ref|XP_003469075.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Cavia porcellus]
Length = 388
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 21/99 (21%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPE---------------SSDKAITDD 199
I +E LRQ FS +G I S + + + DSP+ ++DK
Sbjct: 347 IDDERLRQEFSPYGTITSAKVMRD------SLDSPKEKDGEESKVGEPEEKATDKKQGKS 400
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F +P+ + KA+ E+N V G L V+LA+R+
Sbjct: 401 KGFGFVCFSNPDEASKAVAEMNQRMVNGKPLYVALAQRK 439
>gi|37681959|gb|AAQ97857.1| TIA1 cytotoxic granule-associated RNA binding protein [Danio rerio]
gi|160773363|gb|AAI55270.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G+S++ +RQ FS FG+I + + EKG F
Sbjct: 207 TVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSF--------------------- 245
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V FDS E + AI VNGT ++G +K +
Sbjct: 246 VRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGK 277
>gi|390359786|ref|XP_003729564.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like
[Strongylocentrotus purpuratus]
Length = 220
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 157 EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
E + + F FGKI V++ K ES D GF+TFD+ E ++ A
Sbjct: 29 EGRMEKLFETFGKISQVNLMKNK----------ESGDSR-----GFGFITFDTAEDANDA 73
Query: 217 ITEVNGTHVQGVKLKVSLARRQL 239
I +NG V+GV+LKV A + L
Sbjct: 74 IQGMNGKDVEGVQLKVDAALKSL 96
>gi|349805265|gb|AEQ18105.1| putative rd rna binding protein [Hymenochirus curtipes]
Length = 119
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 7/60 (11%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAA-SSTTWSAIA 257
+CA FVTF+S ES+D A+ E+N ++ + +KVS+AR+Q P+ +AA + W ++A
Sbjct: 66 NCA--FVTFESIESADLAVDELNNKTIEDIPIKVSIARKQ----PMLEAALGKSVWGSLA 119
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|332226897|ref|XP_003262629.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Nomascus leucogenys]
Length = 411
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 240 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 293
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 294 ---------------VNGTTIEGHVVKCYWGKETLDM 315
>gi|327355537|gb|EGE84394.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 571
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L FS FGK+ V ++ +KG G+V F P+ KAI
Sbjct: 447 GVTEELLASGFSTFGKVVKVEIDKKKGFGYVDFAEPDGLAKAI 489
>gi|116284263|gb|AAI24193.1| Zgc:55809 protein [Danio rerio]
Length = 284
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 157 EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI-----TDDCARGFVTFDSPE 211
E+ + + F +GKI V +++ G GFV FD P +D A+ D C + + F
Sbjct: 15 EKDVERFFKGYGKILEV--DLKNGYGFVEFDDPRDADDAVYDLNGKDLCGKRVIEFRQYS 72
Query: 212 SSDKAITEVNGTHVQGVKLKV 232
+A+ +++GT V G K+++
Sbjct: 73 DMKRALEKLDGTEVNGRKIRL 93
>gi|41055734|ref|NP_956476.1| TIA1 cytotoxic granule-associated RNA binding protein 1 [Danio
rerio]
gi|28277744|gb|AAH45485.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
gi|44890544|gb|AAH66734.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G+S++ +RQ FS FG+I + + EKG F
Sbjct: 207 TVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSF--------------------- 245
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V FDS E + AI VNGT ++G +K +
Sbjct: 246 VRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGK 277
>gi|68075463|ref|XP_679650.1| RNA-binding protein [Plasmodium berghei strain ANKA]
gi|56500445|emb|CAH93543.1| RNA-binding protein, putative [Plasmodium berghei]
Length = 287
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 142 PKGGNT-IFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
P G N +F + ++ L QHF FG + S ++ + +
Sbjct: 149 PPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQ-----------------RDANGNK 191
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSA--IAC 258
GFV+F++PES+ AI ++G +V G LKV L + + +N A A
Sbjct: 192 GYGFVSFNNPESALNAIKGMHGFYVSGKHLKVQLKKGEEHYIQLNSPAQPQLTPAQPYTV 251
Query: 259 HQSLKGNH 266
Q + GNH
Sbjct: 252 QQPIMGNH 259
>gi|239612565|gb|EEQ89552.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
ER-3]
Length = 571
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L FS FGK+ V ++ +KG G+V F P+ KAI
Sbjct: 447 GVTEELLASGFSTFGKVVKVEIDKKKGFGYVDFAEPDGLAKAI 489
>gi|167382576|ref|XP_001736171.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901525|gb|EDR27604.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 697
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 28/120 (23%)
Query: 157 EEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
E+ L+Q F FG I C V +P+ + GF+ F++ + +
Sbjct: 15 EKILKQQFEKFGGITDCKV------------MRTPQGVSRKF------GFIGFENEDQAQ 56
Query: 215 KAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVI 274
AIT++NG ++Q KL+VSLA+ I D WS + S N DK+ ++I
Sbjct: 57 TAITKMNGAYIQSSKLQVSLAK------AIGDQTIERPWSKYSVGSSSFSN--DKKRKII 108
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|355724189|gb|AES08142.1| TIA1 cytotoxic granule-associated RNA binding protein [Mustela
putorius furo]
Length = 261
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 91 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 144
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 145 ---------------VNGTTIEGHVVKCYWGKETLDM 166
>gi|261203062|ref|XP_002628745.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
SLH14081]
gi|239590842|gb|EEQ73423.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
SLH14081]
Length = 571
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L FS FGK+ V ++ +KG G+V F P+ KAI
Sbjct: 447 GVTEELLASGFSTFGKVVKVEIDKKKGFGYVDFAEPDGLAKAI 489
>gi|426223382|ref|XP_004005854.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Ovis aries]
gi|440907815|gb|ELR57912.1| Nucleolysin TIA-1 isoform p40 [Bos grunniens mutus]
Length = 386
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|395731713|ref|XP_002811971.2| PREDICTED: LOW QUALITY PROTEIN: nucleolysin TIA-1 isoform p40
[Pongo abelii]
Length = 386
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 308 IDNERLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 348
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 349 ATKAVTEMNGCILGTKPLYVALAQRK 374
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 24/99 (24%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDD 199
G+ I+V+ +S+E LR HFS G I S M +KG +GF
Sbjct: 293 GSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGF---------------- 336
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F +PE ++KA+ +G G L V+LA+R+
Sbjct: 337 ---GFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRK 372
>gi|735966|emb|CAA56649.1| surface antigen [Entamoeba histolytica]
Length = 294
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 28/120 (23%)
Query: 157 EEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
E+ L+Q F FG I C V +P+ + GF+ F++ + +
Sbjct: 15 EKILKQQFEKFGGITDCKV------------MRTPQGVSRKF------GFIGFENEDQAQ 56
Query: 215 KAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVI 274
AIT++NG ++Q KL+VSLA+ I D WS + S N DK+ ++I
Sbjct: 57 TAITKMNGAYIQSSKLQVSLAK------AIGDQTIERPWSKYSVGSSSFSN--DKKRKII 108
>gi|301758210|ref|XP_002914948.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2 [Ailuropoda
melanoleuca]
gi|410954993|ref|XP_003984143.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Felis catus]
Length = 375
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 257
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 258 ---------------VNGTTIEGHVVKCYWGKETLDM 279
>gi|426335862|ref|XP_004029425.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Gorilla gorilla gorilla]
Length = 353
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 182 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 235
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 236 ---------------VNGTTIEGHVVKCYWGKETLDM 257
>gi|296223620|ref|XP_002757701.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Callithrix
jacchus]
gi|403260488|ref|XP_003922703.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 375
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 257
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 258 ---------------VNGTTIEGHVVKCYWGKETLDM 279
>gi|380816028|gb|AFE79888.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
gi|383421175|gb|AFH33801.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
Length = 375
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 257
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 258 ---------------VNGTTIEGHVVKCYWGKETLDM 279
>gi|73969892|ref|XP_866571.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 9 [Canis lupus
familiaris]
gi|301758208|ref|XP_002914947.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1 [Ailuropoda
melanoleuca]
gi|410954995|ref|XP_003984144.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Felis catus]
gi|431912606|gb|ELK14624.1| Nucleolysin TIA-1 isoform p40 [Pteropus alecto]
Length = 386
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|70935538|ref|XP_738840.1| RNA-binding protein [Plasmodium chabaudi chabaudi]
gi|56515377|emb|CAH80378.1| RNA-binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 135
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Query: 160 LRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218
L QHF FG + S ++ + GR + GFV+F++PES+ AI
Sbjct: 15 LYQHFQHFGYVVSARIQRDANGR-----------------NKGYGFVSFNNPESALNAIK 57
Query: 219 EVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSA--IACHQSLKGNH 266
++G +V G LKV L + + +N A A Q + GNH
Sbjct: 58 GMHGFYVSGKHLKVQLKKGEEHYIQLNSPAQPQLTPAQPYTVQQPIMGNH 107
>gi|62088002|dbj|BAD92448.1| TIA1 protein variant [Homo sapiens]
Length = 464
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 294 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 347
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 348 ---------------VNGTTIEGHVVKCYWGKETLDM 369
>gi|344283909|ref|XP_003413713.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Loxodonta
africana]
Length = 375
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 257
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 258 ---------------VNGTTIEGHVVKCYWGKETLDM 279
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I +E LR+ F+ +G I S V DS + K GFV F SPE +
Sbjct: 307 IDDERLRREFAPYGTITSAK---------VMMDSTGARSKGF------GFVCFSSPEEAT 351
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
KA+TE+NG + L V+LA+R+
Sbjct: 352 KAVTEMNGRIIVQKPLYVALAQRK 375
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E LR+ FS FG I S + +E GR GF GFV F S +
Sbjct: 339 INDEHLRKEFSPFGTITSAKVMMENGRSKGF-------------------GFVCFSSSKD 379
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA E+NG V L VSLA+R+
Sbjct: 380 AAKASREMNGKLVASKPLYVSLAQRK 405
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 189 PESSDKAITDDCAR----GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
P S K +TDDC R GFV+F S E + A+ ++NG + G ++ V A+++
Sbjct: 250 PTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKK 303
>gi|188219593|ref|NP_071320.2| nucleolysin TIA-1 isoform p40 isoform 1 [Homo sapiens]
gi|114577932|ref|XP_001141475.1| PREDICTED: uncharacterized protein LOC459303 isoform 1 [Pan
troglodytes]
gi|397521826|ref|XP_003830987.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Pan paniscus]
gi|119620229|gb|EAW99823.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_a [Homo sapiens]
gi|410254976|gb|JAA15455.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298558|gb|JAA27879.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353837|gb|JAA43522.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 375
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 257
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 258 ---------------VNGTTIEGHVVKCYWGKETLDM 279
>gi|58266538|ref|XP_570425.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134111146|ref|XP_775715.1| hypothetical protein CNBD4440 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258379|gb|EAL21068.1| hypothetical protein CNBD4440 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226658|gb|AAW43118.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 253
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 25/99 (25%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEV----EKGRGFVTFDSPESSDKAITD 198
GN + V G ++E L FS GK+ V + V ++ RGF
Sbjct: 69 GNNLHVSGLSRAVTERQLEDLFSQIGKVAKVQIMVDPHSQESRGF--------------- 113
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
GFV +SPE + AI +++G +V+G + V+ ARR
Sbjct: 114 ----GFVMMESPEEAQAAIDQLSGQNVEGKSITVAHARR 148
>gi|115497910|ref|NP_001069577.1| nucleolysin TIA-1 isoform p40 [Bos taurus]
gi|111308630|gb|AAI20428.1| TIA1 cytotoxic granule-associated RNA binding protein [Bos taurus]
gi|296482421|tpg|DAA24536.1| TPA: TIA1 cytotoxic granule-associated RNA binding protein [Bos
taurus]
Length = 384
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|410298560|gb|JAA27880.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 388
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 217 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 270
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 271 ---------------VNGTTIEGHVVKCYWGKETLDM 292
>gi|302499969|ref|XP_003011979.1| nonsense-mediated mRNA decay protein Upf3, putative [Arthroderma
benhamiae CBS 112371]
gi|291175534|gb|EFE31339.1| nonsense-mediated mRNA decay protein Upf3, putative [Arthroderma
benhamiae CBS 112371]
Length = 604
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 145 GNTIFVQGA----GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G F++ A G++E+ L++ FS FGK+ V ++ +KG G+V F P S KAI
Sbjct: 439 GTQAFLKHANPSQGVTEDLLQKGFSQFGKVIRVEIDKKKGFGYVDFAEPASLRKAI 494
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQ-GAGISEEFLRQHFSIF 167
+ VS+ ++ +R K+ Y + + RL +G N I+ E LR +FS F
Sbjct: 260 ISVSRAQSKVERQAELKRAYEANRIERL---RNARGTNLYITNLNPAINNERLRAYFSKF 316
Query: 168 GKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQG 227
G+I SV + ++ A+ + GFV F P+ + AI E++ ++G
Sbjct: 317 GEITSVRIMLD----------------AVGNSKGFGFVCFRDPDHASNAIAEMHNRPIEG 360
Query: 228 VKLKVSLARRQ 238
L+V++A ++
Sbjct: 361 NVLQVAIAHKK 371
>gi|188219591|ref|NP_071505.2| nucleolysin TIA-1 isoform p40 isoform 2 [Homo sapiens]
gi|114577930|ref|XP_001141557.1| PREDICTED: uncharacterized protein LOC459303 isoform 2 [Pan
troglodytes]
gi|397521824|ref|XP_003830986.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Pan paniscus]
gi|206729905|sp|P31483.3|TIA1_HUMAN RecName: Full=Nucleolysin TIA-1 isoform p40; AltName:
Full=RNA-binding protein TIA-1; AltName:
Full=T-cell-restricted intracellular antigen-1;
Short=TIA-1; AltName: Full=p40-TIA-1
gi|62702267|gb|AAX93193.1| unknown [Homo sapiens]
gi|119620230|gb|EAW99824.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_b [Homo sapiens]
gi|261861076|dbj|BAI47060.1| TIA1 cytotoxic granule-associated RNA binding protein [synthetic
construct]
gi|410226260|gb|JAA10349.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410254978|gb|JAA15456.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298556|gb|JAA27878.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353839|gb|JAA43523.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 386
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|344283907|ref|XP_003413712.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Loxodonta
africana]
Length = 386
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|84579137|dbj|BAE73002.1| hypothetical protein [Macaca fascicularis]
Length = 385
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|387762942|ref|NP_001248687.1| TIA1 cytotoxic granule-associated RNA binding protein [Macaca
mulatta]
gi|84579193|dbj|BAE73030.1| hypothetical protein [Macaca fascicularis]
gi|355565763|gb|EHH22192.1| hypothetical protein EGK_05415 [Macaca mulatta]
gi|355751389|gb|EHH55644.1| hypothetical protein EGM_04890 [Macaca fascicularis]
gi|380816026|gb|AFE79887.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
gi|383421173|gb|AFH33800.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
gi|384949108|gb|AFI38159.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
Length = 386
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEV-EKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+++E LR HF+ FG I S + V E GR GF GFV F+ PE
Sbjct: 349 LTDEGLRAHFASFGTITSAKVMVDENGRSKGF-------------------GFVCFEKPE 389
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+N + L V+LA+R+
Sbjct: 390 EATAAVTEMNSKMMGSKPLYVALAQRK 416
>gi|351714346|gb|EHB17265.1| Nucleolysin TIA-1 isoform p40 [Heterocephalus glaber]
Length = 386
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ EE L+ FS FG I S + E +GF GFV F SPE
Sbjct: 309 LGEEKLKSEFSKFGSITSAKIMTDEFGHSKGF-------------------GFVCFSSPE 349
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 350 EATKAVTEMNGRIVVSKPLYVALAQRK 376
>gi|390474361|ref|XP_003734771.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Callithrix jacchus]
gi|403260486|ref|XP_003922702.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 386
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEV-EKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
++++ LR+HF+ FG I S + V E GR GF GFV F+ PE
Sbjct: 352 MTDDGLREHFANFGSITSAKVMVDENGRSKGF-------------------GFVCFEKPE 392
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+N + L V+LA+R+
Sbjct: 393 EATAAVTEMNSKMIGAKPLYVALAQRK 419
>gi|291386623|ref|XP_002709696.1| PREDICTED: TIA1 cytotoxic granule-associated RNA binding
protein-like [Oryctolagus cuniculus]
Length = 386
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|294884880|gb|ADF47448.1| TIA1-like protein, partial [Dugesia japonica]
Length = 284
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 136 LAPNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSD 193
L E P +++ G G++EE +R HF FG+I +V + EK F+ F + ES+
Sbjct: 201 LVYKEAPLTNTNVYIAGIPEGLTEELIRVHFEEFGRIDAVKVYPEKAHAFINFVTHESAA 260
Query: 194 KAIT 197
+AI+
Sbjct: 261 RAIS 264
>gi|281346697|gb|EFB22281.1| hypothetical protein PANDA_002889 [Ailuropoda melanoleuca]
Length = 377
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 206 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 259
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 260 ---------------VNGTTIEGHVVKCYWGKETLDM 281
>gi|108744011|gb|ABG02278.1| heterogeneous nuclear ribonucleoprotein G [Haplochromis burtoni]
Length = 391
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGI--SEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G +E+ L Q+FS +G+I V + E K RGF
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFA----------------- 52
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FVTF+SP + A E+NG + G +KV A
Sbjct: 53 --FVTFESPADAKDAAREMNGKSLDGKPIKVEQA 84
>gi|260828873|ref|XP_002609387.1| hypothetical protein BRAFLDRAFT_86478 [Branchiostoma floridae]
gi|229294743|gb|EEN65397.1| hypothetical protein BRAFLDRAFT_86478 [Branchiostoma floridae]
Length = 424
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 35/193 (18%)
Query: 30 LKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQ 89
++ P+ A++A E A+KL+K+GAI V+ + GFKR R + ++L + V +Q
Sbjct: 29 IEAPVNAEEATERAKKLIKAGAIK--VKTDNK--DTGFKRIRKM-KELEKPSEKPVQ-FQ 82
Query: 90 PFSAIQPEDSEPVDSKPKFLKVSKRETNDDRTPVDKKV-YGESLLTRLAPNEKPKGGNTI 148
PFSA PE +P + P + PV+ V E+LL + GN +
Sbjct: 83 PFSAAHPESEDPASTIP-----------ETVLPVEPGVIITEALLAIV--------GNLL 123
Query: 149 FVQGAGISEEFLRQHFSIFGKICSVSM---EVEKGRGF-VTFDSPESSDKAITDDCARGF 204
V +G RQ F G+I +SM ++ G F V+ D E+ D A+
Sbjct: 124 VVLSSG-----WRQTFPPAGRIFVLSMACSDLLLGVSFAVSIDPAEAGRWIYADHWAKVI 178
Query: 205 VTFDSPESSDKAI 217
T + + AI
Sbjct: 179 ATAECSFHTLTAI 191
>gi|344250807|gb|EGW06911.1| Nucleolysin TIA-1 [Cricetulus griseus]
Length = 387
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG F+ F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQILEIRVFPDKGYSFIRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|126304035|ref|XP_001381740.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Monodelphis domestica]
Length = 409
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 23/95 (24%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 229 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 282
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
VNGT ++G +K + L
Sbjct: 283 ---------------VNGTTIEGHVVKCYWGKETL 302
>gi|294886537|ref|XP_002771747.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
gi|239875509|gb|EER03563.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
Length = 422
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 137 APNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDK 194
AP K G +FV +E+ LR HFS FG I S + V+K G
Sbjct: 315 APQTKGPPGANVFVFSVPDAWTEDDLRDHFSSFGNIVSAKVVVDKHTGL----------- 363
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNG-THVQGVKLKVSL 234
GF+++D+ +S+ +A+ E+NG G ++KV +
Sbjct: 364 ----SRGYGFISYDNAQSAGRAVAEMNGFVAANGRRIKVQI 400
>gi|432875366|ref|XP_004072806.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
T++ G +G++E+ +RQ FS FG+I V + +KG FV F+S ES+ AI
Sbjct: 204 TVYCGGVSSGLTEQLMRQTFSAFGQIMEVRVFPDKGYSFVRFNSHESAAHAIV 256
>gi|297846966|ref|XP_002891364.1| ATRBP47C [Arabidopsis lyrata subsp. lyrata]
gi|297337206|gb|EFH67623.1| ATRBP47C [Arabidopsis lyrata subsp. lyrata]
Length = 443
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 23/99 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
TIFV G + ++++ LRQ FS FG+I SV + V KG C GF
Sbjct: 313 TIFVGGLDSSVTDDDLRQPFSEFGEIVSVKIPVGKG-------------------C--GF 351
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAP 243
V F + S+++A+ ++NGT + +++S R Q P
Sbjct: 352 VQFVNRPSAEEALEKLNGTVIGKQTVRLSWGRNQANKQP 390
>gi|402891170|ref|XP_003908827.1| PREDICTED: nucleolysin TIA-1 isoform p40, partial [Papio anubis]
Length = 377
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 206 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 259
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 260 ---------------VNGTTIEGHVVKCYWGKETLDM 281
>gi|395507384|ref|XP_003758005.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Sarcophilus harrisii]
Length = 394
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 214 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 267
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 268 ---------------VNGTTIEGHVVKCYWGKETLDM 289
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 22/88 (25%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSP 210
G SEE +R+ F +GKI S+ +E + K +GF GFV F+S
Sbjct: 241 GFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGF-------------------GFVNFESH 281
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
E++ KA+ E+N + G KL V A+++
Sbjct: 282 EAAVKAVEELNDKDINGQKLYVGRAQKK 309
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + +R K+ Y + L +L+ + G +FV+ I L + F
Sbjct: 301 LYVGRAQKKRERIEELKRQYEAARLEKLSKYQ----GVNLFVKNLDDSIDSVKLEEEFKP 356
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 357 FGTITSARVMVDEHGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 397
Query: 224 HVQGVKLKVSLARRQ 238
G L V+LA+R+
Sbjct: 398 MFHGKPLYVALAQRK 412
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I +E LR+ FS +G I S M+ +KG +GF GFV F SPE
Sbjct: 308 IDDERLREEFSPYGTISSAKVMKDDKGNSKGF-------------------GFVCFSSPE 348
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L V+LA+R+
Sbjct: 349 EATKAVTEMNGRILISKPLYVALAQRR 375
>gi|302661624|ref|XP_003022478.1| nonsense-mediated mRNA decay protein Upf3, putative [Trichophyton
verrucosum HKI 0517]
gi|291186424|gb|EFE41860.1| nonsense-mediated mRNA decay protein Upf3, putative [Trichophyton
verrucosum HKI 0517]
Length = 659
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 145 GNTIFVQGA----GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G F++ A G++E+ L++ FS FGK+ V ++ +KG G+V F P S KAI
Sbjct: 494 GTQAFLKHANPSQGVTEDLLQKGFSQFGKVIRVEIDKKKGFGYVDFAEPASLRKAI 549
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I +E LR+ FS++G I S K +TDD R GFV F SP
Sbjct: 298 IDDERLRKEFSLYGTITSA--------------------KVMTDDEGRSKGFGFVCFISP 337
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+NG V L V+LA+R+
Sbjct: 338 NEATCAVTELNGRVVGSKPLYVALAQRK 365
>gi|432877559|ref|XP_004073159.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Oryzias latipes]
Length = 386
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGI--SEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G +E+ L Q+FS +G+I V + E K RGF
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFA----------------- 52
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FVTF+SP + A E+NG + G +KV A
Sbjct: 53 --FVTFESPADAKDAAREMNGKSLDGKPIKVEQA 84
>gi|225428741|ref|XP_002285031.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 416
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E LRQ FS FG++ SV + V KG GFV F + S++ A+
Sbjct: 296 TIFVGGLDSEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDAL 347
>gi|168043683|ref|XP_001774313.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674305|gb|EDQ60815.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 414
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 23/108 (21%)
Query: 134 TRLAP-NEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDS 188
T + P E P G N I EF L FS FG + S + V+K G
Sbjct: 317 TSVGPQTEGPAGANLFIYH---IPPEFGDDELSTAFSSFGNVISAKVFVDKTTG------ 367
Query: 189 PESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++D+P+++ AI +NG + G +LKV L R
Sbjct: 368 --------ASKC-FGFVSYDTPDAAQAAINVMNGFQLSGKRLKVQLKR 406
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I +E LRQ F FG I S M EKG +GF GFV F SP+
Sbjct: 343 IDDERLRQEFEPFGSITSAKVMRDEKGTSKGF-------------------GFVCFSSPD 383
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+N + L VSLA+R+
Sbjct: 384 EATKAVAEMNNKMIGSKPLYVSLAQRR 410
>gi|242803385|ref|XP_002484163.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|242803390|ref|XP_002484164.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218717508|gb|EED16929.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218717509|gb|EED16930.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 579
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L FS FGK+ V ++ +KG G+V F ES KAI
Sbjct: 446 GVTEELLDTAFSAFGKVTKVEIDKKKGFGYVDFAQAESLQKAI 488
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFL 160
+ K K L V + + +R +K Y + L ++ K +G N +FV+ I +E L
Sbjct: 314 EYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKI---NKYQGVN-LFVKNLQDEIDDERL 369
Query: 161 RQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
+ FS FG I S + E K +GF GFV + +PE + KAI
Sbjct: 370 KSEFSAFGTITSAKVMTDENNKSKGF-------------------GFVCYSNPEEATKAI 410
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
E+N + G L V+LA+R+
Sbjct: 411 AEMNQRMLAGKPLYVALAQRK 431
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPE 190
P+ + G +F++ I + L FS FGKI S + V+ KG GFV FDS +
Sbjct: 149 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGYGFVHFDSVD 208
Query: 191 SSDKAI 196
S++ AI
Sbjct: 209 SANAAI 214
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI E L++ FS FG I +E G GF
Sbjct: 92 GVNLYVKNLDDGIDEGCLQKEFSPFGTITGAKFMMEGGPSEGF----------------- 134
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 135 --GFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRK 170
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++EE L+Q FS FG + S + +K G GFV + S E ++
Sbjct: 35 LTEEGLKQLFSQFGVVLSCKLIKDKSSGI---------------SLGYGFVNYGSAEEAE 79
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
AI ++NGT ++ LKVS AR
Sbjct: 80 HAIQKMNGTTLESKTLKVSYAR 101
>gi|212539920|ref|XP_002150115.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
