BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15187
(298 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92204|NELFE_DROME Negative elongation factor E OS=Drosophila melanogaster GN=Nelf-E
PE=1 SV=1
Length = 280
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 168/271 (61%), Gaps = 35/271 (12%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+PEPE +S TLKRP +A+DAREVARKL+KSGAI P ++ + +Q FKRP+G ER
Sbjct: 37 PKPEPE---SSLTLKRPTDARDAREVARKLIKSGAI-PAIQKQTKQDQTSFKRPKGQERA 92
Query: 77 LTETDRSTVSAYQPFSAIQPE------DSEPVDSKPKFLKVSKR-ETNDDRTPVDKKVYG 129
T +TV++YQPFS+ Q + SE + +P+ + + T DR +++
Sbjct: 93 KRSTSETTVASYQPFSSTQNDVAQETIISEIIKEEPRRQNLYQHFATERDR---EERGMP 149
Query: 130 ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSP 189
E + A EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK
Sbjct: 150 EKVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEK---------- 199
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAAS 249
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ PINDA+S
Sbjct: 200 -----------SRGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASS 248
Query: 250 STTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
S WS+IA +S KG+HKD R V YD+D
Sbjct: 249 SAVWSSIAASKSQKGSHKDHREMVQYDEDFL 279
>sp|Q95ZE9|NELFE_DROVI Negative elongation factor E OS=Drosophila virilis GN=Nelf-E PE=3
SV=1
Length = 281
Score = 197 bits (502), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 164/270 (60%), Gaps = 32/270 (11%)
Query: 17 PRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERK 76
P+ EPE ++ TLKRP +A+DAREVARKL+KSGAI I + + +Q FKRP+G ER
Sbjct: 37 PKQEPE---SALTLKRPTDARDAREVARKLIKSGAIPAIQKQQTKQDQTSFKRPKGQERA 93
Query: 77 LTETDRSTVSAYQPFSAIQPEDS-EPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTR 135
T +TV+AYQPFS+ Q + + E + S+ +K R N + ++V E LT
Sbjct: 94 KRSTSETTVAAYQPFSSTQNDVAQETIISE--IIKEEPRRQNLYQHFATERVREERGLTE 151
Query: 136 -----LAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPE 190
EKP+ GNTIFV G ++EEFL++ F+ +G I +VSME+EK
Sbjct: 152 KVTLDTTQPEKPRAGNTIFVSGNKVTEEFLKKTFNDYGTIVNVSMEIEK----------- 200
Query: 191 SSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS 250
+RGFV+F PES+D+AI E++G V G+ L+V LARRQ ++ PINDA+SS
Sbjct: 201 ----------SRGFVSFAKPESADRAIAEMHGKSVTGIVLQVQLARRQPQIVPINDASSS 250
Query: 251 TTWSAIACHQSLKGNHKDKRHQVIYDDDIF 280
WS+IA +S KG+HKD R V Y+DD
Sbjct: 251 AVWSSIAASKSQKGSHKDLRQMVQYNDDFL 280
>sp|Q0V898|NELFE_BOVIN Negative elongation factor E OS=Bos taurus GN=RDBP PE=2 SV=1
Length = 374
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 252 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 294
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 295 ----TYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQN 346
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 347 SPKGCHRDKRTQIVYSDDVYKE 368
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>sp|P18615|NELFE_HUMAN Negative elongation factor E OS=Homo sapiens GN=RDBP PE=1 SV=3
Length = 380
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 26/142 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 258 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 300
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 301 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 352
Query: 261 SLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 353 SPKGCHRDKRTQIVYSDDVYKE 374
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 MDTATATEQAKQLVKSGAISAI---KAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>sp|P19426|NELFE_MOUSE Negative elongation factor E OS=Mus musculus GN=Rdbp PE=1 SV=2
Length = 375
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 26/139 (18%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ + FV
Sbjct: 262 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV----------------- 304
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQ 260
T++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 305 ----TYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQN 356
Query: 261 SLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 357 SPKGCHRDKRTQIVYSDDL 375
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 34 IEAKDAREVARKLLKSGAINPIVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPF 91
++ A E A++L+KSGAI+ I + GFKR R LE KL + ++ V +QPF
Sbjct: 56 VDTATATEQAKQLVKSGAISAIK---AETKNSGFKRSRTLEGKLKDPEKGPVPTFQPF 110
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I S + + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I S + + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.7 bits (86), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I S + + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I S + + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ FS FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGE----DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I S + + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Query: 154 GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPE 211
