Query psy15187
Match_columns 298
No_of_seqs 317 out of 2283
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:48:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.7 3.1E-16 6.7E-21 132.9 13.7 83 143-240 32-116 (144)
2 TIGR01659 sex-lethal sex-letha 99.7 2.3E-16 5E-21 151.3 13.4 100 141-240 103-277 (346)
3 TIGR01645 half-pint poly-U bin 99.7 2.8E-16 6.1E-21 159.4 13.4 98 143-240 105-286 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.2E-15 2.6E-20 144.8 12.6 95 145-239 3-172 (352)
5 TIGR01622 SF-CC1 splicing fact 99.6 3.5E-15 7.6E-20 146.7 16.1 96 142-237 86-265 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.7E-15 3.7E-20 143.7 11.7 83 143-240 267-351 (352)
7 TIGR01648 hnRNP-R-Q heterogene 99.6 9.7E-15 2.1E-19 147.7 13.4 103 138-240 51-224 (578)
8 KOG0144|consensus 99.6 6.2E-15 1.3E-19 141.2 10.4 100 143-242 32-210 (510)
9 KOG0148|consensus 99.6 1.3E-14 2.9E-19 132.1 9.7 97 146-242 63-242 (321)
10 KOG0131|consensus 99.6 1.3E-14 2.9E-19 125.5 8.7 100 142-241 6-180 (203)
11 KOG0117|consensus 99.6 1.9E-14 4.1E-19 138.4 10.6 113 128-242 68-252 (506)
12 PF00076 RRM_1: RNA recognitio 99.5 3.6E-14 7.8E-19 103.1 9.4 68 148-231 1-70 (70)
13 TIGR01628 PABP-1234 polyadenyl 99.5 3.9E-14 8.4E-19 143.3 12.3 94 147-240 2-169 (562)
14 TIGR01628 PABP-1234 polyadenyl 99.5 5.5E-14 1.2E-18 142.2 12.8 96 144-239 177-365 (562)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 6.4E-14 1.4E-18 139.7 12.9 95 145-239 2-175 (481)
16 KOG0122|consensus 99.5 3.7E-14 7.9E-19 127.6 9.7 85 139-238 183-269 (270)
17 KOG0121|consensus 99.5 4.4E-14 9.6E-19 116.1 6.8 81 142-237 33-115 (153)
18 KOG0125|consensus 99.5 1E-13 2.2E-18 129.1 9.9 97 142-256 93-192 (376)
19 KOG0127|consensus 99.5 9.7E-14 2.1E-18 136.3 9.8 97 146-242 6-200 (678)
20 KOG0149|consensus 99.5 9.5E-14 2.1E-18 124.4 6.6 76 146-237 13-90 (247)
21 KOG0113|consensus 99.4 1.1E-12 2.4E-17 121.0 11.7 80 146-240 102-183 (335)
22 KOG0130|consensus 99.4 2.9E-13 6.2E-18 112.3 6.1 83 142-239 69-153 (170)
23 KOG0145|consensus 99.4 6E-13 1.3E-17 120.9 8.4 100 139-238 121-358 (360)
24 KOG4207|consensus 99.4 4.2E-13 9.1E-18 118.3 6.3 78 145-237 13-92 (256)
25 KOG0109|consensus 99.4 5.9E-13 1.3E-17 122.5 6.7 93 146-240 3-152 (346)
26 PLN03213 repressor of silencin 99.4 2.3E-12 5E-17 125.5 9.8 75 144-237 9-87 (759)
27 PLN03120 nucleic acid binding 99.4 3.3E-12 7.2E-17 117.2 10.3 74 145-237 4-79 (260)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.4 4.2E-12 9.2E-17 126.5 12.0 81 143-238 293-375 (509)
29 KOG0107|consensus 99.4 1.8E-12 3.8E-17 111.8 7.9 77 144-240 9-87 (195)
30 PF14259 RRM_6: RNA recognitio 99.3 4.8E-12 1E-16 92.9 8.6 68 148-231 1-70 (70)
31 KOG0148|consensus 99.3 2.2E-12 4.8E-17 117.7 8.0 94 146-239 7-143 (321)
32 TIGR01648 hnRNP-R-Q heterogene 99.3 5.4E-12 1.2E-16 127.9 11.4 97 144-240 137-309 (578)
33 COG0724 RNA-binding proteins ( 99.3 5.9E-12 1.3E-16 111.0 9.9 78 145-237 115-194 (306)
34 TIGR01622 SF-CC1 splicing fact 99.3 8.7E-12 1.9E-16 122.7 12.1 52 145-196 186-245 (457)
35 smart00362 RRM_2 RNA recogniti 99.3 1.1E-11 2.3E-16 88.6 9.0 70 147-233 1-72 (72)
36 KOG0111|consensus 99.3 1.7E-12 3.7E-17 115.5 4.8 81 145-240 10-92 (298)
37 PLN03121 nucleic acid binding 99.3 1.3E-11 2.8E-16 111.9 10.2 74 144-236 4-79 (243)
38 KOG0126|consensus 99.3 3.8E-13 8.3E-18 116.5 -0.1 79 143-236 33-113 (219)
39 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.6E-11 3.5E-16 122.5 11.3 78 142-239 272-352 (481)
40 KOG0145|consensus 99.3 1.3E-11 2.7E-16 112.4 8.1 80 146-240 42-123 (360)
41 PF13893 RRM_5: RNA recognitio 99.3 3E-11 6.6E-16 85.5 8.1 56 160-235 1-56 (56)
42 smart00361 RRM_1 RNA recogniti 99.2 2.6E-11 5.6E-16 90.1 7.8 61 157-232 2-69 (70)
43 smart00360 RRM RNA recognition 99.2 3.5E-11 7.7E-16 85.5 8.1 69 150-233 1-71 (71)
44 KOG4205|consensus 99.2 2E-11 4.3E-16 115.3 6.8 101 144-245 5-183 (311)
45 KOG0108|consensus 99.2 5.8E-11 1.3E-15 116.7 9.3 82 146-242 19-102 (435)
46 cd00590 RRM RRM (RNA recogniti 99.2 2.3E-10 5E-15 82.0 9.7 72 147-234 1-74 (74)
47 KOG0123|consensus 99.2 1.1E-10 2.3E-15 113.1 9.7 95 146-242 2-157 (369)
48 KOG0117|consensus 99.2 1.7E-10 3.7E-15 111.5 10.6 98 143-240 162-333 (506)
49 KOG0124|consensus 99.1 2.5E-11 5.4E-16 114.7 4.1 77 146-237 114-192 (544)
50 KOG0132|consensus 99.1 2.6E-10 5.6E-15 116.1 11.4 81 141-242 417-499 (894)
51 KOG0127|consensus 99.1 1.8E-10 3.8E-15 113.6 9.5 115 144-286 291-413 (678)
52 KOG0146|consensus 99.1 4.9E-11 1.1E-15 108.9 5.2 86 140-240 280-367 (371)
53 KOG0123|consensus 99.1 8.4E-11 1.8E-15 113.9 6.8 90 148-238 79-246 (369)
54 KOG0105|consensus 99.1 1.3E-10 2.7E-15 101.3 6.3 77 143-238 4-83 (241)
55 KOG0110|consensus 99.1 1.4E-10 3E-15 117.1 6.8 97 146-242 516-697 (725)
56 KOG0114|consensus 99.1 7.2E-10 1.6E-14 88.4 8.3 80 141-238 14-95 (124)
57 KOG0415|consensus 99.1 2.4E-10 5.3E-15 107.7 6.6 82 141-237 235-318 (479)
58 KOG0147|consensus 99.0 6.2E-10 1.3E-14 109.9 6.1 76 147-237 280-357 (549)
59 TIGR01642 U2AF_lg U2 snRNP aux 98.9 5.9E-09 1.3E-13 103.9 10.1 79 144-237 408-501 (509)
60 KOG0153|consensus 98.9 1.1E-08 2.3E-13 96.5 9.2 71 146-237 229-302 (377)
61 KOG4208|consensus 98.8 8.7E-09 1.9E-13 91.1 7.0 78 146-238 50-130 (214)
62 KOG4206|consensus 98.8 1.2E-08 2.6E-13 91.3 7.6 77 147-241 11-93 (221)
63 KOG4661|consensus 98.8 1.2E-08 2.6E-13 101.3 8.0 83 141-239 401-486 (940)
64 KOG0124|consensus 98.8 9.5E-09 2.1E-13 97.5 6.8 80 146-240 211-292 (544)
65 KOG0144|consensus 98.8 9.6E-09 2.1E-13 99.1 6.1 85 141-240 420-506 (510)
66 KOG1548|consensus 98.8 8.8E-08 1.9E-12 90.4 12.0 100 141-240 130-354 (382)
67 KOG0146|consensus 98.7 3.7E-08 7.9E-13 90.3 6.4 83 144-242 18-105 (371)
68 KOG0110|consensus 98.6 1.8E-07 3.9E-12 95.0 9.6 96 141-236 381-596 (725)
69 TIGR01659 sex-lethal sex-letha 98.6 1E-07 2.2E-12 91.8 6.8 55 144-198 192-254 (346)
70 KOG0151|consensus 98.6 1.4E-07 3.1E-12 95.7 7.7 76 141-237 170-256 (877)
71 KOG4205|consensus 98.6 1.4E-07 3.1E-12 89.3 7.1 96 68-196 45-156 (311)
72 KOG0106|consensus 98.5 1E-07 2.2E-12 85.7 5.2 89 146-236 2-169 (216)
73 TIGR01645 half-pint poly-U bin 98.5 2.3E-07 4.9E-12 95.0 7.2 55 144-198 203-265 (612)
74 KOG4209|consensus 98.4 3.7E-07 8E-12 83.3 6.4 82 143-240 99-182 (231)
75 KOG4212|consensus 98.4 1.5E-06 3.3E-11 84.4 9.7 76 146-237 45-123 (608)
76 KOG0226|consensus 98.4 3.4E-07 7.4E-12 83.4 4.7 80 140-234 185-266 (290)
77 KOG1457|consensus 98.3 5.3E-06 1.2E-10 74.6 11.3 84 146-244 35-124 (284)
78 KOG1456|consensus 98.3 4.2E-06 9E-11 80.0 11.0 115 139-256 25-214 (494)
79 KOG4212|consensus 98.3 9.6E-07 2.1E-11 85.7 6.7 75 141-235 532-608 (608)
80 KOG4660|consensus 98.2 3E-06 6.5E-11 84.3 6.0 73 139-231 69-143 (549)
81 KOG0533|consensus 98.1 9.7E-06 2.1E-10 74.3 8.6 82 144-241 82-165 (243)
82 KOG1190|consensus 98.0 3.4E-05 7.3E-10 74.6 10.6 76 145-240 297-375 (492)
83 KOG0116|consensus 98.0 2.1E-05 4.6E-10 77.3 8.9 80 143-239 286-368 (419)
84 KOG4454|consensus 98.0 3.2E-06 6.9E-11 75.8 1.8 76 145-237 9-86 (267)
85 KOG2314|consensus 97.9 5E-05 1.1E-09 75.9 8.3 81 140-236 53-142 (698)
86 KOG0120|consensus 97.7 3.6E-05 7.8E-10 76.9 5.1 85 141-240 285-371 (500)
87 KOG4211|consensus 97.7 0.00021 4.6E-09 70.5 9.7 89 147-237 12-181 (510)
88 KOG1995|consensus 97.7 3.7E-05 7.9E-10 73.2 3.9 94 142-242 63-158 (351)
89 PF04059 RRM_2: RNA recognitio 97.6 0.00038 8.3E-09 55.3 8.7 79 146-239 2-88 (97)
90 KOG0147|consensus 97.6 8.6E-05 1.9E-09 74.0 5.3 82 140-237 174-257 (549)
91 COG5175 MOT2 Transcriptional r 97.6 0.00015 3.3E-09 68.7 6.6 81 143-237 112-202 (480)
92 KOG0109|consensus 97.4 9.8E-05 2.1E-09 68.8 3.4 53 142-196 75-129 (346)
93 PF08777 RRM_3: RNA binding mo 97.4 0.00019 4.2E-09 57.7 4.4 69 145-234 1-76 (105)
94 KOG0120|consensus 97.4 0.00035 7.6E-09 70.0 7.0 66 160-237 426-491 (500)
95 KOG0131|consensus 97.4 0.00012 2.7E-09 64.0 3.4 44 193-236 44-87 (203)
96 PF11608 Limkain-b1: Limkain b 97.4 0.001 2.2E-08 51.6 7.9 68 146-238 3-77 (90)
97 KOG4210|consensus 97.4 0.00011 2.3E-09 69.2 2.7 81 144-240 183-266 (285)
98 KOG1457|consensus 97.2 0.00028 6E-09 63.7 3.8 65 143-226 208-274 (284)
99 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00086 1.9E-08 47.3 5.4 50 146-195 2-52 (53)
100 KOG1190|consensus 97.0 0.0013 2.8E-08 64.0 5.5 73 146-237 151-227 (492)
101 KOG1456|consensus 96.9 0.0051 1.1E-07 59.3 9.3 78 140-237 282-362 (494)
102 KOG4206|consensus 96.8 0.0043 9.2E-08 56.0 7.5 75 142-236 143-220 (221)
103 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0071 1.5E-07 48.3 6.1 82 146-236 7-90 (100)
104 KOG0128|consensus 96.5 0.00034 7.3E-09 73.0 -2.3 95 143-237 665-814 (881)
105 KOG3152|consensus 96.3 0.002 4.4E-08 59.1 2.1 72 146-229 75-157 (278)
106 KOG1996|consensus 96.2 0.014 3E-07 54.8 6.7 65 157-235 300-364 (378)
107 KOG4849|consensus 96.1 0.0053 1.2E-07 58.7 3.5 71 147-232 82-156 (498)
108 PF08952 DUF1866: Domain of un 96.0 0.03 6.6E-07 47.6 7.5 56 159-238 52-107 (146)
109 KOG4307|consensus 95.9 0.022 4.8E-07 58.8 7.5 77 143-234 864-943 (944)
110 KOG2202|consensus 95.9 0.0038 8.3E-08 57.3 1.8 62 159-236 84-146 (260)
111 KOG2416|consensus 95.8 0.015 3.3E-07 59.0 5.6 77 141-238 440-522 (718)
112 KOG0129|consensus 95.5 0.029 6.3E-07 56.1 6.3 62 142-218 367-431 (520)
113 KOG0112|consensus 95.5 0.0039 8.4E-08 65.7 0.2 106 138-260 365-473 (975)
114 KOG2068|consensus 95.3 0.0046 1E-07 58.7 0.0 79 143-237 75-162 (327)
115 PF10309 DUF2414: Protein of u 95.3 0.09 2E-06 38.4 6.7 53 146-220 6-62 (62)
116 KOG1365|consensus 95.2 0.049 1.1E-06 52.9 6.4 92 145-236 159-360 (508)
117 KOG0129|consensus 95.1 0.051 1.1E-06 54.4 6.6 78 140-236 254-339 (520)
118 KOG0112|consensus 94.5 0.11 2.4E-06 55.2 7.5 74 143-237 453-530 (975)
119 KOG1855|consensus 94.5 0.036 7.8E-07 54.4 3.6 74 143-223 229-309 (484)
120 KOG2193|consensus 94.3 0.017 3.6E-07 56.6 0.9 92 146-237 2-156 (584)
121 KOG0106|consensus 94.0 0.027 5.9E-07 50.9 1.7 39 199-237 34-72 (216)
122 KOG2135|consensus 93.5 0.048 1E-06 54.1 2.4 62 155-238 385-446 (526)
123 PF04847 Calcipressin: Calcipr 93.2 0.26 5.7E-06 43.6 6.5 62 156-238 8-71 (184)
124 KOG0105|consensus 93.0 0.58 1.3E-05 41.6 8.1 70 143-234 113-186 (241)
125 PF11767 SET_assoc: Histone ly 91.8 0.8 1.7E-05 33.8 6.5 60 149-232 6-65 (66)
126 PF03880 DbpA: DbpA RNA bindin 91.2 0.89 1.9E-05 33.9 6.4 65 147-235 2-74 (74)
127 KOG4285|consensus 90.8 0.64 1.4E-05 44.1 6.3 71 147-239 199-271 (350)
128 KOG0115|consensus 90.5 0.27 5.9E-06 45.5 3.5 59 146-221 32-93 (275)
129 KOG4211|consensus 90.0 0.55 1.2E-05 47.0 5.4 72 146-217 104-188 (510)
130 PF08675 RNA_bind: RNA binding 89.5 1.6 3.6E-05 33.8 6.5 53 146-221 10-63 (87)
131 PF15023 DUF4523: Protein of u 88.3 1.6 3.6E-05 37.2 6.3 69 145-236 86-160 (166)
132 KOG4574|consensus 87.6 0.39 8.5E-06 50.9 2.7 71 153-244 308-380 (1007)
133 KOG0122|consensus 86.1 0.68 1.5E-05 42.7 3.1 47 158-204 207-256 (270)
134 smart00361 RRM_1 RNA recogniti 85.8 0.8 1.7E-05 33.4 2.9 38 162-199 14-57 (70)
135 KOG4676|consensus 84.6 1.1 2.3E-05 44.0 3.8 74 147-235 9-86 (479)
136 KOG4210|consensus 84.4 0.49 1.1E-05 44.7 1.4 81 144-239 87-169 (285)
137 KOG1548|consensus 82.0 1.5 3.2E-05 42.4 3.5 43 197-239 180-222 (382)
138 KOG2253|consensus 81.5 0.93 2E-05 46.9 2.1 66 146-235 41-108 (668)
139 PF07576 BRAP2: BRCA1-associat 80.5 16 0.00035 29.6 8.7 56 153-226 23-80 (110)
140 KOG4660|consensus 76.4 3.2 7E-05 42.2 4.1 42 199-240 430-475 (549)
141 KOG4307|consensus 76.0 1.8 3.9E-05 45.3 2.3 67 144-210 433-511 (944)
142 PF00076 RRM_1: RNA recognitio 73.8 2.2 4.7E-05 29.8 1.7 40 162-201 20-61 (70)
143 PF03467 Smg4_UPF3: Smg-4/UPF3 72.4 5 0.00011 35.1 3.9 81 143-237 5-97 (176)
144 KOG0125|consensus 72.1 2.1 4.6E-05 41.1 1.6 38 159-196 115-153 (376)
145 KOG2318|consensus 68.5 23 0.00051 36.5 8.1 93 143-235 172-305 (650)
146 smart00360 RRM RNA recognition 68.1 4.8 0.0001 27.2 2.4 24 178-201 37-60 (71)
147 KOG0149|consensus 67.0 3.6 7.9E-05 37.7 1.9 39 160-198 32-73 (247)
148 PF15513 DUF4651: Domain of un 66.4 14 0.00031 27.0 4.5 19 158-176 9-27 (62)
149 PLN03134 glycine-rich RNA-bind 65.2 5.1 0.00011 33.7 2.4 21 178-198 75-95 (144)
150 KOG0114|consensus 65.0 12 0.00026 30.5 4.3 39 179-217 57-101 (124)
151 smart00362 RRM_2 RNA recogniti 63.2 6.9 0.00015 26.5 2.4 25 177-201 37-61 (72)
152 KOG2591|consensus 58.6 21 0.00046 36.8 5.7 52 138-190 167-223 (684)
153 KOG0128|consensus 54.8 6 0.00013 42.3 1.2 54 146-199 737-797 (881)
154 PF14259 RRM_6: RNA recognitio 54.4 8.4 0.00018 27.2 1.7 21 178-198 38-58 (70)
155 KOG0804|consensus 51.8 50 0.0011 33.2 6.9 65 145-227 74-142 (493)
156 KOG2891|consensus 51.0 5.6 0.00012 37.5 0.3 22 155-176 173-194 (445)
157 cd00590 RRM RRM (RNA recogniti 50.8 13 0.00029 25.2 2.2 26 177-202 38-63 (74)
158 PLN03121 nucleic acid binding 47.7 17 0.00037 33.6 2.8 41 158-198 23-63 (243)
159 KOG1365|consensus 44.5 71 0.0015 31.7 6.6 44 153-196 70-119 (508)
160 KOG2193|consensus 37.7 17 0.00037 36.3 1.3 43 199-241 36-79 (584)
161 KOG4208|consensus 34.0 19 0.00041 32.5 0.9 34 178-211 91-130 (214)
162 COG0724 RNA-binding proteins ( 33.1 49 0.0011 28.4 3.4 40 140-179 220-261 (306)
163 KOG4019|consensus 33.0 37 0.0008 30.2 2.5 35 203-237 54-89 (193)
164 KOG0111|consensus 27.1 34 0.00074 31.4 1.3 21 177-197 50-70 (298)
165 PRK09507 cspE cold shock prote 25.3 51 0.0011 24.2 1.8 11 227-237 47-57 (69)
166 KOG4207|consensus 25.2 41 0.00088 30.7 1.5 38 159-196 32-72 (256)
167 PRK15464 cold shock-like prote 25.1 46 0.00099 24.7 1.5 14 224-237 45-58 (70)
168 PRK10943 cold shock-like prote 24.7 51 0.0011 24.2 1.7 12 226-237 46-57 (69)
169 PRK15463 cold shock-like prote 24.6 51 0.0011 24.3 1.7 12 226-237 47-58 (70)
170 PF06394 Pepsin-I3: Pepsin inh 24.3 54 0.0012 24.9 1.8 19 145-163 27-48 (76)
171 PRK09890 cold shock protein Cs 23.9 51 0.0011 24.2 1.6 11 226-236 47-57 (70)
172 PRK09937 stationary phase/star 23.8 56 0.0012 24.5 1.8 13 225-237 43-55 (74)
173 PF11411 DNA_ligase_IV: DNA li 23.8 55 0.0012 21.3 1.5 17 153-169 19-35 (36)
174 PF02714 DUF221: Domain of unk 22.5 1E+02 0.0022 28.9 3.7 34 203-238 1-34 (325)
175 TIGR02381 cspD cold shock doma 22.3 64 0.0014 23.5 1.8 13 225-237 43-55 (68)
176 PF03468 XS: XS domain; Inter 22.3 94 0.002 25.3 3.0 41 155-213 29-69 (116)
177 KOG4410|consensus 22.0 3.5E+02 0.0077 25.9 7.0 43 146-188 331-376 (396)
178 KOG4676|consensus 21.7 14 0.00029 36.6 -2.4 31 146-176 152-184 (479)
179 KOG0121|consensus 21.2 59 0.0013 27.5 1.6 21 178-198 77-97 (153)
180 PF00313 CSD: 'Cold-shock' DNA 21.0 87 0.0019 22.1 2.3 10 200-209 12-21 (66)
181 cd00225 API3 Ascaris pepsin in 20.8 95 0.0021 26.7 2.7 20 144-163 109-131 (159)
182 PRK10354 RNA chaperone/anti-te 20.8 67 0.0015 23.5 1.7 10 227-236 48-57 (70)
183 PRK14998 cold shock-like prote 20.5 68 0.0015 23.9 1.7 13 225-237 43-55 (73)
184 PF09180 ProRS-C_1: Prolyl-tRN 20.2 1.2E+02 0.0027 22.0 3.0 41 190-231 2-42 (68)
185 COG5638 Uncharacterized conser 20.2 4.4E+02 0.0094 26.6 7.5 36 200-235 258-295 (622)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=3.1e-16 Score=132.91 Aligned_cols=83 Identities=25% Similarity=0.491 Sum_probs=77.2
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+++|||+| ++++|++|+++|.+||.|.+|.|+.|+.++. ++|||||+|.+.++|+.||..|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~---------------~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR---------------SRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC---------------cceEEEEEECCHHHHHHHHHHc
Confidence 3457999999 9999999999999999999999999988876 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.|+..++.