marneffei ATCC 18224]
gi|210067414|gb|EEA21506.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
marneffei ATCC 18224]
Length = 570
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L FS FGK+ V ++ +KG G+V F ES KAI
Sbjct: 440 GVTEELLDAAFSAFGKVTKVEIDKKKGFGYVDFAEAESLQKAI 482
>gi|432877561|ref|XP_004073160.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 2
[Oryzias latipes]
Length = 380
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGI--SEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G +E+ L Q+FS +G+I V + E K RGF
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFA----------------- 52
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FVTF+SP + A E+NG + G +KV A
Sbjct: 53 --FVTFESPADAKDAAREMNGKSLDGKPIKVEQA 84
>gi|149036617|gb|EDL91235.1| rCG56007, isoform CRA_a [Rattus norvegicus]
Length = 386
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
G T++ G +G++E+ +RQ FS FG+I + + +KG F+ F S ES+ AI
Sbjct: 212 GNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVS--- 268
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ------------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|168002776|ref|XP_001754089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694643|gb|EDQ80990.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 429
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 142 PKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
P G N I EF L FS FG + S + V+K G
Sbjct: 341 PAGANLFIYH---IPPEFGDQELSTAFSSFGNVISAKVFVDKTTG--------------A 383
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++D+PE++ AI +NG + G +LKV L R
Sbjct: 384 SKC-FGFVSYDTPEAAQAAINVMNGFQLSGKRLKVQLKR 421
>gi|281203518|gb|EFA77718.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 341
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 15/77 (19%)
Query: 160 LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219
L+ F +G + S + + DKA GFVT+D+P+S+ AI +
Sbjct: 277 LKMLFQTYGNVISAKVFI---------------DKATNQSKCFGFVTYDNPQSALNAIND 321
Query: 220 VNGTHVQGVKLKVSLAR 236
+NG ++G KLKV+ +
Sbjct: 322 LNGFAIEGKKLKVNFKK 338
>gi|18412143|ref|NP_567249.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
gi|21536899|gb|AAM61231.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|222423375|dbj|BAH19660.1| AT4G03110 [Arabidopsis thaliana]
gi|332656872|gb|AEE82272.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
Length = 441
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 22/108 (20%)
Query: 133 LTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDS 188
L+ + E P+G N +F+ I EF L F FG + S + V+K G
Sbjct: 337 LSSVVQTEGPEGAN-LFIYN--IPREFGDQELAAAFQSFGIVLSAKVFVDKATG------ 387
Query: 189 PESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DS ++ AI +NG H+ G KLKV L R
Sbjct: 388 --------VSKCF-GFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKR 426
>gi|297741313|emb|CBI32444.3| unnamed protein product [Vitis vinifera]
Length = 342
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E LRQ FS FG++ SV + V KG GFV F + S++ A+
Sbjct: 222 TIFVGGLDSEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDAL 273
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 21/74 (28%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
G+ +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 231 GLDDERLRKEFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 271
Query: 212 SSDKAITEVNGTHV 225
+ KA+TE+NG V
Sbjct: 272 EATKAVTEMNGRIV 285
>gi|260827782|ref|XP_002608843.1| hypothetical protein BRAFLDRAFT_89712 [Branchiostoma floridae]
gi|229294196|gb|EEN64853.1| hypothetical protein BRAFLDRAFT_89712 [Branchiostoma floridae]
Length = 413
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 148 IFVQG--AGISEEFLRQHFSIFG-----KICSVSMEVEKGRGFVTFDSPESSDKAITDD 199
+FV+G SE+ LR FS FG KI + V KG GFVTFDS E++DKA +D
Sbjct: 107 VFVRGFDPDCSEQELRDFFSQFGAVRDTKIIADRAGVSKGYGFVTFDSQEAADKAQQND 165
>gi|452936|gb|AAB28794.1| 60 kda non-pathogenic specific antigen [Entamoeba histolytica, SAW
1734R, Peptide Partial, 273 aa]
Length = 273
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 28/120 (23%)
Query: 157 EEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
E+ L+Q F FG I C V +P+ + GF+ F++ + +
Sbjct: 10 EKILKQQFEKFGGITDCKV------------MRTPQGVSRKF------GFIGFENEDQAQ 51
Query: 215 KAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVI 274
AIT++NG ++Q KL+VSLA+ I D WS + S N DK+ ++I
Sbjct: 52 TAITKMNGAYIQSSKLQVSLAK------AIGDQTIERPWSKYSVGSSSFSN--DKKRKII 103
>gi|82658280|ref|NP_001032500.1| myelin expression factor 2 isoform 1 [Danio rerio]
gi|81294244|gb|AAI08002.1| Myelin expression factor 2 [Danio rerio]
Length = 557
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
++ KGG IFV+ +S + L++ FS G++ +++E G+ +
Sbjct: 474 DRSKGGCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMENGK---------------S 518
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C G V FDSPES++KA +NGT + G ++ V L R
Sbjct: 519 KGC--GTVRFDSPESAEKACRLMNGTKINGREVDVRLDR 555
>gi|326471703|gb|EGD95712.1| hypothetical protein TESG_03181 [Trichophyton tonsurans CBS 112818]
Length = 411
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++E+ L++ FS FGK+ V ++ +KG G+V F P S KAI
Sbjct: 258 GVTEDLLQKGFSQFGKVIRVEIDKKKGFGYVDFAEPASLRKAI 300
>gi|297809825|ref|XP_002872796.1| hypothetical protein ARALYDRAFT_490251 [Arabidopsis lyrata subsp.
lyrata]
gi|297318633|gb|EFH49055.1| hypothetical protein ARALYDRAFT_490251 [Arabidopsis lyrata subsp.
lyrata]
Length = 444
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 22/108 (20%)
Query: 133 LTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDS 188
L+ + E P+G N +F+ I EF L F FG + S + V+K G
Sbjct: 343 LSSVVQTEGPEGAN-LFIYN--IPREFGDQELAAAFQSFGIVLSAKVFVDKATG------ 393
Query: 189 PESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DS ++ AI +NG H+ G KLKV L R
Sbjct: 394 --------VSKCF-GFVSYDSQAAAQNAIDVMNGRHLGGKKLKVQLKR 432
>gi|58865762|ref|NP_001012096.1| TIA1 cytotoxic granule-associated RNA binding protein [Rattus
norvegicus]
gi|56268852|gb|AAH87064.1| TIA1 cytotoxic granule-associated RNA binding protein [Rattus
norvegicus]
gi|149036619|gb|EDL91237.1| rCG56007, isoform CRA_c [Rattus norvegicus]
Length = 375
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
G T++ G +G++E+ +RQ FS FG+I + + +KG F+ F S ES+ AI
Sbjct: 201 GNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVS--- 257
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 258 ------------------VNGTTIEGHVVKCYWGKETLDM 279
>gi|260787638|ref|XP_002588859.1| hypothetical protein BRAFLDRAFT_60030 [Branchiostoma floridae]
gi|229274030|gb|EEN44870.1| hypothetical protein BRAFLDRAFT_60030 [Branchiostoma floridae]
Length = 164
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N + +EF L Q F FG + S + V D+A
Sbjct: 74 EGPEGCNLFIYH---LPQEFGDAELMQMFMPFGNVISAKVFV---------------DRA 115
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 116 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 156
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G+ ++V+ ++++ LR+HF+ FG I S + P +
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKV----------MRDPSGVSRG------S 369
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F +PE + +AITE+NG + L V+LA+R+
Sbjct: 370 GFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
>gi|356552180|ref|XP_003544447.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 425
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G +S+E LRQ FS +G+I SV + V KG GFV F + ++++A+
Sbjct: 296 TIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 347
>gi|410913463|ref|XP_003970208.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Takifugu rubripes]
Length = 391
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGI--SEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G +E+ L Q FS +G+I V + E K RGF
Sbjct: 10 LFIGGLNTETTEKALEQFFSKYGRIAEVLLMKDRETNKSRGFA----------------- 52
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FVTF+SP + A E+NG + G +KV A
Sbjct: 53 --FVTFESPSDAKDAAREMNGKSLDGKNIKVEQA 84
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
+ +E LR+ FS FG I V + E+G RGF G + F SPE
Sbjct: 304 VDDEQLRKEFSSFGSITRVKVMKEEGYSRGF-------------------GLICFSSPEE 344
Query: 213 SDKAITEVNGTHVQGVKLKVSLARR 237
+ KA+TE+NG + L ++LA+R
Sbjct: 345 AAKALTEMNGRVLGSKALSIALAQR 369
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G+ ++V+ ++++ LR+HF+ FG I S + P +
Sbjct: 320 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKV----------MRDPTGVSRG------S 363
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F +PE + +AITE+NG + L V+LA+R+
Sbjct: 364 GFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRK 399
>gi|410913465|ref|XP_003970209.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 2
[Takifugu rubripes]
Length = 383
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGI--SEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G +E+ L Q FS +G+I V + E K RGF
Sbjct: 10 LFIGGLNTETTEKALEQFFSKYGRIAEVLLMKDRETNKSRGFA----------------- 52
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FVTF+SP + A E+NG + G +KV A
Sbjct: 53 --FVTFESPSDAKDAAREMNGKSLDGKNIKVEQA 84
>gi|3924594|gb|AAC79095.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|4262139|gb|AAD14439.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|7270181|emb|CAB77796.1| putative ribonucleoprotein [Arabidopsis thaliana]
Length = 492
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 22/108 (20%)
Query: 133 LTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDS 188
L+ + E P+G N +F+ I EF L F FG + S + V+K G
Sbjct: 337 LSSVVQTEGPEGAN-LFIYN--IPREFGDQELAAAFQSFGIVLSAKVFVDKATG------ 387
Query: 189 PESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GFV++DS ++ AI +NG H+ G KLKV L R
Sbjct: 388 --------VSKCF-GFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKR 426
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G+ I+V+ +S+E LR HFS G I S + + DK I+
Sbjct: 293 GSNIYVKNIDDHVSDEELRDHFSACGIITSAKIMRD--------------DKGISKGF-- 336
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F +PE ++KA+ +G G L V+LA+R+
Sbjct: 337 GFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRK 372
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 16/85 (18%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
GI+++ LR+ FS FGKI S ++ + + V+ S GFV+F + E +
Sbjct: 414 GITDDQLRELFSNFGKITSC--KIMRDQNGVSKGS--------------GFVSFSTREEA 457
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
+A+TE+NG + G L V+ A+R+
Sbjct: 458 SQALTEMNGKMISGKPLYVAFAQRK 482
>gi|6755783|ref|NP_035715.1| nucleolysin TIA-1 isoform 1 [Mus musculus]
gi|1729966|sp|P52912.1|TIA1_MOUSE RecName: Full=Nucleolysin TIA-1; AltName: Full=RNA-binding protein
TIA-1; AltName: Full=T-cell-restricted intracellular
antigen-1; Short=TIA-1
gi|437057|gb|AAA03711.1| TIA [Mus musculus]
gi|1616673|gb|AAC52871.1| RNA binding protein TIA-1 [Mus musculus]
gi|26353510|dbj|BAC40385.1| unnamed protein product [Mus musculus]
gi|74188216|dbj|BAE25782.1| unnamed protein product [Mus musculus]
gi|148666751|gb|EDK99167.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_a
[Mus musculus]
Length = 386
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 16/85 (18%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
GI+++ LR+ FS FGKI S ++ + + V+ S GFV+F + E +
Sbjct: 414 GITDDQLRELFSNFGKITSC--KIMRDQNGVSKGS--------------GFVSFSTREEA 457
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
+A+TE+NG + G L V+ A+R+
Sbjct: 458 SQALTEMNGKMISGKPLYVAFAQRK 482
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 22/88 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG---RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
++E+ LR FS FG I S+ + + RGF GFV FDS +
Sbjct: 302 VTEDALRDKFSKFGTITSLKIMTDNNGDSRGF-------------------GFVNFDSAD 342
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQL 239
+ AI E++G+ + G L V+LA R++
Sbjct: 343 EAAAAIQEMHGSMIDGKPLYVALALRKV 370
>gi|356562301|ref|XP_003549410.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 401
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G +S+E LRQ FS +G+I SV + V KG GFV F + ++++A+
Sbjct: 272 TIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 323
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E L++ FS +G I S V E +GF GFV F SPE
Sbjct: 368 INDERLKEVFSAYGVITSAKVMTESSHSKGF-------------------GFVCFSSPEE 408
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 409 ATKAVTEMNGRIVGTKPLYVALAQRK 434
>gi|224068763|ref|XP_002302819.1| predicted protein [Populus trichocarpa]
gi|222844545|gb|EEE82092.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 22/99 (22%)
Query: 142 PKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
P G N I +EF L F FG++ S + V DKA
Sbjct: 308 PPGANLFIYH---IPQEFGDQELANTFQAFGQVLSAKVFV---------------DKATC 349
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV++DSP ++ AIT +NG + G LKV L +
Sbjct: 350 VSKCFGFVSYDSPAAAQNAITMMNGCQLGGKMLKVQLKK 388
>gi|443691317|gb|ELT93212.1| hypothetical protein CAPTEDRAFT_183838 [Capitella teleta]
Length = 462
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 134 TRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
T A E P+G N + +EF L Q F FG + S + +
Sbjct: 366 TTTAQKEGPEGCNLFIYH---LPQEFGDAELAQMFMPFGNVISAKVYI------------ 410
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 411 ---DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 454
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 23/84 (27%)
Query: 156 SEEFLRQHFSIFGKIC-SVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+++ LRQ FS FG I S+ M E + RGF GFVTF +PE
Sbjct: 15 TDDTLRQAFSEFGAILDSIVMRDRETGRSRGF-------------------GFVTFGTPE 55
Query: 212 SSDKAITEVNGTHVQGVKLKVSLA 235
+D AI +N + G +++V+LA
Sbjct: 56 EADAAINNLNEQELDGRRIRVNLA 79
>gi|148666756|gb|EDK99172.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_f
[Mus musculus]
Length = 375
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F S ES+ AI
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVS------ 257
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 258 ---------------VNGTTIEGHVVKCYWGKETLDM 279
>gi|255760009|ref|NP_001157550.1| nucleolysin TIA-1 isoform 2 [Mus musculus]
gi|28386187|gb|AAH46812.1| Tia1 protein [Mus musculus]
Length = 377
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F S ES+ AI
Sbjct: 206 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVS------ 259
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 260 ---------------VNGTTIEGHVVKCYWGKETLDM 281
>gi|387196968|gb|AFJ68786.1| elav-like protein 2, partial [Nannochloropsis gaditana CCMP526]
Length = 358
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I + LR+ F FG++ S + EKG G GFV + P+S+D
Sbjct: 127 IDDMGLRELFQDFGQVESARVIREKGSG---------------RSLGYGFVKYKDPQSAD 171
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
AI NG V G ++KVS+AR
Sbjct: 172 SAILTRNGHQVYGKRIKVSVAR 193
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 29/141 (20%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFL 160
D +P L VS+ + ++R V K + + + + G ++V+ I+EE L
Sbjct: 325 DVQPNRLYVSRAQKKNERQVVLKSQH-----EAVKESHQRYQGVNLYVKNLADSINEEDL 379
Query: 161 RQHFSIFGKICSVSMEVEKG---RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
R F FG + SVS++ ++ RGF GFV+F SP+ + KAI
Sbjct: 380 RSMFEPFGTVSSVSIKTDESGVSRGF-------------------GFVSFLSPDEATKAI 420
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
TE++ V+G L V L R+
Sbjct: 421 TEMHLKLVRGKPLYVGLHERK 441
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E L++ FS +G I S V E +GF GFV F SPE
Sbjct: 305 INDERLKEVFSTYGVITSAKVMTESSHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E L++ FS +G I S V E +GF GFV F SPE
Sbjct: 305 INDERLKEVFSTYGVITSAKVMTESSHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 28/141 (19%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFL 160
+ K K L V + + +R +K Y + L ++ K +G N +F++ + +E L
Sbjct: 325 EYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKM---NKYQGVN-LFIKNLQDEVDDERL 380
Query: 161 RQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
+ FS FG I S + E K +GF GFV + +PE ++KA+
Sbjct: 381 KAEFSAFGTITSAKIMTDEQGKSKGF-------------------GFVCYTTPEEANKAV 421
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
TE+N + G L V+LA+R+
Sbjct: 422 TEMNQRMLAGKPLYVALAQRK 442
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G +F++ I + L FS FGKI S + V++
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE---------------- 203
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS--LARRQ 238
+ + GFV FDS ES++ AI VNG + K+ V ++RR+
Sbjct: 204 LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 248
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 29/141 (20%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFL 160
D +P L VS+ + ++R V K + + + + G ++V+ I+EE L
Sbjct: 325 DVQPNRLYVSRAQKKNERQVVLKSQH-----EAVKESHQRYQGVNLYVKNLADSINEEDL 379
Query: 161 RQHFSIFGKICSVSMEVEKG---RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
R F FG + SVS++ ++ RGF GFV+F SP+ + KAI
Sbjct: 380 RSMFEPFGTVSSVSIKTDESGVSRGF-------------------GFVSFLSPDEATKAI 420
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
TE++ V+G L V L R+
Sbjct: 421 TEMHLKLVRGKPLYVGLHERK 441
>gi|148666754|gb|EDK99170.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_d
[Mus musculus]
Length = 385
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F S ES+ AI
Sbjct: 214 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVS------ 267
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 268 ---------------VNGTTIEGHVVKCYWGKETLDM 289
>gi|16215606|emb|CAC95018.1| TIA-1 protein [Xenopus laevis]
Length = 388
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G+SE+ +RQ FS FG+I V + +KG FV F S ES+ AI
Sbjct: 215 TVYCGGVTSGLSEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFSSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGK 285
>gi|115313305|gb|AAI24098.1| Myef2 protein [Danio rerio]
gi|197246963|gb|AAI64131.1| Myef2 protein [Danio rerio]
Length = 327
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
++ KGG IFV+ +S + L++ FS G++ +++E G+ +
Sbjct: 244 DRSKGGCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMENGK---------------S 288
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C G V FDSPES++KA +NGT + G ++ V L R
Sbjct: 289 KGC--GTVRFDSPESAEKACRLMNGTKINGREVDVRLDR 325
>gi|294941928|ref|XP_002783310.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
gi|239895725|gb|EER15106.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
Length = 429
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 137 APNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDK 194
AP K G +FV +E+ LR HFS FG I S + V+K G
Sbjct: 322 APQTKGPPGANVFVFWVPDAWTEDDLRDHFSSFGNIVSAKVVVDKHTGL----------- 370
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNG-THVQGVKLKVSL 234
GF+++D+ +S+ +A+ E+NG G ++KV +
Sbjct: 371 ----SRGYGFISYDNAQSAGRAVAEMNGFVAANGRRIKVQI 407
>gi|198468704|ref|XP_001354795.2| GA18065 [Drosophila pseudoobscura pseudoobscura]
gi|198146532|gb|EAL31850.2| GA18065 [Drosophila pseudoobscura pseudoobscura]
Length = 496
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 173 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 230
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 231 QAVNVLNGLRLQNKTIKVSFAR 252
>gi|294884831|gb|ADF47427.1| poly(A) binding protein cytoplasmic-2, partial [Dugesia japonica]
Length = 309
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I + L+Q F +FG I S K +TD R GFV F +P
Sbjct: 11 IDDSRLKQEFVVFGNITSA--------------------KVMTDSNNRSKGFGFVCFSNP 50
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
E + KA+TE+NG L V+LA+R+
Sbjct: 51 EEATKAVTEMNGKICGSKPLYVALAQRK 78
>gi|221483935|gb|EEE22239.1| RNA binding protein, putative [Toxoplasma gondii GT1]
gi|221505217|gb|EEE30871.1| RNA binding protein, putative [Toxoplasma gondii VEG]
Length = 837
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Query: 142 PKGGNT-IFVQGAGISEEFLRQHFSIFGKICSVSMEVEK----GRGFVTFDSPESSDKAI 196
P G N IF SE L HFS++G + S + ++ RGF
Sbjct: 489 PPGANVFIFHIPNEWSEHDLLTHFSVYGPVVSARIASDRLSGRNRGF------------- 535
Query: 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR------RQLKVAPINDAASS 250
GFV+F + +++ A+T +NG V G +LKV + + + L++ P + +
Sbjct: 536 ------GFVSFANGQAAAAAVTAMNGFQVNGKRLKVQIKKGEEQYAQNLRMTPAYNNCND 589
Query: 251 TTW--SAIACHQSLKG 264
+TW +A +C + G
Sbjct: 590 STWLSTAASCSEPRSG 605
>gi|297307145|ref|NP_001167497.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1
[Xenopus laevis]
gi|50416510|gb|AAH77169.1| Unknown (protein for MGC:78766) [Xenopus laevis]
Length = 385
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G+SE+ +RQ FS FG+I V + +KG FV F S ES+ AI
Sbjct: 215 TVYCGGVTSGLSEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFSSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGK 285
>gi|156086340|ref|XP_001610579.1| RNA binding motif containing protein [Babesia bovis T2Bo]
gi|154797832|gb|EDO07011.1| RNA binding motif containing protein [Babesia bovis]
Length = 278
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 26/123 (21%)
Query: 131 SLLTRLAPNEKPKG--GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE---KGRGF 183
SLL + N G G+ +FV S+ L HF FG I S ++++ + RG+
Sbjct: 149 SLLPKRVTNSASYGPPGSNLFVFHLPPEWSDSDLLLHFQSFGTIVSARVQLDTVGRNRGY 208
Query: 184 VTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAP 243
GFV++D+P S+ AI +NG V G LKV L R + ++A
Sbjct: 209 -------------------GFVSYDNPTSALTAIKNMNGYSVCGKYLKVQLKRGEEQMAL 249
Query: 244 IND 246
N+
Sbjct: 250 TNE 252
>gi|26390405|dbj|BAC25892.1| unnamed protein product [Mus musculus]
Length = 358
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F S ES+ AI
Sbjct: 187 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVS------ 240
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 241 ---------------VNGTTIEGHVVKCYWGKETLDM 262
>gi|254566455|ref|XP_002490338.1| RNA binding protein that negatively regulates growth rate
[Komagataella pastoris GS115]
gi|238030134|emb|CAY68057.1| RNA binding protein that negatively regulates growth rate
[Komagataella pastoris GS115]
gi|328350732|emb|CCA37132.1| Uncharacterized RNA-binding protein C23E6.01c [Komagataella
pastoris CBS 7435]
Length = 506
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
+T+FV G AG+SEE L F FG I S+ + KG GFV F + E ++ AI+ G
Sbjct: 278 STVFVGGLAAGVSEETLFTLFEPFGSISSIKIPRGKGCGFVKFSTREEAENAISG--MHG 335
Query: 204 FV 205
F+
Sbjct: 336 FL 337
>gi|47225325|emb|CAG09825.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGI--SEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G +E+ L Q FS +G+I V + E K RGF
Sbjct: 10 LFIGGLNTETTEKALEQFFSKYGRIAEVILMKDRETNKSRGFA----------------- 52
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FVTF+SP + A E+NG + G +KV A
Sbjct: 53 --FVTFESPSDAKDAAREMNGKSLDGKNIKVEQA 84
>gi|269785109|ref|NP_001161510.1| bruno-like protein [Saccoglossus kowalevskii]
gi|268053989|gb|ACY92481.1| bruno-like protein [Saccoglossus kowalevskii]
Length = 485
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 72/213 (33%), Gaps = 47/213 (22%)
Query: 51 AINPIVRPPKRCEQE-GFKRPRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFL 109
A N PP E G P G+ T+ +Y + ++ EPV P L
Sbjct: 285 AANGFSAPPITPTSEIGTGTPGGMNGATPNMLSPTIPSYNMAAQTNGQNGEPV--YPNGL 342
Query: 110 KVSKRETNDDRTPVDKKVYGESLLTRLAPN----------------------EKPKGGNT 147
+N P+ + G PN E P+G N
Sbjct: 343 HQYPAHSNQTGDPLQQAYTGMQQYAATYPNAYGQLTQAFTQQSNVTMPTQQREGPEGCNL 402
Query: 148 IFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
+ +EF L Q F FG + S + V D+A G
Sbjct: 403 FIYH---LPQEFGDAELMQMFMPFGNVISSKVFV---------------DRATNQSKCFG 444
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
FV+FD+P S+ AI +NG + +LKV L R
Sbjct: 445 FVSFDNPASAQGAIQAMNGFQIGMKRLKVQLKR 477
>gi|259155082|ref|NP_001158783.1| Heterogeneous nuclear ribonucleoprotein G [Salmo salar]
gi|223647384|gb|ACN10450.1| Heterogeneous nuclear ribonucleoprotein G [Salmo salar]
Length = 290
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 25/94 (26%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G +E+ L +HFS +G+I V + E K RGF
Sbjct: 10 LFIGGLDTETNEKALEKHFSKYGRIVEVLLMKDRETNKSRGFA----------------- 52
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FVTF+SP + A E+NG + G +KV A
Sbjct: 53 --FVTFESPADAKDAAREMNGKSLDGKPIKVEQA 84
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E L++ FS +G I S V E +GF GFV F SPE
Sbjct: 305 INDERLKEVFSTYGVITSAKVMTESSHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|429864037|gb|ELA38421.1| u1 small nuclear [Colletotrichum gloeosporioides Nara gc5]
Length = 247
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 160 LRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSP 210
L Q FS +G + + + KG+ FV FDSPES+ KAI D +GF FD P
Sbjct: 28 LLQIFSEYGNVLDIVAKSNLRAKGQAFVVFDSPESAQKAIDD--VQGFELFDKP 79
>gi|325183868|emb|CCA18326.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325183943|emb|CCA18401.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 429
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 61/196 (31%)
Query: 52 INPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLKV 111
I+P+ R PK GF R ++ E D+ A+Q + S+P + V
Sbjct: 130 IDPVTRMPK-----GFGFVRFGDKG--EADQ----------ALQTMNGVYCSSRPMRVSV 172
Query: 112 SKRETNDDRT--------PVDKKVYGESLLTRLAPNEKPKGGNT-IFVQGA--GISEEFL 160
+ DRT P+ V G N + +G NT +F+ G +E+ L
Sbjct: 173 AT-----DRTKTRGIMPPPISYTVVGTG-------NTEEEGANTTVFIGGLDPSTTEDDL 220
Query: 161 RQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220
R F + G+I SV +V GRG C GFV + + +++D AI ++
Sbjct: 221 RARFGVIGEIMSV--KVPPGRG-----------------C--GFVQYVTKDAADVAINQM 259
Query: 221 NGTHVQGVKLKVSLAR 236
NG + GVK++ + R
Sbjct: 260 NGALINGVKVRCAWGR 275
>gi|195165322|ref|XP_002023488.1| GL20165 [Drosophila persimilis]
gi|194105593|gb|EDW27636.1| GL20165 [Drosophila persimilis]
Length = 496
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 173 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 230
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 231 QAVNVLNGLRLQNKTIKVSFAR 252
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ F+ +G I S V + + +GF GFV F SPE
Sbjct: 305 IDDERLRKEFAPYGTITSAKVMTDGSQSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRR 371
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 22/92 (23%)
Query: 152 GAGISEEFLRQHFSIFGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFD 208
G ++E L++ FS FG+ SV M+ EKGR GF GFV +
Sbjct: 199 GEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGF-------------------GFVNYA 239
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
E + KA+ E+NG + G L V A+++L+
Sbjct: 240 HHEDAQKAVNEMNGKEINGKILYVGRAQKRLE 271
>gi|315053341|ref|XP_003176044.1| hypothetical protein MGYG_00135 [Arthroderma gypseum CBS 118893]
gi|311337890|gb|EFQ97092.1| hypothetical protein MGYG_00135 [Arthroderma gypseum CBS 118893]
Length = 606
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 111 VSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA----GISEEFLRQHFSI 166
S++ N TP +K ++ + + G F++ A G++E+ L++ FS
Sbjct: 408 ASRKTANTPTTPNNKASGQKTQQQQQSSQSPSSNGTQAFLKHANPSQGVTEDLLQKGFSQ 467
Query: 167 FGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
FGK+ V ++ +KG G+V F P KAI
Sbjct: 468 FGKVIRVEIDKKKGFGYVDFAEPAGLRKAI 497
>gi|291190830|ref|NP_001167315.1| myelin expression factor 2 [Salmo salar]
gi|223649170|gb|ACN11343.1| Myelin expression factor 2 [Salmo salar]
Length = 611
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 19/102 (18%)
Query: 137 APNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDK 194
A +++ KGG IFV+ ++ + L++ FS+ G++ +++E G+
Sbjct: 525 AMSDRAKGGCQIFVRNLPYDLTWQKLKEKFSVCGQVMFAEIKMEGGK------------- 571
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ C G V FDSPES+++A +NGT + G ++ V + R
