Query psy15187
Match_columns 298
No_of_seqs 317 out of 2283
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:48:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 99.8 4.2E-21 1.4E-25 169.1 10.2 101 142-242 12-185 (213)
2 4fxv_A ELAV-like protein 1; RN 99.8 2.4E-20 8.4E-25 146.4 11.0 82 141-237 15-98 (99)
3 2cjk_A Nuclear polyadenylated 99.8 3.1E-19 1E-23 149.1 10.2 94 144-238 2-166 (167)
4 3s8s_A Histone-lysine N-methyl 99.8 6.9E-19 2.4E-23 140.8 11.3 85 142-241 3-89 (110)
5 3md3_A Nuclear and cytoplasmic 99.8 1.1E-18 3.9E-23 144.8 11.5 92 146-237 1-166 (166)
6 1whw_A Hypothetical protein ri 99.8 2.1E-18 7.2E-23 133.7 12.1 85 143-242 6-92 (99)
7 2lxi_A RNA-binding protein 10; 99.8 3.5E-19 1.2E-23 137.4 7.4 81 146-241 2-86 (91)
8 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.5E-18 5E-23 131.2 10.5 81 144-239 5-87 (87)
9 1l3k_A Heterogeneous nuclear r 99.8 1.2E-18 4.1E-23 149.1 11.2 101 141-242 9-187 (196)
10 4f25_A Polyadenylate-binding p 99.8 2.7E-18 9.4E-23 137.6 12.2 82 142-240 2-85 (115)
11 3md1_A Nuclear and cytoplasmic 99.8 2.4E-18 8.1E-23 128.9 10.8 79 146-239 2-82 (83)
12 2dgo_A Cytotoxic granule-assoc 99.8 6E-18 2E-22 134.8 13.2 88 140-242 10-99 (115)
13 2cq0_A Eukaryotic translation 99.8 2.8E-18 9.4E-23 134.1 10.9 88 139-241 9-98 (103)
14 2dnz_A Probable RNA-binding pr 99.8 4.7E-18 1.6E-22 130.6 11.4 83 143-240 3-87 (95)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.1E-18 2.1E-22 127.2 11.4 79 143-236 5-85 (85)
16 1x5t_A Splicing factor 3B subu 99.8 3.4E-18 1.2E-22 131.6 10.2 84 143-241 3-89 (96)
17 2x1f_A MRNA 3'-END-processing 99.8 5.5E-18 1.9E-22 130.9 11.1 82 145-241 2-85 (96)
18 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.6E-18 1.9E-22 132.0 11.1 86 142-242 9-96 (102)
19 2cpf_A RNA binding motif prote 99.8 7.3E-18 2.5E-22 130.4 11.6 83 143-240 3-90 (98)
20 1x5u_A Splicing factor 3B subu 99.7 6.3E-18 2.2E-22 132.3 11.1 86 140-240 10-97 (105)
21 2qfj_A FBP-interacting repress 99.7 5.1E-18 1.7E-22 147.4 11.6 96 145-240 28-207 (216)
22 1x4h_A RNA-binding protein 28; 99.7 1E-17 3.4E-22 132.3 12.2 87 141-242 11-105 (111)
23 1fxl_A Paraneoplastic encephal 99.7 4.1E-18 1.4E-22 141.5 10.5 91 145-235 2-167 (167)
24 1b7f_A Protein (SXL-lethal pro 99.7 4.5E-18 1.5E-22 141.9 10.5 92 144-235 2-168 (168)
25 1p27_B RNA-binding protein 8A; 99.7 4.1E-18 1.4E-22 133.6 9.6 83 143-240 21-105 (106)
26 2dgs_A DAZ-associated protein 99.7 9.3E-18 3.2E-22 130.2 11.4 83 143-241 8-92 (99)
27 3nmr_A Cugbp ELAV-like family 99.7 4.9E-18 1.7E-22 142.3 10.6 93 144-236 2-175 (175)
28 2cpz_A CUG triplet repeat RNA- 99.7 7.7E-18 2.6E-22 134.3 11.2 84 143-241 23-108 (115)
29 2dnm_A SRP46 splicing factor; 99.7 5.9E-18 2E-22 132.2 10.2 85 141-240 9-95 (103)
30 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-17 3.8E-22 128.2 11.5 81 141-236 12-94 (94)
31 2do4_A Squamous cell carcinoma 99.7 1.2E-17 4.1E-22 129.8 11.8 83 142-240 14-98 (100)
32 4a8x_A RNA-binding protein wit 99.7 1.3E-17 4.4E-22 126.0 11.6 82 144-239 3-86 (88)
33 2g4b_A Splicing factor U2AF 65 99.7 5.7E-18 1.9E-22 142.0 10.5 93 144-236 3-172 (172)
34 2cqc_A Arginine/serine-rich sp 99.7 9E-18 3.1E-22 128.8 10.7 84 139-237 9-94 (95)
35 1oo0_B CG8781-PA, drosophila Y 99.7 9.1E-18 3.1E-22 132.7 11.1 83 143-240 24-108 (110)
36 2la6_A RNA-binding protein FUS 99.7 6.3E-18 2.2E-22 131.3 9.8 84 138-236 6-99 (99)
37 2cph_A RNA binding motif prote 99.7 1.1E-17 3.7E-22 131.3 11.1 88 140-242 10-101 (107)
38 1u6f_A Tcubp1, RNA-binding pro 99.7 2.3E-17 7.7E-22 135.6 13.1 86 141-241 38-125 (139)
39 2dgp_A Bruno-like 4, RNA bindi 99.7 1E-17 3.6E-22 131.3 10.6 87 139-240 7-98 (106)
40 3ns6_A Eukaryotic translation 99.7 1.9E-18 6.4E-23 135.3 6.1 81 145-240 6-95 (100)
41 2lkz_A RNA-binding protein 5; 99.7 3.5E-18 1.2E-22 133.5 7.5 78 145-237 9-94 (95)
42 2jrs_A RNA-binding protein 39; 99.7 9.9E-18 3.4E-22 133.2 10.2 87 138-239 19-107 (108)
43 1x5s_A Cold-inducible RNA-bind 99.7 1.1E-17 3.9E-22 130.2 10.0 84 142-240 9-94 (102)
44 2cpe_A RNA-binding protein EWS 99.7 1.5E-17 5.3E-22 131.9 11.0 86 141-241 11-106 (113)
45 2d9p_A Polyadenylate-binding p 99.7 1.2E-17 4E-22 130.5 9.9 87 139-242 9-97 (103)
46 2dnh_A Bruno-like 5, RNA bindi 99.7 2E-17 6.9E-22 129.4 11.1 84 143-242 13-101 (105)
47 2fy1_A RNA-binding motif prote 99.7 1.7E-17 5.7E-22 133.5 10.4 82 143-240 5-88 (116)
48 2cq3_A RNA-binding protein 9; 99.7 6.4E-17 2.2E-21 126.3 13.4 87 139-242 9-97 (103)
49 3p5t_L Cleavage and polyadenyl 99.7 1.9E-18 6.5E-23 132.3 4.5 80 146-240 2-85 (90)
50 3ex7_B RNA-binding protein 8A; 99.7 1.4E-17 4.6E-22 134.7 9.8 85 142-241 19-105 (126)
51 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.7E-17 2.6E-21 125.8 13.7 83 141-240 11-95 (103)
52 2div_A TRNA selenocysteine ass 99.7 1.3E-17 4.5E-22 129.2 9.2 82 142-238 6-94 (99)
53 2khc_A Testis-specific RNP-typ 99.7 1.2E-17 4.2E-22 133.5 9.2 79 143-236 38-118 (118)
54 1wi8_A EIF-4B, eukaryotic tran 99.7 3.2E-17 1.1E-21 128.4 11.4 82 143-241 13-97 (104)
55 2cqd_A RNA-binding region cont 99.7 5.7E-17 2E-21 129.4 12.7 84 141-240 13-98 (116)
56 2dng_A Eukaryotic translation 99.7 4.2E-17 1.4E-21 127.5 11.7 82 142-240 12-95 (103)
57 1fje_B Nucleolin RBD12, protei 99.7 3.9E-17 1.3E-21 137.7 12.1 100 140-239 8-175 (175)
58 2do0_A HnRNP M, heterogeneous 99.7 6.4E-17 2.2E-21 128.4 12.5 83 142-240 12-96 (114)
59 2dhg_A TRNA selenocysteine ass 99.7 1.5E-17 5E-22 130.0 8.5 85 142-242 6-94 (104)
60 2ywk_A Putative RNA-binding pr 99.7 2.7E-17 9.4E-22 126.3 9.9 80 142-237 13-94 (95)
61 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.4E-17 1.5E-21 136.7 11.9 85 142-241 36-122 (156)
62 3n9u_C Cleavage and polyadenyl 99.7 2E-17 6.8E-22 140.3 9.5 81 144-239 54-138 (156)
63 3s7r_A Heterogeneous nuclear r 99.7 4.7E-17 1.6E-21 123.2 10.6 79 141-235 7-87 (87)
64 2m2b_A RNA-binding protein 10; 99.7 9.8E-18 3.4E-22 137.2 7.2 83 142-240 20-110 (131)
65 3ucg_A Polyadenylate-binding p 99.7 4.9E-17 1.7E-21 123.2 10.6 77 146-238 7-85 (89)
66 2rs2_A Musashi-1, RNA-binding 99.7 3.8E-17 1.3E-21 129.8 10.4 87 138-240 18-106 (109)
67 3ulh_A THO complex subunit 4; 99.7 5.2E-17 1.8E-21 127.5 10.9 80 141-236 25-106 (107)
68 2cpi_A CCR4-NOT transcription 99.7 3.4E-17 1.1E-21 130.3 9.7 87 142-240 12-103 (111)
69 2dh8_A DAZ-associated protein 99.7 3.3E-17 1.1E-21 128.4 9.5 84 141-240 12-97 (105)
70 2dgx_A KIAA0430 protein; RRM d 99.7 7.9E-17 2.7E-21 124.8 11.5 80 143-240 7-92 (96)