T Consensus 97 ng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 97 DGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred CCCEECCEEEEEEeCCcCCC
Confidence 99999999999999987655
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=2.3e-16 Score=151.30 Aligned_cols=100 Identities=27% Similarity=0.395 Sum_probs=89.8
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh----------------
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI---------------- 196 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai---------------- 196 (298)
....+++|||+| +++|+++|+++|+.||+|++|.|+.| +++|||+|.+.++|++||
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 445678999999 99999999999999999999999877 479999999999999999
Q ss_pred -------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECC
Q psy15187 197 -------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQG 227 (298)
Q Consensus 197 -------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~G 227 (298)
++++|||||+|.+.++|++||..||+..+.|
T Consensus 183 ~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 183 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred cccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 1267999999999999999999999999975
Q ss_pred --eEEEEEEcccccc
Q psy15187 228 --VKLKVSLARRQLK 240 (298)
Q Consensus 228 --r~L~V~~A~~k~~ 240 (298)
++|+|.||..+..
T Consensus 263 ~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 263 GSQPLTVRLAEEHGK 277 (346)
T ss_pred CceeEEEEECCcccc
Confidence 7999999986544
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=2.8e-16 Score=159.37 Aligned_cols=98 Identities=26% Similarity=0.420 Sum_probs=90.3
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh------------------
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI------------------ 196 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai------------------ 196 (298)
...++||||| +++++++|+++|.+||+|.+|.|+.| +|||||+|.+.++|++||
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3458999999 99999999999999999999999876 799999999999999998
Q ss_pred ----------------------------------------------------------hcCCceEEEEeCCHHHHHHHHH
Q psy15187 197 ----------------------------------------------------------TDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 197 ----------------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
+.++|||||+|.+.++|..||.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 1278999999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..|+|+.|+|.++.+.+.
T Consensus 265 amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCcc
Confidence 9999999999999999997554
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.65 E-value=1.2e-15 Score=144.77 Aligned_cols=95 Identities=29% Similarity=0.502 Sum_probs=86.0
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh--------------------
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI-------------------- 196 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai-------------------- 196 (298)
.++|||+| +++++++|+++|+.||+|.+|.|+.| +|+|||+|.+.++|++||
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 37999999 89999999999999999999999976 479999999999999999
Q ss_pred ---------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECC--eE
Q psy15187 197 ---------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQG--VK 229 (298)
Q Consensus 197 ---------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~G--r~ 229 (298)
+.++|||||+|.+.++|..||..|||..+.| .+
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~ 162 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEP 162 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 1268999999999999999999999999987 67
Q ss_pred EEEEEccccc
Q psy15187 230 LKVSLARRQL 239 (298)
Q Consensus 230 L~V~~A~~k~ 239 (298)
|.|.|+....
T Consensus 163 i~v~~a~~~~ 172 (352)
T TIGR01661 163 ITVKFANNPS 172 (352)
T ss_pred EEEEECCCCC
Confidence 8999986543
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.64 E-value=3.5e-15 Score=146.74 Aligned_cols=96 Identities=30% Similarity=0.425 Sum_probs=88.0
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh-----------------
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI----------------- 196 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai----------------- 196 (298)
.....+|||+| +.+++++|+++|++||.|..|.|+.+ +++|||+|.+.++|++||
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 45567999999 99999999999999999999999976 689999999999998886
Q ss_pred -----------------------------------------------------------hcCCceEEEEeCCHHHHHHHH
Q psy15187 197 -----------------------------------------------------------TDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 197 -----------------------------------------------------------~~skGfaFV~F~~~e~A~~Ai 217 (298)
+.++|||||+|.+.++|..|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 136899999999999999999
Q ss_pred HHhCCcEECCeEEEEEEccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~ 237 (298)
..|||..|.|+.|.|.|+..
T Consensus 246 ~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 246 EVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HhcCCcEECCEEEEEEEccC
Confidence 99999999999999999763
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.63 E-value=1.7e-15 Score=143.75 Aligned_cols=83 Identities=25% Similarity=0.319 Sum_probs=76.9
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+.+|||+| +++++++|+++|++||.|.+|.|+.|..+|- ++|||||+|.+.++|..||..|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~---------------skG~aFV~F~~~~~A~~Ai~~l 331 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQ---------------CKGYGFVSMTNYDEAAMAILSL 331 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCC---------------ccceEEEEECCHHHHHHHHHHh
Confidence 3445799999 9999999999999999999999999987776 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.|+..+..
T Consensus 332 nG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 332 NGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCCEECCeEEEEEEccCCCC
Confidence 99999999999999987654
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=9.7e-15 Score=147.75 Aligned_cols=103 Identities=22% Similarity=0.352 Sum_probs=90.2
Q ss_pred CCCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-----cCceeEEecChhhhhhhh--------------
Q psy15187 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPESSDKAI-------------- 196 (298)
Q Consensus 138 ~~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-----k~~gfV~f~~~~~adkai-------------- 196 (298)
+...+..+|+|||+| ++++|++|+++|++||.|.+|+|++| +++|||+|.+.++|++||
T Consensus 51 ~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 51 SGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 334456679999999 89999999999999999999999876 789999999999999999
Q ss_pred ------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCC--cEEC
Q psy15187 197 ------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNG--THVQ 226 (298)
Q Consensus 197 ------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG--~~i~ 226 (298)
++++|||||+|.++++|..|+..|+. ..+.
T Consensus 131 ~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 131 GVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred cccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 12589999999999999999998864 4678
Q ss_pred CeEEEEEEcccccc
Q psy15187 227 GVKLKVSLARRQLK 240 (298)
Q Consensus 227 Gr~L~V~~A~~k~~ 240 (298)
|+.|.|.|+.+...
T Consensus 211 Gr~I~VdwA~p~~~ 224 (578)
T TIGR01648 211 GHVIAVDWAEPEEE 224 (578)
T ss_pred CceEEEEeeccccc
Confidence 99999999987543
No 8
>KOG0144|consensus
Probab=99.58 E-value=6.2e-15 Score=141.20 Aligned_cols=100 Identities=29% Similarity=0.409 Sum_probs=89.8
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh------------------
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI------------------ 196 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai------------------ 196 (298)
...-+||||- ..++|.||+++|++||.|.+|.|++| ++|+||+|.+.++|++||
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 3346899999 89999999999999999999999998 599999999999999999
Q ss_pred --------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEEC
Q psy15187 197 --------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQ 226 (298)
Q Consensus 197 --------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~ 226 (298)
+.+||||||.|.+.+.|..||++|||..-.
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceee
Confidence 239999999999999999999999998654
Q ss_pred -C--eEEEEEEcccccccc
Q psy15187 227 -G--VKLKVSLARRQLKVA 242 (298)
Q Consensus 227 -G--r~L~V~~A~~k~~~~ 242 (298)
| .+|.|.||.++..+.
T Consensus 192 eGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 192 EGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccCCCceEEEecccCCCch
Confidence 4 699999999876654
No 9
>KOG0148|consensus
Probab=99.56 E-value=1.3e-14 Score=132.07 Aligned_cols=97 Identities=30% Similarity=0.501 Sum_probs=89.5
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh---------------------
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI--------------------- 196 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai--------------------- 196 (298)
--||||. ..++-++|++.|.+||+|.+++|++| +|+|||.|-+.++|++||
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 4799998 99999999999999999999999988 799999999999999999
Q ss_pred ------------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 197 ------------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 197 ------------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
-+.+||+||.|+++|.|..||..|||
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNn 222 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNN 222 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcC
Confidence 11799999999999999999999999
Q ss_pred cEECCeEEEEEEcccccccc
Q psy15187 223 THVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~k~~~~ 242 (298)
.+|+|+.+++.|.+......
T Consensus 223 tei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 223 TEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred ceeCceEEEEeccccCCCCC
Confidence 99999999999998755433
No 10
>KOG0131|consensus
Probab=99.55 E-value=1.3e-14 Score=125.49 Aligned_cols=100 Identities=29% Similarity=0.434 Sum_probs=92.1
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh-----------------
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI----------------- 196 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai----------------- 196 (298)
..++.|||||| ..++++.|+++|-+.|+|+++.|++| +|+|||+|.+.++||.||
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45668999999 89999999999999999999999977 699999999999999999
Q ss_pred --------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEEC
Q psy15187 197 --------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQ 226 (298)
Q Consensus 197 --------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~ 226 (298)
+.++|||||.|++.+.+..||..|||..+.
T Consensus 86 as~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 86 ASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred cccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 238999999999999999999999999999
Q ss_pred CeEEEEEEccccccc
Q psy15187 227 GVKLKVSLARRQLKV 241 (298)
Q Consensus 227 Gr~L~V~~A~~k~~~ 241 (298)
.++|.|+++..+...
T Consensus 166 nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTK 180 (203)
T ss_pred CCceEEEEEEecCCC
Confidence 999999999876543
No 11
>KOG0117|consensus
Probab=99.55 E-value=1.9e-14 Score=138.36 Aligned_cols=113 Identities=25% Similarity=0.354 Sum_probs=98.4
Q ss_pred cccccccccCCCCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh---
Q psy15187 128 YGESLLTRLAPNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI--- 196 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai--- 196 (298)
|+.++ ++++...+..||.||||+ .|+.|++|.-+|++.|+|-+++||+| +|++||+|.+.+.|..||
T Consensus 68 ~ggPp--P~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~l 145 (506)
T KOG0117|consen 68 YGGPP--PGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKEL 145 (506)
T ss_pred cCCCC--CcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHh
Confidence 44443 456777789999999999 99999999999999999999999988 799999999999999999
Q ss_pred -----------------------------------------------------------hcCCceEEEEeCCHHHHHHHH
Q psy15187 197 -----------------------------------------------------------TDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 197 -----------------------------------------------------------~~skGfaFV~F~~~e~A~~Ai 217 (298)
.++||||||+|.++..|..|-
T Consensus 146 nn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 146 NNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred hCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHH
Confidence 238999999999999999998
Q ss_pred HHhCCc--EECCeEEEEEEcccccccc
Q psy15187 218 TEVNGT--HVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 218 ~~lnG~--~i~Gr~L~V~~A~~k~~~~ 242 (298)
..|-.. .+-|+.+.|+||.++....
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEEEPD 252 (506)
T ss_pred hhccCCceeecCCcceeeccCcccCCC
Confidence 888543 4559999999999876643
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=3.6e-14 Score=103.12 Aligned_cols=68 Identities=37% Similarity=0.635 Sum_probs=62.3
Q ss_pred EEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEE
Q psy15187 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHV 225 (298)
Q Consensus 148 LfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i 225 (298)
|||+| .++++++|+++|++||.|..|.++.+ ..+. ++|||||+|.+.++|..|+..|||..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~---------------~~~~a~V~F~~~~~a~~a~~~l~g~~~ 64 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGK---------------SKGYAFVEFESEEDAEKALEELNGKKI 64 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSS---------------EEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-cccc---------------ccceEEEEEcCHHHHHHHHHHcCCCEE
Confidence 79999 99999999999999999999999987 3333 578899999999999999999999999
Q ss_pred CCeEEE
Q psy15187 226 QGVKLK 231 (298)
Q Consensus 226 ~Gr~L~ 231 (298)
+|+.|+
T Consensus 65 ~~~~ir 70 (70)
T PF00076_consen 65 NGRKIR 70 (70)
T ss_dssp TTEEEE
T ss_pred CccCcC
Confidence 999986
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=3.9e-14 Score=143.32 Aligned_cols=94 Identities=28% Similarity=0.496 Sum_probs=86.0
Q ss_pred EEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh----------------------
Q psy15187 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI---------------------- 196 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai---------------------- 196 (298)
+||||| .++||++|+++|++||.|.+|.|++| +++|||+|.+.++|++||
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999 89999999999999999999999877 369999999999999999
Q ss_pred --------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q psy15187 197 --------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232 (298)
Q Consensus 197 --------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V 232 (298)
++++|||||+|.+.++|..||..|||..++|+.|.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 127899999999999999999999999999999999
Q ss_pred EEcccccc
Q psy15187 233 SLARRQLK 240 (298)
Q Consensus 233 ~~A~~k~~ 240 (298)
.....+..
T Consensus 162 ~~~~~~~~ 169 (562)
T TIGR01628 162 GRFIKKHE 169 (562)
T ss_pred eccccccc
Confidence 87665443
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=5.5e-14 Score=142.19 Aligned_cols=96 Identities=33% Similarity=0.585 Sum_probs=87.5
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-----cCceeEEecChhhhhhhh--------------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPESSDKAI-------------------- 196 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-----k~~gfV~f~~~~~adkai-------------------- 196 (298)
..++|||+| .++|+++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|+
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 347899999 99999999999999999999999876 579999999999999887
Q ss_pred ------------------------------------------------------------------hcCCceEEEEeCCH
Q psy15187 197 ------------------------------------------------------------------TDDCARGFVTFDSP 210 (298)
Q Consensus 197 ------------------------------------------------------------------~~skGfaFV~F~~~ 210 (298)
+.++|||||+|.+.
T Consensus 257 ~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~ 336 (562)
T TIGR01628 257 RAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNP 336 (562)
T ss_pred cccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCH
Confidence 12689999999999
Q ss_pred HHHHHHHHHhCCcEECCeEEEEEEccccc
Q psy15187 211 ESSDKAITEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 211 e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
++|.+|+..|||..|+|++|.|.||..+.
T Consensus 337 ~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 337 EEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999999999999999999998643
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.53 E-value=6.4e-14 Score=139.75 Aligned_cols=95 Identities=23% Similarity=0.382 Sum_probs=86.5
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhh-------------------------
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT------------------------- 197 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~------------------------- 197 (298)
+.+|||+| +++++++|+++|++||.|.+|.|+.++++|||+|.+.++|++||.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~ 81 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK 81 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc
Confidence 46899999 999999999999999999999999999999999999999999981
Q ss_pred --------------------------------------------------cCCceEEEEeCCHHHHHHHHHHhCCcEECC
Q psy15187 198 --------------------------------------------------DDCARGFVTFDSPESSDKAITEVNGTHVQG 227 (298)
Q Consensus 198 --------------------------------------------------~skGfaFV~F~~~e~A~~Ai~~lnG~~i~G 227 (298)
...|+|||+|.+.++|.+|+..|||..|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~ 161 (481)
T TIGR01649 82 RDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYN 161 (481)
T ss_pred cCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 034799999999999999999999999964
Q ss_pred --eEEEEEEccccc
Q psy15187 228 --VKLKVSLARRQL 239 (298)
Q Consensus 228 --r~L~V~~A~~k~ 239 (298)
++|+|.|++...
T Consensus 162 ~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 162 GCCTLKIEYAKPTR 175 (481)
T ss_pred CceEEEEEEecCCC
Confidence 699999998644
No 16
>KOG0122|consensus
Probab=99.53 E-value=3.7e-14 Score=127.60 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=80.0
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.+...+.++|-|.| .+++|++|+++|.+||.|..|.|.+|+.+|. ++|||||+|.+.++|.+|
T Consensus 183 ~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~---------------~kGFAFVtF~sRddA~rA 247 (270)
T KOG0122|consen 183 MRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGL---------------SKGFAFVTFESRDDAARA 247 (270)
T ss_pred cccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCc---------------ccceEEEEEecHHHHHHH
Confidence 33445778999999 9999999999999999999999999999998 999999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k 238 (298)
|..|||+-+++-.|+|+|++++
T Consensus 248 I~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 248 IADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred HHHccCcccceEEEEEEecCCC
Confidence 9999999999999999999986
No 17
>KOG0121|consensus
Probab=99.49 E-value=4.4e-14 Score=116.13 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=73.6
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
-+.+||||||| +.++|+.|.++|+++|+|..|.|-.|+.+-- +|||+||+|-+.++|..|+.-
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kkt---------------pCGFCFVeyy~~~dA~~Alry 97 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKT---------------PCGFCFVEYYSRDDAEDALRY 97 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcC---------------ccceEEEEEecchhHHHHHHH
Confidence 35569999999 9999999999999999999998888876554 788899999999999999999
Q ss_pred hCCcEECCeEEEEEEccc
Q psy15187 220 VNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~ 237 (298)
+||+.++.++|+|.|.-.
T Consensus 98 isgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 98 ISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred hccCcccccceeeecccc
Confidence 999999999999999764
No 18
>KOG0125|consensus
Probab=99.49 E-value=1e-13 Score=129.14 Aligned_cols=97 Identities=26% Similarity=0.429 Sum_probs=79.1
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-cCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-k~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
....++|+|.| +...+-||+.+|++||.|.+|.|+.+ || |||||||+|++.++|++|-.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG------------------SKGFGFVTmen~~dadRARa 154 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG------------------SKGFGFVTMENPADADRARA 154 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC------------------CCccceEEecChhhHHHHHH
Confidence 33446899999 99999999999999999999999976 33 78889999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccccccccccCCCCccchh
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAI 256 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~~~ 256 (298)
+|||.+|.||+|.|..|..+-.............|-.+
T Consensus 155 ~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~g~~~~ 192 (376)
T KOG0125|consen 155 ELHGTVVEGRKIEVNNATARVHNKKKKVLPYPNGWKLL 192 (376)
T ss_pred HhhcceeeceEEEEeccchhhccCCcccCCCccccccc
Confidence 99999999999999999876443333333333445444
No 19
>KOG0127|consensus
Probab=99.49 E-value=9.7e-14 Score=136.25 Aligned_cols=97 Identities=29% Similarity=0.445 Sum_probs=90.9
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh---------------------
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI--------------------- 196 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai--------------------- 196 (298)
.||||++ ++++.++|.++|+.+|+|..|.++.+ +|||||+|.-.++++.|+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7999999 99999999999999999999999976 799999999999999999
Q ss_pred ---------------------------------------------------------------------hcCCceEEEEe
Q psy15187 197 ---------------------------------------------------------------------TDDCARGFVTF 207 (298)
Q Consensus 197 ---------------------------------------------------------------------~~skGfaFV~F 207 (298)
+.-||||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 22689999999
Q ss_pred CCHHHHHHHHHHhCCcEECCeEEEEEEcccccccc
Q psy15187 208 DSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 208 ~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
....+|..|+..|||+.|+||+|-|.||..+...+
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 99999999999999999999999999999877655
No 20
>KOG0149|consensus
Probab=99.46 E-value=9.5e-14 Score=124.39 Aligned_cols=76 Identities=33% Similarity=0.483 Sum_probs=70.3
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++||||| |.+..+.|+++|++||+|++..|+.|+.+|. |||||||+|.+.+.|.+|++..| -
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~r---------------skGyGfVTf~d~~aa~rAc~dp~-p 76 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGR---------------SKGYGFVTFRDAEAATRACKDPN-P 76 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCcc---------------ccceeeEEeecHHHHHHHhcCCC-C
Confidence 6999999 9999999999999999999999999999996 99999999999999999987654 6
Q ss_pred EECCeEEEEEEccc
Q psy15187 224 HVQGVKLKVSLARR 237 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~ 237 (298)
.|+||+-.|.+|.-
T Consensus 77 iIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 77 IIDGRKANCNLASL 90 (247)
T ss_pred cccccccccchhhh
Confidence 89999999998753
No 21
>KOG0113|consensus
Probab=99.43 E-value=1.1e-12 Score=121.01 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=76.1
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
+||||+. ++++|..|+..|+.||+|..|.|+.|+-+|+ ++|||||+|++.-+...|.+..+|.
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgk---------------skGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGK---------------SKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCC---------------ccceEEEEeccHHHHHHHHHhccCc
Confidence 8999997 9999999999999999999999999999998 9999999999999999999999999
Q ss_pred EECCeEEEEEEcccccc
Q psy15187 224 HVQGVKLKVSLARRQLK 240 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k~~ 240 (298)
.|+|+.|.|.+.+.+-.
T Consensus 167 ~Idgrri~VDvERgRTv 183 (335)
T KOG0113|consen 167 KIDGRRILVDVERGRTV 183 (335)
T ss_pred eecCcEEEEEecccccc
Confidence 99999999999876543
No 22
>KOG0130|consensus
Probab=99.41 E-value=2.9e-13 Score=112.33 Aligned_cols=83 Identities=22% Similarity=0.420 Sum_probs=78.2
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
...|.-|||.| ..++|+++.+.|..||+|.+|++..|+.+|| .+|||+|+|++.++|+.||.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy---------------~KGYaLvEYet~keAq~A~~~ 133 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGY---------------VKGYALVEYETLKEAQAAIDA 133 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccccccc---------------ccceeeeehHhHHHHHHHHHh
Confidence 45668999999 9999999999999999999999999999999 899999999999999999999
Q ss_pred hCCcEECCeEEEEEEccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|||..|.|..|.|.|+--+.