GI +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-------------------GFVCFSSPE 344
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG+ M+ E+ + P S K +TD+ + GFV+F+ E
Sbjct: 187 AKEFPNVYIKNFGE----DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G ++ V A+++++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSD 193
P+ + G IFV+ I+ + L S FG I C+V + +G+
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGY---------- 140
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232
GFV F++ E++++AI ++NG + G K+ V
Sbjct: 141 ---------GFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ F+ FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I S + + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 22/92 (23%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFD 208
G + +E L++ F +G SV + + K RGF GFV+F+
Sbjct: 199 GEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGF-------------------GFVSFE 239
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
E + KA+ ++NG + G + V A+++++
Sbjct: 240 RHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVE 271
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDC 200
G ++V+ GI +E LR+ F FG I S + +E GR GF
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPE 211
++EF + FG M E+ + P S K +TDD + GFV+F+ E
Sbjct: 187 AKEFTNVYIKNFGD----DMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+NG + G + V A+++++
Sbjct: 243 DAQKAVDEMNGKDMNGKSMFVGRAQKKVE 271
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I S + + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR+ FS FG I S + +E GR GF GFV F SPE
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 141 KPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKA 195
K K ++++ G + +E L++ FS FGK SV + + K +GF
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGF------------ 233
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFV+++ E ++KA+ E+NG + G + V A+++++
Sbjct: 234 -------GFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVE 271
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P+ + G +F++ I + L FS FG I S + + KG FV F++ E+
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 192 SDKAI 196
+DKAI
Sbjct: 151 ADKAI 155
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + +R K++Y + L +L+ + G +FV+ I E L + F
Sbjct: 309 LYVGRAQKKRERLDELKRLYESTRLEKLSKYQ----GVNLFVKNLDDSIDSEKLEEEFKP 364
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 365 FGTITSARVMVDDAGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 405
Query: 224 HVQGVKLKVSLARRQ 238
+QG L V+LA+R+
Sbjct: 406 MIQGKPLYVALAQRK 420
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 22/78 (28%)
Query: 164 FSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220
F FG + SV +E + K RGF GFV F++ ES+ A+ E+
Sbjct: 259 FKPFGPVTSVHLETDQEGKSRGF-------------------GFVNFENHESALNAVKEM 299
Query: 221 NGTHVQGVKLKVSLARRQ 238
N + G KL V A+++
Sbjct: 300 NDKEIDGQKLYVGRAQKK 317
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI ++ LR+ FS +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 22/92 (23%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFD 208
G + ++ L++ FS FG SV + ++ + RGF GFV +
Sbjct: 199 GEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGF-------------------GFVNYG 239
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ E + KA+TE+NG V G + V A+++++
Sbjct: 240 NHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIE 271
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI ++ LR+ FS +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTF 207
G + ++ LR+ FS FG SV K + DD R GFV +
Sbjct: 199 GEDMDDKRLREIFSAFGNTLSV--------------------KVMMDDTGRSRGFGFVNY 238
Query: 208 DSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ E + KA++E+NG V G + V A+++++
Sbjct: 239 GNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIE 271
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +RT KK Y L +L+ + G +FV+ I E L + F
Sbjct: 318 IYVGRAQKKRERTEELKKQYEAVRLEKLSKYQ----GVNLFVKNLDEQIDSEKLEEEFKP 373
Query: 167 FGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTFDSPESSDKAITEVNG 222
FG I +S K + DD + GFV F +PE + KAITE+N
Sbjct: 374 FGTI--------------------TSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQ 413
Query: 223 THVQGVKLKVSLARRQ 238
V G L V+LA+R+
Sbjct: 414 RMVNGKPLYVALAQRK 429
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 22/86 (25%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
+E+ + F+ FGKI S+ +E + K +GF GFV F+ E+
Sbjct: 260 TEKEFEELFAPFGKITSIYLEKDAEGKSKGF-------------------GFVNFEEHEA 300