71 2dis_A Unnamed protein product 99.7 3.8E-17 1.3E-21 128.7 9.7 84 143-241 6-95 (109)
72 2cqp_A RNA-binding protein 12; 99.7 2.8E-17 9.5E-22 127.1 8.6 82 142-238 12-95 (98)
73 2kxn_B Transformer-2 protein h 99.7 2.4E-17 8.1E-22 135.3 8.7 84 141-239 42-127 (129)
74 2nlw_A Eukaryotic translation 99.7 4.5E-17 1.5E-21 128.3 9.9 82 141-239 11-101 (105)
75 1p1t_A Cleavage stimulation fa 99.7 1.2E-17 4.3E-22 130.3 6.6 82 146-242 9-92 (104)
76 2yh0_A Splicing factor U2AF 65 99.7 5.4E-17 1.8E-21 139.0 11.1 97 144-240 3-196 (198)
77 1x5p_A Negative elongation fac 99.7 1.5E-16 5E-21 123.2 12.4 84 138-242 8-91 (97)
78 2kn4_A Immunoglobulin G-bindin 99.7 5.7E-17 1.9E-21 135.8 10.8 83 143-240 68-152 (158)
79 2kt5_A RNA and export factor-b 99.7 9.1E-17 3.1E-21 129.8 11.5 84 141-240 31-116 (124)
80 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.1E-17 3.7E-22 130.7 5.8 84 139-239 13-99 (100)
81 2cq4_A RNA binding motif prote 99.7 2.9E-17 9.9E-22 130.7 8.4 79 146-240 26-106 (114)
82 1x4a_A Splicing factor, argini 99.7 1.7E-16 6E-21 125.2 12.8 80 143-240 20-101 (109)
83 2cqg_A TDP-43, TAR DNA-binding 99.7 1.5E-16 5E-21 124.2 12.1 84 141-241 11-96 (103)
84 2err_A Ataxin-2-binding protei 99.7 8E-17 2.7E-21 127.9 10.7 82 141-239 25-108 (109)
85 2wbr_A GW182, gawky, LD47780P; 99.7 8.7E-17 3E-21 124.3 10.4 72 144-236 6-79 (89)
86 2ghp_A U4/U6 snRNA-associated 99.7 1.2E-16 4.1E-21 145.9 13.2 101 140-240 36-199 (292)
87 1s79_A Lupus LA protein; RRM, 99.7 2.4E-17 8.1E-22 130.4 7.2 77 144-237 10-88 (103)
88 1sjq_A Polypyrimidine tract-bi 99.7 5.3E-17 1.8E-21 129.5 9.2 80 141-241 12-95 (105)
89 1x4e_A RNA binding motif, sing 99.7 8.2E-18 2.8E-22 126.8 4.2 79 143-236 3-83 (85)
90 2jwn_A Embryonic polyadenylate 99.7 9.8E-17 3.3E-21 129.3 10.7 80 145-240 36-117 (124)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.8E-17 3.3E-21 136.2 11.2 83 143-240 70-154 (165)
92 2dgv_A HnRNP M, heterogeneous 99.7 6.4E-17 2.2E-21 123.5 9.0 81 143-240 6-88 (92)
93 2ek1_A RNA-binding protein 12; 99.7 2.9E-17 1E-21 126.1 7.1 81 142-237 12-94 (95)
94 1x4b_A Heterogeneous nuclear r 99.7 1E-16 3.5E-21 127.9 10.4 81 145-241 27-109 (116)
95 2dgw_A Probable RNA-binding pr 99.7 1.7E-16 5.8E-21 121.2 11.0 81 142-240 7-89 (91)
96 3sde_A Paraspeckle component 1 99.7 9.3E-17 3.2E-21 145.5 11.0 100 141-240 18-181 (261)
97 3smz_A Protein raver-1, ribonu 99.7 1.9E-16 6.4E-21 144.0 11.9 96 144-240 21-177 (284)
98 1x4d_A Matrin 3; structural ge 99.7 1.1E-16 3.6E-21 127.0 8.9 79 141-240 11-94 (102)
99 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.2E-16 7.4E-21 129.2 11.0 78 143-235 61-140 (140)
100 2xnq_A Nuclear polyadenylated 99.7 3.7E-16 1.3E-20 121.6 11.7 77 139-238 16-95 (97)
101 1x4c_A Splicing factor, argini 99.7 4.5E-16 1.5E-20 123.0 12.4 77 142-240 12-95 (108)
102 2ki2_A SS-DNA binding protein 99.7 2E-17 6.7E-22 126.0 4.2 79 146-240 2-82 (90)
103 2mss_A Protein (musashi1); RNA 99.7 3.9E-17 1.3E-21 120.2 5.3 73 147-235 1-75 (75)
104 3smz_A Protein raver-1, ribonu 99.7 3.4E-16 1.1E-20 142.3 12.6 98 144-241 94-267 (284)
105 1fj7_A Nucleolin RBD1, protein 99.7 3.1E-17 1.1E-21 127.6 5.0 83 141-240 13-97 (101)
106 2lea_A Serine/arginine-rich sp 99.7 5.8E-17 2E-21 133.9 6.7 84 142-240 44-129 (135)
107 2adc_A Polypyrimidine tract-bi 99.7 2.2E-16 7.5E-21 140.3 10.9 97 142-238 31-228 (229)
108 1wex_A Hypothetical protein (r 99.7 2.2E-16 7.5E-21 125.3 9.6 81 141-242 11-95 (104)
109 2cpy_A RNA-binding protein 12; 99.7 1.3E-16 4.6E-21 127.4 8.4 84 140-240 10-96 (114)
110 1nu4_A U1A RNA binding domain; 99.7 2.2E-16 7.6E-21 121.6 9.1 80 143-240 6-91 (97)
111 2jvr_A Nucleolar protein 3; RN 99.7 2.9E-16 9.8E-21 126.2 9.9 81 141-240 24-107 (111)
112 2cpx_A Hypothetical protein FL 99.7 8E-17 2.7E-21 128.0 6.6 86 142-242 22-109 (115)
113 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.5E-17 1.9E-21 119.7 5.2 74 146-235 1-76 (77)
114 1x5o_A RNA binding motif, sing 99.7 2.4E-16 8.3E-21 125.2 9.3 80 143-238 23-112 (114)
115 2a3j_A U1 small nuclear ribonu 99.7 2.3E-16 7.9E-21 129.6 9.4 81 142-240 26-112 (127)
116 2cq1_A PTB-like protein L; RRM 99.7 7E-16 2.4E-20 121.8 11.8 79 142-241 12-94 (101)
117 2lcw_A RNA-binding protein FUS 99.5 6.5E-18 2.2E-22 135.1 0.0 85 143-242 5-99 (116)
118 3lqv_A PRE-mRNA branch site pr 99.7 3E-16 1E-20 124.8 9.6 81 142-240 5-87 (115)
119 2dgt_A RNA-binding protein 30; 99.7 1.1E-15 3.8E-20 117.0 12.4 76 142-240 7-84 (92)
120 2fc9_A NCL protein; structure 99.7 7E-16 2.4E-20 119.9 11.3 81 141-240 11-93 (101)
121 2cpd_A Apobec-1 stimulating pr 99.7 1.7E-15 5.7E-20 117.5 13.2 77 141-240 11-91 (99)
122 2fc8_A NCL protein; structure 99.7 5.5E-16 1.9E-20 120.6 10.3 84 139-240 9-94 (102)
123 1x4g_A Nucleolysin TIAR; struc 99.6 8E-16 2.7E-20 121.5 11.2 80 142-242 22-103 (109)
124 2e5j_A Methenyltetrahydrofolat 99.6 4.3E-16 1.5E-20 120.6 9.4 79 142-240 16-96 (97)
125 3r27_A HnRNP L, heterogeneous 99.6 4.9E-16 1.7E-20 122.9 9.9 77 142-239 18-98 (100)
126 2db1_A Heterogeneous nuclear r 99.6 2.8E-16 9.4E-21 126.7 8.6 81 142-239 14-99 (118)
127 1why_A Hypothetical protein ri 99.6 7.3E-16 2.5E-20 119.1 10.5 79 141-240 13-95 (97)
128 1qm9_A Polypyrimidine tract-bi 99.6 2.6E-16 8.9E-21 135.6 8.9 94 145-238 3-197 (198)
129 2cpj_A Non-POU domain-containi 99.6 4.9E-16 1.7E-20 120.6 9.5 80 140-240 10-91 (99)
130 2ytc_A PRE-mRNA-splicing facto 99.6 6.9E-16 2.4E-20 116.0 10.0 73 143-236 10-85 (85)
131 2ad9_A Polypyrimidine tract-bi 99.6 5.7E-16 1.9E-20 126.2 10.0 80 142-242 28-111 (119)
132 2cqh_A IGF-II mRNA-binding pro 99.6 5.8E-16 2E-20 118.6 9.5 76 143-240 6-85 (93)
133 2dnp_A RNA-binding protein 14; 99.6 1.3E-15 4.4E-20 116.2 11.3 76 142-240 6-83 (90)
134 1wf1_A RNA-binding protein RAL 99.6 1.1E-15 3.8E-20 120.9 11.2 75 143-240 25-102 (110)
135 3q2s_C Cleavage and polyadenyl 99.6 1.5E-16 5.1E-21 142.8 6.8 81 144-239 67-151 (229)
136 2e44_A Insulin-like growth fac 99.6 8.8E-16 3E-20 118.2 10.3 77 143-238 13-92 (96)
137 2krb_A Eukaryotic translation 99.6 1.2E-16 4E-21 119.8 5.2 71 145-232 1-80 (81)
138 1wg5_A Heterogeneous nuclear r 99.6 6.1E-16 2.1E-20 121.6 9.4 81 142-239 12-95 (104)
139 2la4_A Nuclear and cytoplasmic 99.6 5.6E-16 1.9E-20 120.5 9.0 76 142-238 24-101 (101)
140 2dnn_A RNA-binding protein 12; 99.6 3.2E-16 1.1E-20 125.4 7.7 77 144-238 15-93 (109)
141 2hvz_A Splicing factor, argini 99.6 4.1E-16 1.4E-20 121.3 8.2 75 146-240 1-77 (101)