T Consensus 134 ~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 134 LNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred ccchhhhCCceeEEEEEecC
Confidence 99999999999999997543
No 23
>KOG0145|consensus
Probab=99.41 E-value=6e-13 Score=120.90 Aligned_cols=100 Identities=28% Similarity=0.475 Sum_probs=90.0
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh--------------
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI-------------- 196 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai-------------- 196 (298)
+...-.+.+|||.| ..+|..+|+.+|++||.|+.-+|..| +|-|||.|++.++|+.||
T Consensus 121 Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tep 200 (360)
T KOG0145|consen 121 SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEP 200 (360)
T ss_pred ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCC
Confidence 34445567899999 89999999999999999999888866 799999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy15187 197 -------------------------------------------------------------------------------- 196 (298)
Q Consensus 197 -------------------------------------------------------------------------------- 196 (298)
T Consensus 201 ItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~c 280 (360)
T KOG0145|consen 201 ITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWC 280 (360)
T ss_pred eEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeE
Confidence
Q ss_pred ------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcccc
Q psy15187 197 ------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 197 ------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k 238 (298)
++.+|||||.+.+-++|..||..|||+.++++.|.|+|...+
T Consensus 281 iFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 281 IFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 238999999999999999999999999999999999997654
No 24
>KOG4207|consensus
Probab=99.39 E-value=4.2e-13 Score=118.34 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=73.7
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
-+.|-|.| +.|+.++|+.+|++||.|-+|.|+.|+-+.- ++|||||.|....+|+.|+.+|+|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~---------------sRgFaFVrf~~k~daedA~damDG 77 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQ---------------SRGFAFVRFHDKRDAEDALDAMDG 77 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccccccccc---------------ccceeEEEeeecchHHHHHHhhcc
Confidence 36899999 9999999999999999999999999988775 999999999999999999999999
Q ss_pred cEECCeEEEEEEccc
Q psy15187 223 THVQGVKLKVSLARR 237 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~ 237 (298)
.+|+|+.|.|++|+=
T Consensus 78 ~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 78 AVLDGRELRVQMARY 92 (256)
T ss_pred eeeccceeeehhhhc
Confidence 999999999999873
No 25
>KOG0109|consensus
Probab=99.38 E-value=5.9e-13 Score=122.46 Aligned_cols=93 Identities=28% Similarity=0.474 Sum_probs=85.2
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhh--------------------------
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT-------------------------- 197 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~-------------------------- 197 (298)
.+||||| ..+++.+|+.+|++||+|++|.|+ +++|||..++...++.||.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stk 80 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTK 80 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccc
Confidence 4799999 899999999999999999999998 6899999999999999991
Q ss_pred -----------------------------cCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcccccc
Q psy15187 198 -----------------------------DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 198 -----------------------------~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.-++|+||.|.-.++|..||..|||.+|+|.+|+|.+...+-.
T Consensus 81 l~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred cccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 1588999999999999999999999999999999999876543
No 26
>PLN03213 repressor of silencing 3; Provisional
Probab=99.36 E-value=2.3e-12 Score=125.49 Aligned_cols=75 Identities=27% Similarity=0.450 Sum_probs=68.4
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCH--HHHHHHHHH
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSP--ESSDKAITE 219 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~--e~A~~Ai~~ 219 (298)
.+.+||||| +.+++++|+.+|+.||.|.+|.|++..|.| ||||+|... .++.+||..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRG-------------------FAFVEMssdddaEeeKAISa 69 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRS-------------------FAYIDFSPSSTNSLTKLFST 69 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCc-------------------eEEEEecCCcHHHHHHHHHH
Confidence 447899999 999999999999999999999999665544 599999987 689999999
Q ss_pred hCCcEECCeEEEEEEccc
Q psy15187 220 VNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~ 237 (298)
|||..|+|+.|+|..|++
T Consensus 70 LNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 70 YNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred hcCCeecCceeEEeeccH
Confidence 999999999999999986
No 27
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.3e-12 Score=117.20 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=67.0
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
.++|||+| +.+++++|+++|+.||.|.+|.|+.++. ++|||||+|.+.++|..||. |||
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~------------------~~GfAFVtF~d~eaAe~All-LnG 64 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE------------------RSQIAYVTFKDPQGAETALL-LSG 64 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC------------------CCCEEEEEeCcHHHHHHHHH-hcC
Confidence 46999999 9999999999999999999999987752 34669999999999999995 999
Q ss_pred cEECCeEEEEEEccc
Q psy15187 223 THVQGVKLKVSLARR 237 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~ 237 (298)
..|.|+.|.|.++..
T Consensus 65 ~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 65 ATIVDQSVTITPAED 79 (260)
T ss_pred CeeCCceEEEEeccC
Confidence 999999999999874
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.36 E-value=4.2e-12 Score=126.46 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=74.7
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +.+++++|+++|+.||.|..|.|+.+...|- ++|||||+|.+.++|..||..|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~---------------~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGL---------------SKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC---------------cCeEEEEEECCHHHHHHHHHHc
Confidence 3457999999 9999999999999999999999998877665 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcccc
Q psy15187 221 NGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k 238 (298)
||..|+|+.|.|.+|...
T Consensus 358 ~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 358 NGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CCCEECCeEEEEEECccC
Confidence 999999999999999754
No 29
>KOG0107|consensus
Probab=99.36 E-value=1.8e-12 Score=111.77 Aligned_cols=77 Identities=22% Similarity=0.471 Sum_probs=69.2
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
.+++||||| .++++.||+.+|..||+|.+|.|.. . +-|||||+|+++.+|+.|+..||
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-n-------------------PPGfAFVEFed~RDA~DAvr~LD 68 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-N-------------------PPGFAFVEFEDPRDAEDAVRYLD 68 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-c-------------------CCCceEEeccCcccHHHHHhhcC
Confidence 358999999 9999999999999999999998865 2 34559999999999999999999
Q ss_pred CcEECCeEEEEEEcccccc
Q psy15187 222 GTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~~ 240 (298)
|..|.|..|+|++...++.
T Consensus 69 G~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 69 GKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CccccCceEEEEeecCCcc
Confidence 9999999999999887655
No 30
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=4.8e-12 Score=92.90 Aligned_cols=68 Identities=32% Similarity=0.554 Sum_probs=60.6
Q ss_pred EEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEE
Q psy15187 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHV 225 (298)
Q Consensus 148 LfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i 225 (298)
|||+| +++++++|.++|+.||.|..+.+..++. |- ++|+|||+|.+.++|..|+..++|..|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~---------------~~~~a~v~f~~~~~a~~al~~~~~~~~ 64 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQ---------------SRGFAFVEFSSEEDAKRALELLNGKEI 64 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SS---------------EEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cc---------------cCCEEEEEeCCHHHHHHHHHHCCCcEE
Confidence 79999 9999999999999999999999998765 43 678899999999999999999999999
Q ss_pred CCeEEE
Q psy15187 226 QGVKLK 231 (298)
Q Consensus 226 ~Gr~L~ 231 (298)
+|+.|+
T Consensus 65 ~g~~l~ 70 (70)
T PF14259_consen 65 DGRKLR 70 (70)
T ss_dssp TTEEEE
T ss_pred CCEEcC
Confidence 999885
No 31
>KOG0148|consensus
Probab=99.34 E-value=2.2e-12 Score=117.70 Aligned_cols=94 Identities=22% Similarity=0.404 Sum_probs=77.1
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec-----------------C---ceeEEec----Chhhhhhhh---
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK-----------------G---RGFVTFD----SPESSDKAI--- 196 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk-----------------~---~gfV~f~----~~~~adkai--- 196 (298)
.|||||| .++||+-|..+|.+.|.|..|+|+.|. + .-||.+. +.+....|.
T Consensus 7 rtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pF 86 (321)
T KOG0148|consen 7 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPF 86 (321)
T ss_pred ceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccc
Confidence 6999999 999999999999999999999998650 1 1222222 222222222
Q ss_pred --------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEccccc
Q psy15187 197 --------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 197 --------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
+++||||||.|.+.++|+.||..|||.-|++|.|+-.||.+++
T Consensus 87 GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 87 GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred cccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 6799999999999999999999999999999999999999887
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.34 E-value=5.4e-12 Score=127.92 Aligned_cols=97 Identities=27% Similarity=0.411 Sum_probs=82.7
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCC-eeEEEEe-------eecCceeEEecChhhhhhhhh----------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGK-ICSVSME-------VEKGRGFVTFDSPESSDKAIT---------------- 197 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~-I~~v~i~-------~dk~~gfV~f~~~~~adkai~---------------- 197 (298)
..++|||+| ..+++++|.++|++|+. |+.+.+. ..+++|||+|.++++|..|+.
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 357999999 89999999999999974 4444332 237899999999999988860
Q ss_pred --------------------------------------------------cCCceEEEEeCCHHHHHHHHHHhCCcEECC
Q psy15187 198 --------------------------------------------------DDCARGFVTFDSPESSDKAITEVNGTHVQG 227 (298)
Q Consensus 198 --------------------------------------------------~skGfaFV~F~~~e~A~~Ai~~lnG~~i~G 227 (298)
..+|||||+|.+.++|.+||..|||..|+|
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~G 296 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEG 296 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 158899999999999999999999999999
Q ss_pred eEEEEEEcccccc
Q psy15187 228 VKLKVSLARRQLK 240 (298)
Q Consensus 228 r~L~V~~A~~k~~ 240 (298)
+.|+|.||.+...
T Consensus 297 r~I~V~~Akp~~~ 309 (578)
T TIGR01648 297 SEIEVTLAKPVDK 309 (578)
T ss_pred EEEEEEEccCCCc
Confidence 9999999987544
No 33
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=5.9e-12 Score=111.02 Aligned_cols=78 Identities=37% Similarity=0.568 Sum_probs=73.7
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
.++|||+| +++++++|.++|.+||.|..|.|..++.+|. ++|||||+|.+.++|..|+..|+|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~---------------~~g~~~v~f~~~~~~~~a~~~~~~ 179 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGK---------------SRGFAFVEFESEESAEKAIEELNG 179 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCc---------------cCceEEEEecCHHHHHHHHHHcCC
Confidence 58999999 9999999999999999999999999987775 999999999999999999999999
Q ss_pred cEECCeEEEEEEccc
Q psy15187 223 THVQGVKLKVSLARR 237 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~ 237 (298)
..|.|+.|.|.++..
T Consensus 180 ~~~~~~~~~v~~~~~ 194 (306)
T COG0724 180 KELEGRPLRVQKAQP 194 (306)
T ss_pred CeECCceeEeecccc
Confidence 999999999999763
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.33 E-value=8.7e-12 Score=122.73 Aligned_cols=52 Identities=35% Similarity=0.563 Sum_probs=48.3
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai 196 (298)
.++|||+| ..+++++|+++|++||.|..|.|+.+ +++|||+|.+.++|.+|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 57999999 89999999999999999999999865 578999999999999887
No 35
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=1.1e-11 Score=88.61 Aligned_cols=70 Identities=40% Similarity=0.608 Sum_probs=63.0
Q ss_pred EEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcE
Q psy15187 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTH 224 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~ 224 (298)
+|||+| ..+++++|+++|.+||.|..+.+..+. +- ++|+|||+|.+.++|..|+..++|..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~---------------~~~~~~v~f~~~~~a~~a~~~~~~~~ 63 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GK---------------SKGFAFVEFESEEDAEKAIEALNGTK 63 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CC---------------CCceEEEEeCCHHHHHHHHHHhCCcE
Confidence 489999 899999999999999999999888765 32 67889999999999999999999999
Q ss_pred ECCeEEEEE
Q psy15187 225 VQGVKLKVS 233 (298)
Q Consensus 225 i~Gr~L~V~ 233 (298)
+.|+.|.|+
T Consensus 64 ~~~~~i~v~ 72 (72)
T smart00362 64 LGGRPLRVE 72 (72)
T ss_pred ECCEEEeeC
Confidence 999999873
No 36
>KOG0111|consensus
Probab=99.30 E-value=1.7e-12 Score=115.52 Aligned_cols=81 Identities=26% Similarity=0.461 Sum_probs=74.2
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
-++||||| ..++|.-|...|-+||.|..|.|+.|-..+- +||||||+|...++|..||..||+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqk---------------HRgFgFVefe~aEDAaaAiDNMne 74 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQK---------------HRGFGFVEFEEAEDAAAAIDNMNE 74 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhccc---------------ccceeEEEeeccchhHHHhhcCch
Confidence 36999999 9999999999999999999999998855553 889999999999999999999999
Q ss_pred cEECCeEEEEEEcccccc
Q psy15187 223 THVQGVKLKVSLARRQLK 240 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~k~~ 240 (298)
.+|.||+|+|.+|++..-
T Consensus 75 sEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 75 SELFGRTIRVNLAKPEKI 92 (298)
T ss_pred hhhcceeEEEeecCCccc
Confidence 999999999999998543
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.3e-11 Score=111.95 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=66.3
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
.+.+|||+| +.+|+++|+++|+.||.|.+|.|+.|..+ .|||||+|.+.++|+.|+ .||
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et------------------~gfAfVtF~d~~aaetAl-lLn 64 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY------------------ACTAYVTFKDAYALETAV-LLS 64 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc------------------ceEEEEEECCHHHHHHHH-hcC
Confidence 457999999 99999999999999999999999988533 356999999999999998 599
Q ss_pred CcEECCeEEEEEEcc
Q psy15187 222 GTHVQGVKLKVSLAR 236 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~ 236 (298)
|..|.++.|.|..+.
T Consensus 65 Ga~l~d~~I~It~~~ 79 (243)
T PLN03121 65 GATIVDQRVCITRWG 79 (243)
T ss_pred CCeeCCceEEEEeCc
Confidence 999999999997765
No 38
>KOG0126|consensus
Probab=99.29 E-value=3.8e-13 Score=116.53 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=74.3
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
.++.-||||| ++.||.||-.+|++||+|++|.+++|+.+|- |+||||+.|++..+..-|+..|
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGK---------------SKGFaFLcYEDQRSTILAVDN~ 97 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGK---------------SKGFAFLCYEDQRSTILAVDNL 97 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCc---------------ccceEEEEecCccceEEEEecc
Confidence 4456899999 9999999999999999999999999999996 9999999999999999999999
Q ss_pred CCcEECCeEEEEEEcc
Q psy15187 221 NGTHVQGVKLKVSLAR 236 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~ 236 (298)
||..|.||.|+|....
T Consensus 98 NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 98 NGIKILGRTIRVDHVS 113 (219)
T ss_pred CCceecceeEEeeecc
Confidence 9999999999998754
No 39
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.29 E-value=1.6e-11 Score=122.51 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=68.8
Q ss_pred CCCCcEEEEcC--C-CCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--A-GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 142 ~~~~~tLfVgn--~-~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
...+++|||+| + .+++++|+++|+.||.|.+|.|+.++ +|||||+|.+.++|..||.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--------------------~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--------------------KETALIEMADPYQAQLALT 331 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--------------------CCEEEEEECCHHHHHHHHH
Confidence 34678999999 5 59999999999999999999998762 3459999999999999999
Q ss_pred HhCCcEECCeEEEEEEccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
.|||..|.|+.|+|.+++.+.
T Consensus 332 ~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred HhCCCEECCceEEEEEccccc
Confidence 999999999999999987643
No 40
>KOG0145|consensus
Probab=99.26 E-value=1.3e-11 Score=112.36 Aligned_cols=80 Identities=30% Similarity=0.459 Sum_probs=74.3
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|.|.= ..+|+++|+.+|+..|+|++|++++|+-+|. +.|||||-|.++++|++||..|||.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGq---------------SLGYGFVNYv~p~DAe~AintlNGL 106 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQ---------------SLGYGFVNYVRPKDAEKAINTLNGL 106 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeecccccc---------------ccccceeeecChHHHHHHHhhhcce
Confidence 5677754 9999999999999999999999999998886 9999999999999999999999999
Q ss_pred EECCeEEEEEEcccccc
Q psy15187 224 HVQGVKLKVSLARRQLK 240 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k~~ 240 (298)
.+...+|+|+||++...
T Consensus 107 rLQ~KTIKVSyARPSs~ 123 (360)
T KOG0145|consen 107 RLQNKTIKVSYARPSSD 123 (360)
T ss_pred eeccceEEEEeccCChh
Confidence 99999999999997543
No 41
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=3e-11 Score=85.46 Aligned_cols=56 Identities=43% Similarity=0.626 Sum_probs=48.9
Q ss_pred HHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEc
Q psy15187 160 LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235 (298)
Q Consensus 160 L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A 235 (298)
|.++|++||.|..|.+..+. .+ +|||+|.+.++|..|+..|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~-------------------~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RG-------------------FAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TT-------------------EEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CC-------------------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999887654 34 3888888899999999999999999999999986
No 42
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=2.6e-11 Score=90.10 Aligned_cols=61 Identities=23% Similarity=0.496 Sum_probs=54.5
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeeecCc--eeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeE
Q psy15187 157 EEFLRQHFS----IFGKICSVS-MEVEKGR--GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVK 229 (298)
Q Consensus 157 e~~L~~~F~----~fG~I~~v~-i~~dk~~--gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~ 229 (298)
+++|+++|+ +||.|.+|. |+.++.. +- ++|||||+|.+.++|..|+..|||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~---------------~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENH---------------KRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCC---------------CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 678999999 999999996 6666654 54 8999999999999999999999999999999
Q ss_pred EEE
Q psy15187 230 LKV 232 (298)
Q Consensus 230 L~V 232 (298)
|++
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 987
No 43
>smart00360 RRM RNA recognition motif.
Probab=99.24 E-value=3.5e-11 Score=85.46 Aligned_cols=69 Identities=41% Similarity=0.587 Sum_probs=61.1
Q ss_pred EcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECC
Q psy15187 150 VQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQG 227 (298)
Q Consensus 150 Vgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~G 227 (298)
|+| ..+++++|+++|.+||.|..|.+..++..+- ++|||||+|.+.++|..|+..|+|..++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~---------------~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGK---------------SKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCC---------------CCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 456 7889999999999999999999987765443 78889999999999999999999999999
Q ss_pred eEEEEE
Q psy15187 228 VKLKVS 233 (298)
Q Consensus 228 r~L~V~ 233 (298)
+.|.|+
T Consensus 66 ~~~~v~ 71 (71)
T smart00360 66 RPLKVK 71 (71)
T ss_pred cEEEeC
Confidence 999873
No 44
>KOG4205|consensus
Probab=99.21 E-value=2e-11 Score=115.28 Aligned_cols=101 Identities=33% Similarity=0.489 Sum_probs=90.2
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh-------------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI------------------- 196 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai------------------- 196 (298)
..++||||+ |+++++.|+++|.+||+|.+|.+|.| +++|||+|.+.+.++.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 568999999 99999999999999999999999987 699999999999999998
Q ss_pred ---------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEE
Q psy15187 197 ---------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHV 225 (298)
Q Consensus 197 ---------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i 225 (298)
.+++|||||.|.+.+.+.+++. ...+.|
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~ 163 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDF 163 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeee
Confidence 2289999999999998888654 678999
Q ss_pred CCeEEEEEEccccccccccc
Q psy15187 226 QGVKLKVSLARRQLKVAPIN 245 (298)
Q Consensus 226 ~Gr~L~V~~A~~k~~~~~~~ 245 (298)
+|+.+.|..|.++..+....
T Consensus 164 ~gk~vevkrA~pk~~~~~~~ 183 (311)
T KOG4205|consen 164 NGKKVEVKRAIPKEVMQSTK 183 (311)
T ss_pred cCceeeEeeccchhhccccc
Confidence 99999999999987766443
No 45
>KOG0108|consensus
Probab=99.19 E-value=5.8e-11 Score=116.65 Aligned_cols=82 Identities=29% Similarity=0.428 Sum_probs=77.2
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
+.||||| +++++++|.++|+..|.|.+++++.|+.+|- ++||||++|.+.++|..|+..|||.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~---------------~~G~~f~~~~~~~~~~~a~~~lNg~ 83 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK---------------PKGFGFCEFTDEETAERAIRNLNGA 83 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCC---------------cCceeeEecCchhhHHHHHHhcCCc
Confidence 7899999 9999999999999999999999999998886 9999999999999999999999999
Q ss_pred EECCeEEEEEEcccccccc
Q psy15187 224 HVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k~~~~ 242 (298)
.+.|++|+|.|+.......
T Consensus 84 ~~~gr~l~v~~~~~~~~~~ 102 (435)
T KOG0108|consen 84 EFNGRKLRVNYASNRKNAE 102 (435)
T ss_pred ccCCceEEeecccccchhH
Confidence 9999999999998765544
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.18 E-value=2.3e-10 Score=82.02 Aligned_cols=72 Identities=36% Similarity=0.582 Sum_probs=64.1
Q ss_pred EEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcE
Q psy15187 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTH 224 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~ 224 (298)
+|||+| ..+++++|+++|+.||.|..+.+..+.... ++|+|||+|.+.++|..|+..++|..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~----------------~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTK----------------SKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCC----------------cceEEEEEECCHHHHHHHHHHhCCCe
Confidence 489999 889999999999999999999988765431 46779999999999999999999999
Q ss_pred ECCeEEEEEE
Q psy15187 225 VQGVKLKVSL 234 (298)
Q Consensus 225 i~Gr~L~V~~ 234 (298)
++|+.|.|.+
T Consensus 65 ~~~~~~~v~~ 74 (74)
T cd00590 65 LGGRPLRVEF 74 (74)
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 47
>KOG0123|consensus
Probab=99.17 E-value=1.1e-10 Score=113.11 Aligned_cols=95 Identities=29% Similarity=0.516 Sum_probs=87.2
Q ss_pred cEEEEcCCCCCHHHHHHHHhccCCeeEEEEeee---cCceeEEecChhhhhhhh--------------------------
Q psy15187 146 NTIFVQGAGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAI-------------------------- 196 (298)
Q Consensus 146 ~tLfVgn~~~te~~L~~~F~~fG~I~~v~i~~d---k~~gfV~f~~~~~adkai-------------------------- 196 (298)
..|||| +++||.+|.++|+.+|+|++|++-+| -++|||.|.++.+|++||
T Consensus 2 ~sl~vg-~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~ 80 (369)
T KOG0123|consen 2 ASLYVG-PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVF 80 (369)
T ss_pred CceecC-CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceee
Confidence 358999 99999999999999999999999877 489999999999999999
Q ss_pred --------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcccccccc
Q psy15187 197 --------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 197 --------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
.-++|| ||+|++.++|.+||..|||..+.|..|.|..+..+..+.