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+N + G K+ V A+++
Sbjct: 301 AAKAVEELNDKEINGQKIYVGRAQKK 326
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 26/92 (28%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G IF++ I + L FS FGKI SV K
Sbjct: 147 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSV--------------------KV 186
Query: 196 ITDDCAR----GFVTFDSPESSDKAITEVNGT 223
TDD + GFV +++ E++ AI VNG
Sbjct: 187 ATDDLGQSKCFGFVHYETEEAAQAAIESVNGM 218
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 23/98 (23%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDC 200
G ++V+ GI ++ LR+ F +G I S + E G +GF
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGF----------------- 335
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 --GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR----GFVTF 207
G + ++ LR+ FS FG SV K + DD R GFV +
Sbjct: 199 GEDMDDKRLREIFSAFGNTLSV--------------------KVMMDDSGRSRGFGFVNY 238
Query: 208 DSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ E + KA++E+NG V G + V A+++++
Sbjct: 239 GNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIE 271
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 28/142 (19%)
Query: 102 VDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEF 159
++ K + L V + + +R KK Y + L +LA + G +FV+ I +E
Sbjct: 282 LEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQ----GVNLFVKNLDDSIDDEK 337
Query: 160 LRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
L++ F+ FG I S + E RGF GFV F +PE + KA
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGF-------------------GFVCFSTPEEATKA 378
Query: 217 ITEVNGTHVQGVKLKVSLARRQ 238
ITE N V G L V++A+R+
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRK 400
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 22/88 (25%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
S+E + F +GKI S +E + K RGF GFV F+ +
Sbjct: 231 SQEEFEELFGKYGKITSAVLEKDSEGKLRGF-------------------GFVNFEDHAA 271
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQLK 240
+ KA+ E+N +G KL V A+++ +
Sbjct: 272 AAKAVDELNELEFKGQKLYVGRAQKKYE 299
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQHFSI 166
L V + + ++R V KK Y L ++A + G +FV+ + +E L + F+
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFAP 344
Query: 167 FGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
+G I S M E G+ GF GFV F +PE + KAITE N
Sbjct: 345 YGTITSAKVMRTENGKSKGF-------------------GFVCFSTPEEATKAITEKNQQ 385
Query: 224 HVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 386 IVAGKPLYVAIAQRK 400
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 26/108 (24%)
Query: 138 PNEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESS 192
P+ + KG IF++ I + L FS+FG I S + E K +GF
Sbjct: 118 PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGF--------- 168
Query: 193 DKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS--LARRQ 238
GFV F+ ++ +AI +NG + G ++ V+ L+R++
Sbjct: 169 ----------GFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKE 206
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 22/86 (25%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
++E ++ F+ FG I S S+E + K +GF GFV ++ E
Sbjct: 231 TDEQFQELFAKFGPIVSASLEKDADGKLKGF-------------------GFVNYEKHED 271
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ +N + + G KL V A+++
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKK 297
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
TIFV G A ++EE L Q FS FG++ SV + V KG GFV F + +S+++AI +
Sbjct: 328 TIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGN 381
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +R KK Y + L +L+ + G +F++ I E L + F
Sbjct: 302 IYVGRAQKKRERLEELKKQYENTRLEKLSKYQ----GVNLFIKNLDDTIDSEKLEEEFKP 357
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 358 FGSITSARVMVDETGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 398
Query: 224 HVQGVKLKVSLARRQ 238
+ G L V+LA+R+
Sbjct: 399 MIYGKPLYVALAQRK 413
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
SEE ++ F +GKI S+ +E + K +GF GFV F++ E
Sbjct: 243 FSEEEFKKLFEAYGKITSIYLEKDHEGKSKGF-------------------GFVNFENHE 283
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
S+ KA+ E+N + G K+ V A+++
Sbjct: 284 SAVKAVDELNDKEINGQKIYVGRAQKK 310
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +R KK Y L +LA + G +FV+ I E L + F
Sbjct: 303 IYVGRAQKKRERLEELKKQYEAVRLEKLAKYQ----GVNLFVKNLDDTIDSEKLEEEFKP 358
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F +PE + KAITE+N
Sbjct: 359 FGTITSAKVMVDEAGKSKGF-------------------GFVCFTTPEEATKAITEMNTR 399
Query: 224 HVQGVKLKVSLARRQ 238
+ G L V+LA+R+
Sbjct: 400 MINGKPLYVALAQRK 414
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 22/86 (25%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
SEE + FS FGKI S+ +E + K +GF GFV F+ ES