142 1wel_A RNA-binding protein 12; 99.6 8.9E-17 3E-21 130.2 4.3 82 143-240 23-106 (124)
143 2dnq_A RNA-binding protein 4B; 99.6 1.4E-15 4.8E-20 115.9 10.7 77 142-241 5-83 (90)
144 2i2y_A Fusion protein consists 99.6 5.5E-16 1.9E-20 129.2 8.9 77 143-239 71-149 (150)
145 2dgu_A Heterogeneous nuclear r 99.6 3.2E-15 1.1E-19 116.9 12.5 77 143-242 9-87 (103)
146 2hgl_A HNRPF protein, heteroge 99.6 2.9E-16 9.8E-21 130.5 6.8 81 142-239 41-126 (136)
147 1wez_A HnRNP H', FTP-3, hetero 99.6 2.8E-16 9.7E-21 123.7 6.3 81 141-239 11-93 (102)
148 2xs2_A Deleted in azoospermia- 99.6 2.7E-16 9.3E-21 122.5 6.1 80 144-241 8-89 (102)
149 1fjc_A Nucleolin RBD2, protein 99.6 6.8E-16 2.3E-20 118.8 8.1 79 142-240 13-93 (96)
150 2cq2_A Hypothetical protein LO 99.6 1.3E-15 4.6E-20 123.1 10.1 78 143-241 23-109 (114)
151 2ghp_A U4/U6 snRNA-associated 99.6 1.9E-15 6.3E-20 137.9 11.9 95 144-239 116-292 (292)
152 2lmi_A GRSF-1, G-rich sequence 99.6 1.8E-16 6.3E-21 125.2 4.4 81 142-239 8-93 (107)
153 1iqt_A AUF1, heterogeneous nuc 99.6 2.3E-16 7.9E-21 115.9 4.6 73 147-235 1-75 (75)
154 2bz2_A Negative elongation fac 99.6 1.2E-15 4.2E-20 123.8 9.2 82 140-242 34-115 (121)
155 2jvo_A Nucleolar protein 3; nu 99.6 2E-15 6.9E-20 119.8 10.2 77 141-240 27-105 (108)
156 3egn_A RNA-binding protein 40; 99.6 5.3E-16 1.8E-20 128.3 7.0 84 142-240 42-132 (143)
157 3pgw_A U1-A; protein-RNA compl 99.6 3.5E-15 1.2E-19 135.4 12.8 54 143-196 7-69 (282)
158 1whx_A Hypothetical protein ri 99.6 7.2E-16 2.5E-20 122.9 7.2 73 145-238 10-84 (111)
159 2f3j_A RNA and export factor b 99.6 1.3E-15 4.3E-20 131.6 8.9 84 141-240 84-169 (177)
160 3pgw_S U1-70K; protein-RNA com 99.6 4.1E-15 1.4E-19 145.3 13.4 83 143-240 100-184 (437)
161 1x4f_A Matrin 3; structural ge 99.6 9.6E-16 3.3E-20 123.5 7.3 79 142-241 22-105 (112)
162 2kvi_A Nuclear polyadenylated 99.6 1.4E-15 4.6E-20 117.7 7.8 76 142-240 7-85 (96)
163 3d2w_A TAR DNA-binding protein 99.6 3.3E-15 1.1E-19 114.7 9.8 76 141-240 7-86 (89)
164 2pe8_A Splicing factor 45; RRM 99.6 4.9E-15 1.7E-19 117.6 10.9 81 143-237 6-93 (105)
165 3zzy_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 121.5 11.6 75 146-240 29-108 (130)
166 3tyt_A Heterogeneous nuclear r 99.6 8.3E-15 2.9E-19 129.0 10.8 76 144-239 3-81 (205)
167 1sjr_A Polypyrimidine tract-bi 99.6 9.1E-15 3.1E-19 125.3 10.2 78 144-240 45-126 (164)
168 2e5g_A U6 snRNA-specific termi 99.6 1.2E-14 4.2E-19 111.7 9.9 77 143-240 6-84 (94)
169 2hgn_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 127.7 3.8 81 142-240 43-125 (139)
170 2j8a_A Histone-lysine N-methyl 99.6 5.5E-15 1.9E-19 121.9 7.8 77 146-237 3-95 (136)
171 1wg1_A KIAA1579 protein, homol 99.6 1.2E-14 4E-19 110.6 9.1 75 143-239 3-79 (88)
172 2e5i_A Heterogeneous nuclear r 99.6 2.2E-14 7.7E-19 117.5 11.0 75 146-240 26-104 (124)
173 3beg_B Splicing factor, argini 99.5 8.4E-15 2.9E-19 117.3 7.3 74 143-238 14-94 (115)
174 1wf0_A TDP-43, TAR DNA-binding 99.5 1.2E-14 4E-19 110.4 7.6 76 143-240 3-80 (88)
175 2dnl_A Cytoplasmic polyadenyla 99.5 2.3E-14 7.8E-19 114.4 9.1 77 143-237 6-87 (114)
176 2hgm_A HNRPF protein, heteroge 99.5 6.1E-15 2.1E-19 121.1 5.8 80 141-238 38-121 (126)
177 2dha_A FLJ20171 protein; RRM d 99.5 6.2E-15 2.1E-19 120.4 5.7 80 143-239 21-106 (123)
178 2diu_A KIAA0430 protein; struc 99.5 4.2E-14 1.5E-18 110.5 8.8 74 144-242 8-88 (96)
179 2hzc_A Splicing factor U2AF 65 99.5 4.9E-14 1.7E-18 106.1 8.3 69 144-234 5-86 (87)
180 2dit_A HIV TAT specific factor 99.5 3.6E-13 1.2E-17 107.1 12.2 83 140-241 10-105 (112)
181 2voo_A Lupus LA protein; RNA-b 99.5 1.7E-13 5.7E-18 119.7 9.8 75 146-237 110-186 (193)
182 3u1l_A PRE-mRNA-splicing facto 99.5 6.3E-14 2.1E-18 126.9 7.2 77 143-240 132-231 (240)
183 3v4m_A Splicing factor U2AF 65 99.4 3.8E-13 1.3E-17 106.6 9.8 81 144-237 4-96 (105)
184 3ue2_A Poly(U)-binding-splicin 99.4 3.6E-13 1.2E-17 109.2 9.6 79 144-237 19-108 (118)
185 1jmt_A Splicing factor U2AF 35 99.4 5.9E-13 2E-17 105.3 7.8 67 153-235 25-103 (104)
186 3tyt_A Heterogeneous nuclear r 99.4 8.4E-13 2.9E-17 116.1 8.2 76 143-235 121-204 (205)
187 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.3E-12 4.4E-17 103.0 7.7 66 153-240 27-92 (100)
188 3s6e_A RNA-binding protein 39; 99.3 8.1E-12 2.8E-16 100.6 9.4 77 143-238 5-93 (114)
189 3tht_A Alkylated DNA repair pr 99.2 2.9E-11 1E-15 114.7 9.8 74 142-236 15-97 (345)
190 2dnr_A Synaptojanin-1; RRM dom 99.0 9E-10 3.1E-14 85.2 8.1 57 158-238 30-86 (91)
191 1owx_A Lupus LA protein, SS-B, 99.0 1.1E-09 3.8E-14 89.1 7.2 76 142-238 15-96 (121)
192 3dxb_A Thioredoxin N-terminall 98.9 2.5E-09 8.5E-14 94.1 6.9 74 153-237 139-212 (222)
193 1ufw_A Synaptojanin 2; RNP dom 98.8 9E-09 3.1E-13 80.1 7.2 55 158-236 39-93 (95)
194 3nmr_A Cugbp ELAV-like family 98.8 7.5E-09 2.6E-13 86.0 6.5 54 144-197 94-154 (175)
195 4f02_A Polyadenylate-binding p 98.8 9.5E-09 3.2E-13 89.8 7.1 72 145-216 103-186 (213)
196 3pgw_A U1-A; protein-RNA compl 98.8 1.4E-08 4.7E-13 91.7 8.0 76 142-237 204-282 (282)
197 1l3k_A Heterogeneous nuclear r 98.8 1.5E-08 5.1E-13 86.0 7.6 55 144-198 103-165 (196)
198 3md3_A Nuclear and cytoplasmic 98.8 1.9E-08 6.5E-13 82.6 7.9 57 142-198 84-148 (166)
199 2g4b_A Splicing factor U2AF 65 98.7 1.6E-08 5.3E-13 84.1 7.0 56 143-198 92-155 (172)
200 2qfj_A FBP-interacting repress 98.7 1.7E-08 5.9E-13 86.9 6.9 54 144-197 124-185 (216)
201 2yh0_A Splicing factor U2AF 65 98.7 2.1E-08 7.3E-13 85.1 7.3 57 142-198 111-175 (198)
202 1b7f_A Protein (SXL-lethal pro 98.7 3.3E-08 1.1E-12 81.6 7.8 56 142-197 86-149 (168)
203 2cjk_A Nuclear polyadenylated 98.7 1.5E-08 5.1E-13 83.8 5.1 53 145-197 87-147 (167)
204 1fxl_A Paraneoplastic encephal 98.7 3.3E-08 1.1E-12 81.3 7.0 55 143-197 86-148 (167)
205 3sde_A Paraspeckle component 1 98.6 5E-08 1.7E-12 87.9 7.2 55 144-198 95-156 (261)
206 1qm9_A Polypyrimidine tract-bi 98.6 5.6E-08 1.9E-12 83.1 6.4 55 143-197 118-176 (198)
207 2adc_A Polypyrimidine tract-bi 98.6 8.1E-08 2.8E-12 84.7 7.1 55 143-197 149-207 (229)
208 1fje_B Nucleolin RBD12, protei 98.4 3.2E-07 1.1E-11 76.5 5.1 55 143-198 97-155 (175)
209 2l9w_A U4/U6 snRNA-associated- 97.7 0.00019 6.6E-09 57.1 9.5 70 145-235 21-97 (117)
210 1wey_A Calcipressin 1; structu 97.3 0.0024 8.2E-08 50.2 10.4 71 146-237 6-83 (104)
211 1wwh_A Nucleoporin 35, nucleop 96.2 0.013 4.5E-07 47.1 7.4 71 144-236 23-95 (119)
212 2i2y_A Fusion protein consists 95.8 0.0034 1.2E-07 51.2 2.2 40 199-239 12-52 (150)