T Consensus 81 i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 81 IKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred ecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 118999 999999999999999999999999999999988766654
No 48
>KOG0117|consensus
Probab=99.16 E-value=1.7e-10 Score=111.46 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=83.9
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCC-eeEEEEe-------eecCceeEEecChhhhhhhh----------------
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGK-ICSVSME-------VEKGRGFVTFDSPESSDKAI---------------- 196 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~-I~~v~i~-------~dk~~gfV~f~~~~~adkai---------------- 196 (298)
-.+|+||||| ...++++|.+.|.+.++ |++|.+. ++|||+||+|.++..|..+-
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 3568999999 88899999999999885 4454443 34899999999999888776
Q ss_pred ------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCe
Q psy15187 197 ------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGV 228 (298)
Q Consensus 197 ------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr 228 (298)
.+.+-||||+|.+.++|.+|++.|||+.|+|.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCc
Confidence 12688999999999999999999999999999
Q ss_pred EEEEEEcccccc
Q psy15187 229 KLKVSLARRQLK 240 (298)
Q Consensus 229 ~L~V~~A~~k~~ 240 (298)
.|.|.+|++..+
T Consensus 322 ~iEvtLAKP~~k 333 (506)
T KOG0117|consen 322 PIEVTLAKPVDK 333 (506)
T ss_pred eEEEEecCChhh
Confidence 999999998654
No 49
>KOG0124|consensus
Probab=99.15 E-value=2.5e-11 Score=114.75 Aligned_cols=77 Identities=26% Similarity=0.478 Sum_probs=71.6
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
|+||||. +.+.|+.|+..|..||+|.+|+|..|.-++. ++|||||+|+=+|.|.-|++.|||.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~k---------------HKgFAFVEYEvPEaAqLAlEqMNg~ 178 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGK---------------HKGFAFVEYEVPEAAQLALEQMNGQ 178 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeeccccccccc---------------ccceEEEEEeCcHHHHHHHHHhccc
Confidence 7999999 9999999999999999999999998877775 9999999999999999999999999
Q ss_pred EECCeEEEEEEccc
Q psy15187 224 HVQGVKLKVSLARR 237 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~ 237 (298)
+++||.|+|..-..
T Consensus 179 mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 179 MLGGRNIKVGRPSN 192 (544)
T ss_pred cccCccccccCCCC
Confidence 99999999975433
No 50
>KOG0132|consensus
Probab=99.14 E-value=2.6e-10 Score=116.11 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
-..+++|||||+ ..++|.||..+|+.||+|.+|.|+..++||||++.... +|.+|+.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~Rq---------------------dA~kalq 475 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQ---------------------DAEKALQ 475 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehh---------------------HHHHHHH
Confidence 345678999999 99999999999999999999999887777776665555 9999999
Q ss_pred HhCCcEECCeEEEEEEcccccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
+|+.+.+.+..|+|.||..+-...
T Consensus 476 kl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 476 KLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred HHhcccccceeeEEeeeccCCcch
Confidence 999999999999999999765544
No 51
>KOG0127|consensus
Probab=99.13 E-value=1.8e-10 Score=113.63 Aligned_cols=115 Identities=26% Similarity=0.445 Sum_probs=93.9
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh-
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV- 220 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l- 220 (298)
.+.+|||.| +++|+++|.++|++||+|.++.|+.++.+|. ++|.|||.|.+..+|..||...
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~---------------skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGH---------------SKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCC---------------cccceEEEeccHHHHHHHHHhcC
Confidence 447999999 9999999999999999999999999999997 9999999999999999999977
Q ss_pred ----CC-cEECCeEEEEEEcccccccccccccCCCCccchhhhcccCCCCCCCCCceeecCCCCCCCCCCC
Q psy15187 221 ----NG-THVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIFGEEPPL 286 (298)
Q Consensus 221 ----nG-~~i~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~~~a~~~s~~g~~~d~R~l~~y~~d~~~~~~~~ 286 (298)
.| ..|+||.|.|..|..+.....+.. . ...-.+.+.|+|++.++....+..++
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeq------------k-k~~Kk~~gkrNLyLa~EG~I~~gt~a 413 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKEAADMEQ------------K-KKRKKPKGKRNLYLAREGLIRDGTPA 413 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHHHHHHHH------------H-hhhhccCCccceeeeccCccccCChh
Confidence 34 789999999999998765332211 0 12234556889999988776665554
No 52
>KOG0146|consensus
Probab=99.13 E-value=4.9e-11 Score=108.90 Aligned_cols=86 Identities=30% Similarity=0.440 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
+.-++||+|||.. ....+.+|-..|-.||.|++.++..||.+.- ||+||||.|+++.+|..||
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQ---------------SKCFGFVSfDNp~SaQaAI 344 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQ---------------SKCFGFVSFDNPASAQAAI 344 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccc---------------ccceeeEecCCchhHHHHH
Confidence 4456789999999 8999999999999999999998877765554 9999999999999999999
Q ss_pred HHhCCcEECCeEEEEEEcccccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
..|||+.|+-.+|+|.+.+++..
T Consensus 345 qAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 345 QAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred HHhcchhhhhhhhhhhhcCcccc
Confidence 99999999999999999988654
No 53
>KOG0123|consensus
Probab=99.12 E-value=8.4e-11 Score=113.86 Aligned_cols=90 Identities=37% Similarity=0.606 Sum_probs=84.3
Q ss_pred EEEcC--CCCCHHHHHHHHhccCCeeEEEEeee----cCceeEEecChhhhhhhh-------------------------
Q psy15187 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPESSDKAI------------------------- 196 (298)
Q Consensus 148 LfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d----k~~gfV~f~~~~~adkai------------------------- 196 (298)
|||.| .+++..+|.++|+.||.|++|+++.+ +++ ||+|.+.++|++||
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 99999 99999999999999999999999988 577 99999999999999
Q ss_pred -----------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeE
Q psy15187 197 -----------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVK 229 (298)
Q Consensus 197 -----------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~ 229 (298)
+.++|||||.|.++++|..|+..|||..++|..
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~ 237 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKE 237 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccc
Confidence 227999999999999999999999999999999
Q ss_pred EEEEEcccc
Q psy15187 230 LKVSLARRQ 238 (298)
Q Consensus 230 L~V~~A~~k 238 (298)
|.|..+..+
T Consensus 238 ~~V~~aqkk 246 (369)
T KOG0123|consen 238 LYVGRAQKK 246 (369)
T ss_pred eeecccccc
Confidence 999887763
No 54
>KOG0105|consensus
Probab=99.10 E-value=1.3e-10 Score=101.32 Aligned_cols=77 Identities=26% Similarity=0.544 Sum_probs=68.3
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecC-ceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKG-RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~-~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
+..++||||| .++.+.+|+++|-+||.|..|.+....+ ..| |||+|+++.+|+.||..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppf-------------------afVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPF-------------------AFVEFEDPRDAEDAIYG 64 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCe-------------------eEEEecCccchhhhhhc
Confidence 3458999999 9999999999999999999998765433 444 99999999999999999
Q ss_pred hCCcEECCeEEEEEEcccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k 238 (298)
-||+.++|+.|+|++++.-
T Consensus 65 RdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 65 RDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccccccCcceEEEEeccCC
Confidence 9999999999999999863
No 55
>KOG0110|consensus
Probab=99.09 E-value=1.4e-10 Score=117.15 Aligned_cols=97 Identities=30% Similarity=0.486 Sum_probs=87.4
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec---------CceeEEecChhhhhhhh------------------
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK---------GRGFVTFDSPESSDKAI------------------ 196 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk---------~~gfV~f~~~~~adkai------------------ 196 (298)
++|||.| +++|.++|..+|..+|.|.+|.|...+ |+|||+|.+.++|..|+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 4599999 999999999999999999999887542 99999999999999998
Q ss_pred --------------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 197 --------------------------------------------------------TDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 197 --------------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
+.++|||||+|-++.+|..|+.+|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 117999999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
.++.+.||.|.+.||..-..++
T Consensus 676 ~STHlyGRrLVLEwA~~d~~~e 697 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNTME 697 (725)
T ss_pred cccceechhhheehhccchHHH
Confidence 9999999999999998755433
No 56
>KOG0114|consensus
Probab=99.06 E-value=7.2e-10 Score=88.40 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=69.2
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+.-+.-|||.| +++|.+++.++|++||.|..|+|--.++ .+|-|||.|++..+|.+|+.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~------------------TrGTAFVVYedi~dAk~A~d 75 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE------------------TRGTAFVVYEDIFDAKKACD 75 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC------------------cCceEEEEehHhhhHHHHHH
Confidence 344557899999 9999999999999999999998865433 35668999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k 238 (298)
.|+|..+.++.|.|-+-.+.
T Consensus 76 hlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 76 HLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred HhcccccCCceEEEEecCHH
Confidence 99999999999999997653
No 57
>KOG0415|consensus
Probab=99.06 E-value=2.4e-10 Score=107.75 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
-.++.+-|||.- +.++.++|.-+|+.||.|.+|.|++|+.+|- +..||||+|++.+++++|..
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgd---------------sLqyaFiEFen~escE~AyF 299 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGD---------------SLQYAFIEFENKESCEQAYF 299 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccc---------------hhheeeeeecchhhHHHHHh
Confidence 345567899996 9999999999999999999999999999986 88899999999999999999
Q ss_pred HhCCcEECCeEEEEEEccc
Q psy15187 219 EVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~ 237 (298)
.|++..|+.+.|+|.|...
T Consensus 300 KMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 300 KMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred hhcceeeccceEEeehhhh
Confidence 9999999999999999764
No 58
>KOG0147|consensus
Probab=98.98 E-value=6.2e-10 Score=109.88 Aligned_cols=76 Identities=33% Similarity=0.537 Sum_probs=71.5
Q ss_pred EEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcE
Q psy15187 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTH 224 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~ 224 (298)
.||||| +++++++|+.+|+.||.|..|.+++|-.+|- ++|||||+|.+.++|.+|+..|||.+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~---------------skgfGfi~f~~~~~ar~a~e~lngfe 344 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGR---------------SKGFGFITFVNKEDARKALEQLNGFE 344 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeecccccccc---------------ccCcceEEEecHHHHHHHHHHhccce
Confidence 399999 9999999999999999999999999987886 99999999999999999999999999
Q ss_pred ECCeEEEEEEccc
Q psy15187 225 VQGVKLKVSLARR 237 (298)
Q Consensus 225 i~Gr~L~V~~A~~ 237 (298)
|-|+.|+|....-
T Consensus 345 lAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 345 LAGRLIKVSVVTE 357 (549)
T ss_pred ecCceEEEEEeee
Confidence 9999999988654
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.90 E-value=5.9e-09 Score=103.94 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=64.5
Q ss_pred CCcEEEEcC-CCC-----------CHHHHHHHHhccCCeeEEEEeeec---CceeEEecChhhhhhhhhcCCceEEEEeC
Q psy15187 144 GGNTIFVQG-AGI-----------SEEFLRQHFSIFGKICSVSMEVEK---GRGFVTFDSPESSDKAITDDCARGFVTFD 208 (298)
Q Consensus 144 ~~~tLfVgn-~~~-----------te~~L~~~F~~fG~I~~v~i~~dk---~~gfV~f~~~~~adkai~~skGfaFV~F~ 208 (298)
+...|+|.| ... ..++|+++|++||.|+.|.|+.+. ..+. .+|||||+|.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~---------------~~G~~fV~F~ 472 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTP---------------GVGKVFLEYA 472 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCC---------------CcceEEEEEC
Confidence 456788988 321 125799999999999999998652 2232 5678999999
Q ss_pred CHHHHHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 209 SPESSDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 209 ~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
+.++|.+||..|||..|+|+.|.|.|...
T Consensus 473 ~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 473 DVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 99999999999999999999999999764
No 60
>KOG0153|consensus
Probab=98.85 E-value=1.1e-08 Score=96.50 Aligned_cols=71 Identities=32% Similarity=0.587 Sum_probs=61.0
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH-HhCC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT-EVNG 222 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~-~lnG 222 (298)
++||||| ..++|.+|+++|.+||+|.+|.++..++|+||+|.+.+ .|+.|.. .+|-
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~---------------------aAE~Aae~~~n~ 287 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTRE---------------------AAEKAAEKSFNK 287 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhH---------------------HHHHHHHhhcce
Confidence 6999999 89999999999999999999999988777776666655 7776644 4577
Q ss_pred cEECCeEEEEEEccc
Q psy15187 223 THVQGVKLKVSLARR 237 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~ 237 (298)
..|+|.+|+|.|+++
T Consensus 288 lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 288 LVINGFRLKIKWGRP 302 (377)
T ss_pred eeecceEEEEEeCCC
Confidence 889999999999998
No 61
>KOG4208|consensus
Probab=98.82 E-value=8.7e-09 Score=91.11 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=70.3
Q ss_pred cEEEEcC--CCCCHHHHHHHHhcc-CCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIF-GKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~f-G~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
.-+||+. ..+.+..+..+|.+| |.|..+++-+++.+|- |+|||||+|++.+.|.-|...||+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGN---------------SKgYAFVEFEs~eVA~IaAETMNN 114 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGN---------------SKGYAFVEFESEEVAKIAAETMNN 114 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCC---------------cCceEEEEeccHHHHHHHHHHhhh
Confidence 3578887 888999999999999 7777777779999996 999999999999999999999999
Q ss_pred cEECCeEEEEEEcccc
Q psy15187 223 THVQGVKLKVSLARRQ 238 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~k 238 (298)
+.|+|+.|.|.+-.+.
T Consensus 115 YLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 115 YLLMEHLLECHVMPPE 130 (214)
T ss_pred hhhhhheeeeEEeCch
Confidence 9999999999987664
No 62
>KOG4206|consensus
Probab=98.81 E-value=1.2e-08 Score=91.25 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=66.6
Q ss_pred EEEEcC--CCCCHHHHHH----HHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 147 TIFVQG--AGISEEFLRQ----HFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~----~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
||||.| ..+..++|+. +|++||.|+.|.+... . +.+|.|||.|.+.+.|..|+..|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~---------------KmRGQA~VvFk~~~~As~A~r~l 72 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---P---------------KMRGQAFVVFKETEAASAALRAL 72 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---C---------------CccCceEEEecChhHHHHHHHHh
Confidence 999999 8899999887 9999999999865432 1 26777999999999999999999
Q ss_pred CCcEECCeEEEEEEccccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~~ 241 (298)
+|..+.|..++|.||+.....
T Consensus 73 ~gfpFygK~mriqyA~s~sdi 93 (221)
T KOG4206|consen 73 QGFPFYGKPMRIQYAKSDSDI 93 (221)
T ss_pred cCCcccCchhheecccCccch
Confidence 999999999999999875543
No 63
>KOG4661|consensus
Probab=98.80 E-value=1.2e-08 Score=101.30 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-cCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-k~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
....+.+|||.| ..+...+|+.+|++||.|+-..|+.+ +..| .++||||++.+.++|.+||
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPG----------------aRCYGfVTMSts~eAtkCI 464 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPG----------------ARCYGFVTMSTSAEATKCI 464 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCC----------------cceeEEEEecchHHHHHHH
Confidence 345667999999 66667899999999999999999988 5556 4788999999999999999
Q ss_pred HHhCCcEECCeEEEEEEccccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
..|+-+.|+|+.|.|..++..+
T Consensus 465 ~hLHrTELHGrmISVEkaKNEp 486 (940)
T KOG4661|consen 465 EHLHRTELHGRMISVEKAKNEP 486 (940)
T ss_pred HHhhhhhhcceeeeeeecccCc
Confidence 9999999999999999987643
No 64
>KOG0124|consensus
Probab=98.79 E-value=9.5e-09 Score=97.50 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=71.9
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|||.. ++.+|+||+.+|+.||+|+.|.+-++...+- ++||||++|.+......||..||-+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~---------------HkGyGfiEy~n~qs~~eAiasMNlF 275 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG---------------HKGYGFIEYNNLQSQSEAIASMNLF 275 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCC---------------ccceeeEEeccccchHHHhhhcchh
Confidence 7899998 9999999999999999999999988743332 7999999999999999999999999
Q ss_pred EECCeEEEEEEcccccc
Q psy15187 224 HVQGVKLKVSLARRQLK 240 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k~~ 240 (298)
.++|.-|+|..+...+.
T Consensus 276 DLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 276 DLGGQYLRVGKCVTPPD 292 (544)
T ss_pred hcccceEecccccCCCc
Confidence 99999999998876443
No 65
>KOG0144|consensus
Probab=98.77 E-value=9.6e-09 Score=99.14 Aligned_cols=85 Identities=25% Similarity=0.443 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.-+.|.+|||++ .+.-+.+|-..|..||.|++.++..|+.++| +++||||.|++..+|..||.
T Consensus 420 eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnl---------------skcfgfvSyen~~sa~~aI~ 484 (510)
T KOG0144|consen 420 EGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNL---------------SKCFGFVSYENAQSAQNAIS 484 (510)
T ss_pred cCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCH---------------hhhcCcccccchhhhHHHHH
Confidence 345667799999 8999999999999999999999999999999 99999999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..|++.+|+|.+.+.+..
T Consensus 485 amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 485 AMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HhcchhhccccceEEeeeccCC
Confidence 9999999999999999887544
No 66
>KOG1548|consensus
Probab=98.76 E-value=8.8e-08 Score=90.39 Aligned_cols=100 Identities=25% Similarity=0.364 Sum_probs=89.0
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeE--------EEEeee-----cCceeEEecChhhhhhhh---------
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICS--------VSMEVE-----KGRGFVTFDSPESSDKAI--------- 196 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~--------v~i~~d-----k~~gfV~f~~~~~adkai--------- 196 (298)
.+..++.|||.| .++|-+++.++|++||-|.. |.+-++ +|-|.++|...++|+-||
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 456678899999 99999999999999999875 666665 789999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy15187 197 -------------------------------------------------------------------------------- 196 (298)
Q Consensus 197 -------------------------------------------------------------------------------- 196 (298)
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence
Q ss_pred ---------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcccccc
Q psy15187 197 ---------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 197 ---------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.++.|.+-|.|.+.++|..||+.|+|..|+||+|..++...+..
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 12899999999999999999999999999999999998776544
No 67
>KOG0146|consensus
Probab=98.67 E-value=3.7e-08 Score=90.33 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=70.2
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
+..+||||- ..-+|+|++.+|..||.|.+|.+.+.-. | .+||+|||.|.++.+|..||..|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g---------------~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-G---------------NSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-C---------------CCCCceEEEeccchHHHHHHHHhc
Confidence 557899996 8889999999999999999998876422 2 278889999999999999999999
Q ss_pred CcEEC---CeEEEEEEcccccccc
Q psy15187 222 GTHVQ---GVKLKVSLARRQLKVA 242 (298)
Q Consensus 222 G~~i~---Gr~L~V~~A~~k~~~~ 242 (298)
|.... ...|.|.||....++.
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred ccccCCCCccceEEEeccchHHHH
Confidence 98766 5789999998755543
No 68
>KOG0110|consensus
Probab=98.60 E-value=1.8e-07 Score=95.02 Aligned_cols=96 Identities=30% Similarity=0.457 Sum_probs=85.1
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhh---------------------
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT--------------------- 197 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~--------------------- 197 (298)
..+..+.|+|+| ..+..++|.++|..||.|..|.|+..-..+.|.|.+..+|.+|..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 556668899999 899999999999999999999666444558999999999999980
Q ss_pred --------------------------------------------------------------------------------
Q psy15187 198 -------------------------------------------------------------------------------- 197 (298)
Q Consensus 198 -------------------------------------------------------------------------------- 197 (298)
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence
Q ss_pred -----------------cCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcc
Q psy15187 198 -----------------DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 198 -----------------~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~ 236 (298)
.|.|||||+|.+.++|..|+..|+|+.|+|+.|.|.++.
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 045999999999999999999999999999999999998
No 69
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.57 E-value=1e-07 Score=91.77 Aligned_cols=55 Identities=25% Similarity=0.508 Sum_probs=50.5
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec------CceeEEecChhhhhhhhhc
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK------GRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk------~~gfV~f~~~~~adkai~~ 198 (298)
..++|||+| +.+|+++|+++|++||.|+.|.|+.++ ++|||+|.+.++|++||..
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 357899999 999999999999999999999999873 7999999999999999954
No 70
>KOG0151|consensus
Probab=98.56 E-value=1.4e-07 Score=95.70 Aligned_cols=76 Identities=24% Similarity=0.470 Sum_probs=65.1
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee---------cCceeEEecChhhhhhhhhcCCceEEEEeCC
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE---------KGRGFVTFDSPESSDKAITDDCARGFVTFDS 209 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d---------k~~gfV~f~~~~~adkai~~skGfaFV~F~~ 209 (298)
+-+..++|||+| +.++++.|-..|+.||+|..|+|+.. ++|| ||.|.+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cg---------------------fvafmn 228 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCG---------------------FVAFMN 228 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccc---------------------eeeehh
Confidence 345568999999 99999999999999999999999854 3455 455555
Q ss_pred HHHHHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 210 PESSDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 210 ~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
..+|+.|+..|+|..+.++.+++.|++.