Sbjct: 245 SEESFEKLFSPFGKITSIYLEKDQDGKSKGF-------------------GFVNFEDHES 285
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+N + G K+ V A+++
Sbjct: 286 AVKAVEELNDKEINGQKIYVGRAQKK 311
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I ++ LR+ FS +G I S + E G +GF GFV F SPE
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGF-------------------GFVCFSSPEE 345
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG V L V+LA+R+
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 23/99 (23%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSD 193
P + G IF++ I + L FS FG I C V+ + RGF
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGF---------- 140
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232
GFV F++ E++ +AI +NG + K+ V
Sbjct: 141 ---------GFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
+ E+ L+ FS FGK+ SV + D + C GFV F+ E +
Sbjct: 202 VDEQGLQDLFSQFGKMLSVKV---------------MRDNSGHSRCF-GFVNFEKHEEAQ 245
Query: 215 KAITEVNGTHVQGVKLKVSLARRQLK 240
KA+ +NG V G L A+++++
Sbjct: 246 KAVVHMNGKEVSGRLLYAGRAQKRVE 271
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F+S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T++ G +G++E+ +RQ FS FG+I + + +KG FV F S ES+ AI
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVS------ 268
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241
VNGT ++G +K + L +
Sbjct: 269 ---------------VNGTTIEGHVVKCYWGKETLDM 290
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 28/141 (19%)
Query: 103 DSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFL 160
+ K K L V + + +R +K Y + L ++ K +G N +F++ + +E L
Sbjct: 325 EYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKM---NKYQGVN-LFIKNLQDEVDDERL 380
Query: 161 RQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217
+ FS FG I S + E K +GF GFV + +PE ++KA+
Sbjct: 381 KAEFSAFGTITSAKIMTDEQGKSKGF-------------------GFVCYTTPEEANKAV 421
Query: 218 TEVNGTHVQGVKLKVSLARRQ 238
TE+N + G L V+LA+R+
Sbjct: 422 TEMNQRMLAGKPLYVALAQRK 442
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G +F++ I + L FS FGKI S + V++
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE---------------- 203
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS--LARRQ 238
+ + GFV FDS ES++ AI VNG + K+ V ++RR+
Sbjct: 204 LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 248
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
I+E+ F FG+I S+S+ + +K RGF GFV + + E
Sbjct: 272 ITEQEFSDLFGQFGEITSLSLVKDQNDKPRGF-------------------GFVNYANHE 312
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+N +G KL V A+++
Sbjct: 313 CAQKAVDELNDKEYKGKKLYVGRAQKK 339
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 26/102 (25%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G +F++ GI + L FS FG I S K
Sbjct: 90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC--------------------KV 129
Query: 196 ITDDC----ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
+TDD GFV +++ ES+DKAI +VNG + G K+ V
Sbjct: 130 VTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG 171
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I + LR+ FS FG I S + DKA T GFV + +P+ +
Sbjct: 295 IDNDKLREVFSQFGTITSAIVM--------------KDDKATTSK-GFGFVCYTAPDEAT 339
Query: 215 KAITEVNGTHVQGVKLKVSLARRQ 238
+A+TE+NG + L V+LA+R+
Sbjct: 340 RAVTEMNGRMIGTKPLYVALAQRK 363
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 109 LKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAG--ISEEFLRQHFSI 166
+ V + + +R KK Y + L +L+ + G +F++ I E L + F
Sbjct: 303 IYVGRAQKKRERMEELKKQYENTRLEKLSKYQ----GVNLFIKNLDDTIDSEKLEEEFKP 358
Query: 167 FGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223
FG I S + V+ K +GF GFV F SPE + KAITE+N
Sbjct: 359 FGTITSARVMVDETGKSKGF-------------------GFVCFSSPEEATKAITEMNQR 399
Query: 224 HVQGVKLKVSLARRQ 238
G L V+LA+R+
Sbjct: 400 MFFGKPLYVALAQRK 414
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 22/86 (25%)
Query: 156 SEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
SEE L++ F+ +G I S+ +E + K +GF GFV ++ E+
Sbjct: 245 SEEDLKKLFTPYGAITSIYLEKDAEGKSKGF-------------------GFVNYEGHEA 285
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+ E+N + G K+ V A+++
Sbjct: 286 AVKAVEELNDKEINGQKIYVGRAQKK 311
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 23/92 (25%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
TIFV G ++EE LRQ FS +G++ V + K C GF
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGK-------------------RC--GF 321
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V F + S+++A++ +NGT + G +++S R
Sbjct: 322 VQFGTRASAEQALSSLNGTQLGGQSIRLSWGR 353
>sp|P23241|ELAV_DROVI Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1
Length = 519
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 196 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 253
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 254 QAVNVLNGLRLQNKTIKVSFAR 275