213 3p3d_A Nucleoporin 53; structu 95.3 0.018 6.2E-07 47.0 4.8 85 146-237 8-98 (132)
214 3pq1_A Poly(A) RNA polymerase; 94.8 0.016 5.5E-07 56.7 3.7 50 146-195 54-105 (464)
215 2dhx_A Poly (ADP-ribose) polym 94.4 0.17 5.8E-06 39.6 7.9 71 143-237 6-83 (104)
216 2kn4_A Immunoglobulin G-bindin 93.9 0.023 7.8E-07 46.3 2.2 26 199-224 12-37 (158)
217 1uw4_A UPF3X; nonsense mediate 93.3 0.51 1.7E-05 35.9 8.6 68 146-226 2-71 (91)
218 1whv_A Poly(A)-specific ribonu 93.0 0.29 9.8E-06 38.0 6.8 51 146-220 17-69 (100)
219 3ctr_A Poly(A)-specific ribonu 90.2 0.29 1E-05 38.0 4.1 50 148-221 9-60 (101)
220 2db1_A Heterogeneous nuclear r 85.8 0.86 3E-05 35.3 4.5 44 178-221 60-108 (118)
221 2lxi_A RNA-binding protein 10; 85.7 0.58 2E-05 34.5 3.3 21 178-198 43-63 (91)
222 2cpx_A Hypothetical protein FL 85.2 0.79 2.7E-05 34.8 3.9 40 159-198 44-86 (115)
223 2cpy_A RNA-binding protein 12; 84.0 1.5 5.2E-05 33.4 5.1 40 178-218 56-101 (114)
224 1wel_A RNA-binding protein 12; 83.8 0.96 3.3E-05 35.1 3.9 42 179-220 67-113 (124)
225 2d9o_A DNAJ (HSP40) homolog, s 83.5 0.62 2.1E-05 35.6 2.6 21 180-200 55-75 (100)
226 2lkz_A RNA-binding protein 5; 83.4 0.45 1.5E-05 35.9 1.8 20 178-197 52-71 (95)
227 2krb_A Eukaryotic translation 83.4 0.51 1.7E-05 33.7 2.0 23 178-200 46-68 (81)
228 1s79_A Lupus LA protein; RRM, 81.6 0.66 2.2E-05 35.3 2.1 20 178-197 51-70 (103)
229 2hgl_A HNRPF protein, heteroge 81.4 1.3 4.6E-05 35.6 4.0 42 178-219 87-133 (136)
230 1x5t_A Splicing factor 3B subu 81.3 0.96 3.3E-05 33.1 2.8 22 178-199 47-68 (96)
231 2l08_A Regulator of nonsense t 80.8 4.1 0.00014 31.2 6.3 79 145-236 9-94 (97)
232 4f25_A Polyadenylate-binding p 80.5 0.59 2E-05 36.0 1.5 21 178-198 44-64 (115)
233 3ns6_A Eukaryotic translation 80.2 0.8 2.7E-05 34.3 2.1 20 178-197 53-72 (100)
234 2a3j_A U1 small nuclear ribonu 80.2 0.68 2.3E-05 36.9 1.8 34 177-210 70-109 (127)
235 1fj7_A Nucleolin RBD1, protein 80.2 1.1 3.7E-05 33.2 2.9 28 170-197 49-76 (101)
236 2dha_A FLJ20171 protein; RRM d 80.2 1.1 3.7E-05 35.5 3.0 42 178-219 67-113 (123)
237 2fc9_A NCL protein; structure 80.1 1.1 3.6E-05 33.3 2.7 22 178-199 52-73 (101)
238 3egn_A RNA-binding protein 40; 79.8 0.92 3.2E-05 36.0 2.5 29 170-198 80-111 (143)
239 3p5t_L Cleavage and polyadenyl 79.8 0.52 1.8E-05 34.4 0.9 20 178-197 44-63 (90)
240 2dgx_A KIAA0430 protein; RRM d 79.7 0.92 3.2E-05 33.5 2.3 20 179-198 52-71 (96)
241 2lmi_A GRSF-1, G-rich sequence 79.7 1.7 5.8E-05 32.8 3.9 43 178-220 54-101 (107)
242 1iqt_A AUF1, heterogeneous nuc 79.7 0.78 2.7E-05 31.9 1.8 21 178-198 40-60 (75)
243 4fxv_A ELAV-like protein 1; RN 79.5 0.65 2.2E-05 34.9 1.4 21 178-198 60-80 (99)
244 2dnl_A Cytoplasmic polyadenyla 79.4 1.2 4E-05 34.1 2.8 42 178-237 51-100 (114)
245 2nlw_A Eukaryotic translation 79.3 0.81 2.8E-05 34.5 1.9 21 178-198 60-80 (105)
246 2dnn_A RNA-binding protein 12; 79.2 0.83 2.8E-05 35.3 1.9 36 178-213 55-95 (109)
247 2cpi_A CCR4-NOT transcription 78.9 0.84 2.9E-05 34.8 1.9 21 178-198 62-82 (111)
248 1wg5_A Heterogeneous nuclear r 78.5 0.96 3.3E-05 34.0 2.1 21 178-198 56-76 (104)
249 1fjc_A Nucleolin RBD2, protein 78.5 1 3.4E-05 33.0 2.2 22 178-199 52-73 (96)
250 1x4e_A RNA binding motif, sing 78.1 1.1 3.6E-05 32.1 2.1 20 178-197 46-65 (85)
251 1x4b_A Heterogeneous nuclear r 78.1 1.4 4.8E-05 33.5 2.9 21 178-198 68-88 (116)
252 2mss_A Protein (musashi1); RNA 78.1 0.98 3.3E-05 31.4 1.9 20 178-197 40-59 (75)
253 2dh8_A DAZ-associated protein 78.1 0.96 3.3E-05 33.8 1.9 21 178-198 57-77 (105)
254 2e5h_A Zinc finger CCHC-type a 77.8 1.5 5.1E-05 31.8 2.9 22 178-199 57-78 (94)
255 2x1f_A MRNA 3'-END-processing 77.7 1 3.5E-05 33.1 2.0 21 178-198 43-63 (96)
256 2wbr_A GW182, gawky, LD47780P; 77.6 1 3.5E-05 34.1 2.0 37 179-215 43-85 (89)
257 2hgm_A HNRPF protein, heteroge 77.5 0.98 3.3E-05 36.0 1.9 21 178-198 83-103 (126)
258 3s8s_A Histone-lysine N-methyl 77.4 0.82 2.8E-05 35.2 1.4 36 178-213 47-88 (110)
259 2j76_E EIF-4B, EIF4B, eukaryot 77.1 1.2 4E-05 33.2 2.2 19 178-196 60-78 (100)
260 2cqp_A RNA-binding protein 12; 77.0 1.1 3.8E-05 32.9 2.0 21 178-198 56-76 (98)
261 4a8x_A RNA-binding protein wit 76.9 1.2 3.9E-05 31.9 2.0 21 178-198 46-66 (88)
262 2rs2_A Musashi-1, RNA-binding 76.8 1.2 3.9E-05 34.0 2.1 21 178-198 66-86 (109)
263 2dgs_A DAZ-associated protein 76.7 1.2 4E-05 32.9 2.1 20 178-197 51-70 (99)
264 1uaw_A Mouse-musashi-1; RNP-ty 76.7 0.95 3.2E-05 31.6 1.5 21 178-198 41-61 (77)
265 1x5u_A Splicing factor 3B subu 76.5 1.2 4.2E-05 33.1 2.1 21 178-198 56-76 (105)
266 2dgw_A Probable RNA-binding pr 76.4 1.4 4.6E-05 32.0 2.3 20 178-197 49-68 (91)
267 2cq4_A RNA binding motif prote 76.4 1.4 4.6E-05 33.5 2.4 19 178-196 66-84 (114)
268 3mdf_A Peptidyl-prolyl CIS-tra 76.4 1.2 4.1E-05 31.6 2.0 21 178-198 48-68 (85)
269 2cpe_A RNA-binding protein EWS 76.3 1.1 3.9E-05 33.8 1.9 21 178-198 64-84 (113)
270 2cqi_A Nucleolysin TIAR; RNA r 76.2 1.3 4.5E-05 32.9 2.3 21 178-198 54-74 (103)
271 1jmt_A Splicing factor U2AF 35 76.2 0.95 3.2E-05 34.5 1.5 21 178-198 67-87 (104)
272 2dis_A Unnamed protein product 76.2 1.2 4.2E-05 33.4 2.1 21 178-198 51-71 (109)
273 2cph_A RNA binding motif prote 76.2 1.2 4.2E-05 33.1 2.1 21 178-198 57-77 (107)
274 1whw_A Hypothetical protein ri 76.1 1.2 4.2E-05 32.7 2.1 21 178-198 49-69 (99)
275 2cpf_A RNA binding motif prote 76.0 1.2 4.2E-05 32.6 2.0 22 177-198 48-69 (98)
276 2dgo_A Cytotoxic granule-assoc 75.9 1.2 4.1E-05 33.8 2.0 21 178-198 56-76 (115)
277 1nu4_A U1A RNA binding domain; 75.9 1.3 4.3E-05 32.4 2.0 22 177-198 49-70 (97)
278 2cqb_A Peptidyl-prolyl CIS-tra 75.8 1.1 3.9E-05 33.1 1.8 21 178-198 53-73 (102)
279 1wez_A HnRNP H', FTP-3, hetero 75.8 0.86 3E-05 34.4 1.1 21 178-198 54-74 (102)
280 3s7r_A Heterogeneous nuclear r 75.8 0.99 3.4E-05 32.4 1.4 21 178-198 52-72 (87)
281 3ucg_A Polyadenylate-binding p 75.7 1.4 4.9E-05 31.5 2.3 19 178-196 47-65 (89)
282 1x4a_A Splicing factor, argini 75.7 1.3 4.4E-05 33.3 2.1 21 178-198 60-80 (109)
283 3bs9_A Nucleolysin TIA-1 isofo 75.6 1 3.5E-05 32.2 1.4 21 178-198 47-67 (87)
284 1wi8_A EIF-4B, eukaryotic tran 75.6 1.6 5.4E-05 32.5 2.6 19 178-196 56-74 (104)
285 2cq0_A Eukaryotic translation 75.5 1.3 4.3E-05 33.0 2.0 21 178-198 56-76 (103)
286 2fc8_A NCL protein; structure 75.4 0.94 3.2E-05 33.6 1.2 21 178-198 53-73 (102)
287 1x4h_A RNA-binding protein 28; 75.4 1.3 4.5E-05 33.2 2.1 21 178-198 56-76 (111)
288 2div_A TRNA selenocysteine ass 75.3 1.4 4.7E-05 32.4 2.1 21 178-198 51-71 (99)