Sbjct: 572 --SKGC--GTVRFDSPESANQACRMMNGTKITGREVDVRIDR 609
>gi|298709277|emb|CBJ31215.1| poly(A)-binding protein [Ectocarpus siliculosus]
Length = 410
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 142 PKGGNTIFVQ--GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
P G T+FV+ + E + +HFSIFG++ SVSM +G FV DS ++ +A+
Sbjct: 315 PAGPTTLFVRKIDMKVDREDVIKHFSIFGQVLSVSMNPSRGYAFVDLDSHDAVLRAV 371
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 26/102 (25%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G +F++ GI + L FS FG I S K
Sbjct: 90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC--------------------KV 129
Query: 196 ITDDC----ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
+TDD GFV +++ ES+DKAI +VNG + G K+ V
Sbjct: 130 VTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG 171
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I + LR+ FS FG I S + DKA T GFV + +P+ +
Sbjct: 295 IDNDKLREVFSQFGTITSAIVM--------------KDDKATTSK-GFGFVCYTAPDEAT 339
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
+A+TE+NG + L V+LA+R+
Sbjct: 340 RAVTEMNGRMIGTKPLYVALAQRK 363
>gi|296814244|ref|XP_002847459.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238840484|gb|EEQ30146.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 575
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 145 GNTIFVQGA----GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G F++ A G++E+ L++ FS FGK+ V ++ +KG G+V F P S KA+
Sbjct: 418 GTQAFLKHANPSQGVTEDLLQKGFSQFGKVIRVEIDKKKGFGYVDFAEPASLRKAM 473
>gi|194043009|ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
Length = 967
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 145 GNTIFVQGAGIS--EEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
G T+F++ S EE L+ FS G + CS+S + K ++
Sbjct: 736 GCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSM-------------- 781
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAP 243
GFV + PE + KA+ ++ G V G KL+V ++ R K AP
Sbjct: 782 GFGFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAP 824
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 16/85 (18%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
GI+++ LR+ FS FGKI S ++ + + V+ S GFV+F + E +
Sbjct: 215 GITDDQLRELFSNFGKITSC--KIMRDQNGVSKGS--------------GFVSFSTREEA 258
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
+A+TE+NG + G L V+ A+R+
Sbjct: 259 SQALTEMNGKMISGKPLYVAFAQRK 283
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +R KK Y + L +L+ + G +F++ I E L + F
Sbjct: 303 IYVGRAQKKRERMEELKKQYENTRLEKLSKYQ----GVNLFIKNLDDTIDSEKLEEEFKP 358
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 359 FGTITSARVMVDETGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 399
Query: 224 HVQGVKLKVSLARRQ 238
G L V+LA+R+
Sbjct: 400 MFFGKPLYVALAQRK 414
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|71892468|ref|NP_001025455.1| myelin expression factor 2 isoform 2 [Danio rerio]
gi|45758288|gb|AAS76477.1| myelin expression factor 2 [Danio rerio]
Length = 553
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
++ KGG IFV+ +S + L++ FS G++ +++E G +
Sbjct: 470 DRSKGGCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMENGE---------------S 514
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C G V FDSPES++KA +NGT + G ++ V L R
Sbjct: 515 KGC--GTVRFDSPESAEKAFRLMNGTKINGREVDVRLDR 551
>gi|237836677|ref|XP_002367636.1| RNA binding protein, putative [Toxoplasma gondii ME49]
gi|211965300|gb|EEB00496.1| RNA binding protein, putative [Toxoplasma gondii ME49]
Length = 685
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Query: 142 PKGGNT-IFVQGAGISEEFLRQHFSIFGKICSVSMEVEK----GRGFVTFDSPESSDKAI 196
P G N IF SE L HFS++G + S + ++ RGF
Sbjct: 489 PPGANVFIFHIPNEWSEHDLLTHFSVYGPVVSARIASDRLSGRNRGF------------- 535
Query: 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR------RQLKVAPINDAASS 250
GFV+F + +++ A+T +NG V G +LKV + + + L++ P + +
Sbjct: 536 ------GFVSFANGQAAAAAVTAMNGFQVNGKRLKVQIKKGEEQYAQNLRMTPAYNNCND 589
Query: 251 TTW--SAIACHQSLKG 264
+TW +A +C + G
Sbjct: 590 STWLSTAASCSEPRSG 605
>gi|156536405|gb|ABU80357.1| embryonic lethal abnormal vision [Drosophila montana]
Length = 346
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 130 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 187
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 188 QAVNVLNGLRLQNKTIKVSFAR 209
>gi|156536403|gb|ABU80356.1| embryonic lethal abnormal vision [Drosophila littoralis]
Length = 334
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 118 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 175
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 176 QAVNVLNGLRLQNKTIKVSFAR 197
>gi|57231478|gb|AAW47452.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 334
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 118 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 175
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 176 QAVNVLNGLRLQNKTIKVSFAR 197
>gi|57231504|gb|AAW47465.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 334
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 118 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 175
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 176 QAVNVLNGLRLQNKTIKVSFAR 197
>gi|57231496|gb|AAW47461.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 333
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 117 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 174
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 175 QAVNVLNGLRLQNKTIKVSFAR 196
>gi|57231470|gb|AAW47448.1| embryonic lethal abnormal vision protein [Drosophila virilis]
Length = 345
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 129 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 186
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 187 QAVNVLNGLRLQNKTIKVSFAR 208
>gi|57231538|gb|AAW47482.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 340
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 124 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 181
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 182 QAVNVLNGLRLQNKTIKVSFAR 203
>gi|57231546|gb|AAW47486.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 326
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 110 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 167
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 168 QAVNVLNGLRLQNKTIKVSFAR 189
>gi|57231572|gb|AAW47499.1| embryonic lethal abnormal vision protein [Drosophila ezoana]
Length = 343
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 127 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 184
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 185 QAVNVLNGLRLQNKTIKVSFAR 206
>gi|57231474|gb|AAW47450.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231476|gb|AAW47451.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231480|gb|AAW47453.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231484|gb|AAW47455.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231486|gb|AAW47456.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231488|gb|AAW47457.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231490|gb|AAW47458.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231492|gb|AAW47459.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231494|gb|AAW47460.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231498|gb|AAW47462.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231500|gb|AAW47463.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231502|gb|AAW47464.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231506|gb|AAW47466.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231508|gb|AAW47467.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231510|gb|AAW47468.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231514|gb|AAW47470.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231516|gb|AAW47471.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231518|gb|AAW47472.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231520|gb|AAW47473.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231522|gb|AAW47474.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231524|gb|AAW47475.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231526|gb|AAW47476.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231530|gb|AAW47478.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231532|gb|AAW47479.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231534|gb|AAW47480.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231540|gb|AAW47483.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231542|gb|AAW47484.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231544|gb|AAW47485.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231548|gb|AAW47487.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231550|gb|AAW47488.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231552|gb|AAW47489.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231554|gb|AAW47490.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231556|gb|AAW47491.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231560|gb|AAW47493.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231562|gb|AAW47494.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231564|gb|AAW47495.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231568|gb|AAW47497.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 337
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 121 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 178
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 179 QAVNVLNGLRLQNKTIKVSFAR 200
>gi|57231472|gb|AAW47449.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231482|gb|AAW47454.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231512|gb|AAW47469.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231528|gb|AAW47477.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231536|gb|AAW47481.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231558|gb|AAW47492.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231566|gb|AAW47496.1| embryonic lethal abnormal vision protein [Drosophila americana]
gi|57231570|gb|AAW47498.1| embryonic lethal abnormal vision protein [Drosophila americana]
Length = 338
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 122 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 179
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 180 QAVNVLNGLRLQNKTIKVSFAR 201
>gi|395513917|ref|XP_003761168.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 19
[Sarcophilus harrisii]
Length = 954
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 145 GNTIFVQGAGIS--EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G T+F++ S EE L++ FS G + S ++ +K + V
Sbjct: 716 GCTLFIKNLNFSTTEEMLKEVFSKVGTVKSCTVSKKKNKAGVLLS------------MGF 763
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV + PE + KA+ ++ G+ V G KL+V ++ R +K
Sbjct: 764 GFVEYRKPEQAQKALKQLQGSVVDGHKLEVKISERAIK 801
>gi|147781769|emb|CAN74486.1| hypothetical protein VITISV_029928 [Vitis vinifera]
Length = 434
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E LRQ FS FG++ SV + V KG GFV F + S++ A+
Sbjct: 314 TIFVGGLDSEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDAL 365
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEV-EKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
++++ LR HFS FG I S + V E GR GF GFV F+ PE
Sbjct: 354 LNDDGLRDHFSSFGTITSAKVMVDENGRSKGF-------------------GFVCFEKPE 394
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+T++N + L V+LA+R+
Sbjct: 395 EATAAVTDMNSKMIGAKPLYVALAQRK 421
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
+ V + + +R KK Y L +LA + G +FV+ I E L + F
Sbjct: 300 IYVGRAQKKRERMEELKKQYEAIRLEKLAKYQ----GVNLFVKNLDDSIDSEKLEEEFKP 355
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F +PE + KAITE+N
Sbjct: 356 FGTITSAKVMVDDAGKSKGF-------------------GFVCFTTPEEATKAITEMNQR 396
Query: 224 HVQGVKLKVSLARRQ 238
V L V+LA+R+
Sbjct: 397 MVNNKPLYVALAQRK 411
>gi|432884715|ref|XP_004074554.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G G++E+ +RQ FS FG+I + + EKG FV F+S E++ AI
Sbjct: 204 TVYCGGVTTGLTEQIMRQTFSPFGQIMEIRVFPEKGYSFVRFNSHEAAAHAIVS------ 257
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 258 ---------------VNGTSIEGYVVKCYWGK 274
>gi|148666752|gb|EDK99168.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_b
[Mus musculus]
Length = 293
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 23/95 (24%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F S ES+ AI
Sbjct: 122 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVS------ 175
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
VNGT ++G +K + L
Sbjct: 176 ---------------VNGTTIEGHVVKCYWGKETL 195
>gi|194768871|ref|XP_001966534.1| GF22224 [Drosophila ananassae]
gi|190617298|gb|EDV32822.1| GF22224 [Drosophila ananassae]
Length = 490
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 167 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 224
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 225 QAVNVLNGLRLQNKTIKVSFAR 246
>gi|213514260|ref|NP_001133879.1| Nucleolysin TIAR [Salmo salar]
gi|209155676|gb|ACI34070.1| Nucleolysin TIAR [Salmo salar]
Length = 408
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
T++ G +G+SE +RQ FS FG+I + + EKG F+ F S ES+ AI
Sbjct: 222 TVYCGGIQSGLSEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIV 274
>gi|255555523|ref|XP_002518798.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542179|gb|EEF43723.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 438
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + IS+E LRQ FS FG++ SV + KG GFV F +S++ A+
Sbjct: 318 TIFVGGIDSDISDEDLRQPFSQFGEVVSVKIPAGKGCGFVQFADRKSAEDAL 369
>gi|449478802|ref|XP_002192914.2| PREDICTED: RNA binding protein fox-1 homolog 3 [Taeniopygia
guttata]
Length = 316
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 160 LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219
LRQ F FGKI ++VE + F+ E K GFVTF++ +D+A +
Sbjct: 145 LRQMFGQFGKI----LDVE-----IIFN--ERGSKGF------GFVTFETSTDADRAREK 187
Query: 220 VNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQS--LKGNHKDKRHQVIYDD 277
+NGT V+G K++V+ A ++ + W I+ + + ++ V+Y D
Sbjct: 188 LNGTIVEGRKIEVNNATARVMTNKKVANPYTNGWKLISVVGASMVSSSYAGNLGLVVYQD 247
Query: 278 DIFGEE 283
+G E
Sbjct: 248 GFYGAE 253
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 26/101 (25%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G +F++ GI + L FS FG I S K
Sbjct: 90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC--------------------KV 129
Query: 196 ITDDC----ARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232
+TDD GFV ++S +S+DKAI +VNG + G K+ V
Sbjct: 130 VTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFV 170
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I + LR+ FS FG I S + + DKA T GFV + SP+ +
Sbjct: 296 IDNDKLREVFSQFGTITSAVVMKD--------------DKATTSK-GFGFVCYTSPDEAT 340
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
+A+TE+NG + L V+LA+R+
Sbjct: 341 RAVTEMNGRMIGTKPLYVALAQRK 364
>gi|195042014|ref|XP_001991348.1| GH12602 [Drosophila grimshawi]
gi|193901106|gb|EDV99972.1| GH12602 [Drosophila grimshawi]
Length = 511
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 188 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 245
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 246 QAVNVLNGLRLQNKTIKVSFAR 267
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I + L+Q F +FG I S K +TD R GFV F +P
Sbjct: 109 IDDTRLKQEFVVFGNITSA--------------------KVMTDSNNRSKGFGFVCFSNP 148
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
E + KA+TE+NG L V+LA+R+
Sbjct: 149 EEATKAVTEMNGKICGSKPLYVALAQRK 176
>gi|297738892|emb|CBI28137.3| unnamed protein product [Vitis vinifera]
Length = 347
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 18/93 (19%)
Query: 146 NTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N+I+V G +E+ +R+ F+++G I +V + E+G G + G
Sbjct: 7 NSIYVGGLPYNATEDSIRKVFNLYGAIVAVKIINERGVGGKCY----------------G 50
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
FVTF +P S+ AI ++NG + G + V+ R
Sbjct: 51 FVTFTNPRSAIDAINDMNGRDIDGRIVVVNEVR 83
>gi|116195978|ref|XP_001223801.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88180500|gb|EAQ87968.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 247
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 158 EFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
E LR FS +G + + + KG+ FV FD PES+ AI D GF FD P
Sbjct: 26 EALRALFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQAAIED--IHGFELFDKPMQLA 83
Query: 215 KAITEVNGTHVQ 226
A T + T +Q
Sbjct: 84 LARTRSDATVMQ 95
>gi|195402031|ref|XP_002059614.1| embryonic lethal, abnormal vision [Drosophila virilis]
gi|194147321|gb|EDW63036.1| embryonic lethal, abnormal vision [Drosophila virilis]
Length = 516
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 193 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 250
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 251 QAVNVLNGLRLQNKTIKVSFAR 272
>gi|124388985|gb|ABN10621.1| elav [Drosophila recens]
Length = 401
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 110 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 167
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 168 QAVNVLNGLRLQNKTIKVSFAR 189
>gi|124388947|gb|ABN10602.1| elav [Drosophila recens]
gi|124388971|gb|ABN10614.1| elav [Drosophila recens]
gi|124389005|gb|ABN10631.1| elav [Drosophila recens]
gi|124389007|gb|ABN10632.1| elav [Drosophila recens]
gi|124389009|gb|ABN10633.1| elav [Drosophila recens]
gi|124389011|gb|ABN10634.1| elav [Drosophila recens]
gi|124389013|gb|ABN10635.1| elav [Drosophila recens]
gi|124389015|gb|ABN10636.1| elav [Drosophila recens]
gi|124389017|gb|ABN10637.1| elav [Drosophila recens]
gi|124389019|gb|ABN10638.1| elav [Drosophila recens]
gi|124389021|gb|ABN10639.1| elav [Drosophila recens]
gi|124389023|gb|ABN10640.1| elav [Drosophila recens]
gi|124389025|gb|ABN10641.1| elav [Drosophila recens]
gi|124389027|gb|ABN10642.1| elav [Drosophila recens]
gi|124389029|gb|ABN10643.1| elav [Drosophila recens]
gi|124389031|gb|ABN10644.1| elav [Drosophila recens]
Length = 401
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 110 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 167
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 168 QAVNVLNGLRLQNKTIKVSFAR 189
>gi|124388951|gb|ABN10604.1| elav [Drosophila recens]
Length = 400
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 109 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 166
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 167 QAVNVLNGLRLQNKTIKVSFAR 188
>gi|124388979|gb|ABN10618.1| elav [Drosophila recens]
gi|124388981|gb|ABN10619.1| elav [Drosophila recens]
gi|124389003|gb|ABN10630.1| elav [Drosophila recens]
Length = 401
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 110 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 167
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 168 QAVNVLNGLRLQNKTIKVSFAR 189
>gi|124388963|gb|ABN10610.1| elav [Drosophila recens]
Length = 400
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 109 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 166
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 167 QAVNVLNGLRLQNKTIKVSFAR 188
>gi|124388957|gb|ABN10607.1| elav [Drosophila recens]
gi|124388977|gb|ABN10617.1| elav [Drosophila recens]
gi|124388991|gb|ABN10624.1| elav [Drosophila recens]
Length = 403
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 112 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 169
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 170 QAVNVLNGLRLQNKTIKVSFAR 191
>gi|124388959|gb|ABN10608.1| elav [Drosophila recens]
Length = 398
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 107 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 164
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 165 QAVNVLNGLRLQNKTIKVSFAR 186
>gi|124389033|gb|ABN10645.1| elav [Drosophila subquinaria]
Length = 405
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 114 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 171
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 172 QAVNVLNGLRLQNKTIKVSFAR 193
>gi|124388953|gb|ABN10605.1| elav [Drosophila recens]
Length = 401
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 110 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 167
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 168 QAVNVLNGLRLQNKTIKVSFAR 189
>gi|124388961|gb|ABN10609.1| elav [Drosophila recens]
Length = 400
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 109 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 166
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 167 QAVNVLNGLRLQNKTIKVSFAR 188
>gi|124388983|gb|ABN10620.1| elav [Drosophila recens]
gi|124388999|gb|ABN10628.1| elav [Drosophila recens]
Length = 404
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 113 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 170
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 171 QAVNVLNGLRLQNKTIKVSFAR 192
>gi|124388967|gb|ABN10612.1| elav [Drosophila recens]
gi|124388993|gb|ABN10625.1| elav [Drosophila recens]
Length = 399
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 108 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 165
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 166 QAVNVLNGLRLQNKTIKVSFAR 187
>gi|124388997|gb|ABN10627.1| elav [Drosophila recens]
Length = 403
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 112 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 169
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 170 QAVNVLNGLRLQNKTIKVSFAR 191
>gi|124388955|gb|ABN10606.1| elav [Drosophila recens]
gi|124388965|gb|ABN10611.1| elav [Drosophila recens]
gi|124388973|gb|ABN10615.1| elav [Drosophila recens]
Length = 397
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 106 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 163
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 164 QAVNVLNGLRLQNKTIKVSFAR 185
>gi|124388987|gb|ABN10622.1| elav [Drosophila recens]
Length = 402
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 111 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 168
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 169 QAVNVLNGLRLQNKTIKVSFAR 190
>gi|124388969|gb|ABN10613.1| elav [Drosophila recens]
gi|124388975|gb|ABN10616.1| elav [Drosophila recens]
gi|124388989|gb|ABN10623.1| elav [Drosophila recens]
gi|124389001|gb|ABN10629.1| elav [Drosophila recens]
Length = 402
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 111 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 168
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 169 QAVNVLNGLRLQNKTIKVSFAR 190
>gi|124388949|gb|ABN10603.1| elav [Drosophila recens]
Length = 389
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 98 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 155
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 156 QAVNVLNGLRLQNKTIKVSFAR 177
>gi|124388995|gb|ABN10626.1| elav [Drosophila recens]
Length = 403
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 112 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 169
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 170 QAVNVLNGLRLQNKTIKVSFAR 191
>gi|62473376|ref|NP_001014713.1| embryonic lethal abnormal vision, isoform B [Drosophila
melanogaster]
gi|221329608|ref|NP_001138142.1| embryonic lethal abnormal vision, isoform C [Drosophila
melanogaster]
gi|2961399|emb|CAA18091.1| EG:65F1.2 [Drosophila melanogaster]
gi|61677860|gb|AAX52472.1| embryonic lethal abnormal vision, isoform B [Drosophila
melanogaster]
gi|220901638|gb|ACL82875.1| embryonic lethal abnormal vision, isoform C [Drosophila
melanogaster]
Length = 479
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 156 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 213
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 214 QAVNVLNGLRLQNKTIKVSFAR 235
>gi|348542282|ref|XP_003458614.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oreochromis
niloticus]
Length = 386
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G G++E+ +RQ FS FG+I + + EKG F
Sbjct: 204 TVYCGGVTTGLTEQIMRQTFSPFGQIMEIRVFPEKGYSF--------------------- 242
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V F+S E++ AI VNGT ++G +K +
Sbjct: 243 VRFNSHEAAAHAIVSVNGTSIEGYVVKCYWGK 274
>gi|348522243|ref|XP_003448635.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Oreochromis niloticus]
Length = 387
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
T++ G G++E+ +RQ FS FG+I V + +KG FV F+S ES+ AI
Sbjct: 205 TVYCGGVSTGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAIV 257
>gi|195469519|ref|XP_002099685.1| GE16581 [Drosophila yakuba]
gi|194187209|gb|EDX00793.1| GE16581 [Drosophila yakuba]
Length = 478
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 155 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 212
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 213 QAVNVLNGLRLQNKTIKVSFAR 234
>gi|16215602|emb|CAC95017.1| TIAR protein [Xenopus laevis]
Length = 389
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
G+G++E+ +RQ F +FG+I + + EKG F+ F + +
Sbjct: 229 GSGLTEQLMRQTFGVFGQILEIRVFPEKG---------------------YSFIRFSTHD 267
Query: 212 SSDKAITEVNGTHVQGVKLKVSLAR 236
S+ AI VNGT ++G +K +
Sbjct: 268 SAAHAIVSVNGTTIEGHVVKCYWGK 292
>gi|195130285|ref|XP_002009582.1| GI15436 [Drosophila mojavensis]
gi|193908032|gb|EDW06899.1| GI15436 [Drosophila mojavensis]
Length = 475
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 152 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 209
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 210 QAVNVLNGLRLQNKTIKVSFAR 231
>gi|89272470|emb|CAJ83096.1| OTTXETP00000006403 [Xenopus (Silurana) tropicalis]
Length = 389
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
G+G++E+ +RQ F +FG+I + + EKG F+ F + +S+ AI
Sbjct: 229 GSGLTEQLMRQTFGVFGQILEIRVFPEKGYSFIRFSTHDSAAHAIV 274
>gi|294873439|ref|XP_002766628.1| CUG triplet repeat RNA-binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239867660|gb|EEQ99345.1| CUG triplet repeat RNA-binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 372
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEK------GRGFVTFDSP 189
P K G IF+ +E LRQHF +FG I S + V+K G GF+++D+
Sbjct: 269 PQAKGPAGANIFIFSVPDAWTEMDLRQHFGLFGNIVSAKVVVDKQTGISRGYGFISYDNC 328
Query: 190 ESSDKAI 196
+S+++A+
Sbjct: 329 DSAERAV 335
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLA 235
+ KA+TE+NG V L V+LA
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALA 368
>gi|47221605|emb|CAF97870.1| unnamed protein product [Tetraodon nigroviridis]
Length = 400
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF L Q F FG + S + V D+A
Sbjct: 310 EGPEGCN-IFIYH--LPQEFSDSELLQMFLPFGNVISAKVFV---------------DRA 351
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 352 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 392
>gi|325181594|emb|CCA16044.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325191994|emb|CCA26461.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 236
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 25/100 (25%)
Query: 145 GNTIFVQGAG--ISEEFLRQHFSIFGKI--CSVSME--VEKGRGFVTFDSPESSDKAITD 198
GN ++V +++E LRQ F FG++ C + ++ + RGF
Sbjct: 73 GNNLYVANLAHRVTDEELRQLFEKFGRLEKCEIIIDPISRESRGFA-------------- 118
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
FVTF+ + A+ E+NG +QG +++V A+R+
Sbjct: 119 -----FVTFEDVRDASDAVQELNGKDIQGRRMRVEHAKRK 153
>gi|297848560|ref|XP_002892161.1| hypothetical protein ARALYDRAFT_470321 [Arabidopsis lyrata subsp.