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++E+ +R FS G+I SV + +K + ++ +P++ K GFV + P+ ++
Sbjct: 160 MTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG--QSLGYGFVNYVRPQDAE 217
Query: 215 KAITEVNGTHVQGVKLKVSLAR 236
+A+ +NG +Q +KVS AR
Sbjct: 218 QAVNVLNGLRLQNKTIKVSFAR 239
>sp|Q1ZXC2|PAP1B_DICDI Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum
GN=pabpc1B PE=3 SV=1
Length = 814
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSD 193
P ++ IFV+ G+ L FS FG I S +E EKG +G+
Sbjct: 266 PTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGISKGY---------- 315
Query: 194 KAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232
G+V F++ +S++KAI +VNGT + G + V
Sbjct: 316 ---------GYVHFETNDSAEKAIEKVNGTLILGKPINV 345
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 115 ETNDDRTPVDKKVYGESLLTR-------LAPNEKPKGGNTIFVQGA--GISEEFLRQHFS 165
ETND +KV G +L + ++ E+ K N +F + A I+ E L+Q S
Sbjct: 321 ETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENKVFFRNADESITIEILQQELS 380
Query: 166 I-FGKICSVSMEVE-----KGRGFVTFDSPESSDKAITDDCARGFVTFD--SPESSDKAI 217
FG+I S ++ + KG G V F + E + K +T+ A T D + SS+
Sbjct: 381 NRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGT 440
Query: 218 TEVNG 222
E+NG
Sbjct: 441 IEING 445
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 22/85 (25%)
Query: 157 EEFLRQHFSIFGKICSVS-MEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
+E LR+ F+ FG I S M G RGF GFV + +PE +
Sbjct: 343 DERLREEFAPFGAITSCKIMRAPSGVSRGF-------------------GFVCYSAPEEA 383
Query: 214 DKAITEVNGTHVQGVKLKVSLARRQ 238
+KA++E+NG + L V+LA+R+
Sbjct: 384 NKAVSEMNGKMLDNRPLYVALAQRK 408
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 362 EGPEGCN-IFIYH--LPQEFTDSEMLQMFLPFGNVISAKVFV---------------DRA 403
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 404 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 444
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 28/131 (21%)
Query: 115 ETNDDRTPVDKKVYGESLLT---RLAPNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGK 169
+T + DK++Y + R+ P EK ++++ A +SE+ LR+ F+ FGK
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKY---TNLYMKNLDADVSEDLLREKFAEFGK 226
Query: 170 ICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG--FVTFDSPESSDKAITEVNGTHVQG 227
I S+++ ++ R RG FV FD+PE + +A VNGT
Sbjct: 227 IVSLAIAKDENR------------------LCRGYAFVNFDNPEDARRAAETVNGTKFGS 268
Query: 228 VKLKVSLARRQ 238
L V A+++
Sbjct: 269 KCLYVGRAQKK 279
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 147 TIFVQGA--GISEEFLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITDDCA 201
I+V+ ++EE LR+HFS G I S + E K +GF
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGF------------------ 346
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F +PE + A+ +G G L V++A+++
Sbjct: 347 -GFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
Query: 105 KPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGA--GISEEFLRQ 162
K + L V + + +R KK Y + L +LA + G +F++ I +E L++
Sbjct: 297 KSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQ----GVNLFIKNLDDSIDDEKLKE 352
Query: 163 HFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222
F+ +G I S + ++ E + K GFV F SPE + KA+TE N
Sbjct: 353 EFAPYGTITSARVMRDQ----------EGNSKGF------GFVCFSSPEEATKAMTEKNQ 396
Query: 223 THVQGVKLKVSLARRQ 238
V G L V++A+R+
Sbjct: 397 QIVAGKPLYVAIAQRK 412
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 26/103 (25%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVEKG--RGFVTFDSPES 191
P + KG IF++ I + L + FS FG++ C V+++ E G RGF
Sbjct: 130 PAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGF-------- 180
Query: 192 SDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSL 234
GFV F + AI VNG + G+++ V++
Sbjct: 181 -----------GFVHFKEESDAKDAIEAVNGMLMNGLEVYVAM 212
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 24/101 (23%)
Query: 147 TIFVQGAGI--SEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA 201
I+V+ + ++E Q FS +G+I S ++E + K +GF
Sbjct: 232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGF------------------ 273
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
GFV F ++ KA+ E+NG + L V A+++ + A
Sbjct: 274 -GFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERA 313
>sp|Q8N6W0|CELF5_HUMAN CUGBP Elav-like family member 5 OS=Homo sapiens GN=CELF5 PE=1 SV=1
Length = 485
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 121 TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
TP+ V L + E P+G N + +EF L Q F FG I S +
Sbjct: 376 TPIAHSVPQPPPLLQQQQREGPEGCNLFIYH---LPQEFGDTELTQMFLPFGNIISSKVF 432
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ D+A GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 433 M---------------DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 477