T Consensus 229 R~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 229 RADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred hhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 5599999999999999999999999964
No 71
>KOG4205|consensus
Probab=98.55 E-value=1.4e-07 Score=89.32 Aligned_cols=96 Identities=31% Similarity=0.463 Sum_probs=77.2
Q ss_pred ccCCcccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCcc--------ccCCcccccCCCCCcccccccccccccCCC
Q psy15187 68 KRPRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFL--------KVSKRETNDDRTPVDKKVYGESLLTRLAPN 139 (298)
Q Consensus 68 kr~r~~erk~~~~~~~~~s~~~p~s~~~~~~~~~~~~~~~~~--------~vsr~ere~~r~~~~~~~~~~~~~~~~~~~ 139 (298)
+|+|++ +|..|......+.....+.|.++ .++|.+..+. ..+.
T Consensus 45 ~rsrgF-------------gfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~-~~~~--------------- 95 (311)
T KOG4205|consen 45 GRSRGF-------------GFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKV-GRHL--------------- 95 (311)
T ss_pred CCcccc-------------cceecCCCcchheeecccccccCCccccceeccCccccccc-cccc---------------
Confidence 788888 89999887777777777777665 4444444433 1111
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai 196 (298)
...+||||+ .++++++|+++|.+||.|..+.++.| +++|||+|++.++|++++
T Consensus 96 ----~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 96 ----RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred ----ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec
Confidence 235899999 99999999999999999999999877 689999999999999999
No 72
>KOG0106|consensus
Probab=98.53 E-value=1e-07 Score=85.65 Aligned_cols=89 Identities=25% Similarity=0.515 Sum_probs=79.6
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhh---------------------------
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI--------------------------- 196 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai--------------------------- 196 (298)
..||||+ +.+.+.+|..+|..||.|.+|.|. .++|||.|.+.-+|+.||
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 4699999 999999999999999999998665 578899999999999999
Q ss_pred ---h-----------------------------------------c------CCceEEEEeCCHHHHHHHHHHhCCcEEC
Q psy15187 197 ---T-----------------------------------------D------DCARGFVTFDSPESSDKAITEVNGTHVQ 226 (298)
Q Consensus 197 ---~-----------------------------------------~------skGfaFV~F~~~e~A~~Ai~~lnG~~i~ 226 (298)
+ . ..+++||+|...++|..|+..|+|..+.
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~ 159 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLN 159 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhc
Confidence 0 0 3689999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy15187 227 GVKLKVSLAR 236 (298)
Q Consensus 227 Gr~L~V~~A~ 236 (298)
|+.|.+....
T Consensus 160 ~~~l~~~~~~ 169 (216)
T KOG0106|consen 160 GRRISVEKNS 169 (216)
T ss_pred CceeeecccC
Confidence 9999994443
No 73
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.49 E-value=2.3e-07 Score=94.96 Aligned_cols=55 Identities=29% Similarity=0.535 Sum_probs=50.5
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhhhc
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai~~ 198 (298)
..++|||+| +++++++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|.+||..
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 347899999 99999999999999999999999976 68999999999999999944
No 74
>KOG4209|consensus
Probab=98.44 E-value=3.7e-07 Score=83.25 Aligned_cols=82 Identities=23% Similarity=0.370 Sum_probs=74.2
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
.+...+|||| +.+|.+++..+|+.||.|..+.|..|+..|- ++||+||+|.+.+.+..|+. |
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~---------------~k~~~yvef~~~~~~~~ay~-l 162 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGH---------------PKGFAYVEFSSYELVEEAYK-L 162 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCC---------------cceeEEEecccHhhhHHHhh-c
Confidence 4446899999 8888888999999999999999999988885 89999999999999999999 9
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|.|+.|.|.+.+....
T Consensus 163 ~gs~i~~~~i~vt~~r~~~p 182 (231)
T KOG4209|consen 163 DGSEIPGPAIEVTLKRTNVP 182 (231)
T ss_pred CCcccccccceeeeeeeecC
Confidence 99999999999999887533
No 75
>KOG4212|consensus
Probab=98.39 E-value=1.5e-06 Score=84.39 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=66.4
Q ss_pred cEEEEcC--CCCCHHHHHHHHh-ccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFS-IFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~-~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
..+||.| +++.+.+|+++|. +-|+|..|.+..|.. | +++|+|.|+|.++|.+++|++.||-
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-G---------------K~rGcavVEFk~~E~~qKa~E~lnk 108 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-G---------------KARGCAVVEFKDPENVQKALEKLNK 108 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-C---------------CcCCceEEEeeCHHHHHHHHHHhhh
Confidence 3599999 9999999999996 579999999988743 2 3678899999999999999999999
Q ss_pred cEECCeEEEEEEccc
Q psy15187 223 THVQGVKLKVSLARR 237 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~ 237 (298)
+.+.||+|.|.-...
T Consensus 109 ~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 109 YEVNGRELVVKEDHD 123 (608)
T ss_pred ccccCceEEEeccCc
Confidence 999999999976543
No 76
>KOG0226|consensus
Probab=98.38 E-value=3.4e-07 Score=83.42 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
+.+....+||+|. .+++.+.|...|.+|-.-...++++|+.+|- ++|||||.|.+..++..|+
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgK---------------SkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGK---------------SKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccc---------------cccceeeeecCHHHHHHHH
Confidence 3445667999998 7899999999999999999999999999996 9999999999999999999
Q ss_pred HHhCCcEECCeEEEEEE
Q psy15187 218 TEVNGTHVQGVKLKVSL 234 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~ 234 (298)
.+|||..++.++|++.-
T Consensus 250 rem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 250 REMNGKYVGSRPIKLRK 266 (290)
T ss_pred HhhcccccccchhHhhh
Confidence 99999999999998743
No 77
>KOG1457|consensus
Probab=98.34 E-value=5.3e-06 Score=74.61 Aligned_cols=84 Identities=24% Similarity=0.320 Sum_probs=68.0
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-cCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-k~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
+||||.| .|+.-.+|..+|..|---+.+.|... ++.-. .+=+|||+|.+..+|..|+.+|||
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~---------------~~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQV---------------CKPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCcc---------------ccceEEEEecchHHHHHHHHHhcC
Confidence 6999999 99999999999999977676655433 32211 234699999999999999999999
Q ss_pred cEEC---CeEEEEEEcccccccccc
Q psy15187 223 THVQ---GVKLKVSLARRQLKVAPI 244 (298)
Q Consensus 223 ~~i~---Gr~L~V~~A~~k~~~~~~ 244 (298)
..|+ +..|+|++|+...++...
T Consensus 100 vrFDpE~~stLhiElAKSNtK~kr~ 124 (284)
T KOG1457|consen 100 VRFDPETGSTLHIELAKSNTKRKRR 124 (284)
T ss_pred eeeccccCceeEeeehhcCcccccC
Confidence 9999 899999999987665543
No 78
>KOG1456|consensus
Probab=98.34 E-value=4.2e-06 Score=80.01 Aligned_cols=115 Identities=28% Similarity=0.456 Sum_probs=94.8
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhh--------------------
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI-------------------- 196 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai-------------------- 196 (298)
...+..+--|.|.| ..++|.+|-+.++.||+|..+.++..+..+.|+|.+.+.|..++
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 34455566899999 99999999999999999999999999999999999999999998
Q ss_pred ---------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEE
Q psy15187 197 ---------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHV 225 (298)
Q Consensus 197 ---------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i 225 (298)
.++--.|.|+|++.+.|++|-..|||..|
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccc
Confidence 11333799999999999999999999999
Q ss_pred C-C-eEEEEEEcccccccccccccCCCCccchh
Q psy15187 226 Q-G-VKLKVSLARRQLKVAPINDAASSTTWSAI 256 (298)
Q Consensus 226 ~-G-r~L~V~~A~~k~~~~~~~~~~~~~~~~~~ 256 (298)
. | ++|+|+||++.......++ ..+|.-.
T Consensus 185 YsGCCTLKIeyAkP~rlnV~knd---~DtwDyT 214 (494)
T KOG1456|consen 185 YSGCCTLKIEYAKPTRLNVQKND---KDTWDYT 214 (494)
T ss_pred cccceeEEEEecCcceeeeeecC---Ccccccc
Confidence 8 4 6999999998655443333 3445543
No 79
>KOG4212|consensus
Probab=98.33 E-value=9.6e-07 Score=85.70 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
..+..|+|||.| ++.|+..|++-|..||.|..+.|+.. +.. + +.|.|.++++|+.|+.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~-Gks-----------------k--GVVrF~s~edAEra~a 591 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN-GKS-----------------K--GVVRFFSPEDAERACA 591 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc-CCc-----------------c--ceEEecCHHHHHHHHH
Confidence 346679999999 99999999999999999999988533 222 2 4677777779999999
Q ss_pred HhCCcEECCeEEEEEEc
Q psy15187 219 EVNGTHVQGVKLKVSLA 235 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A 235 (298)
.|||..++|+.|.|.|+
T Consensus 592 ~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 592 LMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HhccCcccCceeeeeeC
Confidence 99999999999999874
No 80
>KOG4660|consensus
Probab=98.15 E-value=3e-06 Score=84.31 Aligned_cols=73 Identities=22% Similarity=0.373 Sum_probs=61.0
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.+......+|+|-| ..+++++|+.+|+.||+|..|.+... .+|..||+|-|..+|+.|
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~--------------------~~~~~~v~FyDvR~A~~A 128 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN--------------------KRGIVFVEFYDVRDAERA 128 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc--------------------cCceEEEEEeehHhHHHH
Confidence 33334446899999 99999999999999999999765543 344578888888899999
Q ss_pred HHHhCCcEECCeEEE
Q psy15187 217 ITEVNGTHVQGVKLK 231 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~ 231 (298)
+++||+..|.|..|+
T Consensus 129 lk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 129 LKALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHHhhhhhhc
Confidence 999999999999988
No 81
>KOG0533|consensus
Probab=98.14 E-value=9.7e-06 Score=74.34 Aligned_cols=82 Identities=18% Similarity=0.412 Sum_probs=68.6
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
..++|+|.| +.++++||+++|..||.+..+.|-.++. | .+.|.|-|.|...++|..||+.+|
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G---------------~s~Gta~v~~~r~~DA~~avk~~~ 145 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-G---------------RSLGTADVSFNRRDDAERAVKKYN 145 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-C---------------CCCccceeeecchHhHHHHHHHhc
Confidence 337899999 9999999999999999888876665532 2 256678999999999999999999
Q ss_pred CcEECCeEEEEEEccccccc
Q psy15187 222 GTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~~~ 241 (298)
|..++|+.|++.+..+....
T Consensus 146 gv~ldG~~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 146 GVALDGRPMKIEIISSPSQS 165 (243)
T ss_pred CcccCCceeeeEEecCcccc
Confidence 99999999999987764443
No 82
>KOG1190|consensus
Probab=98.05 E-value=3.4e-05 Score=74.60 Aligned_cols=76 Identities=17% Similarity=0.389 Sum_probs=68.1
Q ss_pred CcEEEEcC---CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 145 GNTIFVQG---AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 145 ~~tLfVgn---~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
++.|.|.| +.+|.+-|..+|+-||.|..|.|+.+++.- |.|.|.+...|.-|+..|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~--------------------ALIQmsd~~qAqLA~~hL~ 356 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDN--------------------ALIQMSDGQQAQLAMEHLE 356 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcc--------------------eeeeecchhHHHHHHHHhh
Confidence 67888988 899999999999999999999999876632 8888888889999999999
Q ss_pred CcEECCeEEEEEEcccccc
Q psy15187 222 GTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~~ 240 (298)
|+.|.|+.|+|.+.+.+.-
T Consensus 357 g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 357 GHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred cceecCceEEEeeccCccc
Confidence 9999999999999986543
No 83
>KOG0116|consensus
Probab=98.01 E-value=2.1e-05 Score=77.33 Aligned_cols=80 Identities=28% Similarity=0.407 Sum_probs=64.4
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec-CceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK-GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk-~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....+|||+| .+++..+|+++|..||+|....|..-. +.. ..+||||+|.+.+++..||.+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~----------------~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGK----------------NPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCC----------------cCceEEEEEeecchhhhhhhc
Confidence 3345699999 999999999999999999998877532 111 125699999999999999886
Q ss_pred hCCcEECCeEEEEEEccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~ 239 (298)
- -..|+|++|.|...++..
T Consensus 350 s-p~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 350 S-PLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred C-ccccCCeeEEEEeccccc
Confidence 4 778899999998877643
No 84
>KOG4454|consensus
Probab=97.96 E-value=3.2e-06 Score=75.81 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=65.4
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
..||||+| ..++|+.|.++|-+-|+|+.|.|..++..- .+ ||||.|.+.-...-|+.-|||
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~----------------~k-Fa~v~f~~E~sv~~a~~L~ng 71 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQE----------------QK-FAYVFFPNENSVQLAGQLENG 71 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCC----------------Cc-eeeeecccccchhhhhhhccc
Confidence 46899999 899999999999999999999887654221 23 599999999999999999999
Q ss_pred cEECCeEEEEEEccc
Q psy15187 223 THVQGVKLKVSLARR 237 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~ 237 (298)
..+.+..|.|.+-..
T Consensus 72 ~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 72 DDLEEDEEQRTLRCG 86 (267)
T ss_pred chhccchhhcccccC
Confidence 999999999987654
No 85
>KOG2314|consensus
Probab=97.85 E-value=5e-05 Score=75.94 Aligned_cols=81 Identities=22% Similarity=0.316 Sum_probs=66.8
Q ss_pred CCCCCCcEEEEcC-CCCCHHH-------HHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHH
Q psy15187 140 EKPKGGNTIFVQG-AGISEEF-------LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211 (298)
Q Consensus 140 ~~~~~~~tLfVgn-~~~te~~-------L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e 211 (298)
....-.+.|+|.| +.+...- |..+|+++|+|+...++.+-..| .+||.|++|.+..
T Consensus 53 ~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg----------------tkG~lf~E~~~~~ 116 (698)
T KOG2314|consen 53 TAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG----------------TKGYLFVEYASMR 116 (698)
T ss_pred ccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC----------------eeeEEEEEecChh
Confidence 3334456899999 6666654 56789999999999988776555 4899999999999
Q ss_pred HHHHHHHHhCCcEEC-CeEEEEEEcc
Q psy15187 212 SSDKAITEVNGTHVQ-GVKLKVSLAR 236 (298)
Q Consensus 212 ~A~~Ai~~lnG~~i~-Gr~L~V~~A~ 236 (298)
+|..|++.|||+.|+ .+++.|..-.
T Consensus 117 ~A~~aVK~l~G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 117 DAKKAVKSLNGKRLDKNHTFFVRLFK 142 (698)
T ss_pred hHHHHHHhcccceecccceEEeehhh
Confidence 999999999999999 8888887644
No 86
>KOG0120|consensus
Probab=97.73 E-value=3.6e-05 Score=76.94 Aligned_cols=85 Identities=25% Similarity=0.382 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+-..+++||+| ..+++..+.++...||++....++.+...|+ ++||||.+|-+......|+.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~---------------skg~af~ey~dpsvtd~A~a 349 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN---------------SKGFAFCEYCDPSVTDQAIA 349 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc---------------ccceeeeeeeCCcchhhhhc
Confidence 344557999999 8999999999999999999999999988888 99999999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..+++..|.|..|.....
T Consensus 350 gLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 350 GLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred ccchhhhcCceeEeehhhccch
Confidence 9999999999999999886443
No 87
>KOG4211|consensus
Probab=97.69 E-value=0.00021 Score=70.51 Aligned_cols=89 Identities=24% Similarity=0.361 Sum_probs=72.4
Q ss_pred EEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee----cCceeEEecChhhhhhhh------------------------
Q psy15187 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPESSDKAI------------------------ 196 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d----k~~gfV~f~~~~~adkai------------------------ 196 (298)
-|-+.| |.+|++||.+||+.| .|.++.+.+. .+-+||+|.+.+++++|+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~ 90 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADW 90 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccc
Confidence 344556 999999999999999 4666666654 578999999999999999
Q ss_pred ---------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEE
Q psy15187 197 ---------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHV 225 (298)
Q Consensus 197 ---------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i 225 (298)
+++.|-|||.|++.+.|++|+.. |-..|
T Consensus 91 ~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~i 169 (510)
T KOG4211|consen 91 VMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENI 169 (510)
T ss_pred cccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhh
Confidence 23889999999999999999874 55677
Q ss_pred CCeEEEEEEccc
Q psy15187 226 QGVKLKVSLARR 237 (298)
Q Consensus 226 ~Gr~L~V~~A~~ 237 (298)
+.|-|.|-.+..
T Consensus 170 GhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 170 GHRYIEVFRSSR 181 (510)
T ss_pred ccceEEeehhHH
Confidence 778787766543
No 88
>KOG1995|consensus
Probab=97.67 E-value=3.7e-05 Score=73.22 Aligned_cols=94 Identities=28% Similarity=0.328 Sum_probs=72.1
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
.....+|||-+ ..+++++|.++|.+||.|.. ++.++ .-...-+-++..+.+||-|.|.|.+...|..||..
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-----nK~t~--kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKR-----NKRTG--KPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceecc-----CCCCC--CcchhccccccccCcCCceeeeecChhhhhhhhhh
Confidence 34456899999 89999999999999998864 22221 11111122233345999999999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
+++..+.|.+|+|.+|..+...+
T Consensus 136 ~agkdf~gn~ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 136 FAGKDFCGNTIKVSLAERRTGVE 158 (351)
T ss_pred hccccccCCCchhhhhhhccCcc
Confidence 99999999999999998877544
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.64 E-value=0.00038 Score=55.32 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=64.1
Q ss_pred cEEEEcC--CCCCHHHHHHHHhcc--CCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIF--GKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~f--G~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
|||-|.| ...|.++|.+++... |..--+.++.|-..+. +.|||||-|.+++.|..-...++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~---------------N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKC---------------NLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCC---------------ceEEEEEEcCCHHHHHHHHHHHc
Confidence 6899999 889999999888763 5655666777744443 78999999999999999999999
Q ss_pred CcEEC----CeEEEEEEccccc
Q psy15187 222 GTHVQ----GVKLKVSLARRQL 239 (298)
Q Consensus 222 G~~i~----Gr~L~V~~A~~k~ 239 (298)
|..+. ...+.|.||+-|-
T Consensus 67 g~~w~~~~s~Kvc~i~yAriQG 88 (97)
T PF04059_consen 67 GKKWPNFNSKKVCEISYARIQG 88 (97)
T ss_pred CCccccCCCCcEEEEehhHhhC
Confidence 99987 5677888888653
No 90
>KOG0147|consensus
Probab=97.58 E-value=8.6e-05 Score=74.02 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
...+.-.+||+-. ..++..+|.+||+.+|.|..|.|+.|+..+- ++|.|||+|.+.+....||
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~r---------------skgi~Yvef~D~~sVp~ai 238 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRR---------------SKGIAYVEFCDEQSVPLAI 238 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchh---------------hcceeEEEEecccchhhHh
Confidence 3345556888887 8889999999999999999999999988775 8899999999999998888
Q ss_pred HHhCCcEECCeEEEEEEccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~ 237 (298)
.|.|..+.|.+|.|.....
T Consensus 239 -aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 239 -ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred -hhcCCcccCceeEecccHH
Confidence 6999999999999977553
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.58 E-value=0.00015 Score=68.75 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=58.9
Q ss_pred CCCcEEEEcC--CCCCHHH----H--HHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCc-e-EEEEeCCHHH
Q psy15187 143 KGGNTIFVQG--AGISEEF----L--RQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA-R-GFVTFDSPES 212 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~----L--~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skG-f-aFV~F~~~e~ 212 (298)
-+-+-+||-| +.+-.++ | .++|++||.|..|.|-+.....- .--| + .+|+|.+.++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~n--------------st~~h~gvYITy~~ked 177 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLN--------------STASHAGVYITYSTKED 177 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccc--------------cccccceEEEEecchHH
Confidence 3446789988 4444444 3 58999999999987654321000 0011 2 3899999999
Q ss_pred HHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 213 SDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 213 A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
|..||.+.+|..++|+.|+..|...
T Consensus 178 AarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 178 AARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred HHHHHHHhccccccCceEeeecCch
Confidence 9999999999999999999999754
No 92
>KOG0109|consensus
Probab=97.44 E-value=9.8e-05 Score=68.80 Aligned_cols=53 Identities=26% Similarity=0.449 Sum_probs=48.4
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhh
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai 196 (298)
....++|+||| ..++..+|+..|++||+|++|.|+ ++++||.|+-.++|..||
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAI 129 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHH
Confidence 44668999999 999999999999999999999987 579999999999888888
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.42 E-value=0.00019 Score=57.73 Aligned_cols=69 Identities=25% Similarity=0.522 Sum_probs=38.4
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC-
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN- 221 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln- 221 (298)
|+-|+|.| ..++.++|+++|++||.|..|.+...... |+|.|.+.+.|..|+..+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~---------------------g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTE---------------------GYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SE---------------------EEEEESS---HHHHHHHHHH
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCE---------------------EEEEECCcchHHHHHHHHHh
Confidence 46788887 88999999999999999998877654444 5555555657877777663
Q ss_pred ----CcEECCeEEEEEE
Q psy15187 222 ----GTHVQGVKLKVSL 234 (298)
Q Consensus 222 ----G~~i~Gr~L~V~~ 234 (298)
+..|.+..+.+..
T Consensus 60 ~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 60 ANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp TTTS-B-TTSSSEEEE-
T ss_pred ccCCceEEcCceEEEEE
Confidence 3345555555544
No 94
>KOG0120|consensus
Probab=97.40 E-value=0.00035 Score=69.96 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=52.9
Q ss_pred HHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 160 LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 160 L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
++.-+++||.|..|.|.++-..++-++ ..|-.||+|.+.+++++|..+|+|..|.||++...|-..