lyrata]
gi|297338003|gb|EFH68420.1| hypothetical protein ARALYDRAFT_470321 [Arabidopsis lyrata subsp.
lyrata]
Length = 435
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 136 LAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPES 191
L E P G N +F+ I EF L F FGK+ S + V+K G
Sbjct: 330 LLQTEGPAGAN-LFIYN--IPREFGDQELAAAFQPFGKVLSAKVFVDKATGI-------- 378
Query: 192 SDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GF+++DS ++ AI +NG + G KLKV L R
Sbjct: 379 ------SKCF-GFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
>gi|380748929|ref|NP_001244132.1| nucleolysin TIAR isoform 2 [Gallus gallus]
gi|28883273|gb|AAO49720.1| TIA-1 [Gallus gallus]
Length = 372
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 257
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 258 ---------------VNGTTIEGHVVKCYWGK 274
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDC 200
G ++V+ I ++ LR+ FS +G I S V E +GF
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGSHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 26/100 (26%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR-- 202
I+V+ A + E+ L+ FS FGK+ SV K + D+ R
Sbjct: 192 NIYVKNLPADVDEQGLQDLFSQFGKMLSV--------------------KVMRDNSGRSR 231
Query: 203 --GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV F+ E + KA+ +NG V G L S A+++++
Sbjct: 232 CFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVE 271
>gi|170576488|ref|XP_001893650.1| RNA recognition motif domain containing protein [Brugia malayi]
gi|158600225|gb|EDP37516.1| RNA recognition motif domain containing protein [Brugia malayi]
Length = 632
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 141 KPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
KP G ++++G + + LR FS +G I V +E + F+T+ A T
Sbjct: 153 KPCRGPCLYIRGYDLIADSLRNVFSKYGVINRVFVEERQKSAFITY--------ATT--- 201
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
++ AI E++G V G+ L+VS ARRQ + +
Sbjct: 202 ----------AEAETAIKEMDGNMVNGITLRVSFARRQNQCS 233
>gi|75334880|sp|Q9LEB4.1|RBP45_NICPL RecName: Full=Polyadenylate-binding protein RBP45;
Short=Poly(A)-binding protein RBP45; AltName:
Full=RNA-binding protein 45; Short=NplRBP45
gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length = 409
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 23/92 (25%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
TIFV G ++EE LRQ FS +G++ V + K C GF
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGK-------------------RC--GF 321
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V F + S+++A++ +NGT + G +++S R
Sbjct: 322 VQFGTRASAEQALSSLNGTQLGGQSIRLSWGR 353
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 16/84 (19%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I +E LR+ F++FG + S SP+ GFVTF +PE +
Sbjct: 318 IDDEKLRELFAVFGTVTSCK----------VMKSPQG------QSMGSGFVTFSAPEEAM 361
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
+A+ ++NG V L V+LA+R+
Sbjct: 362 QAVNDMNGKMVGSKPLYVALAQRK 385
>gi|119265|sp|P23241.1|ELAV_DROVI RecName: Full=Protein elav; AltName: Full=Embryonic lethal abnormal
visual protein
gi|157338|gb|AAA28505.1| ELAV [Drosophila virilis]
Length = 519
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 196 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 253
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 254 QAVNVLNGLRLQNKTIKVSFAR 275
>gi|195439330|ref|XP_002067584.1| GK16120 [Drosophila willistoni]
gi|194163669|gb|EDW78570.1| GK16120 [Drosophila willistoni]
Length = 509
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 186 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 243
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 244 QAVNVLNGLRLQNKTIKVSFAR 265
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I +E LR+ FS+FG I +S K +TD+ R GFV F +P
Sbjct: 298 IDDERLRKEFSLFGTI--------------------TSAKVMTDEDGRSKGFGFVCFVAP 337
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+NG V L V+LA+R+
Sbjct: 338 HEATCAVTEMNGRVVGSKPLYVALAQRK 365
>gi|449270204|gb|EMC80905.1| CUG-BP- and ETR-3-like factor 5, partial [Columba livia]
Length = 403
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 27/154 (17%)
Query: 90 PFSAIQPEDSEPVDSKPKFLKVSKRET---NDDRTPVDKKVYGESLLTRLAPNEKPKGGN 146
P+SA P +E + P F V + TP+ + + + + E P+G N
Sbjct: 259 PYSAQSPSVAETL--HPAFTGVQQYAAVYPTTTITPIAQSIPQPPPILQQQQREGPEGCN 316
Query: 147 TIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
+ +EF L Q F FG I S + + D+A
Sbjct: 317 LFIYH---LPQEFGDNELMQMFLPFGNIISSKVFM---------------DRATNQSKCF 358
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 359 GFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKR 392
>gi|18079265|ref|NP_525033.1| embryonic lethal abnormal vision, isoform A [Drosophila
melanogaster]
gi|386763527|ref|NP_001245447.1| embryonic lethal abnormal vision, isoform D [Drosophila
melanogaster]
gi|119264|sp|P16914.1|ELAV_DROME RecName: Full=Protein elav; AltName: Full=Embryonic lethal abnormal
visual protein
gi|157340|gb|AAA28506.1| elav protein [Drosophila melanogaster]
gi|4455922|emb|CAB37430.1| EG:65F1.2 [Drosophila melanogaster]
gi|15291955|gb|AAK93246.1| LD33076p [Drosophila melanogaster]
gi|22831422|gb|AAF45517.2| embryonic lethal abnormal vision, isoform A [Drosophila
melanogaster]
gi|220946076|gb|ACL85581.1| elav-PA [synthetic construct]
gi|220955740|gb|ACL90413.1| elav-PA [synthetic construct]
gi|383293116|gb|AFH07163.1| embryonic lethal abnormal vision, isoform D [Drosophila
melanogaster]
Length = 483
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 160 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 217
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 218 QAVNVLNGLRLQNKTIKVSFAR 239
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 21/84 (25%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
+ +E LRQ FS FG I S V + ++ RGF GFV F +PE+
Sbjct: 308 VDDERLRQEFSKFGDITSAKVMSDNKQSRGF-------------------GFVCFKTPEA 348
Query: 213 SDKAITEVNGTHVQGVKLKVSLAR 236
++KA+TE++G + L V+ A+
Sbjct: 349 ANKALTEMSGHMIGSKPLYVNFAQ 372
>gi|1781299|emb|CAA70700.1| transformer-SR ribonucleoprotein [Nicotiana tabacum]
Length = 235
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 25/105 (23%)
Query: 145 GNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEK----GRGFVTFDSPESSDKAITD 198
GNT++V G ++E L +HFS GK+ SV + VE RGF
Sbjct: 65 GNTLYVTGLSTRVTERDLEEHFSKEGKVKSVFLVVEPRSRISRGF--------------- 109
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAP 243
F+T DS E +++ I +N + ++G + V +RR+ P
Sbjct: 110 ----AFITMDSLEDANRCIKHLNQSVLEGRYITVEKSRRKRARTP 150
>gi|147902038|ref|NP_001087561.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
laevis]
gi|51261513|gb|AAH80105.1| MGC84540 protein [Xenopus laevis]
Length = 389
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I V + +KG FV F S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFSSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGK 285
>gi|170586097|ref|XP_001897817.1| immunodominant antigen homologue [Brugia malayi]
gi|158594756|gb|EDP33337.1| immunodominant antigen homologue, putative [Brugia malayi]
Length = 809
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 141 KPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
KP G ++++G + + LR FS +G I V +E + F+T+ A T
Sbjct: 268 KPCRGPCLYIRGYDLIADSLRNVFSKYGVINRVFVEERQKSAFITY--------ATT--- 316
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
++ AI E++G V G+ L+VS ARRQ + +
Sbjct: 317 ----------AEAETAIKEMDGNMVNGITLRVSFARRQNQCS 348
>gi|432851293|ref|XP_004066951.1| PREDICTED: myelin expression factor 2-like [Oryzias latipes]
Length = 571
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 142 PKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDD 199
PK G IFV+ ++ + L++ FS G++ +++E GR +
Sbjct: 490 PKAGCQIFVRNLSYDLTWQKLKEKFSHCGQVMFAEIKMENGR---------------SKG 534
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C G V FDSPES++KA +NGT + G ++ V + R
Sbjct: 535 C--GTVRFDSPESAEKACRLMNGTKINGREVDVRIDR 569
>gi|45361397|ref|NP_989276.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
gi|39795756|gb|AAH64164.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
Length = 386
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I V + +KG FV F S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFSSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGK 285
>gi|449455232|ref|XP_004145357.1| PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis
sativus]
Length = 436
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +S+E L+Q FS FG + SV + + KG GFV F + ++++ AI
Sbjct: 311 TIFVGGLDSDVSDEDLKQAFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAI 362
>gi|449267712|gb|EMC78625.1| Nucleolysin TIA-1 isoform p40, partial [Columba livia]
Length = 361
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 195 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 248
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 249 ---------------VNGTTIEGHIVKCYWGK 265
>gi|387017378|gb|AFJ50807.1| Nucleolysin TIA-1 isoform p40 [Crotalus adamanteus]
Length = 392
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGK 285
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 23/85 (27%)
Query: 155 ISEEFLRQHFSIFGKI--CSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSP 210
+ +E+L+ F G++ SV M+ + GR GF G+V+F +P
Sbjct: 402 VDDEWLKSEFEACGEVVRASVQMDRQTGRSKGF-------------------GYVSFSTP 442
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLA 235
E+++KAI E+NG + G + V+ A
Sbjct: 443 EAAEKAIAEMNGKEIDGRAVNVNAA 467
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
+ ++ LR+ FS FG I V + E+G +GF G V F SPE
Sbjct: 416 VDDDRLRRAFSSFGSISRVKVMEEEGQRKGF-------------------GLVCFSSPEE 456
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+T++NG + L ++LA+RQ
Sbjct: 457 AAKAMTQMNGRVLGSKPLNIALAKRQ 482
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
+ EF + FG+ M+ E+ +G + S K +TD + GFV+FDS E
Sbjct: 298 TSEFTNVYVKNFGE----DMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHE 353
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
++ KA+ E+NG + G + V A+++
Sbjct: 354 AAKKAVEEMNGKDINGQLVFVGRAQKK 380
>gi|449523756|ref|XP_004168889.1| PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis
sativus]
Length = 437
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +S+E L+Q FS FG + SV + + KG GFV F + ++++ AI
Sbjct: 312 TIFVGGLDSDVSDEDLKQAFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAI 363
>gi|89272716|emb|CAJ83609.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I V + +KG FV F S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFSSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGK 285
>gi|328873245|gb|EGG21612.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 370
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 15/77 (19%)
Query: 160 LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219
L+ F +G + S + ++K G C GFV++D +S+ +AI
Sbjct: 306 LKNLFQQYGNVVSAKVFIDKNTG--------------QSKCF-GFVSYDRSQSAIQAINN 350
Query: 220 VNGTHVQGVKLKVSLAR 236
+NG HV+G KLKV+ R
Sbjct: 351 LNGFHVEGKKLKVNFKR 367
>gi|22329313|ref|NP_171845.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|26449591|dbj|BAC41921.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|28950997|gb|AAO63422.1| At1g03457 [Arabidopsis thaliana]
gi|332189452|gb|AEE27573.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 429
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N +F+ I EF L F FGK+ S + V+K G
Sbjct: 325 EGPAGAN-LFIYN--IPREFEDQELAATFQPFGKVLSAKVFVDKATGI------------ 369
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GF+++DS ++ AI +NG + G KLKV L R
Sbjct: 370 --SKCF-GFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 407
>gi|195155519|ref|XP_002018651.1| GL25911 [Drosophila persimilis]
gi|194114804|gb|EDW36847.1| GL25911 [Drosophila persimilis]
Length = 5525
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 23/99 (23%)
Query: 146 NTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N +++ G G +SE FL+ F+ FG + VS++ ++ V +D +++ A+ D
Sbjct: 792 NCVWIDGVGEKVSESFLQSQFTRFGAVTKVSIDRQRQLALVLYDQVQNAQAAVKD----- 846
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
+ GT ++G KL+V A R+ + A
Sbjct: 847 ----------------MRGTIMRGRKLQVDFASRECQDA 869
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 21/84 (25%)
Query: 155 ISEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I++E L++ FS+FG I V MEV +G+GF G V F S E
Sbjct: 313 INDEKLKEEFSLFGSISRAKVMMEVGQGKGF-------------------GVVCFSSFEE 353
Query: 213 SDKAITEVNGTHVQGVKLKVSLAR 236
+ KA+ E+NG V L V+L +
Sbjct: 354 ASKAVNEMNGRVVGSKTLHVTLGQ 377
>gi|326936530|ref|XP_003214306.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Meleagris gallopavo]
Length = 423
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 255 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIV 307
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I V + E+GR GF G + F SPE
Sbjct: 304 IDDERLRREFSSFGSISRVKVMKEEGRSKGF-------------------GLICFSSPEE 344
Query: 213 SDKAITEVNGTHVQGVKLKVSLARR 237
+ KA+ E+NG + L ++LA+R
Sbjct: 345 ATKAMVEMNGRILGSKSLNIALAQR 369
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 26/98 (26%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR-- 202
++++ G + +E L++ FS FGKI SV K +TD R
Sbjct: 191 NVYIKNFGDDMDDERLKEIFSHFGKILSV--------------------KVMTDSRGRSK 230
Query: 203 --GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV+FDS E++ +A+ +NG + G L V A+++
Sbjct: 231 GFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKK 268
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSME---VEKGRGFVTFDSPE 190
P+ + G IF++ I + L FSIFG I C ++M+ + KG GFV F++ E
Sbjct: 104 PSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEE 163
Query: 191 SSDKAITDDCARGFVTFDSP 210
S+ AI D G + D P
Sbjct: 164 SAQSAI--DKLNGMLLNDKP 181
>gi|356549608|ref|XP_003543184.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
[Glycine max]
Length = 467
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++V G A ++E+ LR HF G+I S+ M +++ FVT+ + E ++KA
Sbjct: 229 TLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKA--------- 279
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSL 262
+ E S+K + ++G++LK+ R Q P +D + A H L
Sbjct: 280 ----AEELSNKLV-------IKGLRLKLMWGRPQ-TTKPESDGSDQARQQASVAHSGL 325
>gi|189339246|ref|NP_446148.1| putative RNA-binding protein 3 [Rattus norvegicus]
gi|149028410|gb|EDL83795.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
gi|149028411|gb|EDL83796.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG + G RQ++V +A T A H
Sbjct: 50 -GFITFTNPEHASDAMRAMNGESLDG---------RQIRVDHAGKSARGTRGGAFGAH 97
>gi|42571323|ref|NP_973752.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189453|gb|AEE27574.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 438
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N +F+ I EF L F FGK+ S + V+K G
Sbjct: 334 EGPAGAN-LFIYN--IPREFEDQELAATFQPFGKVLSAKVFVDKATGI------------ 378
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GF+++DS ++ AI +NG + G KLKV L R
Sbjct: 379 --SKCF-GFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
>gi|355568982|gb|EHH25263.1| hypothetical protein EGK_09053, partial [Macaca mulatta]
gi|355754432|gb|EHH58397.1| hypothetical protein EGM_08237, partial [Macaca fascicularis]
Length = 319
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 22/126 (17%)
Query: 160 LRQHFSIFGKICSVSMEV-EKG-RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
LRQ F FGKI V + E+G +GF GFVTF++ +D+A
Sbjct: 127 LRQMFGQFGKILDVEIIFNERGSKGF-------------------GFVTFETSSDADRAR 167
Query: 218 TEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDD 277
++NGT V+G K++V+ A ++ + W ++ G + +V+Y D
Sbjct: 168 EKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGP-EFYAGKVVYQD 226
Query: 278 DIFGEE 283
+G E
Sbjct: 227 GFYGAE 232
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 26/90 (28%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEV-------EKGRGFVTFDSPESSDKAITDDCARGFVTF 207
++++ LR+ F+ +G I S + E+ RGF GFV F
Sbjct: 153 VTDDELREAFATYGTITSAKIMSDGECSTGERSRGF-------------------GFVCF 193
Query: 208 DSPESSDKAITEVNGTHVQGVKLKVSLARR 237
SPE + KA+TE+NG V L V+LA+R
Sbjct: 194 SSPEEATKAVTEMNGRIVGTKPLYVALAQR 223
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEV-EKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
++++ LR HFS FG I S + V E GR GF GFV F+ PE
Sbjct: 237 LNDDGLRDHFSSFGTITSAKVMVDENGRSKGF-------------------GFVCFEKPE 277
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+T++N + L V+LA+R+
Sbjct: 278 EATAAVTDMNSKMIGAKPLYVALAQRK 304
>gi|326934283|ref|XP_003213221.1| PREDICTED: CUGBP Elav-like family member 5-like [Meleagris
gallopavo]
Length = 379
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 35/156 (22%)
Query: 98 DSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPN-------------EKPKG 144
DS P+ S KVS +P VY + +T +A + E P+G
Sbjct: 234 DSAPLSSGRPGFKVSPPGARFVLSPWITAVYPTTSITPIAQSIPQPPPVLQQQQREGPEG 293
Query: 145 GNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
N + +EF L Q F FG I S + + D+A
Sbjct: 294 CNLFIYH---LPQEFGDNELMQMFLPFGNIISSKVFM---------------DRATNQSK 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 336 CFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKR 371
>gi|223995723|ref|XP_002287535.1| hypothetical protein THAPSDRAFT_261569 [Thalassiosira pseudonana
CCMP1335]
gi|220976651|gb|EED94978.1| hypothetical protein THAPSDRAFT_261569 [Thalassiosira pseudonana
CCMP1335]
Length = 253
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 26/104 (25%)
Query: 142 PKGGNT-IFVQGAGISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPESSDKAI 196
P+G N IF S + + F+ FGK+ S + VE + RGF
Sbjct: 64 PEGANLFIFHIPNDFSNQEMYALFAQFGKVLSARIMVESDTGRSRGF------------- 110
Query: 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV++DS S+ AI+ +NG V+G +LKV +Q+K
Sbjct: 111 ------GFVSYDSARSAADAISHLNGYSVKGKRLKVQ--HKQIK 146
>gi|327309448|ref|XP_003239415.1| hypothetical protein TERG_01400 [Trichophyton rubrum CBS 118892]
gi|326459671|gb|EGD85124.1| hypothetical protein TERG_01400 [Trichophyton rubrum CBS 118892]
Length = 604
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 145 GNTIFVQGA----GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G F++ A G++E+ L++ FS FGK+ V ++ +KG G+V F P KAI
Sbjct: 441 GTQAFLKHANPSQGVTEDLLQKGFSQFGKVIRVEIDKKKGFGYVDFAEPAGLRKAI 496
>gi|126324467|ref|XP_001378428.1| PREDICTED: probable RNA-binding protein 19 [Monodelphis domestica]
Length = 969
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 145 GNTIFVQGAGIS--EEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
G T+F++ S EE L++ FS GK+ CS+S + K ++
Sbjct: 712 GCTLFIKNLNFSTTEETLKEAFSKVGKVKNCSISKKKNKA--------------GVSLSM 757
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
GFV + PE + KA+ ++ G V KL+V ++ R +K A
Sbjct: 758 GFGFVEYQKPEQAQKALKQLQGCMVDDHKLEVRISERAVKPA 799
>gi|359492062|ref|XP_002284337.2| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 409
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G +S+E LRQ FS +G+I SV + V KG GFV F + +++ A+
Sbjct: 280 TIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDAL 331
>gi|359484387|ref|XP_002281678.2| PREDICTED: uncharacterized protein LOC100245744 [Vitis vinifera]
Length = 399
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 18/93 (19%)
Query: 146 NTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N+I+V G +E+ +R+ F+++G I +V + E+G G + G
Sbjct: 59 NSIYVGGLPYNATEDSIRKVFNLYGAIVAVKIINERGVGGKCY----------------G 102
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
FVTF +P S+ AI ++NG + G + V+ R
Sbjct: 103 FVTFTNPRSAIDAINDMNGRDIDGRIVVVNEVR 135
>gi|47086779|ref|NP_997793.1| cytotoxic granule-associated RNA binding protein 1 [Danio rerio]
gi|28279551|gb|AAH45368.1| Cytotoxic granule-associated RNA binding protein 1 [Danio rerio]
Length = 386
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
T++ G G++E+ +RQ FS FG+I V + +KG FV F+S ES+ AI
Sbjct: 205 TVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAI 256
>gi|357140381|ref|XP_003571747.1| PREDICTED: uncharacterized protein LOC100831046 isoform 2
[Brachypodium distachyon]
Length = 383
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAITDD 199
IFV G A +SE+ LR HFS +GK+ + V+ +G GFVTF+S +S ++ I++
Sbjct: 136 IFVGGLPASLSEDDLRDHFSSYGKVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 195
Query: 200 CAR 202
R
Sbjct: 196 RMR 198
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Query: 97 EDSEPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--G 154
E+ ++ K + L V + + +R KK Y S L +LA + G +FV+
Sbjct: 289 EELNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQ----GVNLFVKNLDDS 344
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
I +E L F+ FG I S M E+G+ GFV F +PE +
Sbjct: 345 IDDEKLEAEFAPFGSITSAKVMRNEEGK-----------------SKNFGFVCFSTPEEA 387
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
KAITE N V G L V++A+R+
Sbjct: 388 TKAITEKNQQIVAGKPLYVAIAQRK 412
>gi|133711805|gb|ABO36623.1| putative RNA-binding protein [Solanum lycopersicum]
Length = 479
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 22/95 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++V G A I+E+ LR HF G+I S+ M V++G FVT+ + E + KA
Sbjct: 229 TLYVGGVDARITEQDLRDHFYAHGEIESIKMVVQRGCAFVTYTTREGAVKA--------- 279
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
+ E ++K + ++G++LK+ R Q+
Sbjct: 280 ----AEELANKLV-------IKGLRLKLLWGRPQV 303
>gi|327279534|ref|XP_003224511.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Anolis
carolinensis]
Length = 231
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 29/110 (26%)
Query: 132 LLTRLAPNEKPKGGNTIFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVT 185
LL + +E+ K +FV G E+ L QHFS FG I V + E ++ RGF