289 3n9u_C Cleavage and polyadenyl 75.2 1.3 4.3E-05 36.4 2.1 35 178-212 98-138 (156)
290 2dnm_A SRP46 splicing factor; 74.9 1.2 4.1E-05 33.1 1.7 20 178-197 54-73 (103)
291 2dnz_A Probable RNA-binding pr 74.9 1.4 4.9E-05 32.0 2.1 20 178-197 46-65 (95)
292 2cq3_A RNA-binding protein 9; 74.9 1.4 4.7E-05 32.7 2.1 21 178-198 54-74 (103)
293 1oo0_B CG8781-PA, drosophila Y 74.9 1.4 4.6E-05 33.2 2.0 21 178-198 67-87 (110)
294 2dgp_A Bruno-like 4, RNA bindi 74.6 1.4 4.9E-05 32.8 2.1 20 178-197 54-73 (106)
295 3md1_A Nuclear and cytoplasmic 74.6 1.1 3.9E-05 31.6 1.5 21 178-198 42-62 (83)
296 2dng_A Eukaryotic translation 74.3 1.5 5.1E-05 32.6 2.1 19 178-196 55-73 (103)
297 2dhg_A TRNA selenocysteine ass 74.3 1.2 4E-05 33.1 1.5 21 178-198 50-70 (104)
298 2err_A Ataxin-2-binding protei 74.2 1.3 4.3E-05 33.7 1.7 21 178-198 68-88 (109)
299 1x5s_A Cold-inducible RNA-bind 74.0 1.4 4.9E-05 32.5 1.9 20 178-197 53-72 (102)
300 2cqg_A TDP-43, TAR DNA-binding 74.0 1.2 4.1E-05 33.1 1.5 21 178-198 56-76 (103)
301 2cqc_A Arginine/serine-rich sp 73.8 1.3 4.5E-05 32.1 1.7 21 178-198 56-76 (95)
302 2fy1_A RNA-binding motif prote 73.7 1.4 4.9E-05 33.9 1.9 21 178-198 47-67 (116)
303 2pe8_A Splicing factor 45; RRM 72.9 1.4 4.7E-05 33.7 1.6 34 178-211 55-94 (105)
304 1x5o_A RNA binding motif, sing 72.9 1.2 4.2E-05 33.7 1.3 20 178-197 65-84 (114)
305 2do4_A Squamous cell carcinoma 72.9 1.3 4.5E-05 32.7 1.5 21 178-198 57-77 (100)
306 2dnh_A Bruno-like 5, RNA bindi 72.8 1.3 4.5E-05 32.9 1.5 19 179-197 56-74 (105)
307 2ku7_A MLL1 PHD3-CYP33 RRM chi 72.8 2.2 7.5E-05 33.2 2.9 24 178-201 104-127 (140)
308 2la6_A RNA-binding protein FUS 72.7 1.3 4.4E-05 32.7 1.4 20 178-197 62-81 (99)
309 2dgv_A HnRNP M, heterogeneous 72.5 1.4 4.7E-05 31.9 1.5 20 178-197 47-66 (92)
310 2cqd_A RNA-binding region cont 72.5 1.7 5.9E-05 33.0 2.1 24 178-201 58-81 (116)
311 2ek1_A RNA-binding protein 12; 72.2 1.4 4.6E-05 32.1 1.4 21 178-198 56-76 (95)
312 1p27_B RNA-binding protein 8A; 72.1 1.4 4.9E-05 32.8 1.5 20 178-197 64-83 (106)
313 2khc_A Testis-specific RNP-typ 72.1 1.8 6.3E-05 32.9 2.2 24 178-201 81-104 (118)
314 1p1t_A Cleavage stimulation fa 71.7 1.1 3.9E-05 33.2 0.9 42 178-219 49-96 (104)
315 2ywk_A Putative RNA-binding pr 71.3 1.4 4.9E-05 32.0 1.3 21 178-198 56-76 (95)
316 1u6f_A Tcubp1, RNA-binding pro 71.3 1.6 5.4E-05 34.3 1.7 40 159-198 61-103 (139)
317 2d9p_A Polyadenylate-binding p 71.2 1.5 5.2E-05 32.5 1.5 20 178-197 54-73 (103)
318 3lqv_A PRE-mRNA branch site pr 70.9 2 6.8E-05 32.5 2.1 34 178-211 46-85 (115)
319 3v4m_A Splicing factor U2AF 65 70.8 1.9 6.5E-05 32.9 2.0 34 178-211 58-97 (105)
320 2kxn_B Transformer-2 protein h 70.7 2 6.7E-05 33.9 2.1 21 178-198 87-107 (129)
321 2xs2_A Deleted in azoospermia- 70.6 1.2 4.1E-05 33.0 0.8 20 178-197 49-68 (102)
322 2g0c_A ATP-dependent RNA helic 70.5 5.3 0.00018 28.3 4.3 71 147-236 2-75 (76)
323 2jwn_A Embryonic polyadenylate 70.5 2.1 7.3E-05 32.8 2.3 19 178-196 77-95 (124)
324 3ex7_B RNA-binding protein 8A; 70.3 2.1 7.1E-05 33.0 2.1 20 178-197 63-82 (126)
325 2xnq_A Nuclear polyadenylated 69.7 2 6.8E-05 31.9 1.9 17 182-198 60-76 (97)
326 2cpz_A CUG triplet repeat RNA- 69.6 1.5 5.3E-05 33.2 1.2 21 178-198 66-86 (115)
327 2do0_A HnRNP M, heterogeneous 69.4 1.7 5.7E-05 32.8 1.4 20 179-198 56-75 (114)
328 2cq1_A PTB-like protein L; RRM 68.9 1.4 4.9E-05 33.4 0.9 16 182-197 54-69 (101)
329 2kt5_A RNA and export factor-b 68.7 2.3 7.8E-05 32.8 2.1 20 178-197 75-94 (124)
330 2cpd_A Apobec-1 stimulating pr 68.2 2.6 8.8E-05 31.0 2.2 17 182-198 54-70 (99)
331 2diu_A KIAA0430 protein; struc 68.2 1.9 6.6E-05 33.1 1.5 18 182-199 49-66 (96)
332 2hgn_A Heterogeneous nuclear r 68.0 1.7 5.7E-05 35.2 1.2 20 178-197 85-104 (139)
333 2cqh_A IGF-II mRNA-binding pro 68.0 1.9 6.6E-05 31.3 1.4 18 181-198 46-63 (93)
334 2jrs_A RNA-binding protein 39; 67.8 2 6.8E-05 32.6 1.5 20 178-197 67-86 (108)
335 3ulh_A THO complex subunit 4; 67.7 1.9 6.6E-05 32.1 1.4 21 178-198 69-89 (107)
336 3d2w_A TAR DNA-binding protein 65.9 3 0.0001 30.4 2.2 18 181-198 50-67 (89)
337 3d45_A Poly(A)-specific ribonu 65.7 15 0.0005 36.0 7.7 54 145-221 440-494 (507)
338 1h2v_Z 20 kDa nuclear CAP bind 65.3 2.7 9.2E-05 33.7 1.9 21 178-198 80-100 (156)
339 1x4f_A Matrin 3; structural ge 63.7 3.5 0.00012 32.1 2.3 16 181-196 64-79 (112)
340 2m2b_A RNA-binding protein 10; 63.6 2.3 8E-05 33.2 1.2 20 178-198 66-85 (131)
341 2lea_A Serine/arginine-rich sp 63.4 3.1 0.00011 32.9 1.9 21 178-198 88-108 (135)
342 2lcw_A RNA-binding protein FUS 67.2 1.5 5.1E-05 33.4 0.0 21 178-198 56-76 (116)
343 3r27_A HnRNP L, heterogeneous 63.1 4.2 0.00014 31.1 2.5 15 182-196 60-74 (100)
344 1wf0_A TDP-43, TAR DNA-binding 62.9 3.4 0.00012 29.6 1.9 18 181-198 44-61 (88)
345 2ki2_A SS-DNA binding protein 62.8 2.7 9.2E-05 30.2 1.3 20 178-198 42-61 (90)
346 3ue2_A Poly(U)-binding-splicin 62.7 2.7 9.2E-05 32.9 1.4 34 178-211 70-109 (118)
347 1sjq_A Polypyrimidine tract-bi 62.5 4.1 0.00014 31.4 2.4 15 182-196 55-69 (105)
348 3q2s_C Cleavage and polyadenyl 61.9 2.5 8.7E-05 36.7 1.2 38 178-215 111-154 (229)
349 1wf1_A RNA-binding protein RAL 61.2 3.2 0.00011 31.2 1.6 18 181-198 64-81 (110)
350 1x5p_A Negative elongation fac 60.4 5 0.00017 29.3 2.5 17 180-196 50-66 (97)
351 2voo_A Lupus LA protein; RNA-b 59.8 3.2 0.00011 35.0 1.5 21 178-198 149-169 (193)
352 1wex_A Hypothetical protein (r 59.0 5.1 0.00018 30.4 2.4 15 182-196 54-68 (104)
353 1rk8_A CG8781-PA, CG8781-PA pr 58.9 3.4 0.00011 33.6 1.4 21 178-198 113-133 (165)
354 1x4d_A Matrin 3; structural ge 56.3 5.9 0.0002 30.1 2.3 14 183-196 56-69 (102)
355 2cq2_A Hypothetical protein LO 55.5 5.7 0.00019 31.1 2.1 15 182-196 66-80 (114)
356 2f3j_A RNA and export factor b 55.0 4.9 0.00017 33.4 1.8 21 178-198 128-148 (177)
357 3pgw_S U1-70K; protein-RNA com 54.4 8.2 0.00028 36.9 3.5 40 159-198 121-163 (437)
358 2ad9_A Polypyrimidine tract-bi 53.2 5.9 0.0002 31.1 1.9 14 183-196 71-84 (119)
359 3zzy_A Polypyrimidine tract-bi 50.8 8.5 0.00029 30.8 2.5 21 181-201 68-88 (130)
360 2e5i_A Heterogeneous nuclear r 39.2 13 0.00044 29.3 1.9 17 181-197 64-80 (124)
361 3dxb_A Thioredoxin N-terminall 36.7 12 0.00042 31.5 1.5 34 178-211 174-213 (222)
362 3ts2_A Protein LIN-28 homolog 33.8 6.2 0.00021 32.3 -0.9 28 158-187 2-29 (148)
363 1h95_A CSD, Y-box binding prot 24.6 30 0.001 25.0 1.6 8 200-207 20-27 (79)
364 3ulj_A LIN28B, DNA-binding pro 24.1 30 0.001 25.9 1.5 12 226-237 58-69 (90)