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~------------G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVP------------GTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCC------------CcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 455577999999999987733332222 456699999999999999999999999999999988653
No 95
>KOG0131|consensus
Probab=97.40 E-value=0.00012 Score=64.00 Aligned_cols=44 Identities=27% Similarity=0.408 Sum_probs=40.1
Q ss_pred hhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcc
Q psy15187 193 DKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 193 dkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~ 236 (298)
|+..+.+.|||||+|.+.++|+-||+-||...+.|++|+|..+.
T Consensus 44 Drv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 44 DRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred hhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34446799999999999999999999999999999999999987
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.40 E-value=0.001 Score=51.55 Aligned_cols=68 Identities=26% Similarity=0.389 Sum_probs=45.8
Q ss_pred cEEEEcC--CCCCHHH----HHHHHhccC-CeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 146 NTIFVQG--AGISEEF----LRQHFSIFG-KICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 146 ~tLfVgn--~~~te~~----L~~~F~~fG-~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
+.|||.| .+.+-.. |++++.-|| .|..|. .|-|+|.|.+.+.|..|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------------------------~~tAilrF~~~~~A~RA~K 57 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------------------------GGTAILRFPNQEFAERAQK 57 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------------------TT-EEEEESSHHHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------------------------CCEEEEEeCCHHHHHHHHH
Confidence 5799999 4455444 777888886 676651 2337788888889999999
Q ss_pred HhCCcEECCeEEEEEEcccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k 238 (298)
.|+|..+.|+.|.|++....
T Consensus 58 RmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 58 RMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp HHTT--SSSS--EEESS--S
T ss_pred hhcccccccceEEEEEcCCc
Confidence 99999999999999998653
No 97
>KOG4210|consensus
Probab=97.37 E-value=0.00011 Score=69.21 Aligned_cols=81 Identities=23% Similarity=0.375 Sum_probs=72.3
Q ss_pred CCcEEE-EcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 144 GGNTIF-VQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 144 ~~~tLf-Vgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..-++| |+| ..+++++|+.+|..+|.|..+.++.+...|- ++|||+|.|.....+..++..
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~---------------~kg~a~~~~~~~~~~~~~~~~- 246 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGD---------------SKGFAYVDFSAGNSKKLALND- 246 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccc---------------hhhhhhhhhhhchhHHHHhhc-
Confidence 334566 888 9999999999999999999999998888876 899999999999999999887
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
++..+.|+++.|.+..+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred ccCcccCcccccccCCCCcc
Confidence 89999999999999988765
No 98
>KOG1457|consensus
Probab=97.25 E-value=0.00028 Score=63.74 Aligned_cols=65 Identities=18% Similarity=0.371 Sum_probs=52.0
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
+...||||.| ..++|++|+.+|+.|--...++|-...|.. .|||+|++.+.|..|+..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~-------------------vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMP-------------------VAFADFEEIEQATDAMNHL 268 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcc-------------------eEeecHHHHHHHHHHHHHh
Confidence 3445899999 999999999999999766655554333333 3999999999999999999
Q ss_pred CCcEEC
Q psy15187 221 NGTHVQ 226 (298)
Q Consensus 221 nG~~i~ 226 (298)
+|..|.
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 988774
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.21 E-value=0.00086 Score=47.32 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=36.5
Q ss_pred cEEEEcC-CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhh
Q psy15187 146 NTIFVQG-AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195 (298)
Q Consensus 146 ~tLfVgn-~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adka 195 (298)
+.|-|.| ..-..+++..+|..||+|..+.+....+..+|+|.+..+|++|
T Consensus 2 ~wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~A 52 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKA 52 (53)
T ss_pred cEEEEEeECchHHHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhh
Confidence 4677888 4445566788999999999988875567777666666655544
No 100
>KOG1190|consensus
Probab=96.95 E-value=0.0013 Score=63.96 Aligned_cols=73 Identities=22% Similarity=0.454 Sum_probs=63.0
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
-.++|+| +-++-+-|..+|++||.|..| |-..++.|| .|.|.|.+.+.|..|-..|+|.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKI-iTF~Knn~F------------------QALvQy~d~~sAq~AK~aLdGq 211 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKI-ITFTKNNGF------------------QALVQYTDAVSAQAAKLALDGQ 211 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEE-EEEecccch------------------hhhhhccchhhHHHHHHhccCC
Confidence 4778889 999999999999999999997 444577777 5899999999999999999999
Q ss_pred EEC-C-eEEEEEEccc
Q psy15187 224 HVQ-G-VKLKVSLARR 237 (298)
Q Consensus 224 ~i~-G-r~L~V~~A~~ 237 (298)
-|. | ++|+|+|..-
T Consensus 212 nIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 212 NIYNGCCTLRIDFSKL 227 (492)
T ss_pred cccCceeEEEeehhhc
Confidence 887 3 6889988754
No 101
>KOG1456|consensus
Probab=96.94 E-value=0.0051 Score=59.32 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=66.3
Q ss_pred CCCCCCcEEEEcC---CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 140 EKPKGGNTIFVQG---AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 140 ~~~~~~~tLfVgn---~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.+..+++-+.|.| -.++-+.|..+|..||.|..|+.|+.+. | -|.|++.+..+.++|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-g-------------------tamVemgd~~aver~ 341 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-G-------------------TAMVEMGDAYAVERA 341 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-c-------------------eeEEEcCcHHHHHHH
Confidence 4556788999999 6788899999999999999999987643 2 267777888899999
Q ss_pred HHHhCCcEECCeEEEEEEccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~ 237 (298)
+..||+..+-|.+|.|.+.+.
T Consensus 342 v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 342 VTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred HHHhccCccccceEEEeeccc
Confidence 999999999999999988764
No 102
>KOG4206|consensus
Probab=96.83 E-value=0.0043 Score=55.99 Aligned_cols=75 Identities=17% Similarity=0.319 Sum_probs=63.8
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
.+++..||+.| ..++.+.|..+|.+|+-...|+++..+. |.|||+|.+...|..|...
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~--------------------~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS--------------------GIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC--------------------ceeEEecchhhhhHHHhhh
Confidence 56678999999 8888889999999999999998876533 3388888888899999999
Q ss_pred hCCcEEC-CeEEEEEEcc
Q psy15187 220 VNGTHVQ-GVKLKVSLAR 236 (298)
Q Consensus 220 lnG~~i~-Gr~L~V~~A~ 236 (298)
++|..|- .+.+.|.++.
T Consensus 203 lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITFAK 220 (221)
T ss_pred hccceeccCceEEecccC
Confidence 9999988 8899998875
No 103
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.53 E-value=0.0071 Score=48.35 Aligned_cols=82 Identities=24% Similarity=0.332 Sum_probs=50.8
Q ss_pred cEEEEcC-CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcE
Q psy15187 146 NTIFVQG-AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTH 224 (298)
Q Consensus 146 ~tLfVgn-~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~ 224 (298)
+-|.|-| +......+-++|++||.|++..-......|+..+. +.....+--|+|.++.+|.+||. -||..
T Consensus 7 ~wVtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~--------~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i 77 (100)
T PF05172_consen 7 TWVTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYP--------IPSGGNWIHITYDNPLSAQRALQ-KNGTI 77 (100)
T ss_dssp CEEEEE---GGGHHHHHHHHHCCS-EECEEGGG------------------E-CCTTEEEEEESSHHHHHHHHT-TTTEE
T ss_pred eEEEEEccCHHHHHHHHHHHHhcceEEEeeccccccccccccc--------CCCCCCEEEEECCCHHHHHHHHH-hCCeE
Confidence 5688889 66688889999999999988752222122211110 00123457888999999999987 69999
Q ss_pred ECCe-EEEEEEcc
Q psy15187 225 VQGV-KLKVSLAR 236 (298)
Q Consensus 225 i~Gr-~L~V~~A~ 236 (298)
|+|. .+-|.++.
T Consensus 78 ~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 78 FSGSLMVGVKPCD 90 (100)
T ss_dssp ETTCEEEEEEE-H
T ss_pred EcCcEEEEEEEcH
Confidence 9985 55577764
No 104
>KOG0128|consensus
Probab=96.47 E-value=0.00034 Score=72.98 Aligned_cols=95 Identities=22% Similarity=0.359 Sum_probs=82.6
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEee----e--cCceeEEecChhhhhhhh------------------
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEV----E--KGRGFVTFDSPESSDKAI------------------ 196 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~----d--k~~gfV~f~~~~~adkai------------------ 196 (298)
+..+++||.| ..+.+.+|...|..||.|..+.+.. + +|.|||.|...+.+.+||
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~ 744 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGP 744 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCC
Confidence 3447899999 9999999999999999988876651 1 799999999999999999
Q ss_pred -----------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 197 -----------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 197 -----------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
++++|-|||.|.+..++.+++..+++..+.-+.+.|....+
T Consensus 745 pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 745 PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 34899999999999999999999998888877788877655
No 105
>KOG3152|consensus
Probab=96.32 E-value=0.002 Score=59.13 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=58.3
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec---------CceeEEecChhhhhhhhhcCCceEEEEeCCHHHHH
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK---------GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk---------~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~ 214 (298)
.-||+++ +.+.-..|+++|++||.|-.|.+-... +.|+-...-.+ |.|+|.+...|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~E------------GWvEF~~KrvAK 142 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSE------------GWVEFISKRVAK 142 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchh------------HHHHHHHHHHHH
Confidence 4699999 999999999999999999999887542 22332333333 889999999999
Q ss_pred HHHHHhCCcEECCeE
Q psy15187 215 KAITEVNGTHVQGVK 229 (298)
Q Consensus 215 ~Ai~~lnG~~i~Gr~ 229 (298)
.+...|||..|+|+.
T Consensus 143 ~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 143 RIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHhCCCccCCCC
Confidence 999999999999853
No 106
>KOG1996|consensus
Probab=96.17 E-value=0.014 Score=54.80 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=49.4
Q ss_pred HHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEc
Q psy15187 157 EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235 (298)
Q Consensus 157 e~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A 235 (298)
++++.+-.++||.|..|.|...-++-- +.++ --||+|...++|.+|+-.|||..|+||.+...|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~---------deav-----RiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPE---------DEAV-----RIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCcc---------chhh-----eeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 445778889999999987765522211 1111 1699999999999999999999999999887664
No 107
>KOG4849|consensus
Probab=96.06 E-value=0.0053 Score=58.73 Aligned_cols=71 Identities=10% Similarity=0.152 Sum_probs=57.1
Q ss_pred EEEEcC--CCCCHHHHHHHHhccC--CeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 147 TIFVQG--AGISEEFLRQHFSIFG--KICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~~F~~fG--~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
.+|||| |++|++||.+.....| .|.++++..++-.|. ++|||+|...+.....+.+.-|--
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQ---------------SKG~AL~~~~SdAa~Kq~MeiLP~ 146 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQ---------------SKGYALLVLNSDAAVKQTMEILPT 146 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCc---------------ccceEEEEecchHHHHHHHHhccc
Confidence 689999 9999999999988777 444555555555564 999999999999988999998999
Q ss_pred cEECCeEEEE
Q psy15187 223 THVQGVKLKV 232 (298)
Q Consensus 223 ~~i~Gr~L~V 232 (298)
..|+|..-.|
T Consensus 147 k~iHGQ~P~V 156 (498)
T KOG4849|consen 147 KTIHGQSPTV 156 (498)
T ss_pred ceecCCCCee
Confidence 9999864433
No 108
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.01 E-value=0.03 Score=47.63 Aligned_cols=56 Identities=29% Similarity=0.437 Sum_probs=39.9
Q ss_pred HHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcccc
Q psy15187 159 FLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 159 ~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k 238 (298)
+|-+.|..||+|+-|+++- +.-+ |+|.+.+.|-+|+. |+|..++|+.|+|.+..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~--~~mw---------------------VTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG--DTMW---------------------VTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET--TCEE---------------------EEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeC--CeEE---------------------EEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 5777899999998877653 3445 45555558888876 9999999999999987763
No 109
>KOG4307|consensus
Probab=95.95 E-value=0.022 Score=58.79 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=60.7
Q ss_pred CCCc-EEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 143 KGGN-TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 143 ~~~~-tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..++ -|-|.| ++++-+|+-+||..|-.+-.-.+++-...|. +.|-+.|.|++.++|..|...
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~---------------pTGe~mvAfes~~eAr~A~~d 928 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGV---------------PTGECMVAFESQEEARRASMD 928 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCC---------------cccceeEeecCHHHHHhhhhc
Confidence 4455 555666 9999999999999997665433333333343 667799999999999999999
Q ss_pred hCCcEECCeEEEEEE
Q psy15187 220 VNGTHVQGVKLKVSL 234 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~ 234 (298)
|++..|..+.+.|.+
T Consensus 929 l~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 929 LDGQKIRNRVVSLRI 943 (944)
T ss_pred cccCcccceeEEEEe
Confidence 999999999998865
No 110
>KOG2202|consensus
Probab=95.92 E-value=0.0038 Score=57.34 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=47.5
Q ss_pred HHHHHHh-ccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcc
Q psy15187 159 FLRQHFS-IFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 159 ~L~~~F~-~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~ 236 (298)
+|...|+ +||+|++++|-.+ -+. +-.|-++|.|...++|+.|+..|||..+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~N--l~~--------------hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN--LGD--------------HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc--cch--------------hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 8999999755433 222 245668888888889999999999999999999998853
No 111
>KOG2416|consensus
Probab=95.80 E-value=0.015 Score=59.00 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=57.9
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHh-ccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFS-IFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~-~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
....++-|||.| .-+|.-.|+++++ .+|.|++. ++|+-.. .|||.|.+.++|...+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIKS-------------------hCyV~yss~eEA~atr 498 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIKS-------------------HCYVSYSSVEEAAATR 498 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhhc-------------------ceeEecccHHHHHHHH
Confidence 345567899999 8899999999999 56677665 3343222 2667777777999999
Q ss_pred HHhCCcEEC---CeEEEEEEcccc
Q psy15187 218 TEVNGTHVQ---GVKLKVSLARRQ 238 (298)
Q Consensus 218 ~~lnG~~i~---Gr~L~V~~A~~k 238 (298)
.+|||..|- ++-|.|.|+...
T Consensus 499 ~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 499 EALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred HHHhccccCCCCCceeEeeecchh
Confidence 999999875 678888887653
No 112
>KOG0129|consensus
Probab=95.53 E-value=0.029 Score=56.11 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=46.4
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHh-ccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFS-IFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~-~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
-.+..|||||| .-++.++|..+|. -||-|..+-|.+|..+.| ++|-|=|+|.+...-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY---------------PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY---------------PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC---------------CCCcceeeecccHHHHHHHh
Confidence 34457999999 8899999999999 799999999998854554 55555555555555555554
No 113
>KOG0112|consensus
Probab=95.49 E-value=0.0039 Score=65.66 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=83.0
Q ss_pred CCCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec-CceeEEecChhhhhhhhhcCCceEEEEeCCHHHHH
Q psy15187 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK-GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214 (298)
Q Consensus 138 ~~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk-~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~ 214 (298)
+......+.+||+|| ..+++.+|+..|..||.|.+|.|...+ +.+ -.||||.|-+.+.+-
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~e-----------------sa~~f~~~~n~dmtp 427 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTE-----------------SAYAFVSLLNTDMTP 427 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcc-----------------cchhhhhhhccccCc
Confidence 344556678999999 999999999999999999999887652 222 234899999999999
Q ss_pred HHHHHhCCcEECCeEEEEEEcccccccccccccCCCCccchhhhcc
Q psy15187 215 KAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQ 260 (298)
Q Consensus 215 ~Ai~~lnG~~i~Gr~L~V~~A~~k~~~~~~~~~~~~~~~~~~a~~~ 260 (298)
.|..++.|..|..-.+++.+..++.......+..+...|.......
T Consensus 428 ~ak~e~s~~~I~~g~~r~glG~~kst~ttr~~sgglg~w~p~~~l~ 473 (975)
T KOG0112|consen 428 SAKFEESGPLIGNGTHRIGLGQPKSTPTTRLQSGGLGPWSPVSRLN 473 (975)
T ss_pred ccchhhcCCccccCcccccccccccccceeeccCCCCCCChHHHHH
Confidence 9999999999997678887775544444555667788888876655
No 114
>KOG2068|consensus
Probab=95.31 E-value=0.0046 Score=58.74 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=60.2
Q ss_pred CCCcEEEEcC---CCCCHHHHH--HHHhccCCeeEEEEeeec----CceeEEecChhhhhhhhhcCCceEEEEeCCHHHH
Q psy15187 143 KGGNTIFVQG---AGISEEFLR--QHFSIFGKICSVSMEVEK----GRGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213 (298)
Q Consensus 143 ~~~~tLfVgn---~~~te~~L~--~~F~~fG~I~~v~i~~dk----~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A 213 (298)
-+.+-+||-| .-..+..|. ++|++||.|..|.+-.+. +-++ ..-++|+|...++|
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~----------------~~s~yITy~~~eda 138 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG----------------TCSVYITYEEEEDA 138 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC----------------CCcccccccchHhh
Confidence 4446678877 335555564 589999999999877654 2221 12289999999999
Q ss_pred HHHHHHhCCcEECCeEEEEEEccc
Q psy15187 214 DKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 214 ~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
..||...+|..++|+.|+..++..
T Consensus 139 ~rci~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 139 DRCIDDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred hhHHHHhhhHHhhhhhhHHhhCCC
Confidence 999999999999999988888765
No 115
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.28 E-value=0.09 Score=38.41 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=39.3
Q ss_pred cEEEEcC-CCCCHHHHHHHHhcc---CCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 146 NTIFVQG-AGISEEFLRQHFSIF---GKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 146 ~tLfVgn-~~~te~~L~~~F~~f---G~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
.+|+|.| ..++.++++.+|..| .....|..+-|.. +-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS----------------------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDELSTDDIKAYFSEYFDEEGPFRIEWIDDTS----------------------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhcccCCCceEEEecCCc----------------------EEEEECCHHHHHHHHHcC
Confidence 5799999 999999999999999 1244676666654 334566666888887654
No 116
>KOG1365|consensus
Probab=95.15 E-value=0.049 Score=52.91 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=71.8
Q ss_pred CcEEEEc--C--CCCCHHHHHHHHhccC----CeeEEEEe-e-e---cCceeEEecChhhhhhhh---------------
Q psy15187 145 GNTIFVQ--G--AGISEEFLRQHFSIFG----KICSVSME-V-E---KGRGFVTFDSPESSDKAI--------------- 196 (298)
Q Consensus 145 ~~tLfVg--n--~~~te~~L~~~F~~fG----~I~~v~i~-~-d---k~~gfV~f~~~~~adkai--------------- 196 (298)
.+.+.|. | ++.++.++.+||.+-- -.+.|-.+ + | .|-+||.|...++|+.|+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445554 6 9999999999997432 33344333 2 2 578999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy15187 197 -------------------------------------------------------------------------------- 196 (298)
Q Consensus 197 -------------------------------------------------------------------------------- 196 (298)
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence
Q ss_pred --hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcc
Q psy15187 197 --TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 197 --~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~ 236 (298)
|++.|-|||.|.+.+.|..|....+.+...+|-|.|--+.
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 3488999999999999999999998888878888875543
No 117
>KOG0129|consensus
Probab=95.10 E-value=0.051 Score=54.38 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=53.1
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee---cCceeEEecChhhhhhhhhcCCc---eEEEEeCCHH
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAITDDCA---RGFVTFDSPE 211 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d---k~~gfV~f~~~~~adkai~~skG---faFV~F~~~e 211 (298)
..++-.++||||| ++++|+.|...|..||.+.- ..... ++.. .++| |+|+.|++..
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~---------------ppkGs~~YvflvFe~E~ 317 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRA---------------PPKGSYGYVFLVFEDER 317 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccC---------------CCCCcccEEEEEecchH
Confidence 3445567999999 99999999999999998753 23211 1111 2566 9999999988
Q ss_pred HHHHHHHHhCCcEECCeEEEEEEcc
Q psy15187 212 SSDKAITEVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 212 ~A~~Ai~~lnG~~i~Gr~L~V~~A~ 236 (298)
....-|.++.- +...+.+.+..
T Consensus 318 sV~~Ll~aC~~---~~~~~yf~vss 339 (520)
T KOG0129|consen 318 SVQSLLSACSE---GEGNYYFKVSS 339 (520)
T ss_pred HHHHHHHHHhh---cccceEEEEec
Confidence 87776665532 44444444443
No 118
>KOG0112|consensus
Probab=94.54 E-value=0.11 Score=55.19 Aligned_cols=74 Identities=22% Similarity=0.440 Sum_probs=61.9
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...+.||||| .++....|...|..||.|..|.+ +++.-| ++|.|.+...|+.|+..|
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~hgq~y-------------------ayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RHGQPY-------------------AYIQYESPPAAQAATHDM 511 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeec--ccCCcc-------------------eeeecccCccchhhHHHH
Confidence 3457899999 88999999999999999998654 444444 777777777999999999
Q ss_pred CCcEECC--eEEEEEEccc
Q psy15187 221 NGTHVQG--VKLKVSLARR 237 (298)
Q Consensus 221 nG~~i~G--r~L~V~~A~~ 237 (298)
-|..|+| +.|.|.||..
T Consensus 512 rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 512 RGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred hcCcCCCCCcccccccccC
Confidence 9999994 7899999875
No 119
>KOG1855|consensus
Probab=94.48 E-value=0.036 Score=54.41 Aligned_cols=74 Identities=23% Similarity=0.210 Sum_probs=53.1
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-----cCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-----k~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~ 215 (298)
-++.+|.+.| .+-.-+.|.++|+.||.|..|+|... ...+|-. ...+-..+-+|||+|...+.|.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~-------~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPK-------KYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCc-------cchhhhhhhhhhhhhhhhHHHHH
Confidence 4678999999 77777999999999999999998754 1222200 00000124469999999999999
Q ss_pred HHHHhCCc
Q psy15187 216 AITEVNGT 223 (298)
Q Consensus 216 Ai~~lnG~ 223 (298)
|...||..