Sbjct: 75 LLITIMSSEEGK----LFVGGLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGF-- 128
Query: 186 FDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
GF+TF +PE + A+ +NG V G +++V A
Sbjct: 129 -----------------GFITFANPEHASDAMRAMNGESVDGRQIRVDHA 161
>gi|359492060|ref|XP_003634360.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Vitis vinifera]
Length = 418
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G +S+E LRQ FS +G+I SV + V KG GFV F + +++ A+
Sbjct: 289 TIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDAL 340
>gi|47219454|emb|CAG10818.1| unnamed protein product [Tetraodon nigroviridis]
Length = 413
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 323 EGPEGCN-IFIYH--LPQEFTDSEILQMFLPFGNVISAKVFV---------------DRA 364
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 365 TNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKR 405
>gi|407045013|gb|EKE42956.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 195
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFVT+D E + +A+ ++NGT V G ++ V ARR+
Sbjct: 66 GFVTYDKAEDAKRAVEQLNGTEVDGFRISVDFARRE 101
>gi|67480229|ref|XP_655465.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56472608|gb|EAL50079.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449702424|gb|EMD43067.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 195
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFVT+D E + +A+ ++NGT V G ++ V ARR+
Sbjct: 66 GFVTYDKAEDAKRAVEQLNGTEVDGFRISVDFARRE 101
>gi|167394837|ref|XP_001741121.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165894458|gb|EDR22445.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 195
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFVT+D E + +A+ ++NGT V G ++ V ARR+
Sbjct: 66 GFVTYDKAEDAKRAVEQLNGTEVDGFRISVDFARRE 101
>gi|147843908|emb|CAN83717.1| hypothetical protein VITISV_017075 [Vitis vinifera]
Length = 216
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 18/93 (19%)
Query: 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N+I+V G +E+ +R+ F+++G I +V + E+G G + G
Sbjct: 7 NSIYVGGLPYNATEDSIRKVFNLYGAIVAVKIINERGVGGKCY----------------G 50
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
FVTF +P S+ AI ++NG + G + V+ R
Sbjct: 51 FVTFTNPRSAIDAINDMNGRDIDGRIVVVNEVR 83
>gi|357140379|ref|XP_003571746.1| PREDICTED: uncharacterized protein LOC100831046 isoform 1
[Brachypodium distachyon]
Length = 403
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAITDD 199
IFV G A +SE+ LR HFS +GK+ + V+ +G GFVTF+S +S ++ I++
Sbjct: 156 IFVGGLPASLSEDDLRDHFSSYGKVVEHQIMVDHSTGRSRGFGFVTFESEDSVERVISEG 215
Query: 200 CAR 202
R
Sbjct: 216 RMR 218
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSD 193
P ++ IFV+ G+ L FS FG I S +E EKG +G+
Sbjct: 266 PTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGISKGY---------- 315
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232
G+V F++ +S++KAI +VNGT + G + V
Sbjct: 316 ---------GYVHFETNDSAEKAIEKVNGTLILGKPINV 345
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I +E LR+ FS++G I S K +TD+ R GFV F SP
Sbjct: 298 IDDERLRKEFSLYGTITSA--------------------KVMTDEEGRSKGFGFVCFISP 337
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+NG V L V+LA+R+
Sbjct: 338 NEATCAVTELNGRVVGSKPLYVALAQRK 365
>gi|156083038|ref|XP_001609003.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain containing
protein [Babesia bovis T2Bo]
gi|154796253|gb|EDO05435.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain containing
protein [Babesia bovis]
Length = 420
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 160 LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219
L FS FGKI S + +SD++ FV++D+PES+ +AI
Sbjct: 303 LVHTFSQFGKILSSRI---------------ASDRSTGRHKGYAFVSYDTPESAAQAIQH 347
Query: 220 VNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSA 255
+NG V G +LKV++ + P+ + + A
Sbjct: 348 LNGFTVLGKRLKVTIKKGDESTVPVASSVPGASMQA 383
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
L V + + +R +K Y + L +++ + G +F++ + + L+ FS
Sbjct: 330 LYVGRAQKRHEREAELRKRYEQMKLEKMSKYQ----GVNLFIKNLSDEVDDNLLKTEFSA 385
Query: 167 FGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + E K +GF GFV + SPE + KAI E+N
Sbjct: 386 FGTITSAKVMTDENGKSKGF-------------------GFVCYSSPEEATKAIAEMNQR 426
Query: 224 HVQGVKLKVSLARRQ 238
+ G L V+LA+R+
Sbjct: 427 MLAGKPLYVALAQRK 441
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I +E LR+ FS++G I +S K +TD+ R GFV F SP
Sbjct: 298 IDDERLRKEFSLYGTI--------------------TSAKVMTDEEGRSKGFGFVCFISP 337
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+NG V L V+LA+R+
Sbjct: 338 NEATCAVTELNGRVVGSKPLYVALAQRK 365
>gi|156366101|ref|XP_001626979.1| predicted protein [Nematostella vectensis]
gi|156213874|gb|EDO34879.1| predicted protein [Nematostella vectensis]
Length = 335
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 193 DKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
D+A FV +D+P+ ++KA+ E+NG +Q LKVS AR
Sbjct: 44 DRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 87
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 22/85 (25%)
Query: 157 EEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
+E LR+ F+ FG I S M G RGF GFV + +PE +
Sbjct: 343 DERLREEFAPFGAITSCKIMRAPSGVSRGF-------------------GFVCYSAPEEA 383
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
+KA++E+NG + L V+LA+R+
Sbjct: 384 NKAVSEMNGKMLDNRPLYVALAQRK 408
>gi|301764797|ref|XP_002917810.1| PREDICTED: putative RNA-binding protein 3-like isoform 1
[Ailuropoda melanoleuca]
Length = 156
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG + G RQ++V +A T A H
Sbjct: 50 -GFITFTNPEHASDAMRAMNGESLDG---------RQIRVDHAGKSARGTRGGAYGAH 97
>gi|149744489|ref|XP_001493789.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Equus
caballus]
Length = 156
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG SL RQ++V +A T A H
Sbjct: 50 -GFITFTNPEHASDAMRAMNGE---------SLDGRQIRVDHAGKSARGTRGGAFGAH 97
>gi|195999482|ref|XP_002109609.1| hypothetical protein TRIADDRAFT_20799 [Trichoplax adhaerens]
gi|190587733|gb|EDV27775.1| hypothetical protein TRIADDRAFT_20799 [Trichoplax adhaerens]
Length = 154
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 137 APNEKPKGGNTIFVQGAGIS--EEFLRQHFSIFGKICSVSME------VEKGRGFVTFDS 188
AP+E+ IF+ G G S E +RQ+F+ FGKI ++ ++ V +G GFV F++
Sbjct: 86 APHERRS--KKIFIGGLGASTTETEIRQYFNQFGKILNIDLKKDRDTNVLRGFGFVVFEA 143
Query: 189 PESSDKAIT 197
+S DK +T
Sbjct: 144 EDSVDKVLT 152
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ +E LRQ F FG I S M EKG +GF GFV F SP+
Sbjct: 343 VDDERLRQEFEPFGTITSAKVMRDEKGSSKGF-------------------GFVCFSSPD 383
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+N + L VSLA+R+
Sbjct: 384 EATKAVAEMNNKMIGTKPLYVSLAQRR 410
>gi|432881561|ref|XP_004073841.1| PREDICTED: CUGBP Elav-like family member 3-like [Oryzias latipes]
Length = 374
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 284 EGPEGCN-IFIYH--LPQEFTDSEILQMFLPFGNVISAKVFV---------------DRA 325
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 326 TNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKR 366
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + +R K+ Y + L +L+ + G +FV+ I L + F
Sbjct: 301 LYVGRAQKKRERIEELKRQYETARLEKLSKYQ----GVNLFVKNLDDSIDSVKLEEEFKP 356
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 357 FGTITSARVMVDEHGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 397
Query: 224 HVQGVKLKVSLARRQ 238
G L V+LA+R+
Sbjct: 398 MFHGKPLYVALAQRK 412
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 22/88 (25%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSP 210
G SEE +R F +GKI S+ +E + K +GF GFV F+S
Sbjct: 241 GFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGF-------------------GFVNFESH 281
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
E++ KA+ E+N + G L V A+++
Sbjct: 282 EAAVKAVEELNDKDINGQNLYVGRAQKK 309
>gi|356499475|ref|XP_003518565.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
[Glycine max]
Length = 484
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 23/143 (16%)
Query: 122 PVDKKVYGESLLTRLAPNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK 179
PV K+ G+++ + + T++V G A ++E+ LR HF G+I S+ M +++
Sbjct: 204 PVALKLLGKAVEMNTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQR 263
Query: 180 GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
FVT+ + E ++KA + E S+K + ++G++LK+ R Q
Sbjct: 264 ACAFVTYTTREGAEKA-------------AEELSNKLV-------IKGLRLKLMWGRPQT 303
Query: 240 KVAPINDAASSTTWSAIACHQSL 262
P +D + A H L
Sbjct: 304 S-KPESDGSDQAKQQASVAHSGL 325
>gi|410928558|ref|XP_003977667.1| PREDICTED: CUGBP Elav-like family member 3-like [Takifugu rubripes]
Length = 435
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF L Q F FG + S + V D+A
Sbjct: 345 EGPEGCN-IFIYH--LPQEFSDSELLQMFLPFGNVISAKVFV---------------DRA 386
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 387 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 427
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I+++ L++ FS +G I S V E +GF GFV F SPE
Sbjct: 305 INDDRLKEVFSTYGVITSAKVMTESSHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I V + E+G +GF G + F SPE
Sbjct: 362 IDDEKLRNEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 402
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L ++LA+R
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALAQRH 428
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 24/98 (24%)
Query: 147 TIFVQ--GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA 201
I+++ G + +E L+ FS +GK SV + + K +GF
Sbjct: 249 NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF------------------ 290
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
GFV+FDS E++ KA+ E+NG + G + V A++++
Sbjct: 291 -GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
>gi|410908153|ref|XP_003967555.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2 [Takifugu
rubripes]
Length = 510
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 25/117 (21%)
Query: 127 VYGESLLTRLAPN---EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEK 179
+YG+SLL + E P+G N + +EF L Q F FG + S + +
Sbjct: 404 LYGQSLLQQSVAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNMVSAKVFI-- 458
Query: 180 GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 459 -------------DKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 502
>gi|410908157|ref|XP_003967557.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 4 [Takifugu
rubripes]
Length = 482
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 25/117 (21%)
Query: 127 VYGESLLTRLAPN---EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEK 179
+YG+SLL + E P+G N + +EF L Q F FG + S + +
Sbjct: 376 LYGQSLLQQSVAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNMVSAKVFI-- 430
Query: 180 GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 431 -------------DKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 474
>gi|410908151|ref|XP_003967554.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1 [Takifugu
rubripes]
Length = 530
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 25/117 (21%)
Query: 127 VYGESLLTRLAPN---EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEK 179
+YG+SLL + E P+G N + +EF L Q F FG + S + +
Sbjct: 424 LYGQSLLQQSVAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNMVSAKVFI-- 478
Query: 180 GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 479 -------------DKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 522
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 28/136 (20%)
Query: 107 KFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHF 164
K L V + + ++R K+ + + + RL + G ++V+ I +E LR+ F
Sbjct: 75 KILYVGRAQKKNERQMELKRRFEQLKMERLTRYQ----GVNLYVKNLDDSIDDERLRKEF 130
Query: 165 SIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDS-PESSDKAITEVN 221
S FG I S + +E+GR GF GFV F E + KA+TE+N
Sbjct: 131 SPFGTITSAKVMLEEGRSKGF-------------------GFVLFSQHAEEATKAVTEMN 171
Query: 222 GTHVQGVKLKVSLARR 237
G V L V+LA+R
Sbjct: 172 GRIVGSKPLYVALAQR 187
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 24/104 (23%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKA 195
EK K ++V+ G +++E L++ F +G I S V ++ KGRGF
Sbjct: 1 EKAKLFTNVYVKDFGDELNDETLKEMFEKYGTITSHRVMIKDGKGRGF------------ 48
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHV-QGVKLKVSLARRQ 238
GFV F++PES++ A+ E+NG + +G L V A+++
Sbjct: 49 -------GFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKK 85
>gi|348529973|ref|XP_003452486.1| PREDICTED: CUGBP Elav-like family member 3-like [Oreochromis
niloticus]
Length = 453
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 363 EGPEGCN-IFIYH--LPQEFTDSEILQMFLPFGNVISAKVFV---------------DRA 404
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 405 TNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKR 445
>gi|194746333|ref|XP_001955635.1| GF18861 [Drosophila ananassae]
gi|190628672|gb|EDV44196.1| GF18861 [Drosophila ananassae]
Length = 345
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 80/196 (40%), Gaps = 35/196 (17%)
Query: 105 KPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEK--PKGGNTIFVQGA--GISEEFL 160
KPK K+ K T +T K+V L +L P K P+ G + VQ G E+ L
Sbjct: 6 KPKAQKIEKVATPAKKTETTKEVVSGQLKKKLKPQGKQGPERG-VVLVQRLPHGFFEQQL 64
Query: 161 RQHFSIFGKICSVSM------EVEKGRGFVTFDSPESSDKAI-TDDCARGF--------- 204
RQ+FS FG++ V M +G FV F+ PE + A T D F
Sbjct: 65 RQYFSQFGRVTRVRMGRSERTGNSRGFAFVEFEYPEVAQVAAETMDNYLMFQKVVKAKYI 124
Query: 205 ----VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQ 260
F+ +S K +T G + L + RQ V ND W+ AC +
Sbjct: 125 PPEKQAFNYFRTSVKRVTNKAGKQIFVSNL---IQARQRSVTKQND------WNESACQK 175
Query: 261 -SLKGNHKDKRHQVIY 275
+L +K K+ Q Y
Sbjct: 176 RTLANLNKIKKVQEKY 191
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I V + E+G +GF G + F SPE
Sbjct: 361 IDDEKLRNEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 401
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L ++LA+R
Sbjct: 402 ATKAMTEMNGRILGSKPLSIALAQRH 427
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 24/98 (24%)
Query: 147 TIFVQ--GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA 201
I+++ G + +E L+ FS +GK SV + + K +GF
Sbjct: 248 NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF------------------ 289
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
GFV+FDS E++ KA+ E+NG + G + V A++++
Sbjct: 290 -GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 326
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I V + E+G +GF G + F SPE
Sbjct: 362 IDDEKLRNEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 402
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L ++LA+R
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALAQRH 428
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFD 208
G + +E L+ FS +GK SV + + K +GF GFV+FD
Sbjct: 256 GGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF-------------------GFVSFD 296
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
S E++ KA+ E+NG + G + V A++++
Sbjct: 297 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
>gi|147856810|emb|CAN81343.1| hypothetical protein VITISV_008697 [Vitis vinifera]
Length = 536
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G +S+E LRQ FS +G+I SV + V KG GFV F + +++ A+
Sbjct: 177 TIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDAL 228
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I V + E+G +GF G + F SPE
Sbjct: 362 IDDEKLRNEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 402
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L ++LA+R
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALAQRH 428
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 24/98 (24%)
Query: 147 TIFVQ--GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA 201
I+++ G + +E L+ FS +GK SV + + K +GF
Sbjct: 249 NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF------------------ 290
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
GFV+FDS E++ KA+ E+NG + G + V A++++
Sbjct: 291 -GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
>gi|357483947|ref|XP_003612260.1| Scaffold attachment factor B1 [Medicago truncatula]
gi|355513595|gb|AES95218.1| Scaffold attachment factor B1 [Medicago truncatula]
Length = 303
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 25/107 (23%)
Query: 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK----GRGFVTFDSPESSDKAIT 197
GG+T++V G + ++E L +HFS GK+ S + VE RGF
Sbjct: 129 GGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFA------------- 175
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPI 244
FVT D+ E +++ I +N + ++G + V ++R+ P
Sbjct: 176 ------FVTMDTAEDANRCIKYLNQSILEGRYITVERSKRKRPRTPT 216
>gi|301093774|ref|XP_002997732.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109981|gb|EEY68033.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 226
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 25/100 (25%)
Query: 145 GNTIFVQGAG--ISEEFLRQHFSIFGKI--CSVSME--VEKGRGFVTFDSPESSDKAITD 198
GN ++V + ++ L+ FS FG++ C V ++ ++ RGF
Sbjct: 64 GNNLYVANLATRVGQQDLQDLFSKFGRVEKCEVIVDPVTKESRGF--------------- 108
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFVTF+ ++ A+ E+N VQG K++V A+R+
Sbjct: 109 ----GFVTFEDVRDAEDAVKELNNQEVQGRKMRVEHAKRK 144
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I V + E+G +GF G + F SPE
Sbjct: 581 IDDEKLRKEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 621
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L ++LA+R
Sbjct: 622 ALKAMTEMNGRILGSKPLSIALAQRH 647
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 144 GGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
G +F++ I + L +HFS FG+I S K ++DD
Sbjct: 373 GIGNVFIKNLDKSIDNKTLYEHFSAFGRILS--------------------SKVMSDDQG 412
Query: 202 ---RGFVTFDSPESSDKAITEVNGTHVQGVKLKVS-LARRQLKVAPINDAASSTTWSAIA 257
FV F + ++D+AI E+NG +QG K+ V RQ + A + AS T I
Sbjct: 413 SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKASEFTNVYI- 471
Query: 258 CHQSLKGNHKDKRHQVIY 275
++ G+ D+R + ++
Sbjct: 472 --KNFGGDMDDERLKDVF 487
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 22/92 (23%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFD 208
G + +E L+ FS +GK SV + + K +GF GFV+FD
Sbjct: 475 GGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF-------------------GFVSFD 515
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
S E++ KA+ E+NG + G + V+ A+++++
Sbjct: 516 SHEAAKKAVEEMNGRDINGQLIFVARAQKKVE 547
>gi|344292751|ref|XP_003418089.1| PREDICTED: putative RNA-binding protein 3-like [Loxodonta africana]
Length = 154
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG SL RQ++V +A T A H
Sbjct: 50 -GFITFTNPEHASDAMRAMNGE---------SLDGRQIRVDHAGKSARGTRGGAFGAH 97
>gi|325185984|emb|CCA20488.1| RNAbinding protein putative [Albugo laibachii Nc14]
Length = 754
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 137 APNEKPKGGNTIFVQGAGIS--EEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPES 191
A N+ N +FV+ S EE LR F FGK+ V + E ++ +GF
Sbjct: 234 AQNKADYACNRLFVRNLPFSAVEEDLRTIFEAFGKVAEVHIPLDETKRRKGF-------- 285
Query: 192 SDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
GFV+FD+ + KA+ V+G QG L V+ A
Sbjct: 286 -----------GFVSFDTVSDAQKALQNVDGIAFQGRVLYVTFA 318
>gi|255930133|ref|XP_002556626.1| Pc06g00100 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581239|emb|CAP79003.1| Pc06g00100 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 554
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++E L+ FS FG + V ++ +KG G+V F PE KAI
Sbjct: 422 GVTEALLQSAFSTFGAVTKVEIDKKKGFGYVDFAEPEGLRKAI 464
>gi|210075649|ref|XP_502423.2| YALI0D04917p [Yarrowia lipolytica]
gi|199425763|emb|CAG80611.2| YALI0D04917p [Yarrowia lipolytica CLIB122]
Length = 430
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
T+FV G + +SE+ LRQ+F FG I V + KG GFV + +S++ AIT
Sbjct: 235 TVFVGGLSSSVSEDELRQYFQGFGDITYVKIPPGKGCGFVQYVQRQSAEMAIT 287
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 28/131 (21%)
Query: 115 ETNDDRTPVDKKVYGESLLT---RLAPNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGK 169
+T + DK++Y + R+ P EK ++++ A +SE+ LR+ F+ FGK
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKY---TNLYMKNLDADVSEDLLREKFAEFGK 226
Query: 170 ICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG--FVTFDSPESSDKAITEVNGTHVQG 227
I S+++ ++ R RG FV FD+PE + +A VNGT
Sbjct: 227 IVSLAIAKDENR------------------LCRGYAFVNFDNPEDARRAAETVNGTKFGS 268
Query: 228 VKLKVSLARRQ 238
L V A+++
Sbjct: 269 KCLYVGRAQKK 279
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I V + E+G +GF G + F SPE
Sbjct: 362 IDDEKLRNEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 402
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L ++LA+R
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALAQRH 428
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 24/98 (24%)
Query: 147 TIFVQ--GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA 201
I+++ G + +E L+ FS +GK SV + + K +GF
Sbjct: 249 NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF------------------ 290
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
GFV+FDS E++ KA+ E+NG + G + V A++++
Sbjct: 291 -GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
>gi|41054740|ref|NP_957426.1| nucleolysin TIAR [Danio rerio]
gi|33416339|gb|AAH55501.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Danio
rerio]
Length = 370
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E +RQ FS FG+I + + EKG F+ F S ES+ AI
Sbjct: 205 TVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVS------ 258
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 259 ---------------VNGTTIEGHVVKCYWGK 275
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I V + E+G +GF G + F SPE
Sbjct: 362 IDDEKLRNEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 402
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L ++LA+R