365 2dhx_A Poly (ADP-ribose) polym 22.1 83 0.0028 24.2 3.7 6 231-236 51-56 (104)
366 1f32_A Major pepsin inhibitor 22.1 42 0.0015 27.3 2.1 20 144-163 82-104 (149)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=4.2e-21 Score=169.06 Aligned_cols=101 Identities=24% Similarity=0.438 Sum_probs=90.4
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh-----------------
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI----------------- 196 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai----------------- 196 (298)
..+.++|||+| +++|+++|+++|++||+|.+|.|++| +++|||+|.+.++|++||
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999 99999999999999999999999986 479999999999999999
Q ss_pred ------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCe
Q psy15187 197 ------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGV 228 (298)
Q Consensus 197 ------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr 228 (298)
+.++|||||+|.+.++|.+||..|||..|+|+
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 12689999999999999999999999999999
Q ss_pred EEEEEEcccccccc
Q psy15187 229 KLKVSLARRQLKVA 242 (298)
Q Consensus 229 ~L~V~~A~~k~~~~ 242 (298)
.|+|.||.++....
T Consensus 172 ~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 172 KVFVGRFKSRKERE 185 (213)
T ss_dssp ECEEEECCCHHHHH
T ss_pred EEEEEEcCCCcccc
Confidence 99999998765533
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=146.35 Aligned_cols=82 Identities=28% Similarity=0.431 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
-..++++|||+| +++|+++|+++|++||.|.+|.|+.|+..|. ++|||||+|.+.++|.+||.
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~---------------~kG~afV~f~~~~~A~~Ai~ 79 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGH---------------SLGYGFVNYVTAKDAERAIN 79 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC---------------EEEEEEEEESSHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCc---------------ccccEEEEECCHHHHHHHHH
Confidence 346779999999 9999999999999999999999999988886 89999999999999999999
Q ss_pred HhCCcEECCeEEEEEEccc
Q psy15187 219 EVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~ 237 (298)
.|||..|+|++|+|.||+|
T Consensus 80 ~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 80 TLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHTTCEETTEECEEEECCB
T ss_pred HhCCCEECCEEEEEEEeeC
Confidence 9999999999999999975
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.79 E-value=3.1e-19 Score=149.13 Aligned_cols=94 Identities=24% Similarity=0.498 Sum_probs=87.0
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh-------------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI------------------- 196 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai------------------- 196 (298)
++++|||+| +++|+++|+++|++||.|.+|.|+.+ +++|||+|.+.++|++|+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 347999999 99999999999999999999999876 489999999999999998
Q ss_pred --------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q psy15187 197 --------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232 (298)
Q Consensus 197 --------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V 232 (298)
+.++|||||+|.+.++|.+|+. +||..|+|+.|.|
T Consensus 82 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V 160 (167)
T 2cjk_A 82 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEI 160 (167)
T ss_dssp HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEE
T ss_pred hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEE
Confidence 2268999999999999999998 8999999999999
Q ss_pred EEcccc
Q psy15187 233 SLARRQ 238 (298)
Q Consensus 233 ~~A~~k 238 (298)
.||.++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999875
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=140.80 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=78.0
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
+.+.++|||+| +++++++|+++|++||.|.+|.|+.|+.+|. ++|||||+|.+.++|.+||..
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~---------------~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRK---------------HLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC---------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCc---------------eeeEEEEEECCHHHHHHHHHH
Confidence 34568999999 9999999999999999999999999988775 899999999999999999999
Q ss_pred hCCcEECCeEEEEEEccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
|||..|+|+.|+|.++......
T Consensus 68 lng~~~~gr~i~V~~a~~~~~~ 89 (110)
T 3s8s_A 68 LHLTSVMGNIIHAQLDIKGQQR 89 (110)
T ss_dssp HTTCEETTEECEEEECSTTHHH
T ss_pred hCCCEECCeEEEEEECCCCcHH
Confidence 9999999999999999865443
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-18 Score=144.77 Aligned_cols=92 Identities=23% Similarity=0.521 Sum_probs=85.5
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-----cCceeEEecChhhhhhhh----------------------
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPESSDKAI---------------------- 196 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-----k~~gfV~f~~~~~adkai---------------------- 196 (298)
.+|||+| .++++++|+++|++||.|.+|.|+.+ +++|||+|.+.++|++|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 3799999 99999999999999999999999876 479999999999999999
Q ss_pred ---------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q psy15187 197 ---------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLK 231 (298)
Q Consensus 197 ---------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~ 231 (298)
+.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 12689999999999999999999999999999999
Q ss_pred EEEccc
Q psy15187 232 VSLARR 237 (298)
Q Consensus 232 V~~A~~ 237 (298)
|.||++
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999863
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=133.70 Aligned_cols=85 Identities=29% Similarity=0.368 Sum_probs=78.4
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
.+.++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||..|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~~~l 70 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKK---------------PKGFAFVTFMFPEHAVKAYAEV 70 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCC---------------CCSEEEEEESSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCC---------------cCeEEEEEECCHHHHHHHHHHh
Confidence 4568999999 8999999999999999999999999887775 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
||..|+|+.|+|.++.++....