T Consensus 302 A~e~~~~e 309 (484)
T KOG1855|consen 302 ARELLNPE 309 (484)
T ss_pred HHHhhchh
Confidence 98877543
No 120
>KOG2193|consensus
Probab=94.26 E-value=0.017 Score=56.64 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=73.0
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhc-------------------------
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD------------------------- 198 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~------------------------- 198 (298)
+++|+|| +.++..+|..+|...-.-.+-.++...+++||.+.+...|.++|..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsr 81 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSR 81 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhh
Confidence 5799999 9999999999998763333334555689999999999999999910
Q ss_pred ------------------------------------CCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 199 ------------------------------------DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 199 ------------------------------------skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
-....-|+|...+.+..||..+||..+....++|.|-..
T Consensus 82 k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 112234567788888999999999999999999999653
No 121
>KOG0106|consensus
Probab=94.02 E-value=0.027 Score=50.95 Aligned_cols=39 Identities=33% Similarity=0.631 Sum_probs=36.9
Q ss_pred CCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 199 skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
-.||+||+|.+..+|..||..+||..|.|-.+.|.|++.
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 579999999999999999999999999998899999986
No 122
>KOG2135|consensus
Probab=93.47 E-value=0.048 Score=54.12 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=47.7
Q ss_pred CCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEE
Q psy15187 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSL 234 (298)
Q Consensus 155 ~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~ 234 (298)
-+-.+|..+|.+||.|..|.|-..--. |.|+|.+..+|-.|.. ..|..|+|+.|+|-|
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~~~~~~---------------------a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVDYSSLH---------------------AVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred chHhhhhhhhhhcCccccccccCchhh---------------------heeeeeccccccchhc-cccceecCceeEEEE
Confidence 466789999999999999977544233 5566666668866643 689999999999999
Q ss_pred cccc
Q psy15187 235 ARRQ 238 (298)
Q Consensus 235 A~~k 238 (298)
..+-
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 8763
No 123
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.22 E-value=0.26 Score=43.56 Aligned_cols=62 Identities=27% Similarity=0.308 Sum_probs=44.1
Q ss_pred CHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC--CcEECCeEEEEE
Q psy15187 156 SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN--GTHVQGVKLKVS 233 (298)
Q Consensus 156 te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln--G~~i~Gr~L~V~ 233 (298)
..+.|+++|..|+.+.....+ ++++- ..|.|.+.++|..|...|+ +..++|..|+|.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L--~sFrR-------------------i~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~y 66 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL--KSFRR-------------------IRVVFESPESAQRARQLLHWDGTSFNGKRLRVY 66 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE--TTTTE-------------------EEEE-SSTTHHHHHHHTST--TSEETTEE-EEE
T ss_pred hHHHHHHHHHhcCCceEEEEc--CCCCE-------------------EEEEeCCHHHHHHHHHHhcccccccCCCceEEE
Confidence 347899999999999887655 34444 6777788889999999999 999999999999
Q ss_pred Ecccc
Q psy15187 234 LARRQ 238 (298)
Q Consensus 234 ~A~~k 238 (298)
|+...
T Consensus 67 f~~~~ 71 (184)
T PF04847_consen 67 FGQPT 71 (184)
T ss_dssp ----S
T ss_pred Ecccc
Confidence 98543
No 124
>KOG0105|consensus
Probab=92.96 E-value=0.58 Score=41.58 Aligned_cols=70 Identities=17% Similarity=0.324 Sum_probs=55.2
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
+....|.|.| ..-+++||+++..+-|.|....+.+| |+|.|+|-..++.+-||..|
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----------------------g~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----------------------GVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----------------------cceeeeeeehhhHHHHHHhh
Confidence 4446899999 89999999999999999988877665 33677777777999999999
Q ss_pred CCcEEC--CeEEEEEE
Q psy15187 221 NGTHVQ--GVKLKVSL 234 (298)
Q Consensus 221 nG~~i~--Gr~L~V~~ 234 (298)
+...+. |-...+.+
T Consensus 171 d~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 171 DDQKFRSEGETAYIRV 186 (241)
T ss_pred ccccccCcCcEeeEEe
Confidence 887776 55444443
No 125
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.80 E-value=0.8 Score=33.84 Aligned_cols=60 Identities=15% Similarity=0.410 Sum_probs=47.6
Q ss_pred EEcCCCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCe
Q psy15187 149 FVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGV 228 (298)
Q Consensus 149 fVgn~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr 228 (298)
||-...++-++++..+..|+-.. | . +..+|| ||.|.+..+|++|....||..+.+.
T Consensus 6 ~vp~~~~~v~d~K~~Lr~y~~~~-I--~-~d~tGf--------------------YIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 6 FVPVHGVTVEDFKKRLRKYRWDR-I--R-DDRTGF--------------------YIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred cCCCCCccHHHHHHHHhcCCcce-E--E-ecCCEE--------------------EEEECChHHHHHHHHhcCCCEEEEE
Confidence 44446788999999999997542 2 2 356676 8888888899999999999999988
Q ss_pred EEEE
Q psy15187 229 KLKV 232 (298)
Q Consensus 229 ~L~V 232 (298)
.|.+
T Consensus 62 ~m~M 65 (66)
T PF11767_consen 62 RMQM 65 (66)
T ss_pred EEEe
Confidence 8764
No 126
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.22 E-value=0.89 Score=33.87 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=38.1
Q ss_pred EEEEcC---CCCCHHHHHHHHhccCCeeE-----EEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 147 TIFVQG---AGISEEFLRQHFSIFGKICS-----VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 147 tLfVgn---~~~te~~L~~~F~~fG~I~~-----v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
+|||.- ..++..+|-.++...+.|.. |.|. ..+ .||+-... .|..++.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~---------------------S~vev~~~-~a~~v~~ 57 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNF---------------------SFVEVPEE-VAEKVLE 57 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS----------------------EEEEE-TT--HHHHHH
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeE---------------------EEEEECHH-HHHHHHH
Confidence 678774 89999999999998876543 3332 233 55555544 5888999
Q ss_pred HhCCcEECCeEEEEEEc
Q psy15187 219 EVNGTHVQGVKLKVSLA 235 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A 235 (298)
.|++..+.|+.|+|+.|
T Consensus 58 ~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 58 ALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHTT--SSS----EEE-
T ss_pred HhcCCCCCCeeEEEEEC
Confidence 99999999999999875
No 127
>KOG4285|consensus
Probab=90.81 E-value=0.64 Score=44.05 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=50.5
Q ss_pred EEEEcC-CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEE
Q psy15187 147 TIFVQG-AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHV 225 (298)
Q Consensus 147 tLfVgn-~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i 225 (298)
=|-|-| .--.-..|..+|++||.|++.... .+..| -.|.|.+.-+|++||. -||..|
T Consensus 199 WVTVfGFppg~~s~vL~~F~~cG~Vvkhv~~--~ngNw-------------------MhirYssr~~A~KALs-kng~ii 256 (350)
T KOG4285|consen 199 WVTVFGFPPGQVSIVLNLFSRCGEVVKHVTP--SNGNW-------------------MHIRYSSRTHAQKALS-KNGTII 256 (350)
T ss_pred eEEEeccCccchhHHHHHHHhhCeeeeeecC--CCCce-------------------EEEEecchhHHHHhhh-hcCeee
Confidence 355557 666777899999999999997554 33333 6677788889999987 689999
Q ss_pred CCeE-EEEEEccccc
Q psy15187 226 QGVK-LKVSLARRQL 239 (298)
Q Consensus 226 ~Gr~-L~V~~A~~k~ 239 (298)
+|.. |-|.-+..+.
T Consensus 257 ~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 257 DGDVMIGVKPCTDKS 271 (350)
T ss_pred ccceEEeeeecCCHH
Confidence 9754 3455444433
No 128
>KOG0115|consensus
Probab=90.48 E-value=0.27 Score=45.47 Aligned_cols=59 Identities=27% Similarity=0.496 Sum_probs=45.3
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-cCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-k~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
..|||.| ..++.+.|.+.|..||+|....+..| ++. +.|-++|.|.+.-.|.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k-----------------~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGK-----------------PTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccc-----------------ccccchhhhhcchhHHHHHHHhc
Confidence 5799999 88999999999999999998766655 221 12237777777778888877774
No 129
>KOG4211|consensus
Probab=90.01 E-value=0.55 Score=46.99 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=50.7
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeE-EEEeee-----cCceeEEecChhhhhhhhhcC---Cc--eEEEEeCCHHH
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICS-VSMEVE-----KGRGFVTFDSPESSDKAITDD---CA--RGFVTFDSPES 212 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~-v~i~~d-----k~~gfV~f~~~~~adkai~~s---kG--faFV~F~~~e~ 212 (298)
..|-+.| +.+|++||.+||+---.|.. |.++.+ .+-+||+|.+.+.|++|++++ -| |--|.-.+.++
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHH
Confidence 3566668 99999999999998755555 444444 477999999999999999653 23 33344444455
Q ss_pred HHHHH
Q psy15187 213 SDKAI 217 (298)
Q Consensus 213 A~~Ai 217 (298)
...+.
T Consensus 184 ~~~~~ 188 (510)
T KOG4211|consen 184 VKRAA 188 (510)
T ss_pred HHhhc
Confidence 55544
No 130
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.53 E-value=1.6 Score=33.84 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=33.2
Q ss_pred cEEEEcC-CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 146 NTIFVQG-AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 146 ~tLfVgn-~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
.-.||.= ...-..||.++|+.||.|. |..+ +-.. |||...+.+.|..++..++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi-~dTS---------------------AfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWI-NDTS---------------------AFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEE-CTTE---------------------EEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEE-cCCc---------------------EEEEeecHHHHHHHHHHhc
Confidence 3466665 7788999999999999984 4333 2233 5555555556666666554
No 131
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.25 E-value=1.6 Score=37.23 Aligned_cols=69 Identities=26% Similarity=0.309 Sum_probs=46.2
Q ss_pred CcEEEEcC---CCCCHHH---HHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 145 GNTIFVQG---AGISEEF---LRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 145 ~~tLfVgn---~~~te~~---L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
-.||.|.= .--..+| +-..++.||+|.+|.+. .+. -|.|.|.+..+|-.|+.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-Grq---------------------savVvF~d~~SAC~Av~ 143 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQ---------------------SAVVVFKDITSACKAVS 143 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCc---------------------eEEEEehhhHHHHHHHH
Confidence 35777763 1122334 44557889999998543 122 26777777779999999
Q ss_pred HhCCcEECCeEEEEEEcc
Q psy15187 219 EVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~ 236 (298)
+++. ..-|..+.++|-.
T Consensus 144 Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 144 AFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred hhcC-CCCCceEEeeccc
Confidence 8876 5568888888854
No 132
>KOG4574|consensus
Probab=87.64 E-value=0.39 Score=50.89 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEEC--CeEE
Q psy15187 153 AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQ--GVKL 230 (298)
Q Consensus 153 ~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~--Gr~L 230 (298)
-..+-.-|..+|++||.|.+++..++-+. |.|+|...+.|..|+.+++|.++. |-+.
T Consensus 308 v~~tSssL~~l~s~yg~v~s~wtlr~~N~---------------------alvs~~s~~sai~a~dAl~gkevs~~g~Ps 366 (1007)
T KOG4574|consen 308 VNLTSSSLATLCSDYGSVASAWTLRDLNM---------------------ALVSFSSVESAILALDALQGKEVSVTGAPS 366 (1007)
T ss_pred ccchHHHHHHHHHhhcchhhheecccccc---------------------hhhhhHHHHHHHHhhhhhcCCcccccCCce
Confidence 56777889999999999999988776554 456666666999999999999876 8899
Q ss_pred EEEEcccccccccc
Q psy15187 231 KVSLARRQLKVAPI 244 (298)
Q Consensus 231 ~V~~A~~k~~~~~~ 244 (298)
+|.+|+.-+..++.
T Consensus 367 ~V~~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 367 RVSFAKTLPMYEPP 380 (1007)
T ss_pred eEEeccccccccCC
Confidence 99999987766644
No 133
>KOG0122|consensus
Probab=86.14 E-value=0.68 Score=42.65 Aligned_cols=47 Identities=30% Similarity=0.447 Sum_probs=36.5
Q ss_pred HHHHHHHhccCCeeEEEEe---eecCceeEEecChhhhhhhhhcCCceEE
Q psy15187 158 EFLRQHFSIFGKICSVSME---VEKGRGFVTFDSPESSDKAITDDCARGF 204 (298)
Q Consensus 158 ~~L~~~F~~fG~I~~v~i~---~dk~~gfV~f~~~~~adkai~~skGfaF 204 (298)
++|..-|..+-.|.-+.=- ..+|++||+|.+.++|.+||..-.|||+
T Consensus 207 ~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy 256 (270)
T KOG0122|consen 207 EELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY 256 (270)
T ss_pred HHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc
Confidence 6666667766666554332 2389999999999999999998888886
No 134
>smart00361 RRM_1 RNA recognition motif.
Probab=85.81 E-value=0.8 Score=33.37 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=29.7
Q ss_pred HHHhccCCee--EEEE----eeecCceeEEecChhhhhhhhhcC
Q psy15187 162 QHFSIFGKIC--SVSM----EVEKGRGFVTFDSPESSDKAITDD 199 (298)
Q Consensus 162 ~~F~~fG~I~--~v~i----~~dk~~gfV~f~~~~~adkai~~s 199 (298)
..|+.++.|. .+.- ...+|+|||+|.+.++|.+|+..-
T Consensus 14 ~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l 57 (70)
T smart00361 14 EYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDL 57 (70)
T ss_pred HhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 3889999884 5533 234899999999999999999653
No 135
>KOG4676|consensus
Probab=84.58 E-value=1.1 Score=43.97 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=50.6
Q ss_pred EEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec--CceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK--GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk--~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
-|-|.| +.+|.++++.+|+-.|.|..+.|+..- ...-| ..-.|||-|.+...+..|- .|-+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv--------------~sRtcyVkf~d~~sv~vaQ-hLtn 73 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPV--------------ISRTCYVKFLDSQSVTVAQ-HLTN 73 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcc--------------eeeeEEEeccCCcceeHHh-hhcc
Confidence 688999 999999999999999999999887531 11100 1223677777776666654 4556
Q ss_pred cEECCeEEEEEEc
Q psy15187 223 THVQGVKLKVSLA 235 (298)
Q Consensus 223 ~~i~Gr~L~V~~A 235 (298)
++|-++-|.|-..
T Consensus 74 tvfvdraliv~p~ 86 (479)
T KOG4676|consen 74 TVFVDRALIVRPY 86 (479)
T ss_pred ceeeeeeEEEEec
Confidence 6666666655443
No 136
>KOG4210|consensus
Probab=84.43 E-value=0.49 Score=44.66 Aligned_cols=81 Identities=19% Similarity=0.046 Sum_probs=64.5
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
..+++|||+ +.+.+.+...+|..+|.+..+.+....+.+- ++||+.|.|...+.+..|+....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~---------------sk~~~s~~f~~ks~~~~~l~~s~ 151 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLS---------------SKGGLSVHFAGKSQFFAALEESG 151 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccc---------------cccceeeccccHHHHHHHHHhhh
Confidence 457899999 8888888899999999998887766555554 78999999999999999988665
Q ss_pred CcEECCeEEEEEEccccc
Q psy15187 222 GTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~ 239 (298)
.+.+.++.+...+.....
T Consensus 152 ~~~~~~~~~~~dl~~~~~ 169 (285)
T KOG4210|consen 152 SKVLDGNKGEKDLNTRRG 169 (285)
T ss_pred ccccccccccCccccccc
Confidence 567777777766655443
No 137
>KOG1548|consensus
Probab=82.04 E-value=1.5 Score=42.37 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=40.1
Q ss_pred hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEccccc
Q psy15187 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 197 ~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|..+|=|.++|...+++.-|+.-|++..|.|+.|+|+.|+-+.
T Consensus 180 G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~ 222 (382)
T KOG1548|consen 180 GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQM 222 (382)
T ss_pred CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhh
Confidence 7789999999999999999999999999999999999987543
No 138
>KOG2253|consensus
Probab=81.47 E-value=0.93 Score=46.91 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=53.9
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
-+||||| +.+..+-++.+...||.|.++..+. | ||+.|.++..+..|+..++-.
T Consensus 41 ~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----f-------------------gf~~f~~~~~~~ra~r~~t~~ 96 (668)
T KOG2253|consen 41 DTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----F-------------------GFCEFLKHIGDLRASRLLTEL 96 (668)
T ss_pred ceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----h-------------------cccchhhHHHHHHHHHHhccc
Confidence 5799999 7888888899999999999986543 3 777777777999999999888
Q ss_pred EECCeEEEEEEc
Q psy15187 224 HVQGVKLKVSLA 235 (298)
Q Consensus 224 ~i~Gr~L~V~~A 235 (298)
.++|..|.+...
T Consensus 97 ~~~~~kl~~~~d 108 (668)
T KOG2253|consen 97 NIDDQKLIENVD 108 (668)
T ss_pred CCCcchhhccch
Confidence 888887766543
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=80.52 E-value=16 Score=29.55 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHhccC-CeeEEEEeeecC-ceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEEC
Q psy15187 153 AGISEEFLRQHFSIFG-KICSVSMEVEKG-RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQ 226 (298)
Q Consensus 153 ~~~te~~L~~~F~~fG-~I~~v~i~~dk~-~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~ 226 (298)
+.++-++|..+.+.+- .|..++|++|.. .-| -+.+.|.+.+.|..-...+||..++
T Consensus 23 ~~~~~d~l~~f~~~~~~~i~~~riird~~pnry------------------mVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 23 YMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRY------------------MVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ccccHHHHHHhhhcccccEEEEEEeeCCCCceE------------------EEEEEECCHHHHHHHHHHhCCCccC
Confidence 6677777876666664 556778887732 222 2788999999999999999999988
No 140
>KOG4660|consensus
Probab=76.36 E-value=3.2 Score=42.20 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=35.9
Q ss_pred CCceEEEEeCCHHHHHHHHHHhCCcEEC----CeEEEEEEcccccc
Q psy15187 199 DCARGFVTFDSPESSDKAITEVNGTHVQ----GVKLKVSLARRQLK 240 (298)
Q Consensus 199 skGfaFV~F~~~e~A~~Ai~~lnG~~i~----Gr~L~V~~A~~k~~ 240 (298)
+.|||||-|.+++.+..+.+++||+.+. .....+.||+-|.+
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 7899999999999999999999999776 45668888886544
No 141
>KOG4307|consensus
Probab=75.98 E-value=1.8 Score=45.29 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=44.1
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeE-EEEee---e--cCceeEEecChhhhhhhh----hcCCceEEEEeCCH
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICS-VSMEV---E--KGRGFVTFDSPESSDKAI----TDDCARGFVTFDSP 210 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~-v~i~~---d--k~~gfV~f~~~~~adkai----~~skGfaFV~F~~~ 210 (298)
.+..|||.+ ..+++.++-++|..--.|++ |.|-. + ++-|||.|...+.++.|. ..--|+-||...+.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 446899999 78888899999998878877 54432 2 455666666655555555 23445555555543
No 142
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=73.76 E-value=2.2 Score=29.85 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=26.6
Q ss_pred HHHhccCCeeEEEE--eeecCceeEEecChhhhhhhhhcCCc
Q psy15187 162 QHFSIFGKICSVSM--EVEKGRGFVTFDSPESSDKAITDDCA 201 (298)
Q Consensus 162 ~~F~~fG~I~~v~i--~~dk~~gfV~f~~~~~adkai~~skG 201 (298)
.-|+....+.-..= -..+++|||+|.+.++|++|+..-.|
T Consensus 20 ~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 20 SQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp HTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC
Confidence 33555444444432 23478999999999999999964333
No 143
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=72.45 E-value=5 Score=35.12 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=47.8
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhc-cCCeeEEEEee---e-cCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSI-FGKICSVSMEV---E-KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~-fG~I~~v~i~~---d-k~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~ 215 (298)
..+++|.|.+ +.+||+++.+.++. +|.-....... + ..+.- ..-.-|+|.|.+.+++..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~--------------~~~SRaYi~F~~~~~~~~ 70 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKP--------------PTYSRAYINFKNPEDLLE 70 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTT--------------S--EEEEEEESSCHHHHH
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCC--------------CcceEEEEEeCCHHHHHH
Confidence 3457999999 99999999997776 66552211111 1 11110 011238899999999998
Q ss_pred HHHHhCCcEEC---C--eEEEEEEccc
Q psy15187 216 AITEVNGTHVQ---G--VKLKVSLARR 237 (298)
Q Consensus 216 Ai~~lnG~~i~---G--r~L~V~~A~~ 237 (298)
-+..++|+.|. | ..-.|.+|.-
T Consensus 71 F~~~~~g~~F~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 71 FRDRFDGHVFVDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp HHHHCTTEEEE-TTS-EEEEEEEE-SS
T ss_pred HHHhcCCcEEECCCCCCcceeEEEcch
Confidence 89999998776 3 3556666654
No 144
>KOG0125|consensus
Probab=72.09 E-value=2.1 Score=41.09 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=26.2
Q ss_pred HHHHHHhccCCeeEE-EEeeecCceeEEecChhhhhhhh
Q psy15187 159 FLRQHFSIFGKICSV-SMEVEKGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 159 ~L~~~F~~fG~I~~v-~i~~dk~~gfV~f~~~~~adkai 196 (298)
.+.+-|++.=.|+=| +=--.||+|||||++.+|||+|-
T Consensus 115 aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRAR 153 (376)
T KOG0125|consen 115 AMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRAR 153 (376)
T ss_pred HHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHH
Confidence 334445554444443 22446999999999999999997
No 145
>KOG2318|consensus
Probab=68.50 E-value=23 Score=36.54 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=61.1
Q ss_pred CCCcEEEEcC---CCCCHHHHHHHHhcc----CCeeEEEEeee----------cCcee-EE-ec----------Chhhhh
Q psy15187 143 KGGNTIFVQG---AGISEEFLRQHFSIF----GKICSVSMEVE----------KGRGF-VT-FD----------SPESSD 193 (298)
Q Consensus 143 ~~~~tLfVgn---~~~te~~L~~~F~~f----G~I~~v~i~~d----------k~~gf-V~-f~----------~~~~ad 193 (298)
...++|-|.| ..+...+|.-+|..| |.|.+|.|-.. .-+|= +. |. +.+.-+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3446899999 557888999888876 59999988643 01111 00 00 111100
Q ss_pred hh---------hhc-CCceEEEEeCCHHHHHHHHHHhCCcEEC--CeEEEEEEc
Q psy15187 194 KA---------ITD-DCARGFVTFDSPESSDKAITEVNGTHVQ--GVKLKVSLA 235 (298)
Q Consensus 194 ka---------i~~-skGfaFV~F~~~e~A~~Ai~~lnG~~i~--Gr~L~V~~A 235 (298)
.. +++ -.=||.|+|.+.+.|......++|..+. |..|-+.|-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01 122 3348999999999999999999999999 556666553
No 146
>smart00360 RRM RNA recognition motif.