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALAQRH 428
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 24/98 (24%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA 201
I+++ G + +E L+ FS +GK SV + + K +GF
Sbjct: 249 NIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF------------------ 290
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
GFV+FDS E++ KA+ E+NG + G + V A++++
Sbjct: 291 -GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
>gi|348526886|ref|XP_003450950.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 1
[Oreochromis niloticus]
Length = 458
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 368 EGPEGCN-IFIYH--LPQEFSDSEMLQMFLPFGNVISAKVFV---------------DRA 409
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 410 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 450
>gi|302142363|emb|CBI19566.3| unnamed protein product [Vitis vinifera]
Length = 324
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G +S+E LRQ FS +G+I SV + V KG GFV F + +++ A+
Sbjct: 195 TIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDAL 246
>gi|425775443|gb|EKV13712.1| Nonsense-mediated mRNA decay protein Upf3, putative [Penicillium
digitatum PHI26]
gi|425783735|gb|EKV21562.1| Nonsense-mediated mRNA decay protein Upf3, putative [Penicillium
digitatum Pd1]
Length = 551
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++E L+ F++FG + V ++ +KG G++ F PE+ KAI
Sbjct: 417 GVTEALLQSAFTLFGAVTKVEIDKKKGFGYIDFAEPEALRKAI 459
>gi|410908155|ref|XP_003967556.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3 [Takifugu
rubripes]
Length = 468
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 25/117 (21%)
Query: 127 VYGESLLTRLAPN---EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEK 179
+YG+SLL + E P+G N + +EF L Q F FG + S + +
Sbjct: 362 LYGQSLLQQSVAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNMVSAKVFI-- 416
Query: 180 GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 417 -------------DKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 460
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I V + E+GR GF G + F SPE
Sbjct: 304 IDDEKLRREFSSFGSISRVKVMQEEGRSKGF-------------------GLICFSSPEE 344
Query: 213 SDKAITEVNGTHVQGVKLKVSLARR 237
+ KA+TE+NG + L ++LA++
Sbjct: 345 ATKAMTEMNGRILGSKPLNIALAQK 369
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 24/97 (24%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA 201
++++ G + +E L++ FS +GK SV + + K +GF
Sbjct: 191 NVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGF------------------ 232
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV+FDS E++ KA+ E+NG + G L V A+++
Sbjct: 233 -GFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKK 268
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 24/97 (24%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKG---RGFVTFDSPESSDKAITDDCA 201
++V+ G + +E L++ FS +GK SV + + G +GF
Sbjct: 290 NVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGF------------------ 331
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV+FDS E++ KA+ E+NG V G L V A+++
Sbjct: 332 -GFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKK 367
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 21/85 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E L + FS FG I V + E+GR GF G + F SPE
Sbjct: 403 IDDEKLWREFSSFGSISRVKIMREEGRSKGF-------------------GLICFSSPEE 443
Query: 213 SDKAITEVNGTHVQGVKLKVSLARR 237
+ KA+ E+NG + L ++LA+R
Sbjct: 444 ATKAMAEMNGRILGSKPLYIALAQR 468
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I +E LR+ FS++G I S K +TD+ R GFV F SP
Sbjct: 298 IDDERLRKEFSLYGTITSA--------------------KVMTDEEGRSKGFGFVCFISP 337
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+NG + L V+LA+R+
Sbjct: 338 NEATCAVTELNGRVIGSKPLYVALAQRK 365
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
Query: 105 KPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQ 162
K + L V + + +R KK Y + L +LA + G +F++ I +E L++
Sbjct: 297 KSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQ----GVNLFIKNLDDSIDDEKLKE 352
Query: 163 HFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222
F+ +G I S + ++ E + K GFV F SPE + KA+TE N
Sbjct: 353 EFAPYGTITSARVMRDQ----------EGNSKGF------GFVCFSSPEEATKAMTEKNQ 396
Query: 223 THVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 397 QIVAGKPLYVAIAQRK 412
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 160 LRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
LR+ FS +G I S V E +GF GFV F SPE + KA+
Sbjct: 310 LRKEFSPYGVITSAKVMTEGSHSKGF-------------------GFVCFSSPEEATKAV 350
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
TE+NG V L V+LA+R+
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|229367606|gb|ACQ58783.1| Heterogeneous nuclear ribonucleoprotein G [Anoplopoma fimbria]
Length = 289
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGI--SEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G +E+ L Q+FS +G I V + E K RGF
Sbjct: 10 LFIGGLNTETTEKALEQYFSKYGGIVEVILMKDRETNKSRGFA----------------- 52
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FVTF+SP + A E+NG + G +KV A
Sbjct: 53 --FVTFESPADAKDAAREMNGKSLDGKPIKVEQA 84
>gi|388494114|gb|AFK35123.1| unknown [Medicago truncatula]
Length = 425
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E L+Q FS +G+I SV + V KG GFV F + ++++A+
Sbjct: 296 TIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEAL 347
>gi|388516667|gb|AFK46395.1| unknown [Lotus japonicus]
Length = 268
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 25/110 (22%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK----GRGFVTFDSPESSD 193
E GGNT++V G + ++E L +HF+ GK+ S + VE RGF
Sbjct: 85 EDRNGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFA--------- 135
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAP 243
F+T D+ E +++ + +N + ++G + V +RR+ P
Sbjct: 136 ----------FITMDTVEDANRCVKYLNQSVLEGRYITVERSRRKRPRTP 175
>gi|308321266|gb|ADO27785.1| nucleolysin tiar [Ictalurus furcatus]
Length = 374
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 27/114 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G+S+ +RQ FS FG+I + + EKG F+ F S ES+ AI
Sbjct: 205 TVYCGGIQSGLSDHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVS------ 258
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA----PINDAASSTTWS 254
VNGT ++G +K + +A P+ + W
Sbjct: 259 ---------------VNGTTIEGHIVKCYWGKESPDMAKTVQPVTEQVDYGQWG 297
>gi|410911840|ref|XP_003969398.1| PREDICTED: CUGBP Elav-like family member 3-like [Takifugu rubripes]
Length = 458
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 368 EGPEGCN-IFIYH--LPQEFTDSEILQMFLPFGNVISAKVFV---------------DRA 409
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 410 TNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKR 450
>gi|348507121|ref|XP_003441105.1| PREDICTED: nucleolysin TIAR [Oreochromis niloticus]
Length = 382
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
T++ G +G+SE +RQ FS FG+I V + EKG F+ F S +S+ AI
Sbjct: 205 TVYCGGIQSGLSEHLMRQTFSPFGQIMEVRVFPEKGYSFIRFSSHDSAAHAIV 257
>gi|432908655|ref|XP_004077968.1| PREDICTED: CUGBP Elav-like family member 3-like [Oryzias latipes]
Length = 457
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 367 EGPEGCN-IFIYH--LPQEFSDSEMLQMFLPFGNVISAKVFV---------------DRA 408
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 409 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 449
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFL 160
D K K L V++ + +R ++ Y ++ + +L+ + G ++V+ + ++ L
Sbjct: 290 DLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQ----GVNLYVKNLEDDVDDDKL 345
Query: 161 RQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
R F FG I S M EKG +GF GFV F SP+ + KAI
Sbjct: 346 RAEFEPFGTITSCKVMSDEKGSSKGF-------------------GFVCFSSPDEATKAI 386
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
E+N + L VSLA+R+
Sbjct: 387 AEMNNKMIGSKPLYVSLAQRR 407
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEK---GRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
IS+E L++ F+ +G I S + + GRG GFV F +PE
Sbjct: 326 ISDEKLKEMFAEYGTITSCKVMRDPTGIGRG-------------------SGFVAFSTPE 366
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ +A+ E+NG + G L V+LA+R+
Sbjct: 367 EASRALGEMNGKMIAGKPLYVALAQRK 393
>gi|328862054|gb|EGG11156.1| hypothetical protein MELLADRAFT_76768 [Melampsora larici-populina
98AG31]
Length = 712
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 136 LAPNEKPKGGNTIFVQG---AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESS 192
L PN K T+ V+ + +S+ ++R +FS FG + SVS++V + VTF S E +
Sbjct: 281 LRPN---KSKTTLVVENIPQSSLSDRYVRDYFSTFGSLVSVSVDVYNAQALVTFQSAEDA 337
Query: 193 DKA 195
KA
Sbjct: 338 AKA 340
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSME---VEKGRGFVTFDSPE 190
P+ + G IF++ I + L FSIFG I C ++M+ + KG GFV F++ E
Sbjct: 104 PSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEE 163
Query: 191 SSDKAITDDCARGFVTFDSP 210
S+ AI D G + D P
Sbjct: 164 SAQSAI--DKLNGMLLNDKP 181
>gi|356557398|ref|XP_003547003.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 404
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 133 LTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPE 190
+ ++ P E IFV +SEE L+Q+F FG+I SV ++ KG GFV F +
Sbjct: 199 VVQVQPPEYDVNNTAIFVGNLDLNVSEEELKQNFLQFGEIVSVKVQSGKGCGFVQFGTRA 258
Query: 191 SSDKAI 196
S+++AI
Sbjct: 259 SAEEAI 264
>gi|194766417|ref|XP_001965321.1| GF20711 [Drosophila ananassae]
gi|190617931|gb|EDV33455.1| GF20711 [Drosophila ananassae]
Length = 5735
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 146 NTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N +++ G G +SE FL+ F+ FG + VS++ + V +D +++ A+ D
Sbjct: 820 NCVWIDGVGEKVSESFLQSQFTRFGTVTKVSIDRNRQLALVLYDQVQNAQAAVKD----- 874
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
+ GT ++G KL+V A R+ + A
Sbjct: 875 ----------------MRGTIMRGRKLQVDFASRECQDA 897
>gi|148235537|ref|NP_001089902.1| uncharacterized protein LOC734969 [Xenopus laevis]
gi|83318255|gb|AAI08750.1| MGC132026 protein [Xenopus laevis]
Length = 667
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 146 NTIFVQGAGISEEFLRQHFSIFGKICS-VSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
NT++VQG ++E+ + F K C V + G+ V + + + K D G
Sbjct: 389 NTVYVQG--LNEDVTVEEIVDFFKHCGDVKINKRTGQPLVNIFTDKETGKPKGD----GT 442
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
V+F+ P S+ A+ +G + G KLKVSLAR+
Sbjct: 443 VSFEDPPSAKTAVELCDGKDLNGSKLKVSLARK 475
>gi|356553476|ref|XP_003545082.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
[Glycine max]
Length = 482
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++V G A ++E+ LR HF G+I S+ M +++ FVT+ + E ++KA
Sbjct: 229 TLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKA--------- 279
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSL 262
+ E S+K + ++G++LK+ R Q P +D + A H L
Sbjct: 280 ----AEELSNKLV-------IKGLRLKLMWGRPQTS-KPESDGSDQARQQASVAHSGL 325
>gi|294884876|gb|ADF47446.1| TIA1-like protein, partial [Dugesia japonica]
Length = 443
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 21/96 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDD 199
E PK +FV G +++E L HF FG I ++ + F P+++
Sbjct: 220 ETPKSYTNVFVTGENVTQEMLEPHFVKFGTIKNI-------KAF-----PKNN------- 260
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
+ F+ + S E++ AI ++NG + V+LK S A
Sbjct: 261 --QSFINYYSHEAAANAIHQMNGFLLNNVELKCSWA 294
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 188 SPESSDKAITDDCAR----GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
P +S K +TD R GFV F PE + +A+TE+N T V L V+LA+R+
Sbjct: 308 GPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQRK 362
>gi|345326922|ref|XP_003431097.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2
[Ornithorhynchus anatinus]
Length = 448
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N + +EF L Q F FG + S + V D+A
Sbjct: 358 EGPEGCNLFIYH---LPQEFGDAELMQMFLPFGNVISAKVFV---------------DRA 399
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 400 TNQSKCFGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKR 440
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 23/82 (28%)
Query: 161 RQHFSIFGKICSVSMEVE----KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
R+HF+ +G I S + E RGF GFV F SPE + KA
Sbjct: 309 REHFTEYGTITSARVMREPATGTSRGF-------------------GFVCFSSPEEAAKA 349
Query: 217 ITEVNGTHVQGVKLKVSLARRQ 238
+TE+N V G + V+LA+R+
Sbjct: 350 VTEMNNKLVLGKPIFVALAQRK 371
>gi|67677974|gb|AAH97641.1| LOC733270 protein [Xenopus laevis]
Length = 666
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 146 NTIFVQGAGISEEFLRQHFSIFGKICS-VSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
NT++VQG ++E+ + F K C V + G+ V + + + K D G
Sbjct: 385 NTVYVQG--LNEDVTVEEIVDFFKHCGDVKINKRTGQPLVNIFTDKETGKPKGD----GT 438
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
V+F+ P S+ A+ +G + G KLKVSLAR+
Sbjct: 439 VSFEDPPSAKTAVELCDGKDLNGSKLKVSLARK 471
>gi|357617939|gb|EHJ71078.1| putative RNA-binding protein [Danaus plexippus]
Length = 397
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI---TDDCARGFVTFDSPE 211
+++E +R FS G++ S + KG F P++ + A+ FV + PE
Sbjct: 29 MTQEEIRSLFSSIGEVESCKLIRNKGAAF-----PDALNHALHGGGQSLGYAFVNYHRPE 83
Query: 212 SSDKAITEVNGTHVQGVKLKVSLAR 236
++KAI +NG +Q +KVS AR
Sbjct: 84 DAEKAIATLNGLRLQNKTIKVSYAR 108
>gi|348526888|ref|XP_003450951.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 2
[Oreochromis niloticus]
Length = 405
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 315 EGPEGCN-IFIYH--LPQEFSDSEMLQMFLPFGNVISAKVFV---------------DRA 356
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 357 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 397
>gi|187097098|ref|NP_001119609.1| sex-lethal [Acyrthosiphon pisum]
gi|98986311|tpe|CAJ55783.1| TPA: sex-lethal [Acyrthosiphon pisum]
gi|239792967|dbj|BAH72757.1| ACYPI000005 [Acyrthosiphon pisum]
Length = 205
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 19/79 (24%)
Query: 160 LRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
L Q F+ G+I C V +V+ G F GFV F PE + KAI
Sbjct: 25 LHQMFTQIGQIEACRVMKDVKTGYSF-----------------GFGFVNFVRPEDASKAI 67
Query: 218 TEVNGTHVQGVKLKVSLAR 236
+NG V+ +LKVS AR
Sbjct: 68 EVMNGLQVENKRLKVSYAR 86
>gi|432852720|ref|XP_004067351.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 1
[Oryzias latipes]
Length = 481
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N + +EF L Q F FG + S + V D+A
Sbjct: 391 EGPEGCNLFIYH---LPQEFGDAELMQMFLPFGNVISAKVFV---------------DRA 432
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 433 TNQSKCFGFVSFDNPSSAQAAIQAMNGFQIGMKRLKVQLKR 473
>gi|165935740|gb|ABY75165.1| RNA binding protein [Arachis diogoi]
Length = 142
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G +++E LRQ FS +G+I SV + V KG GFV F ++++A+
Sbjct: 12 TIFVGGLDPNVTDEDLRQQFSQYGEIVSVKVPVGKGCGFVQFAIRNNAEEAL 63
>gi|195035277|ref|XP_001989104.1| GH11539 [Drosophila grimshawi]
gi|193905104|gb|EDW03971.1| GH11539 [Drosophila grimshawi]
Length = 5843
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 146 NTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N +++ G G +SE FL+ F+ FG + VS++ + V +D +++ A+ D
Sbjct: 745 NCVWIDGCGEKVSESFLQSQFTRFGTVTKVSIDRTRQLALVLYDQVQNAQAAVKD----- 799
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
+ GT ++G KL+V A R+ + A
Sbjct: 800 ----------------MRGTIMRGRKLQVDFASRECQDA 822
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 22/85 (25%)
Query: 157 EEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
+E L+ F+ FG I S M+ EKG +GF GFV F SP+ +
Sbjct: 381 DEKLQNEFTPFGTITSCKVMKDEKGTSKGF-------------------GFVCFSSPDEA 421
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
KA+ E+NG + L VSLA+R+
Sbjct: 422 TKAVAEMNGKMLGSKPLYVSLAQRK 446
>gi|348500286|ref|XP_003437704.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Oreochromis
niloticus]
Length = 481
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N + +EF L Q F FG + S + V D+A
Sbjct: 391 EGPEGCNLFIYH---LPQEFGDAELMQMFLPFGNVISAKVFV---------------DRA 432
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 433 TNQSKCFGFVSFDNPSSAQAAIQAMNGFQIGMKRLKVQLKR 473
>gi|149638168|ref|XP_001508614.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1
[Ornithorhynchus anatinus]
Length = 446
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N + +EF L Q F FG + S + V D+A
Sbjct: 356 EGPEGCNLFIYH---LPQEFGDAELMQMFLPFGNVISAKVFV---------------DRA 397
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 398 TNQSKCFGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKR 438
>gi|410912254|ref|XP_003969605.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Takifugu
rubripes]
Length = 481
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N + +EF L Q F FG + S + V D+A
Sbjct: 391 EGPEGCNLFIYH---LPQEFGDAELMQMFLPFGNVISAKVFV---------------DRA 432
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 433 TNQSKCFGFVSFDNPSSAQAAIQAMNGFQIGMKRLKVQLKR 473
>gi|345326924|ref|XP_003431098.1| PREDICTED: CUGBP Elav-like family member 3 isoform 3
[Ornithorhynchus anatinus]
Length = 447
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N + +EF L Q F FG + S + V D+A
Sbjct: 357 EGPEGCNLFIYH---LPQEFGDAELMQMFLPFGNVISAKVFV---------------DRA 398
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 399 TNQSKCFGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKR 439
>gi|449477354|ref|XP_002196178.2| PREDICTED: probable RNA-binding protein 19 [Taeniopygia guttata]
Length = 944
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 145 GNTIFVQGAGI--SEEFLRQHFSIFG--KICSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
G T+F++ +E+ L++ FS G K C++S + +K ++
Sbjct: 715 GCTLFIKNLNFATTEDTLKETFSKVGALKSCTISKKKDKAGTLLSM-------------- 760
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
GFV + PES+ KA+ ++ G V G KL+V L+ R ++ A
Sbjct: 761 GFGFVEYKKPESAQKALRQLQGCTVDGHKLEVKLSERAVRPA 802
>gi|390478372|ref|XP_002761622.2| PREDICTED: CUGBP Elav-like family member 5 [Callithrix jacchus]
Length = 383
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 274 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 330
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 331 M---------------DRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKR 375
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 22/85 (25%)
Query: 157 EEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
+E L+ F+ FG I S M+ EKG +GF GFV F SP+ +
Sbjct: 470 DEKLQNEFTPFGTITSCKVMKDEKGTSKGF-------------------GFVCFSSPDEA 510
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
KA+ E+NG + L VSLA+R+
Sbjct: 511 TKAVAEMNGKMLGSKPLYVSLAQRK 535
>gi|115397199|ref|XP_001214191.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192382|gb|EAU34082.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 546
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++E L F+ FGK+ V ++ +KG G+V F PE KAI
Sbjct: 419 GVTEPLLEAAFTPFGKVVKVEIDKKKGFGYVDFAEPEGLQKAI 461
>gi|449471209|ref|XP_004153241.1| PREDICTED: polyadenylate-binding protein RBP45-like, partial
[Cucumis sativus]
Length = 156
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 23/102 (22%)
Query: 137 APNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDK 194
A NE TIFV A +++E LRQ F +G++ V + V K GFV F +D+
Sbjct: 8 AQNENDPNNTTIFVGNLDANVTDEHLRQVFGQYGELVHVKIPVGKRCGFVQF-----ADR 62
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+CA ++A+ +NGT + G +++S R
Sbjct: 63 ----NCA------------EEALRVLNGTQIGGQNIRLSWGR 88
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I +E LR F FG I S M EKG +GF GFV F SP+
Sbjct: 344 IDDERLRAEFEPFGTITSAKVMRDEKGSSKGF-------------------GFVCFSSPD 384
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+N + L VSLA+R+
Sbjct: 385 EATKAVAEMNNKMIGAKPLYVSLAQRR 411
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I ++ L+Q FS FG I S P + GFV F +PE +
Sbjct: 25 IDDDKLKQLFSQFGSITSCK----------VMRDPNGISRG------SGFVAFTTPEEAS 68
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
+AI E+NG V G L V+LA+R+
Sbjct: 69 RAILEMNGKMVVGKPLYVALAQRK 92
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 32/142 (22%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
L V + + +R + + Y + T + EK K N ++V+ I + L++ FS
Sbjct: 269 LFVGRAQAKAERKKILQHEYKDIFNTHM---EKFKASN-LYVKNLALCIDNDKLQELFSC 324
Query: 167 FGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
GKI S M + G RGF GFV F SPE + KA+ +NG
Sbjct: 325 SGKIVSAKVMRYDNGASRGF-------------------GFVCFSSPEEAKKALNALNGA 365
Query: 224 HVQGVKLKVSLAR----RQLKV 241
QG L V++A+ RQL +
Sbjct: 366 VFQGKSLYVAMAQCKRDRQLAL 387
>gi|428673104|gb|EKX74017.1| conserved hypothetical protein [Babesia equi]
Length = 359
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 148 IFVQGA--GISEEFLRQHFSIFGKICSVSMEVEK------GRGFVTFDSPESSDKAITDD 199
IFV G I+EE+ +++FS +G I S + V+K G GFV ++ E DKAI
Sbjct: 112 IFVGGVSENITEEYFKEYFSRYGHITSYNYIVDKDTNRPRGFGFVIYEKSEDCDKAIGPH 171
Query: 200 CARG 203
+ G
Sbjct: 172 ISLG 175
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 140 EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
EK K N ++++ G I EE L++ FS FG I S + +++ +G
Sbjct: 310 EKMKAAN-LYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQ-QGL-------------- 353
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA-RRQLKVAPINDAASSTTWSAI 256
GFV F +PE + +A++E+NG + L V++A RR+ ++A + S +
Sbjct: 354 -SKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQRREERMARLQAHFSQIQAPGL 412
Query: 257 ACHQS-LKGNH----KDKRHQVIYDDDIFGEEPP 285
S L G H + HQ+ + G PP
Sbjct: 413 PTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMPP 446
>gi|432852726|ref|XP_004067354.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 4
[Oryzias latipes]
Length = 494
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N + +EF L Q F FG + S + V D+A