T Consensus 71 ~g~~~~g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 71 DGQVFQGRMLHVLPSTIKKEAS 92 (99)
T ss_dssp TTEESSSCEEEEEECCCCSTTC
T ss_pred CCCEECCcEEEEEEcCCCcccc
Confidence 9999999999999999876643
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=137.41 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=74.9
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccC-CeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh-C
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFG-KICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV-N 221 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG-~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l-n 221 (298)
++|||+| +++|+++|+++|++|| .|.+|.|++|+.+|. ++|||||+|.+.++|.+||..| |
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~---------------~rg~aFV~F~~~~~A~~Ai~~~~~ 66 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQ---------------SRGFAFVEFSHLQDATRWMEANQH 66 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCC---------------CSSEEEEECSSHHHHHHHHHTTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCC---------------cCceEEEEecCHHHHHHHHHhcCC
Confidence 6899999 9999999999999999 899999999988886 9999999999999999999988 4
Q ss_pred CcEECCeEEEEEEccccccc
Q psy15187 222 GTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~~~ 241 (298)
+..|+|++|+|.||.+++..
T Consensus 67 ~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 67 SLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp EEEETTEEEEEECCCSCCCC
T ss_pred CeEECCEEEEEEEcCCCCCC
Confidence 66899999999999987653
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=131.16 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=73.2
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
.+++|||+| +++++++|+++|++||.|.+|.|+.++..|. ++|||||+|.+.++|..|+..||
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGK---------------SKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC---------------EEEEEEEEESSHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCc---------------cceEEEEEECCHHHHHHHHHHcC
Confidence 457999999 8999999999999999999999999877665 78999999999999999999999
Q ss_pred CcEECCeEEEEEEccccc
Q psy15187 222 GTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~ 239 (298)
|..|+|+.|+|.|+.+++
T Consensus 70 g~~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 70 GQWLGGRQIRTNWATRKP 87 (87)
T ss_dssp TCEETTEECEEEEEC---
T ss_pred CCEECCeEEEEEecCCCC
Confidence 999999999999998764
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.2e-18 Score=149.14 Aligned_cols=101 Identities=30% Similarity=0.482 Sum_probs=87.0
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh----------------
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI---------------- 196 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai---------------- 196 (298)
.+...++|||+| +++|+++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|++||
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 345568999999 99999999999999999999999976 569999999999999998
Q ss_pred ------------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 197 ------------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 197 ------------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
+.++|||||+|.+.++|.+|+.. +|
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~ 167 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY 167 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence 12589999999999999999986 89
Q ss_pred cEECCeEEEEEEcccccccc
Q psy15187 223 THVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~k~~~~ 242 (298)
..|+|+.|.|.||.++....
T Consensus 168 ~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 168 HTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CEETTEECEEEECC------
T ss_pred cEECCEEEEEEecCChhHhc
Confidence 99999999999999876644
No 10
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=2.7e-18 Score=137.63 Aligned_cols=82 Identities=28% Similarity=0.505 Sum_probs=72.7
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
|...++|||+| +++++++|+++|++||.|.+|.|+.+++. ++|||||+|.+.++|..||..
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~-----------------~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-----------------SKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-----------------EEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC-----------------CCceEEEEECCHHHHHHHHHH
Confidence 34557999999 99999999999999999999999988642 468899999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.++.++..
T Consensus 65 l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 65 MNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp HTTCEETTEECEEEESSCCCC
T ss_pred cCCCEECCEEEEEEECCCccc
Confidence 999999999999999987654
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=2.4e-18 Score=128.89 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=74.4
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|||+| +++++++|+++|++||.|.+|.|+.+...|. ++|||||+|.+.++|..|+..|||.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~---------------~~g~afV~f~~~~~a~~a~~~l~g~ 66 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS---------------SRGYGFVSFTSQDDAQNAMDSMQGQ 66 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC---------------EEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC---------------ccceEEEEECCHHHHHHHHHHhcCC
Confidence 6899999 9999999999999999999999999877775 7899999999999999999999999
Q ss_pred EECCeEEEEEEccccc
Q psy15187 224 HVQGVKLKVSLARRQL 239 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k~ 239 (298)
.|+|+.|+|.|+.+++
T Consensus 67 ~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 67 DLNGRPLRINWAAKLE 82 (83)
T ss_dssp EETTEECEEEECCCCC
T ss_pred eeCCcEEEEEecCcCC
Confidence 9999999999999764
No 12
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=6e-18 Score=134.75 Aligned_cols=88 Identities=22% Similarity=0.383 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
......++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~ 74 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK---------------SKGYGFVSFFNKWDAENAI 74 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC---------------EEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC---------------cceEEEEEECCHHHHHHHH
Confidence 3445668999999 9999999999999999999999999877765 7899999999999999999
Q ss_pred HHhCCcEECCeEEEEEEcccccccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
..|||..|+|+.|+|.|+.++....
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 75 QQMGGQWLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp HHTTTCEETTEECEEEESSCCCCCS
T ss_pred HHhCCCEECCEEEEEEEccCCCCCC
Confidence 9999999999999999999876543
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=134.13 Aligned_cols=88 Identities=25% Similarity=0.359 Sum_probs=79.7
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
......+++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~A~~A 73 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ---------------SKGFAFISFHRREDAARA 73 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCS---------------EEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCc---------------eeeEEEEEECCHHHHHHH
Confidence 34455678999999 9999999999999999999999999877775 789999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEccccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
|..|||..|+|+.|+|.|+.++...
T Consensus 74 ~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 74 IAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp HHHTTTCEETTEECEEEESSCCCCS
T ss_pred HHHcCCCeeCCcEEEEEECCCCCCC
Confidence 9999999999999999999986553
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=130.59 Aligned_cols=83 Identities=28% Similarity=0.534 Sum_probs=77.4
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|..|+..|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~~~l 67 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR---------------SKGYGFITFSDSECARRALEQL 67 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCC---------------CCSEEEEEESCHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCc---------------eeeEEEEEECCHHHHHHHHHHh
Confidence 4568999999 8999999999999999999999999887775 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.|+.++..
T Consensus 68 ~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 68 NGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp TTCCSSSSCCEEEESSCCCC
T ss_pred CCCeeCCcEEEEEEcccccC
Confidence 99999999999999987655
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=6.1e-18 Score=127.19 Aligned_cols=79 Identities=23% Similarity=0.440 Sum_probs=73.9
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|+..|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~~~l 69 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK---------------HRGFAFVEFELAEDAAAAIDNM 69 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTE---------------ECSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCc---------------cccEEEEEECCHHHHHHHHHHh
Confidence 4558999999 9999999999999999999999999877775 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcc
Q psy15187 221 NGTHVQGVKLKVSLAR 236 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~ 236 (298)
||..|+|+.|+|.||+
T Consensus 70 ~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 70 NESELFGRTIRVNLAK 85 (85)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCcEEEEEEcC
Confidence 9999999999999985
No 16
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=131.60 Aligned_cols=84 Identities=29% Similarity=0.412 Sum_probs=77.5
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEE-EEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSV-SMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v-~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
.++++|||+| +++++++|+++|++||.|..| .|+.++..|. ++|||||+|.+.++|..|+..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~---------------~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN---------------SKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCS---------------CCSEEEEEBSSHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCC---------------cCeEEEEEECCHHHHHHHHHH
Confidence 4568999999 999999999999999999999 9998877775 899999999999999999999
Q ss_pred hCCcEECCeEEEEEEccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
|||..|+|+.|+|.|+.++...
T Consensus 68 l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 68 MNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp TTTCEETTEECEEEESCCCCCC
T ss_pred cCCCEECCEEEEEEEecccCCC
Confidence 9999999999999999986553
No 17
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=5.5e-18 Score=130.92 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=76.4
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
+++|||+| +++++++|+++|++||.|.+|.|+.++..|. ++|||||+|.+.++|..|+..|||
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~A~~Ai~~l~g 66 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGR---------------SKGYAFIEFRDLESSASAVRNLNG 66 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCC---------------BCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCc---------------cceEEEEEECCHHHHHHHHHHhCC
Confidence 47999999 9999999999999999999999999877775 899999999999999999999999
Q ss_pred cEECCeEEEEEEccccccc
Q psy15187 223 THVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~k~~~ 241 (298)
..|+|+.|+|.|+.++...
T Consensus 67 ~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 67 YQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp CEETTEECEEEECSCSSGG
T ss_pred CeECCeEEEEEEcCCCCCC
Confidence 9999999999999986553
No 18
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=131.99 Aligned_cols=86 Identities=21% Similarity=0.375 Sum_probs=78.6
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|..||..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK---------------HRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCC---------------CSSEEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCC---------------cceEEEEEECCHHHHHHHHHH
Confidence 34568999999 8999999999999999999999999877775 899999999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
|||..|+|+.|+|.|+.++....