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 375 EGPDGCN-IFIYH--LPQEFTDSEILQMFVPFGHVISAKVFV---------------DRA 416
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 457
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 371 EGPDGCN-IFIYH--LPQEFTDSEILQMFVPFGHVISAKVFV---------------DRA 412
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 413 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 453
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 375 EGPDGCN-IFIYH--LPQEFTDSEILQMFVPFGHVISAKVFV---------------DRA 416
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 457
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKG--RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212
I +E LR FS FG I V + E+G +GF G + F SPE
Sbjct: 304 IDDEKLRNEFSSFGSISRVKVMQEEGQSKGF-------------------GLICFSSPED 344
Query: 213 SDKAITEVNGTHVQGVKLKVSLARRQ 238
+ KA+TE+NG + L ++LA+R
Sbjct: 345 ATKAMTEMNGRILGSKPLSIALAQRH 370
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 152 GAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFD 208
G + +E L+ FS +GK SV + + K +GF GFV+FD
Sbjct: 198 GGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGF-------------------GFVSFD 238
Query: 209 SPESSDKAITEVNGTHVQGVKLKVSLARRQL 239
S E++ KA+ E+NG + G + V A++++
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 269
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 144 GGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
G +F++ I + L +HFS FGKI S K ++DD
Sbjct: 96 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILS--------------------SKVMSDDQG 135
Query: 202 ---RGFVTFDSPESSDKAITEVNGTHVQGVKLKVS-LARRQLKVAPINDAASSTTWSAIA 257
FV F + ++D+AI E+NG ++G K+ V R+ + A + AS T I
Sbjct: 136 SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI- 194
Query: 258 CHQSLKGNHKDKRHQVIY 275
++ G+ D+R + ++
Sbjct: 195 --KNFGGDMDDERLKDVF 210
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 TIFVQGAG--ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +E LRQ FS FG++ SV + V KG GFV F +S++ AI
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAI 373
>sp|Q9IBD0|CELF1_DANRE CUGBP Elav-like family member 1 OS=Danio rerio GN=celf1 PE=1 SV=1
Length = 501
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRL------APNEKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLL++ + E P+G N + +EF L Q F FG + S +
Sbjct: 392 LYSQSLLSQQNVSAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVISAKVF 448
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P SS AI +NG + +LKV L R
Sbjct: 449 I---------------DKQTNLSKCFGFVSYDNPVSSQAAIQSMNGFQIGMKRLKVQLKR 493
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 22/87 (25%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211
ISEE RQ F FG+I S ++ + K RGF GFV + + +
Sbjct: 240 ISEEEFRQMFEKFGEITSATLSRDQEGKSRGF-------------------GFVNYSTHD 280
Query: 212 SSDKAITEVNGTHVQGVKLKVSLARRQ 238
S+ A+ E+N V+G KL V A+++
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKK 307
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+S K + GFV F SP+ + KA+TE+N + G L V+LA+R+
Sbjct: 413 KSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRK 461
>sp|Q5F3T7|CELF1_CHICK CUGBP Elav-like family member 1 OS=Gallus gallus GN=CELF1 PE=1 SV=2
Length = 489
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 127 VYGESLLTRLAPN------EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSME 176
+Y +SLLT+ + E P+G N + +EF L Q F FG + S +
Sbjct: 380 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYH---LPQEFGDQDLLQMFMPFGNVVSAKVF 436
Query: 177 VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ DK GFV++D+P S+ AI +NG + +LKV L R
Sbjct: 437 I---------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 481
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 140 EKPKGGNTIFVQGAGISEEF----LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
E P+G N IF+ + +EF + Q F FG + S + V D+A
Sbjct: 372 EGPEGCN-IFIYH--LPQEFTDSEILQMFLPFGNVISAKVFV---------------DRA 413
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GFV+FD+P S+ AI +NG + +LKV L R
Sbjct: 414 TNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKR 454
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E LRQ F+ FG++ SV + KG GFV F S+ +AI
Sbjct: 296 TIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAI 347
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
TIFV G + +++E L+Q FS FG+I SV + V KG GFV F + ++++A+
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEAL 358
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,362,680
Number of Sequences: 539616
Number of extensions: 4806174
Number of successful extensions: 12209
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 11492
Number of HSP's gapped (non-prelim): 668
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)