Probab=68.06 E-value=4.8 Score=27.17 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=20.0
Q ss_pred ecCceeEEecChhhhhhhhhcCCc
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA 201 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG 201 (298)
.+++|||+|.+.++|..|+..-.|
T Consensus 37 ~~~~a~v~f~~~~~a~~a~~~~~~ 60 (71)
T smart00360 37 SKGFAFVEFESEEDAEKALEALNG 60 (71)
T ss_pred CCceEEEEeCCHHHHHHHHHHcCC
Confidence 478999999999999999965433
No 147
>KOG0149|consensus
Probab=67.00 E-value=3.6 Score=37.74 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=26.3
Q ss_pred HHHHHhccCCeeEE-EE--eeecCceeEEecChhhhhhhhhc
Q psy15187 160 LRQHFSIFGKICSV-SM--EVEKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 160 L~~~F~~fG~I~~v-~i--~~dk~~gfV~f~~~~~adkai~~ 198 (298)
..+-|+..=+.+-| .- -+.+|+|||||.+.++|.+|+..
T Consensus 32 yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 32 YFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred HHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC
Confidence 34455554433332 22 34589999999999999999943
No 148
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=66.44 E-value=14 Score=26.97 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.1
Q ss_pred HHHHHHHhccCCeeEEEEe
Q psy15187 158 EFLRQHFSIFGKICSVSME 176 (298)
Q Consensus 158 ~~L~~~F~~fG~I~~v~i~ 176 (298)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999877654
No 149
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=65.21 E-value=5.1 Score=33.74 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=19.0
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|+.||..
T Consensus 75 ~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 75 SRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 479999999999999999954
No 150
>KOG0114|consensus
Probab=65.04 E-value=12 Score=30.49 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=32.3
Q ss_pred cCceeEEecChhhhhhhhhcCCc------eEEEEeCCHHHHHHHH
Q psy15187 179 KGRGFVTFDSPESSDKAITDDCA------RGFVTFDSPESSDKAI 217 (298)
Q Consensus 179 k~~gfV~f~~~~~adkai~~skG------faFV~F~~~e~A~~Ai 217 (298)
+|++||.|++..+|.+|+.+-.| |-.|.|.++++|.+-+
T Consensus 57 rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~~~~~ 101 (124)
T KOG0114|consen 57 RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDAFKLM 101 (124)
T ss_pred CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHHHHHH
Confidence 79999999999999999976554 5578899888876643
No 151
>smart00362 RRM_2 RNA recognition motif.
Probab=63.24 E-value=6.9 Score=26.52 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=20.8
Q ss_pred eecCceeEEecChhhhhhhhhcCCc
Q psy15187 177 VEKGRGFVTFDSPESSDKAITDDCA 201 (298)
Q Consensus 177 ~dk~~gfV~f~~~~~adkai~~skG 201 (298)
..+++|||+|.+.++|+.|+....|
T Consensus 37 ~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 37 KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 3478999999999999999965544
No 152
>KOG2591|consensus
Probab=58.56 E-value=21 Score=36.76 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=32.2
Q ss_pred CCCCCCCCcEEEEcC---CCCCHHHHHHHHhc--cCCeeEEEEeeecCceeEEecChh
Q psy15187 138 PNEKPKGGNTIFVQG---AGISEEFLRQHFSI--FGKICSVSMEVEKGRGFVTFDSPE 190 (298)
Q Consensus 138 ~~~~~~~~~tLfVgn---~~~te~~L~~~F~~--fG~I~~v~i~~dk~~gfV~f~~~~ 190 (298)
+..++.....|.|-. ..+-.++++.+|.. |-++++|..-.+ ...||||.+..
T Consensus 167 ekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~ 223 (684)
T KOG2591|consen 167 EKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDT 223 (684)
T ss_pred cccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecch
Confidence 334444444555554 77888889999976 778888866543 23444444444
No 153
>KOG0128|consensus
Probab=54.81 E-value=6 Score=42.30 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=47.4
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-----cCceeEEecChhhhhhhhhcC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPESSDKAITDD 199 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-----k~~gfV~f~~~~~adkai~~s 199 (298)
..|||.| +..|.++|+.+|..+|.+.++.++.. +|.+||.|.+..++.+++.+.
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccc
Confidence 4789999 99999999999999999999887754 688999999999988888653
No 154
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=54.44 E-value=8.4 Score=27.22 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|.+|+..
T Consensus 38 ~~~~a~v~f~~~~~a~~al~~ 58 (70)
T PF14259_consen 38 SRGFAFVEFSSEEDAKRALEL 58 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred cCCEEEEEeCCHHHHHHHHHH
Confidence 478999999999999999954
No 155
>KOG0804|consensus
Probab=51.76 E-value=50 Score=33.23 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=52.9
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhcc-CCeeEEEEeeec-CceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIF-GKICSVSMEVEK-GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~f-G~I~~v~i~~dk-~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
++.|+|-. ..++-.||-.|...| -.|..+.|++|. +.-| -..|.|.+..+|..-..++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnry------------------mvLIkFr~q~da~~Fy~ef 135 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRY------------------MVLIKFRDQADADTFYEEF 135 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceE------------------EEEEEeccchhHHHHHHHc
Confidence 67888888 778999999988875 477889999862 2233 2788999999999999999
Q ss_pred CCcEECC
Q psy15187 221 NGTHVQG 227 (298)
Q Consensus 221 nG~~i~G 227 (298)
||..|+.
T Consensus 136 NGk~Fn~ 142 (493)
T KOG0804|consen 136 NGKQFNS 142 (493)
T ss_pred CCCcCCC
Confidence 9999883
No 156
>KOG2891|consensus
Probab=50.96 E-value=5.6 Score=37.55 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.9
Q ss_pred CCHHHHHHHHhccCCeeEEEEe
Q psy15187 155 ISEEFLRQHFSIFGKICSVSME 176 (298)
Q Consensus 155 ~te~~L~~~F~~fG~I~~v~i~ 176 (298)
-+++-|+..|..||.|..|.|+
T Consensus 173 pse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred ChHHHHHHHHHHhccceecCCc
Confidence 6788899999999999999886
No 157
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=50.85 E-value=13 Score=25.18 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=21.5
Q ss_pred eecCceeEEecChhhhhhhhhcCCce
Q psy15187 177 VEKGRGFVTFDSPESSDKAITDDCAR 202 (298)
Q Consensus 177 ~dk~~gfV~f~~~~~adkai~~skGf 202 (298)
..++++||+|.+.++|..|+....|.
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999999999999999765543
No 158
>PLN03121 nucleic acid binding protein; Provisional
Probab=47.69 E-value=17 Score=33.62 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=31.1
Q ss_pred HHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhc
Q psy15187 158 EFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 158 ~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~ 198 (298)
.++..+|+..-.|.-+.=-...++|||+|.+.++|+.|+..
T Consensus 23 refFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllL 63 (243)
T PLN03121 23 YDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLL 63 (243)
T ss_pred HHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhc
Confidence 45666677666665555456678999999999999999943
No 159
>KOG1365|consensus
Probab=44.50 E-value=71 Score=31.66 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHhcc----CCeeEEEEeee--cCceeEEecChhhhhhhh
Q psy15187 153 AGISEEFLRQHFSIF----GKICSVSMEVE--KGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 153 ~~~te~~L~~~F~~f----G~I~~v~i~~d--k~~gfV~f~~~~~adkai 196 (298)
|..++.++..+|.-- |-+.-|..... .+++.|.|.+.+.-|-|+
T Consensus 70 wq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal 119 (508)
T KOG1365|consen 70 WQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL 119 (508)
T ss_pred CCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh
Confidence 777888888888743 33333332222 478888888888888887
No 160
>KOG2193|consensus
Probab=37.73 E-value=17 Score=36.26 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=37.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHhCCc-EECCeEEEEEEccccccc
Q psy15187 199 DCARGFVTFDSPESSDKAITEVNGT-HVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 199 skGfaFV~F~~~e~A~~Ai~~lnG~-~i~Gr~L~V~~A~~k~~~ 241 (298)
-.||+||.+.+..-|.+|++.++|. .+.|.++.|....++..+
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 4689999999999999999999987 566999999988765543
No 161
>KOG4208|consensus
Probab=33.95 E-value=19 Score=32.54 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=24.5
Q ss_pred ecCceeEEecChhhhhhhhhcCCceEE------EEeCCHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCARGF------VTFDSPE 211 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skGfaF------V~F~~~e 211 (298)
.+++|||+|.+.+.|..|-...-+|-| |+|.-++
T Consensus 91 SKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 91 SKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred cCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 389999999999999888755444333 4555555
No 162
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=33.14 E-value=49 Score=28.37 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=32.2
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK 179 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk 179 (298)
.....+..+++++ ..++..++..+|..+|.+....+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 3445567899998 899999999999999999777665543
No 163
>KOG4019|consensus
Probab=33.00 E-value=37 Score=30.16 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=29.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCcEECCe-EEEEEEccc
Q psy15187 203 GFVTFDSPESSDKAITEVNGTHVQGV-KLKVSLARR 237 (298)
Q Consensus 203 aFV~F~~~e~A~~Ai~~lnG~~i~Gr-~L~V~~A~~ 237 (298)
.-|-|.+++.|..|...++++.|.|. .++.-++.+
T Consensus 54 vRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 54 VRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred eEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 56677777799999999999999987 778777765
No 164
>KOG0111|consensus
Probab=27.09 E-value=34 Score=31.41 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.0
Q ss_pred eecCceeEEecChhhhhhhhh
Q psy15187 177 VEKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 177 ~dk~~gfV~f~~~~~adkai~ 197 (298)
+.+++|||+|...++|-.||.
T Consensus 50 kHRgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 50 KHRGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred cccceeEEEeeccchhHHHhh
Confidence 468999999999999999993
No 165
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=25.28 E-value=51 Score=24.18 Aligned_cols=11 Identities=9% Similarity=0.419 Sum_probs=5.7
Q ss_pred CeEEEEEEccc
Q psy15187 227 GVKLKVSLARR 237 (298)
Q Consensus 227 Gr~L~V~~A~~ 237 (298)
|..+...+...
T Consensus 47 G~~V~f~~~~~ 57 (69)
T PRK09507 47 GQRVEFEITNG 57 (69)
T ss_pred CCEEEEEEEEC
Confidence 55555555443
No 166
>KOG4207|consensus
Probab=25.24 E-value=41 Score=30.66 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=25.4
Q ss_pred HHHHHHhccCCeeEE--EEee-ecCceeEEecChhhhhhhh
Q psy15187 159 FLRQHFSIFGKICSV--SMEV-EKGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 159 ~L~~~F~~fG~I~~v--~i~~-dk~~gfV~f~~~~~adkai 196 (298)
-+.+-++..|.|.-- .... .++|+||.|.+..+|+.|+
T Consensus 32 rvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~ 72 (256)
T KOG4207|consen 32 RVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDAL 72 (256)
T ss_pred HHHHHhCcccceecccccccccccceeEEEeeecchHHHHH
Confidence 345556666655432 1222 3899999999999888777
No 167
>PRK15464 cold shock-like protein CspH; Provisional
Probab=25.15 E-value=46 Score=24.66 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=8.2
Q ss_pred EECCeEEEEEEccc
Q psy15187 224 HVQGVKLKVSLARR 237 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~ 237 (298)
...|..+...+...
T Consensus 45 l~~G~~V~f~v~~~ 58 (70)
T PRK15464 45 LIPGLRVEFCRVNG 58 (70)
T ss_pred CCCCCEEEEEEEEC
Confidence 33476776666554
No 168
>PRK10943 cold shock-like protein CspC; Provisional
Probab=24.74 E-value=51 Score=24.19 Aligned_cols=12 Identities=8% Similarity=0.340 Sum_probs=6.7
Q ss_pred CCeEEEEEEccc
Q psy15187 226 QGVKLKVSLARR 237 (298)
Q Consensus 226 ~Gr~L~V~~A~~ 237 (298)
.|..+...+...
T Consensus 46 ~G~~V~f~~~~~ 57 (69)
T PRK10943 46 EGQNVEFEIQDG 57 (69)
T ss_pred CCCEEEEEEEEC
Confidence 466666655543
No 169
>PRK15463 cold shock-like protein CspF; Provisional
Probab=24.62 E-value=51 Score=24.33 Aligned_cols=12 Identities=8% Similarity=0.296 Sum_probs=6.9
Q ss_pred CCeEEEEEEccc
Q psy15187 226 QGVKLKVSLARR 237 (298)
Q Consensus 226 ~Gr~L~V~~A~~ 237 (298)
.|..+...+...
T Consensus 47 ~G~~V~f~v~~~ 58 (70)
T PRK15463 47 TGLRVEFCRING 58 (70)
T ss_pred CCCEEEEEEEEC
Confidence 366666665543
No 170
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=24.30 E-value=54 Score=24.92 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=13.5
Q ss_pred CcEEEEcC---CCCCHHHHHHH
Q psy15187 145 GNTIFVQG---AGISEEFLRQH 163 (298)
Q Consensus 145 ~~tLfVgn---~~~te~~L~~~ 163 (298)
++.|||+| .++|.++..++
T Consensus 27 ~nklyvng~~~R~Lt~~E~~eL 48 (76)
T PF06394_consen 27 NNKLYVNGKYARDLTPDEQQEL 48 (76)
T ss_dssp TTEEEETTCEEEE--HHHHHHH
T ss_pred CCEEEECCEeeccCCHHHHHHH
Confidence 46899999 78888886654
No 171
>PRK09890 cold shock protein CspG; Provisional
Probab=23.90 E-value=51 Score=24.23 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=5.7
Q ss_pred CCeEEEEEEcc
Q psy15187 226 QGVKLKVSLAR 236 (298)
Q Consensus 226 ~Gr~L~V~~A~ 236 (298)
.|..+...+..
T Consensus 47 ~G~~V~f~~~~ 57 (70)
T PRK09890 47 ENQKVEFSIEQ 57 (70)
T ss_pred CCCEEEEEEEE
Confidence 35555555544
No 172
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=23.79 E-value=56 Score=24.46 Aligned_cols=13 Identities=8% Similarity=0.225 Sum_probs=7.4
Q ss_pred ECCeEEEEEEccc
Q psy15187 225 VQGVKLKVSLARR 237 (298)
Q Consensus 225 i~Gr~L~V~~A~~ 237 (298)
..|..+...+...
T Consensus 43 ~~G~~V~f~~~~~ 55 (74)
T PRK09937 43 KAGQSVQFDVHQG 55 (74)
T ss_pred CCCCEEEEEEEEC
Confidence 3466666666554
No 173
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=23.78 E-value=55 Score=21.32 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHhccCC
Q psy15187 153 AGISEEFLRQHFSIFGK 169 (298)
Q Consensus 153 ~~~te~~L~~~F~~fG~ 169 (298)
.+++++.|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 67899999999988654
No 174
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.54 E-value=1e+02 Score=28.87 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=24.5
Q ss_pred EEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcccc
Q psy15187 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 203 aFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k 238 (298)
|||+|.+..+|..|++.+.... ++.+.|..|...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 6899999999999988655443 345577766653
No 175
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=22.29 E-value=64 Score=23.51 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=7.6
Q ss_pred ECCeEEEEEEccc
Q psy15187 225 VQGVKLKVSLARR 237 (298)
Q Consensus 225 i~Gr~L~V~~A~~ 237 (298)
-.|..+...+...
T Consensus 43 ~~G~~V~f~~~~~ 55 (68)
T TIGR02381 43 KAGQKVQFEVVQG 55 (68)
T ss_pred CCCCEEEEEEEEC
Confidence 3366666666554
No 176
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=22.28 E-value=94 Score=25.29 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHH
Q psy15187 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213 (298)
Q Consensus 155 ~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A 213 (298)
++.++|.+.|..|.++. +....+.. | +.|++.|.|.+.-..
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-g----------------h~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-G----------------HTGFAIVEFNKDWSG 69 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-E----------------EEEEEEEE--SSHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-C----------------CcEEEEEEECCChHH
Confidence 56688999999999885 44444432 4 366799999876544
No 177
>KOG4410|consensus
Probab=21.96 E-value=3.5e+02 Score=25.90 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=29.8
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCe-eEEEEeeecCceeEEecC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKI-CSVSMEVEKGRGFVTFDS 188 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I-~~v~i~~dk~~gfV~f~~ 188 (298)
+-||++| .++.-.||+..+.+-|.+ .++...-..+.+|..|-+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~ 376 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGN 376 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCC
Confidence 5699999 999999999999888765 333333334555555544
No 178
>KOG4676|consensus
Probab=21.73 E-value=14 Score=36.56 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=26.8
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEe
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSME 176 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~ 176 (298)
.+|+|++ ..+-..++-+.|..||.|....+-
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a 184 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA 184 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh
Confidence 5799999 788889999999999999887654
No 179
>KOG0121|consensus
Probab=21.22 E-value=59 Score=27.51 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.5
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
..|++||+|...++|+.|+..
T Consensus 77 pCGFCFVeyy~~~dA~~Alry 97 (153)
T KOG0121|consen 77 PCGFCFVEYYSRDDAEDALRY 97 (153)
T ss_pred ccceEEEEEecchhHHHHHHH
Confidence 479999999999999999943
No 180
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=20.99 E-value=87 Score=22.13 Aligned_cols=10 Identities=40% Similarity=0.584 Sum_probs=5.2
Q ss_pred CceEEEEeCC
Q psy15187 200 CARGFVTFDS 209 (298)
Q Consensus 200 kGfaFV~F~~ 209 (298)
+|||||.-.+
T Consensus 12 kgyGFI~~~~ 21 (66)
T PF00313_consen 12 KGYGFITSDD 21 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCceEEEEcc
Confidence 4555555543
No 181
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=20.81 E-value=95 Score=26.70 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=16.1
Q ss_pred CCcEEEEcC---CCCCHHHHHHH
Q psy15187 144 GGNTIFVQG---AGISEEFLRQH 163 (298)
Q Consensus 144 ~~~tLfVgn---~~~te~~L~~~ 163 (298)
.+++||||| .++|.++..++
T Consensus 109 qnNklYvg~~~~RdLT~~E~~EL 131 (159)
T cd00225 109 QNNKVYVGNTYARDLTPKEIAEL 131 (159)
T ss_pred ECCEEEECCEEeccCCHHHHHHH
Confidence 457999999 88888887665
No 182
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=20.80 E-value=67 Score=23.53 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=5.4
Q ss_pred CeEEEEEEcc
Q psy15187 227 GVKLKVSLAR 236 (298)
Q Consensus 227 Gr~L~V~~A~ 236 (298)
|..+...+..
T Consensus 48 G~~V~f~~~~ 57 (70)
T PRK10354 48 GQKVSFTIES 57 (70)
T ss_pred CCEEEEEEEE
Confidence 5555555544
No 183
>PRK14998 cold shock-like protein CspD; Provisional
Probab=20.52 E-value=68 Score=23.87 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=7.7
Q ss_pred ECCeEEEEEEccc
Q psy15187 225 VQGVKLKVSLARR 237 (298)
Q Consensus 225 i~Gr~L~V~~A~~ 237 (298)
..|..+...+...
T Consensus 43 ~~G~~V~f~~~~~ 55 (73)
T PRK14998 43 KAGQSVRFDVHQG 55 (73)
T ss_pred CCCCEEEEEEEEC
Confidence 3466666666554
No 184
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=20.23 E-value=1.2e+02 Score=22.04 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=30.7
Q ss_pred hhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q psy15187 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLK 231 (298)
Q Consensus 190 ~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~ 231 (298)
+++..+| ...||+.|-|-..++....|++.-|..+-+.++.
T Consensus 2 eE~k~~i-~~gg~v~~pwcg~~ece~~ike~t~at~rciP~~ 42 (68)
T PF09180_consen 2 EEFKEAI-EKGGFVLVPWCGDEECEEKIKEETGATIRCIPFD 42 (68)
T ss_dssp HHHHHHH-HTSSEEEEEES-SHHHHHHHHHHHS-EEEEEETT
T ss_pred hHHHHHH-hCCCEEEEEccCCHHHHHHHHHhcCCcEeEeEcc
Confidence 4566677 6678999999999999999999987776665544
No 185
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.16 E-value=4.4e+02 Score=26.59 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=29.7
Q ss_pred CceEEEEeCCHHHHHHHHHHhCCcEEC--CeEEEEEEc
Q psy15187 200 CARGFVTFDSPESSDKAITEVNGTHVQ--GVKLKVSLA 235 (298)
Q Consensus 200 kGfaFV~F~~~e~A~~Ai~~lnG~~i~--Gr~L~V~~A 235 (298)
.=||.|++.+.+.+......++|..+. +..+-+.|.
T Consensus 258 yYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 258 YYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred eEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 348999999999999999999999888 556666664
Done!