Sbjct: 404 EGPEGCNLFIYH---LPQEFGDAELMQMFLPFGNVISAKVFV---------------DRA 445
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 446 TNQSKCFGFVSFDNPSSAQAAIQAMNGFQIGMKRLKVQLKR 486
>gi|327279532|ref|XP_003224510.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Anolis
carolinensis]
Length = 152
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G E+ L QHFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
GF+TF +PE + A+ +NG V G +++V A
Sbjct: 50 -GFITFANPEHASDAMRAMNGESVDGRQIRVDHA 82
>gi|326434197|gb|EGD79767.1| hypothetical protein PTSG_10752 [Salpingoeca sp. ATCC 50818]
Length = 328
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 16/78 (20%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++ E L++ FS++G++ ++ M +G G F +V +D PE +D
Sbjct: 92 VNSEHLKEIFSLYGRVVNIDMPTNRGGGSRHF----------------AYVEYDVPEDAD 135
Query: 215 KAITEVNGTHVQGVKLKV 232
KA+ ++G + G ++V
Sbjct: 136 KALEHMDGGQIDGQTIEV 153
>gi|281205541|gb|EFA79731.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 271
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 25/99 (25%)
Query: 145 GNTIFVQGAGIS--EEFLRQHFSIFGKI--CSVSME--VEKGRGFVTFDSPESSDKAITD 198
GN++ V G + +E L+ F+ FGKI C V ++ + RGF
Sbjct: 54 GNSLHVAGFSLKLKDEELKDKFTSFGKILECVVMVDPNTKISRGF--------------- 98
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
GF+TF S + +D+AI ++G+ + G +KVS ++R
Sbjct: 99 ----GFITFGSADEADEAIRIMDGSKIDGNVIKVSKSKR 133
>gi|47228429|emb|CAG05249.1| unnamed protein product [Tetraodon nigroviridis]
Length = 411
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 23/100 (23%)
Query: 139 NEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
N+ T++ G G++E+ +RQ FS FG I + + +KG FV F+S E++ AI
Sbjct: 187 NQSSPSNCTVYCGGVTTGLTEQIMRQTFSPFGHIMEIRVFPDKGYSFVRFNSHEAAAHAI 246
Query: 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 247 VS---------------------VNGTTIEGYVVKCYWGK 265
>gi|359067200|ref|XP_003586320.1| PREDICTED: CUGBP, Elav-like family member 5 [Bos taurus]
Length = 685
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 576 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 632
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 633 M---------------DRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKR 677
>gi|241670456|ref|XP_002411413.1| RNA recognition motif protein, putative [Ixodes scapularis]
gi|215504059|gb|EEC13553.1| RNA recognition motif protein, putative [Ixodes scapularis]
Length = 3850
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
+SE+FL + FS +G + +++ EKG V FDS E CA+
Sbjct: 440 VSEKFLSRTFSRYGPVSFAAIDREKGHALVYFDSLE---------CAQ------------ 478
Query: 215 KAITEVNGTHVQGVKLKVSLARRQLKVA 242
A+ E+ G + G KL+V A R+ + +
Sbjct: 479 HAVAEMRGRVLGGKKLQVDFASRECQTS 506
>gi|24762232|ref|NP_068757.2| CUGBP Elav-like family member 5 isoform 1 [Homo sapiens]
gi|402903694|ref|XP_003914695.1| PREDICTED: CUGBP Elav-like family member 5 [Papio anubis]
gi|74762534|sp|Q8N6W0.1|CELF5_HUMAN RecName: Full=CUGBP Elav-like family member 5; Short=CELF-5;
AltName: Full=Bruno-like protein 5; AltName:
Full=CUG-BP- and ETR-3-like factor 5; AltName:
Full=RNA-binding protein BRUNOL-5
gi|20380221|gb|AAH28101.1| Bruno-like 5, RNA binding protein (Drosophila) [Homo sapiens]
gi|119589733|gb|EAW69327.1| bruno-like 5, RNA binding protein (Drosophila), isoform CRA_a [Homo
sapiens]
gi|119589734|gb|EAW69328.1| bruno-like 5, RNA binding protein (Drosophila), isoform CRA_a [Homo
sapiens]
gi|123981490|gb|ABM82574.1| bruno-like 5, RNA binding protein (Drosophila) [synthetic
construct]
gi|123996323|gb|ABM85763.1| bruno-like 5, RNA binding protein (Drosophila) [synthetic
construct]
Length = 485
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 376 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 432
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 433 M---------------DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 477
>gi|47217530|emb|CAG02457.1| unnamed protein product [Tetraodon nigroviridis]
Length = 418
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
T++ G G++E+ +RQ FS FG I + + +KG FV F+S ES+ AI
Sbjct: 209 TVYCGGVSTGLTEQLMRQTFSPFGPIMEIRVFPDKGYSFVRFNSHESAAHAIV 261
>gi|167380673|ref|XP_001735408.1| cellular nucleic acid binding protein [Entamoeba dispar SAW760]
gi|165902631|gb|EDR28401.1| cellular nucleic acid binding protein, putative [Entamoeba dispar
SAW760]
Length = 390
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 19/92 (20%)
Query: 147 TIFVQGAGISEEF--LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
IFV+G S + L++ F FG I ++ +EK K I+ C GF
Sbjct: 164 CIFVKGFPNSWKIKDLKERFDNFGAI-KATILMEK--------------KGISKGC--GF 206
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V F++ E++ KA+ E+NG V+G +L+VS+A+
Sbjct: 207 VDFENEENAKKAVEEMNGRGVEGGELEVSMAK 238
>gi|338729124|ref|XP_003365829.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Equus
caballus]
Length = 135
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG SL RQ++V +A T A H
Sbjct: 50 -GFITFTNPEHASDAMRAMNGE---------SLDGRQIRVDHAGKSARGTRGGAFGAH 97
>gi|1899188|gb|AAC49850.1| DNA binding protein ACBF [Nicotiana tabacum]
Length = 428
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E LRQ F+ FG++ SV + KG GFV F S+ +AI
Sbjct: 296 TIFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAI 347
>gi|2708532|gb|AAB92518.1| putative RNA binding protein [Nicotiana tabacum]
Length = 482
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E LRQ F+ FG++ SV + KG GFV F S+ +AI
Sbjct: 350 TIFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAI 401
>gi|395831373|ref|XP_003788777.1| PREDICTED: CUGBP Elav-like family member 5 [Otolemur garnettii]
Length = 485
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 376 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 432
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 433 M---------------DRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKR 477
>gi|410052930|ref|XP_003953367.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 5
[Pan troglodytes]
Length = 484
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 375 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 431
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 432 M---------------DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 476
>gi|430813261|emb|CCJ29365.1| unnamed protein product [Pneumocystis jirovecii]
Length = 272
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 25/99 (25%)
Query: 145 GNTIFVQGAG--ISEEFLRQHFSIFGKI--CSVSME--VEKGRGFVTFDSPESSDKAITD 198
G +F+ G + E+ L + FS FG + CS+ + ++ RGF
Sbjct: 65 GTNLFISGIAPRMDEKELEEIFSRFGNVVKCSIVSDPYTKESRGF--------------- 109
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
GFVT +PE +DKAI NG G V ARR
Sbjct: 110 ----GFVTMATPEDADKAIEAANGQEYYGRVFSVEKARR 144
>gi|50508361|dbj|BAD30314.1| putative apoptosis-related RNA binding protein [Oryza sativa
Japonica Group]
gi|50510235|dbj|BAD31433.1| putative apoptosis-related RNA binding protein [Oryza sativa
Japonica Group]
gi|215687308|dbj|BAG91895.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 414
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 157 EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
+E L F FG+I S + +++ G C GFV++D+P S+ A
Sbjct: 348 DEDLANLFQEFGRILSTKVFIDRATG--------------VSKCF-GFVSYDTPASAQAA 392
Query: 217 ITEVNGTHVQGVKLKVSLAR 236
I +NG+ + G LKV L R
Sbjct: 393 IRRMNGSQIGGKMLKVQLKR 412
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSME---VEKGRGFVTFDSPE 190
P+ + G IF++ GI + L FS FG I C V+ + + KG GFV FDS E
Sbjct: 110 PSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEE 169
Query: 191 SSDKAI 196
++ KAI
Sbjct: 170 AAQKAI 175
>gi|449268059|gb|EMC78930.1| putative RNA-binding protein 19, partial [Columba livia]
Length = 922
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 145 GNTIFVQGAGI--SEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
G T+F++ +E+ LR+ FS G + C++S + +K ++
Sbjct: 723 GCTLFIKNLNFATTEDTLRETFSKVGAVKSCTISKKKDKAGALLSM-------------- 768
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV + PE + KA+ + G V G KL+V ++ R L+
Sbjct: 769 GFGFVEYKKPEGAQKALRRLQGCTVDGHKLEVKISERALR 808
>gi|408794570|ref|ZP_11206175.1| hypothetical protein LEP1GSC017_3646 [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461805|gb|EKJ85535.1| hypothetical protein LEP1GSC017_3646 [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 89
Score = 41.6 bits (96), Expect = 0.47, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 23/90 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSP 210
+ EE +RQ FS++G I + M E RGF F+T+ +P
Sbjct: 15 LKEENIRQIFSVYGVIQDLKMIHDRETGNFRGF-------------------AFITYANP 55
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
E +++A+T++NG V G LKV+ A + K
Sbjct: 56 EEAEEAVTQMNGQPVDGRNLKVTFAEDKRK 85
>gi|397496989|ref|XP_003819302.1| PREDICTED: CUGBP Elav-like family member 5 [Pan paniscus]
Length = 433
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 324 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 380
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 381 M---------------DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 425
>gi|85109011|ref|XP_962704.1| hypothetical protein NCU08034 [Neurospora crassa OR74A]
gi|28924315|gb|EAA33468.1| hypothetical protein NCU08034 [Neurospora crassa OR74A]
gi|39979161|emb|CAE85534.1| related to small nuclear ribonucleoprotein snRNP U1A [Neurospora
crassa]
Length = 247
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 158 EFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
E LR FS +G + + + KG+ FV FD PES+ AI D +GF F+ P
Sbjct: 28 EALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQAAI--DELQGFELFEKPMVVT 85
Query: 215 KAITEVNGTHVQ 226
A T + T +Q
Sbjct: 86 LARTRSDATVIQ 97
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSME---VEKGRGFVTFDSPE 190
P+ + G IF++ GI + L FS FG I C V+ + + KG GFV FDS E
Sbjct: 249 PSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEE 308
Query: 191 SSDKAI 196
++ KAI
Sbjct: 309 AAQKAI 314
>gi|359322160|ref|XP_854891.3| PREDICTED: CUGBP, Elav-like family member 5 [Canis lupus
familiaris]
Length = 485
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 376 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 432
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 433 M---------------DRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKR 477
>gi|325093450|gb|EGC46760.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H88]
Length = 579
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L F+ FGK+ V ++ +KG G+V F P KAI
Sbjct: 445 GVTEELLVAGFATFGKVVKVEIDKKKGFGYVDFAEPGGLAKAI 487
>gi|330801309|ref|XP_003288671.1| hypothetical protein DICPUDRAFT_152921 [Dictyostelium purpureum]
gi|325081293|gb|EGC34814.1| hypothetical protein DICPUDRAFT_152921 [Dictyostelium purpureum]
Length = 348
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 15/77 (19%)
Query: 160 LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219
L+Q FS +G + S + + DK GFV++D+ +S+ +AI E
Sbjct: 283 LKQLFSPYGNVVSSKVFI---------------DKNTQQSKCFGFVSYDNTQSAIQAIQE 327
Query: 220 VNGTHVQGVKLKVSLAR 236
+NG ++G KLKV+ R
Sbjct: 328 LNGRAIEGKKLKVNFKR 344
>gi|440290286|gb|ELP83712.1| ribonucleoprotein, putative [Entamoeba invadens IP1]
Length = 217
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFVT+++ E + KA+ E+NG V G ++ V ARR+
Sbjct: 64 GFVTYNTTEEAKKAVDELNGKEVDGFRIAVDFARRE 99
>gi|12746396|gb|AAK07476.1|AF329266_1 CUG-BP and ETR-3 like factor 5 [Homo sapiens]
Length = 481
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 376 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 432
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 433 M---------------DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 477
>gi|358413030|ref|XP_610805.5| PREDICTED: CUGBP, Elav-like family member 5 [Bos taurus]
Length = 562
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 453 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 509
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 510 M---------------DRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKR 554
>gi|344306484|ref|XP_003421917.1| PREDICTED: nucleolysin TIAR-like [Loxodonta africana]
Length = 504
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++++ +RQ FS FG+I + + EKG FV F + ES+ AI
Sbjct: 335 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS------ 388
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 389 ---------------VNGTTIEGHVVKCYWGK 405
>gi|332255740|ref|XP_003276989.1| PREDICTED: CUGBP Elav-like family member 5 [Nomascus leucogenys]
Length = 438
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 329 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 385
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 386 M---------------DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 430
>gi|225556833|gb|EEH05120.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 579
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L F+ FGK+ V ++ +KG G+V F P KAI
Sbjct: 445 GVTEELLVAGFATFGKVVKVEIDKKKGFGYVDFAEPGGLAKAI 487
>gi|241574282|ref|XP_002403075.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
gi|215502148|gb|EEC11642.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
Length = 364
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 23/82 (28%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
+ E L + F FG+I +S++ GF GFV FD P +D
Sbjct: 14 VRERDLERFFKGFGRIREISIK----NGF-------------------GFVEFDDPRDAD 50
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
A+ E+NG + G ++ V LAR
Sbjct: 51 DAVYELNGKDLMGDRVSVELAR 72
>gi|29436780|gb|AAH49453.1| Cugbp1 protein [Danio rerio]
Length = 534
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRL------APNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLL++ + E P+G N + +EF L Q F FG + S +
Sbjct: 425 LYSQSLLSQQNVSAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVISAKVF 481
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P SS AI +NG + +LKV L R
Sbjct: 482 I---------------DKQTNLSKCFGFVSYDNPVSSQAAIQSMNGFQIGMKRLKVQLKR 526
>gi|350580719|ref|XP_003123087.3| PREDICTED: CUGBP, Elav-like family member 5 [Sus scrofa]
Length = 444
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 335 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 391
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 392 M---------------DRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKR 436
>gi|449454734|ref|XP_004145109.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 404
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 23/102 (22%)
Query: 137 APNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDK 194
A NE TIFV A +++E LRQ F +G++ V + V K GFV F +D+
Sbjct: 256 AQNENDPNNTTIFVGNLDANVTDEHLRQVFGQYGELVHVKIPVGKRCGFVQF-----ADR 310
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+CA ++A+ +NGT + G +++S R
Sbjct: 311 ----NCA------------EEALRVLNGTQIGGQNIRLSWGR 336
>gi|195470186|ref|XP_002087389.1| GE16637 [Drosophila yakuba]
gi|194173490|gb|EDW87101.1| GE16637 [Drosophila yakuba]
Length = 4999
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 146 NTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N +++ G G +SE FL+ F+ FG + VS++ + V +D +++ A+ D
Sbjct: 740 NCVWIDGVGEKVSESFLQSQFTRFGTVTKVSIDRSRQLALVLYDQVQNAQAAVKD----- 794
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
+ GT ++G KL+V A R+ + A
Sbjct: 795 ----------------MRGTILRGRKLQVDFASRECQDA 817
>gi|297275765|ref|XP_002801068.1| PREDICTED: CUGBP Elav-like family member 5-like [Macaca mulatta]
Length = 473
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 364 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 420
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 421 M---------------DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 465
>gi|291407441|ref|XP_002719942.1| PREDICTED: RNA binding motif protein 3 [Oryctolagus cuniculus]
Length = 155
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+F+ G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFIGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG SL RQ++V +A T A H
Sbjct: 50 -GFITFTNPEHASDAMRAMNGE---------SLDGRQIRVDHAGKSARGTRGGAFGAH 97
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 16/84 (19%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I +E LR+ FS +G I S + P+ + GFV F SP+ +
Sbjct: 317 IDDEKLREIFSEYGTIVSCKV----------MRDPQGQSRG------SGFVAFSSPDEAT 360
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
+A+TE+NG V L V+LA+R+
Sbjct: 361 RAVTEMNGKMVGSKPLYVALAQRK 384
>gi|302845022|ref|XP_002954050.1| hypothetical protein VOLCADRAFT_121254 [Volvox carteri f.
nagariensis]
gi|300260549|gb|EFJ44767.1| hypothetical protein VOLCADRAFT_121254 [Volvox carteri f.
nagariensis]
Length = 344
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 14/69 (20%)
Query: 148 IFVQGAG-ISEEFLRQHFSIFGKIC-SVSME---VEKGRGFVTFDSPESSDKAI------ 196
IFV G G I++E LR HFS +G+I SV M V +G GFVTF P S +K +
Sbjct: 151 IFVGGTGDITDEELRNHFSQYGEIQDSVIMRKDGVTRGFGFVTFADPISVEKVLVMRQVI 210
Query: 197 ---TDDCAR 202
T DC R
Sbjct: 211 RDKTVDCKR 219
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I V + E+G +GF G + F SPE
Sbjct: 304 IDDEKLRNEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 344
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L ++LA+R
Sbjct: 345 ATKAMTEMNGRILGSKPLSIALAQRH 370
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFD 208
G + +E L+ FS +GK SV + + K +GF GFV+FD
Sbjct: 198 GGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF-------------------GFVSFD 238
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
S E++ KA+ E+NG + G + V A++++
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 269
>gi|440912153|gb|ELR61745.1| CUGBP Elav-like family member 5, partial [Bos grunniens mutus]
Length = 398
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 289 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 345
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 346 M---------------DRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKR 390
>gi|410922589|ref|XP_003974765.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Takifugu rubripes]
Length = 386
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
T++ G G++E+ +RQ FS FG I + + +KG FV F+S ES+ AI
Sbjct: 204 TVYCGGVSTGLTEQLMRQTFSPFGPIMEIRVFPDKGYSFVRFNSHESAAHAI 255
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
+ EE + F+ FG I S M EKG +GF GFV F SP+
Sbjct: 274 MDEEKVTAEFAAFGTITSTKIMRDEKGASKGF-------------------GFVCFSSPD 314
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG L VSLA+R+
Sbjct: 315 EATKAVTELNGKMFGQKPLYVSLAQRK 341
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPE 190
P+ + G IF++ GI + L FS FG I S + + KG GFV FD+ E
Sbjct: 104 PSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEE 163
Query: 191 SSDKAI 196
S+ KAI
Sbjct: 164 SAQKAI 169
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I ++ L+Q FS FG I S + P + GFV F +PE +
Sbjct: 317 IGDDRLKQLFSPFGTITSCKV----------MRDPNGISRG------SGFVAFSTPEEAS 360
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
KA+ E+NG V L V+LA+R+
Sbjct: 361 KALMEMNGKMVVSKPLYVALAQRK 384
>gi|195386414|ref|XP_002051899.1| GJ24602 [Drosophila virilis]
gi|194148356|gb|EDW64054.1| GJ24602 [Drosophila virilis]
Length = 5779
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 146 NTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N +++ G G +SE FL+ F+ FG + VS++ + V +D +++ A+ D
Sbjct: 715 NCVWIDGVGEKVSETFLQSQFTRFGTVTKVSIDRTRQLALVLYDQVQNAQAAVKD----- 769
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
+ GT ++G KL+V A R+ + A
Sbjct: 770 ----------------MRGTIMRGRKLQVDFASRECQDA 792
>gi|449502234|ref|XP_002199924.2| PREDICTED: CUGBP Elav-like family member 1 [Taeniopygia guttata]
Length = 485
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 376 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 432
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 433 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 477
>gi|82621158|gb|ABB86267.1| DNA binding protein ACBF-like [Solanum tuberosum]
Length = 372
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E LRQ F+ FG++ SV + KG GFV F S+ +AI
Sbjct: 245 TIFVGGLDSDVTDEELRQSFTQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAI 296
>gi|15230291|ref|NP_188544.1| RNA-binding protein 47B [Arabidopsis thaliana]
gi|122246579|sp|Q0WW84.1|RB47B_ARATH RecName: Full=Polyadenylate-binding protein RBP47B;
Short=Poly(A)-binding protein RBP47B; AltName:
Full=RNA-binding protein 47B; Short=AtRBP47B
gi|110741040|dbj|BAE98614.1| putative nuclear acid binding protein [Arabidopsis thaliana]
gi|111074446|gb|ABH04596.1| At3g19130 [Arabidopsis thaliana]
gi|332642675|gb|AEE76196.1| RNA-binding protein 47B [Arabidopsis thaliana]
Length = 435
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +E LRQ FS FG++ SV + V KG GFV F +S++ AI
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAI 373
>gi|255538402|ref|XP_002510266.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223550967|gb|EEF52453.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 443
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G +++E L+Q FS +G+I SV + V KG GFV F S ++++A+
Sbjct: 313 TIFVGGLDPNVTDEDLKQPFSQYGEIVSVKIPVGKGCGFVQFASRSNAEEAL 364
>gi|449446975|ref|XP_004141245.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
gi|449498692|ref|XP_004160607.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
Length = 426
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G +++E LRQ FS +G+I SV + V KG GFV F + +++A+
Sbjct: 293 TIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEAL 344
>gi|405120315|gb|AFR95086.1| hypothetical protein CNAG_01060 [Cryptococcus neoformans var.
grubii H99]
Length = 260
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 25/106 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEV----EKGRGFVTFDSPESSDKAITD 198
GN + V G ++E L FS GK+ V + V ++ RGF
Sbjct: 69 GNNLHVSGLSRAVTERQLEDLFSQIGKVAKVQIMVDPHSQESRGF--------------- 113
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPI 244
GFV +S E + AI +++G +V+G + V+ ARR P
Sbjct: 114 ----GFVMMESREEAQAAIDQLSGQNVEGKSITVAHARRGRARTPT 155
>gi|442754133|gb|JAA69226.1| Putative alternative splicing factor srp55/b52/srp75 rrm
superfamily [Ixodes ricinus]
Length = 363
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 23/82 (28%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
+ E L + F FG+I +S++ GF GFV FD P +D
Sbjct: 14 VRERDLERFFKGFGRIREISIK----NGF-------------------GFVEFDDPRDAD 50
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
A+ E+NG + G ++ V LAR
Sbjct: 51 DAVYELNGKDLMGDRVSVELAR 72
>gi|18858491|ref|NP_571688.1| CUGBP Elav-like family member 1 [Danio rerio]
gi|82247731|sp|Q9IBD0.1|CELF1_DANRE RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=EDEN-BP/Bruno-like protein; AltName:
Full=RNA-binding protein BRUNOL-2
gi|7670538|dbj|BAA95119.1| brul [Danio rerio]
Length = 501
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRL------APNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLL++ + E P+G N + +EF L Q F FG + S +
Sbjct: 392 LYSQSLLSQQNVSAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVISAKVF 448
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P SS AI +NG + +LKV L R
Sbjct: 449 I---------------DKQTNLSKCFGFVSYDNPVSSQAAIQSMNGFQIGMKRLKVQLKR 493
>gi|21618243|gb|AAM67293.1| nuclear acid binding protein, putative [Arabidopsis thaliana]
Length = 392
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +E LRQ FS FG++ SV + V KG GFV F +S++ AI
Sbjct: 279 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAI 330
>gi|387015318|gb|AFJ49778.1| CUGBP Elav-like family member 1-like [Crotalus adamanteus]
Length = 511
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 402 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 458
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 459 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 503
>gi|291404907|ref|XP_002718787.1| PREDICTED: TIA-1 related protein-like [Oryctolagus cuniculus]
Length = 450
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++++ +RQ FS FG+I + + EKG FV F + ES+ AI
Sbjct: 281 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS------ 334
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
VNGT ++G +K +
Sbjct: 335 ---------------VNGTTIEGHVVKCYWGK 351
>gi|116783558|gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 25/95 (26%)
Query: 148 IFVQGA--GISEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G G+ ++ LR+ F+ FG + + E + RGF
Sbjct: 41 VFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGF------------------ 82
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFVTF SP+ ++ A+ ++G +QG ++V++A+
Sbjct: 83 -GFVTFASPDEANAAVEAMDGKDLQGRSIRVNIAQ 116
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I +E LRQ F FG I S + +K D PE S GFV F PE +
Sbjct: 319 IDDEKLRQTFEQFGTITSAKVMRDK-------DRPEVSK-------GFGFVCFAQPEEAT 364
Query: 215 KAITEVNGTHVQGVKLKVSL-----ARRQLKVA 242
+A+T +NG V + V+L RRQ++ A
Sbjct: 365 RAVTAMNGQMVGTKPIYVALHQPIEIRRQMQAA 397
>gi|60302694|ref|NP_001012539.1| CUGBP Elav-like family member 1 [Gallus gallus]
gi|60098733|emb|CAH65197.1| hypothetical protein RCJMB04_7f23 [Gallus gallus]
Length = 485
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 376 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 432
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 433 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 477
>gi|393212943|gb|EJC98441.1| hypothetical protein FOMMEDRAFT_129355 [Fomitiporia mediterranea
MF3/22]
Length = 615
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 23/117 (19%)
Query: 120 RTPVDKKVYGESLLT----RLAPNEKP-KGGNTIFVQ--GAGISEEFLRQHFSIFGKICS 172
R P+ G S++T + AP +P + G T+FV GI++ FL+Q G + S
Sbjct: 17 RPPMPSYGQGPSMMTLAQRQQAPPARPAQEGITLFVGSIAGGITDSFLQQLLGTCGTLVS 76
Query: 173 VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVK 229
F +P + + GF TFDSPES+ +AI ++G + G++
Sbjct: 77 ----------FKRLITPANKPQGF------GFATFDSPESAARAIKLLDGVELPGME 117
>gi|13785947|gb|AAK39523.1| RNA-binding motif protein 3 [Rattus norvegicus]
Length = 127
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG SL RQ++V +A T A H
Sbjct: 50 -GFITFTNPEHASDAMRAMNGE---------SLDGRQIRVDHAGKSARGTRGGAFGAH 97
>gi|326920382|ref|XP_003206453.1| PREDICTED: CUGBP Elav-like family member 1-like [Meleagris
gallopavo]
Length = 487
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 378 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 434
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 435 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 479
>gi|145306680|gb|ABP57104.1| CUG binding protein 1 [Gallus gallus]
Length = 487
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 378 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 434
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 435 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 479
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
ISEE RQ F FG+I S ++ + K RGF GFV + + +
Sbjct: 240 ISEEEFRQMFEKFGEITSATLSRDQEGKSRGF-------------------GFVNYSTHD 280
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
S+ A+ E+N V+G KL V A+++
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKK 307
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+S K + GFV F SP+ + KA+TE+N + G L V+LA+R+
Sbjct: 413 KSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRK 461
>gi|426386618|ref|XP_004059780.1| PREDICTED: CUGBP Elav-like family member 5 isoform 2 [Gorilla
gorilla gorilla]
Length = 370
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 261 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 317
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 318 M---------------DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 362
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 16/84 (19%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
+ +E LR+ F+ +G I S + P+ + GFV F SPE +
Sbjct: 321 VDDEKLRELFADYGTITSCKV----------MRDPQGQSRG------SGFVAFSSPEEAT 364
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
+A+TE+NG V L V+LA+R+
Sbjct: 365 RAVTEMNGKMVGSKPLYVALAQRK 388
>gi|152013389|sp|Q5F3T7.2|CELF1_CHICK RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=RNA-binding protein BRUNOL-2
Length = 489
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 380 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 436
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 437 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 481
>gi|444723044|gb|ELW63709.1| putative RNA-binding protein 19 [Tupaia chinensis]
Length = 1033
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 145 GNTIFVQGAGI--SEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
G T+F++ +EE LR+ FS G + CS+S + K ++
Sbjct: 833 GCTLFIKNLNFDTAEETLRKVFSKVGMVKSCSISRKKNKAGALLSM-------------- 878
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
GFV + PE + KA+ ++ G V G KL+V ++ R K A
Sbjct: 879 GFGFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPA 920
>gi|403356826|gb|EJY78018.1| pre-mRNA-splicing factor RBM22 [Oxytricha trifallax]
Length = 434
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 122 PVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG---ISEEFLRQHFSIFGKICSVSMEVE 178
PV KK+ T + + TIF+ G I+EE L++ FGKI V + +
Sbjct: 214 PVAKKILDRVKETNIPSPPEDMNITTIFIGGVNDDSINEETLKEQLESFGKIKGVKLIHK 273
Query: 179 KGRGFVTFDSPESSDKAITDDCARGFVT 206
+G FV F + ES++KA+ R FV
Sbjct: 274 QGCAFVCFHARESAEKAVEAIFDRFFVN 301
>gi|380091235|emb|CCC11092.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 232
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 157 EEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
+E LR FS +G + + + KG+ FV FD PES+ AI + +GF F+ P
Sbjct: 27 KEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQAAIEE--LQGFELFEKPMLV 84
Query: 214 DKAITEVNGTHVQ 226
A T + T +Q
Sbjct: 85 ALAKTRSDATVIQ 97
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
IS+E L++ FS +G I S P K GFV F +PE +
Sbjct: 1 ISDEKLKELFSPYGTITSCK----------VMRDPSGVSKG------SGFVAFSNPEEAS 44
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
+A++E+NG V L V+LA+R+
Sbjct: 45 RALSEMNGKMVVSKPLYVALAQRK 68
>gi|392595839|gb|EIW85162.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 151
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 31/102 (30%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSM---------EVE-KGRGFVTFDSPESSDK 194
TIF+ G G I E L + FS FG I V + + E K RGF
Sbjct: 10 TIFIGGIGDDIDENALYETFSPFGDIIEVQLPSAATNPNQQTEAKHRGF----------- 58
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFVTF SP + AI ++ ++G LKV+LAR
Sbjct: 59 --------GFVTFGSPADAQDAIDNMDLNELRGRVLKVNLAR 92
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 24/88 (27%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSP 210
I +E LR+ FS++G I S K +TD+ R GFV F SP
Sbjct: 298 IDDERLRKDFSMYGTITSA--------------------KVMTDEEGRSKGFGFVCFISP 337
Query: 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+NG + L V+LA+R+
Sbjct: 338 NEATCAVTELNGRVIGSKPLYVALAQRK 365
>gi|213406019|ref|XP_002173781.1| RNA-binding post-transcriptional regulator csx1
[Schizosaccharomyces japonicus yFS275]
gi|212001828|gb|EEB07488.1| RNA-binding post-transcriptional regulator csx1
[Schizosaccharomyces japonicus yFS275]
Length = 680
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
T+FV G +G +E+ L HFS FG I ++ + KG GFV + +++KAIT
Sbjct: 324 TVFVGGLFSGATEKDLFYHFSPFGNILNIKIPPGKGCGFVQYTEKAAAEKAIT 376
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I +E LR+ FS++G I S M E+GR GF GFV F SP
Sbjct: 298 IDDERLRKDFSMYGTITSAKVMTDEEGRSKGF-------------------GFVCFISPN 338
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ A+TE+NG + L V+LA+R+
Sbjct: 339 EATCAVTELNGRVIGSKPLYVALAQRK 365
>gi|149632715|ref|XP_001509363.1| PREDICTED: CUGBP Elav-like family member 1 [Ornithorhynchus
anatinus]
Length = 513
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 404 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 460
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 461 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 505
>gi|449274607|gb|EMC83685.1| CUG-BP- and ETR-3-like factor 1 [Columba livia]
Length = 515
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 406 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 462
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 463 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 507
>gi|432852722|ref|XP_004067352.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 2
[Oryzias latipes]
Length = 493
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 129 GESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFV 184
G+S TR + P+G N + +EF L Q F FG + S + V
Sbjct: 392 GKSEQTRPPKIKGPEGCNLFIYH---LPQEFGDAELMQMFLPFGNVISAKVFV------- 441
Query: 185 TFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 442 --------DRATNQSKCFGFVSFDNPSSAQAAIQAMNGFQIGMKRLKVQLKR 485
>gi|350538645|ref|NP_001233728.1| RNA-binding motif 3 [Cricetulus griseus]
gi|189170130|gb|ACD80090.1| RNA-binding motif 3 [Cricetulus griseus]
Length = 156
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG + G RQ++V +A + A H
Sbjct: 50 -GFITFTNPEHASDAMRAMNGESLDG---------RQIRVDHAGKSARGSRGGAFGAH 97
>gi|240277371|gb|EER40879.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H143]
Length = 452
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L F+ FGK+ V ++ +KG G+V F P KAI
Sbjct: 318 GVTEELLVAGFATFGKVVKVEIDKKKGFGYVDFAEPGGLAKAI 360
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I V + E+G +GF G + F SPE
Sbjct: 304 IDDEKLRNEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 344
Query: 213 SDKAITEVNGTHVQGVKLKVSLARR 237
+ KA+TE+NG + L ++LA+R
Sbjct: 345 ATKAMTEMNGRILGSKPLSIALAQR 369
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFD 208
G + +E L+ FS +GK SV + + K +GF GFV+FD
Sbjct: 198 GGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF-------------------GFVSFD 238
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
S E++ KA+ E+NG + G + V A++++
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 269
>gi|164659882|ref|XP_001731065.1| hypothetical protein MGL_2064 [Malassezia globosa CBS 7966]
gi|159104963|gb|EDP43851.1| hypothetical protein MGL_2064 [Malassezia globosa CBS 7966]
Length = 227
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 126 KVYGESLLTRLAPNEKP--KGGNTIFVQG--AGISEEFLRQHFSIFGKICSV-------S 174
K+YG+ + ++ NEK G +FV +G+ E L F+ FG I +
Sbjct: 76 KLYGKPIRVNMSSNEKQVVDIGANLFVGNLDSGVDERLLYDTFATFGGILGAPRIARDPT 135
Query: 175 MEVEKGRGFVTFDSPESSDKAI 196
K GFV+FDS ES+D AI
Sbjct: 136 TNESKNYGFVSFDSFESADGAI 157
>gi|327259665|ref|XP_003214656.1| PREDICTED: CUGBP Elav-like family member 1-like [Anolis
carolinensis]
Length = 514
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 405 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 461
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 462 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 506
>gi|154270398|ref|XP_001536054.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409981|gb|EDN05369.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 542
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G++EE L F+ FGK+ V ++ +KG G+V F P KAI
Sbjct: 408 GVTEELLVAGFATFGKVVKVEIDKKKGFGYVDFAEPGGLAKAI 450
>gi|148694801|gb|EDL26748.1| RD RNA-binding protein, isoform CRA_d [Mus musculus]
Length = 149
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|9280669|gb|AAF86538.1|AC002560_31 F21B7.8 [Arabidopsis thaliana]
Length = 440
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Query: 142 PKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
P G N +F+ I EF L F FGK+ S + V+K G
Sbjct: 338 PAGAN-LFIYN--IPREFEDQELAATFQPFGKVLSAKVFVDKATGI-------------- 380
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
C GF+++DS ++ AI +NG + G KLKV L R
Sbjct: 381 SKCF-GFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 418
>gi|339246059|ref|XP_003374663.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972148|gb|EFV55839.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 427
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 193 DKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
DK GF+ + +PES+ KAI +NG +Q K+KVS AR
Sbjct: 53 DKVTGQSLGYGFINYVNPESAAKAIERLNGLGLQSKKMKVSYAR 96
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 29/107 (27%)
Query: 139 NEKPKG----GNTIFVQGA--GISEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDS 188
NEKP G N +FV G + L Q FS GK+ + E + RGF
Sbjct: 205 NEKPSGNYNSANRVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGF----- 259
Query: 189 PESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
GFVT SP+ ++AI+ ++G+ + G ++KV+LA
Sbjct: 260 --------------GFVTLSSPQEIEEAISSLDGSDMDGRQIKVTLA 292
>gi|298714689|emb|CBJ27614.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 473
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 23/82 (28%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG----RGFVTFDSPESSDKAITDDCARGFVTFDSP 210
++ E L + FS FG + S + VEK RGF GFV++D+
Sbjct: 172 MTNEALFRLFSKFGNVISARIMVEKATGRSRGF-------------------GFVSYDNR 212
Query: 211 ESSDKAITEVNGTHVQGVKLKV 232
+S++KAI+++NG ++ +LKV
Sbjct: 213 DSAEKAISQMNGYQIEHKRLKV 234
>gi|388515619|gb|AFK45871.1| unknown [Medicago truncatula]
Length = 270
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 25/106 (23%)
Query: 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK----GRGFVTFDSPESSDKAITD 198
GNT++V G + +++ L HFS GK+ S + VE RGF
Sbjct: 61 GNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFA-------------- 106
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPI 244
FVT DS E +++ I +N + ++G + V +RR+ P
Sbjct: 107 -----FVTMDSHEDAERCIKHLNQSVLEGRYITVERSRRKRARTPT 147
>gi|357517877|ref|XP_003629227.1| ELAV-like protein [Medicago truncatula]
gi|355523249|gb|AET03703.1| ELAV-like protein [Medicago truncatula]
Length = 270
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 25/106 (23%)
Query: 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK----GRGFVTFDSPESSDKAITD 198
GNT++V G + +++ L HFS GK+ S + VE RGF
Sbjct: 61 GNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFA-------------- 106
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPI 244
FVT DS E +++ I +N + ++G + V +RR+ P
Sbjct: 107 -----FVTMDSHEDAERCIKHLNQSVLEGRYITVERSRRKRARTPT 147
>gi|212722984|ref|NP_001132004.1| uncharacterized protein LOC100193409 [Zea mays]
gi|194693170|gb|ACF80669.1| unknown [Zea mays]
Length = 422
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 141 KPKGGN----TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDK 194
+P GG+ T+FV G +SEE LRQ FS +G+I SV + V K GFV F ++++
Sbjct: 279 RPDGGDLTNTTVFVGGLDPDVSEEDLRQAFSQYGEISSVKIPVGKQCGFVQFAQRKNAED 338
Query: 195 AI 196
A+
Sbjct: 339 AL 340
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 22/85 (25%)
Query: 157 EEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
+E LR+ F+ FG I S M G RGF GFV + PE +
Sbjct: 343 DERLREEFAPFGAITSCKIMRAPSGVSRGF-------------------GFVCYSVPEEA 383
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
+KA++E+NG + L V+LA+R+
Sbjct: 384 NKAVSEMNGKMLDNRPLYVALAQRK 408
>gi|296235404|ref|XP_002762884.1| PREDICTED: putative RNA-binding protein 3 [Callithrix jacchus]
Length = 159
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG SL RQ++V +A T A H
Sbjct: 50 -GFITFTNPEHASVAMRAMNGE---------SLDGRQIRVDHAGKSARGTRGGAFGVH 97
>gi|328876647|gb|EGG25010.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 748
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSD 193
P ++ IFV+ + L FS +G I S +E EKG +G+
Sbjct: 212 PTKRKSNVGNIFVKNLEKNVDNALLFDTFSTYGNILSCKIEYEKGISKGY---------- 261
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQG 227
G+V F++ ESS++AI +VNGT + G
Sbjct: 262 ---------GYVHFENQESSEQAILKVNGTILLG 286
>gi|75334879|sp|Q9LEB3.1|RBP47_NICPL RecName: Full=Polyadenylate-binding protein RBP47;
Short=Poly(A)-binding protein RBP47; AltName:
Full=RNA-binding protein 47; Short=NplRBP47
gi|9663769|emb|CAC01238.1| RNA Binding Protein 47 [Nicotiana plumbaginifolia]
Length = 428
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E LRQ F+ FG++ SV + KG GFV F S+ +AI
Sbjct: 296 TIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAI 347
>gi|15220241|ref|NP_175181.1| RNA-binding protein 47C' [Arabidopsis thaliana]
gi|75337808|sp|Q9SX80.1|R47CP_ARATH RecName: Full=Polyadenylate-binding protein RBP47C';
Short=Poly(A)-binding protein RBP47C'; AltName:
Full=RNA-binding protein 47C'; Short=AtRBP47C prime;
Short=AtRBP47C'
gi|5668811|gb|AAD46037.1|AC007519_22 Contains 3 PF|00076 RNA recognition motif domains. EST gb|T20424
comes from this gene [Arabidopsis thaliana]
gi|110743035|dbj|BAE99410.1| hypothetical protein [Arabidopsis thaliana]
gi|124301030|gb|ABN04767.1| At1g47500 [Arabidopsis thaliana]
gi|332194057|gb|AEE32178.1| RNA-binding protein 47C' [Arabidopsis thaliana]
Length = 434
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E L+Q FS FG+I SV + V KG GFV F + ++++A+
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEAL 358
>gi|82621116|gb|ABB86246.1| DNA-binding protein-like [Solanum tuberosum]
Length = 423
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
T+FV G + +++E LRQ FS FG + SV + KG GFV F +++ AI
Sbjct: 292 TVFVGGLDSDVTDEELRQSFSQFGNVVSVKIPAGKGCGFVQFSERSAAEDAI 343
>gi|426245410|ref|XP_004016504.1| PREDICTED: CUGBP Elav-like family member 1 [Ovis aries]
Length = 486
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 377 LYNQSLLTQQSVGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 433
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 434 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 478
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
SE+FLRQ F FG+I + + +KG F+ F+S ES+ +AI
Sbjct: 227 SEDFLRQAFDEFGEIVDIRLFKDKGYAFIKFNSKESACRAIV 268
>gi|343432668|ref|NP_001230348.1| RNA binding motif (RNP1, RRM) protein 3 [Sus scrofa]
Length = 156
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 25/94 (26%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
GF+TF +PE + A+ +NG + G +++V A
Sbjct: 50 -GFITFTNPEHASNAMRAMNGESLDGRQIRVDHA 82
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 187 DSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
DS +++K + GFV F +P+ + KA+TE+N V G L V+LA+R+
Sbjct: 419 DSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRK 470
>gi|397635517|gb|EJK71891.1| hypothetical protein THAOC_06625 [Thalassiosira oceanica]
Length = 389
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 26/105 (24%)
Query: 135 RLAPNEKPKGGNTIFVQ----GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPE 190
R + E + +T++V+ I++ +R F +G+I SV M +KG
Sbjct: 228 RESKGENERATSTLYVRFREGQNAITQGDIRDKFYSYGEISSVRMHQDKG---------- 277
Query: 191 SSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
FV F SP+++ AIT NG+ + G K+KV+ A
Sbjct: 278 ------------AFVEFTSPQATQHAITSANGSIICGRKIKVNWA 310
>gi|356574477|ref|XP_003555373.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
[Glycine max]
Length = 481
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++V G A ++E+ LR HF G+I S+ M +++ FVT+ + E ++KA
Sbjct: 229 TLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKA--------- 279
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSL 262
+ E S+K + ++G++LK+ R Q P +D + A H L
Sbjct: 280 ----AEELSNKLV-------IKGLRLKLMWGRPQTS-KPESDGSDQARPQASVAHSGL 325
>gi|167376798|ref|XP_001734154.1| 29 kDa ribonucleoprotein B, chloroplast precursor [Entamoeba dispar
SAW760]
gi|165904519|gb|EDR29735.1| 29 kDa ribonucleoprotein B, chloroplast precursor, putative
[Entamoeba dispar SAW760]
Length = 229
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 22/83 (26%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
+EE L+ HF FGKI + V +G RGF FV +++ E +
Sbjct: 14 TEENLKTHFESFGKIKEAKLMVFRGYSRGFA-------------------FVEYETEEDA 54
Query: 214 DKAITEVNGTHVQGVKLKVSLAR 236
KA+ NG +G KLKV +AR
Sbjct: 55 KKAVA-ANGVEFEGRKLKVEIAR 76
>gi|355715984|gb|AES05464.1| RD RNA binding protein [Mustela putorius furo]
Length = 208
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I K GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIKAETKNS---GFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|297301957|ref|XP_001098541.2| PREDICTED: nucleolysin TIAR isoform 5 [Macaca mulatta]
Length = 506
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++++ +RQ FS FG+I + + EKG F
Sbjct: 337 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG---------------------YSF 375
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V F + ES+ AI VNGT ++G +K +
Sbjct: 376 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 407
>gi|242005325|ref|XP_002423520.1| protein elav, putative [Pediculus humanus corporis]
gi|212506634|gb|EEB10782.1| protein elav, putative [Pediculus humanus corporis]
Length = 373
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEK-GRGFVTFDSPESSDKA--------ITDDCARGFV 205
+++E +R FS G++ S + +K G F+ F E I GFV
Sbjct: 52 MTQEEIRSLFSSIGEVESCKLIRDKAGLTFLLFFRIEMGGGGRERGRINRILFSLGYGFV 111
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ PE ++KAI +NG +Q +KVS AR
Sbjct: 112 NYQRPEDAEKAINTLNGLRLQNKTIKVSFAR 142
>gi|143346991|gb|ABO93208.1| Elav [Platynereis dumerilii]
Length = 361
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
+++E +R FS G++ S + +K + +SS + GFV + PE ++
Sbjct: 53 MTQEEIRSLFSSIGEVESCKLIRDKA-------TDQSSGTSSCQSLGYGFVNYKRPEDAE 105
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
KAI +NG +Q +KVS AR
Sbjct: 106 KAINTLNGLRLQNKTIKVSYAR 127
>gi|390352375|ref|XP_003727886.1| PREDICTED: uncharacterized protein LOC100892519 [Strongylocentrotus
purpuratus]
Length = 440
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 137 APNEKPKGG----NTIFVQGAGI---SEEFLRQHFSIFG-----KICSVSMEVEKGRGFV 184
APN P+ G N IFV G S+ LR FS FG KI + V KG GF+
Sbjct: 27 APN-APRYGTIIPNRIFVGGIAFNQTSDAELRNFFSAFGHVKEAKIIADRAGVSKGYGFI 85
Query: 185 TFDSPESSDKAITDDC 200
TF++PE + + + D
Sbjct: 86 TFETPEEAHRILKDQA 101
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 185 TFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
T D P+S + + GFV F++PE + KA+T++N V L V+LA+R+
Sbjct: 415 TEDKPKSEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRK 468
>gi|355704773|gb|EHH30698.1| RNA-binding motif protein 3 [Macaca mulatta]
Length = 157
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 34/110 (30%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASST 251
GF+TF +PE + A+ +NG + G RQ++VA + +A T
Sbjct: 50 -GFITFTNPEHASVAMRAMNGESLDG---------RQIRVAHVGKSARET 89
>gi|149027992|gb|EDL83443.1| rCG38266, isoform CRA_c [Rattus norvegicus]
Length = 172
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I V + E+GR GF G + F SPE
Sbjct: 304 IDDEKLRREFSSFGSISRVKVMKEEGRSKGF-------------------GLICFSSPEE 344
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWS 254
+ +A+TE+NG + L ++LA+ +V + ++ T S
Sbjct: 345 ATRAMTEMNGRILGSKPLNIALAQSLQQVXGMLVISAXTVLS 386
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 187 DSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
DS +++K + GFV F +P+ + KA+TE+N V G L V+LA+R+
Sbjct: 419 DSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRK 470
>gi|348549848|ref|XP_003460745.1| PREDICTED: CUGBP Elav-like family member 5-like [Cavia porcellus]
Length = 424
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 315 TPIAHSVPQPPPLLQQRQREGPEGCNLFIYH---LPQEFGDMELTQMFLPFGNIISSKVF 371
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 372 M---------------DRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKR 416
>gi|297791101|ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309270|gb|EFH39694.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 341
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 191 SSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ------LKVAPI 244
++ ++++ GFV F +PE + +AITE+NG + L V+LA+R+ L++ P+
Sbjct: 98 TTHRSLSLSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDCKARLQMRPV 157
Query: 245 N 245
N
Sbjct: 158 N 158
>gi|281353659|gb|EFB29243.1| hypothetical protein PANDA_006181 [Ailuropoda melanoleuca]
Length = 148
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 34/118 (28%)
Query: 148 IFVQGAGIS--EEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITDDCA 201
+FV G + E+ L HFS FG I V + E ++ RGF
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGF------------------ 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACH 259
GF+TF +PE + A+ +NG + G RQ++V +A T A H
Sbjct: 50 -GFITFTNPEHASDAMRAMNGESLDG---------RQIRVDHAGKSARGTRGGAYGAH 97
>gi|218200205|gb|EEC82632.1| hypothetical protein OsI_27223 [Oryza sativa Indica Group]
gi|222637626|gb|EEE67758.1| hypothetical protein OsJ_25469 [Oryza sativa Japonica Group]
Length = 497
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 157 EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
+E L F FG+I S + +++ G C GFV++D+P S+ A
Sbjct: 431 DEDLANLFQEFGRILSTKVFIDRATG--------------VSKCF-GFVSYDTPASAQAA 475
Query: 217 ITEVNGTHVQGVKLKVSLAR 236
I +NG+ + G LKV L R
Sbjct: 476 IRRMNGSQIGGKMLKVQLKR 495
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 187 DSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
D+ + +DK + GFV F +P+ + KA+TE+N V G L V+LA+R+
Sbjct: 420 DTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,727,278,365
Number of Sequences: 23463169
Number of extensions: 197627954
Number of successful extensions: 467032
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 1455
Number of HSP's that attempted gapping in prelim test: 460727
Number of HSP's gapped (non-prelim): 5617
length of query: 298
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 157
effective length of database: 9,050,888,538
effective search space: 1420989500466
effective search space used: 1420989500466
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 76 (33.9 bits)