T Consensus 74 l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 74 MNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp HTTEEETTEEEEEEECCCCCCCC
T ss_pred hCCCEECCcEEEEEeCCCCCCCC
Confidence 99999999999999999866533
No 19
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.3e-18 Score=130.39 Aligned_cols=83 Identities=31% Similarity=0.530 Sum_probs=75.9
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecC---ceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKG---RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~---~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
.++++|||+| +++++++|+++|++||.|..|.|+.++. ++. ++|||||+|.+.++|..||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~---------------~~g~afV~f~~~~~a~~A~ 67 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLL---------------SMGFGFVEYKKPEQAQKAL 67 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEE---------------EEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcC---------------cccEEEEEECCHHHHHHHH
Confidence 4558999999 8999999999999999999999998865 555 7899999999999999999
Q ss_pred HHhCCcEECCeEEEEEEcccccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
..|||..|+|+.|+|.|+.++..
T Consensus 68 ~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 68 KQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp HHSTTCEETTEECEEECSSCSSC
T ss_pred HHhCCCeeCCeEEEEEEccCCCC
Confidence 99999999999999999987655
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.3e-18 Score=132.34 Aligned_cols=86 Identities=27% Similarity=0.370 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
......++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|..||
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~ 74 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQ---------------HQGYGFVEFLSEEDADYAI 74 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCS---------------BCSCEEEEESSHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc---------------CCcEEEEEECCHHHHHHHH
Confidence 3445668999999 9999999999999999999999999877775 8999999999999999999
Q ss_pred HHhCCcEECCeEEEEEEcccccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
..|||..|+|+.|+|.|+.++..
T Consensus 75 ~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 75 KIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp HHSSSCBCSSCBCEEEETTTTSC
T ss_pred HHhCCCeECCeEEEEEECCCCCc
Confidence 99999999999999999998655
No 21
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=5.1e-18 Score=147.37 Aligned_cols=96 Identities=28% Similarity=0.475 Sum_probs=88.7
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh--------------------
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI-------------------- 196 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai-------------------- 196 (298)
.++|||+| +++++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|++|+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 37999999 99999999999999999999999865 689999999999999999
Q ss_pred --------------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 197 --------------------------------------------------------TDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 197 --------------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
+.++|||||+|.+.++|.+|+..|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 114899999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.|+.+++.
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSS
T ss_pred cCCEeCCcEEEEEEecCCCC
Confidence 99999999999999998654
No 22
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=132.30 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=79.3
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
....+++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH---------------SKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCC---------------BCSEEEEEESSHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC---------------CccEEEEEECCHHHHHHHHH
Confidence 345568999999 9999999999999999999999999987775 89999999999999999999
Q ss_pred HhC------CcEECCeEEEEEEcccccccc
Q psy15187 219 EVN------GTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 219 ~ln------G~~i~Gr~L~V~~A~~k~~~~ 242 (298)
.|| |..|+|+.|+|.|+.++....
T Consensus 76 ~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 76 AASLEAEGGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp HHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred HhccccccCCcEEcCEEEEEEECCCCccCC
Confidence 999 999999999999999876543
No 23
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=4.1e-18 Score=141.47 Aligned_cols=91 Identities=30% Similarity=0.517 Sum_probs=83.8
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec------CceeEEecChhhhhhhh--------------------
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK------GRGFVTFDSPESSDKAI-------------------- 196 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk------~~gfV~f~~~~~adkai-------------------- 196 (298)
.++|||+| +++++++|+++|+.||.|.+|.|+.++ ++|||+|.+.++|++|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47999999 899999999999999999999999875 89999999999999999
Q ss_pred ---------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeE--
Q psy15187 197 ---------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVK-- 229 (298)
Q Consensus 197 ---------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~-- 229 (298)
+.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccc
Confidence 114899999999999999999999999999964
Q ss_pred EEEEEc
Q psy15187 230 LKVSLA 235 (298)
Q Consensus 230 L~V~~A 235 (298)
|.|.||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 888886
No 24
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=4.5e-18 Score=141.87 Aligned_cols=92 Identities=26% Similarity=0.392 Sum_probs=84.7
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh-------------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI------------------- 196 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai------------------- 196 (298)
++++|||+| +++++++|+++|++||.|.+|.|+.+ +++|||+|.+.++|++|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 357999999 99999999999999999999999877 379999999999999999
Q ss_pred ----------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECC--e
Q psy15187 197 ----------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQG--V 228 (298)
Q Consensus 197 ----------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~G--r 228 (298)
+.++|||||+|.+.++|.+|+..|||..|+| +
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 161 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 161 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe
Confidence 1146999999999999999999999999988 9
Q ss_pred EEEEEEc
Q psy15187 229 KLKVSLA 235 (298)
Q Consensus 229 ~L~V~~A 235 (298)
+|+|.||
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 9999986
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=133.64 Aligned_cols=83 Identities=19% Similarity=0.391 Sum_probs=76.8
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|+..|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~~~l 85 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY---------------LKGYTLVEYETYKEAQAAMEGL 85 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS---------------EEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCc---------------eeeEEEEEECCHHHHHHHHHHh
Confidence 4558999999 9999999999999999999999999987775 7899999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.||.+++.
T Consensus 86 ~g~~~~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 86 NGQDLMGQPISVDWCFVRGP 105 (106)
T ss_dssp TTCBSSSSBCEEEESEESSC
T ss_pred cCCEECCcEEEEEeecCCCC
Confidence 99999999999999987653
No 26
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.3e-18 Score=130.19 Aligned_cols=83 Identities=29% Similarity=0.407 Sum_probs=76.5
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||. |
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~~-~ 71 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR---------------PRGFGFITFEDEQSVDQAVN-M 71 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCS---------------CCSEEEEEESSHHHHHHHHH-H
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC---------------CCceEEEEECCHHHHHHHHH-h
Confidence 4558999999 8999999999999999999999999877775 89999999999999999998 9
Q ss_pred CCcEECCeEEEEEEccccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~~ 241 (298)
||..|+|+.|+|.++.++...
T Consensus 72 ~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 72 HFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp CCCBSSSCBCEEEECCCCCCC
T ss_pred CCCEECCeEEEEEECCCCccc
Confidence 999999999999999986553
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=4.9e-18 Score=142.33 Aligned_cols=93 Identities=25% Similarity=0.336 Sum_probs=84.2
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee--------cCceeEEecChhhhhhhh-----------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE--------KGRGFVTFDSPESSDKAI----------------- 196 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d--------k~~gfV~f~~~~~adkai----------------- 196 (298)
+.++|||+| +++++++|+++|++||+|.+|.|+.+ +++|||+|.+.++|++|+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 347999999 99999999999999999999999865 568999999999999998
Q ss_pred ---------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEE
Q psy15187 197 ---------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHV 225 (298)
Q Consensus 197 ---------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i 225 (298)
+.++|||||+|.+.++|..|+..|||..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 12589999999999999999999999877
Q ss_pred C---CeEEEEEEcc
Q psy15187 226 Q---GVKLKVSLAR 236 (298)
Q Consensus 226 ~---Gr~L~V~~A~ 236 (298)
. |++|+|.||.
T Consensus 162 ~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 162 MEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTCSSCCEEEECC
T ss_pred cCCCCCCeEEEecC
Confidence 7 4999999984
No 28
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=7.7e-18 Score=134.27 Aligned_cols=84 Identities=29% Similarity=0.466 Sum_probs=77.3
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|..||..|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNL---------------SKCFGFVSYDNPVSAQAAIQSM 87 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCS---------------EEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCC---------------cCccEEEEECCHHHHHHHHHHc
Confidence 3457999999 9999999999999999999999999877675 7899999999999999999999
Q ss_pred CCcEECCeEEEEEEccccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~~ 241 (298)
||..|+|+.|+|.|+.++...
T Consensus 88 ~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 88 NGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp TTCEETTEECEEECCCCSCCC
T ss_pred CCCEECCEEEEEEEcCCCCcC
Confidence 999999999999999986653
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.9e-18 Score=132.23 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
...+.++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|..||.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKA---------------PRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCS---------------BCSCEEEEESSSSHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC---------------CCeEEEEEECCHHHHHHHHH
Confidence 345568999999 8999999999999999999999999887775 89999999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..|+|+.|+|.|+.....
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 74 AMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp HHSSCCBTTBCCEEEECSSCCS
T ss_pred HcCCCEECCcEEEEEECCcCCC
Confidence 9999999999999999997554
No 30
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=128.23 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+...++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|..|+.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~---------------~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRK---------------SKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCC---------------CTTCEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC---------------cccEEEEEECCHHHHHHHHH
Confidence 345668999999 8999999999999999999999999887775 89999999999999999999
Q ss_pred HhCCcEECCeEEEEEEcc
Q psy15187 219 EVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~ 236 (298)
.|||..|+|+.|+|.||+
T Consensus 77 ~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 77 AINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HTTTEEETTEEEEEEECC
T ss_pred HcCCCeeCCcEEEEEecC
Confidence 999999999999999985
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=129.80 Aligned_cols=83 Identities=13% Similarity=0.312 Sum_probs=75.7
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.|+.++ .|. ++|||||+|.+.++|..|+..
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------------~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGK---------------PKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSC---------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCC---------------EEeEEEEEECCHHHHHHHHHH
Confidence 34567999999 899999999999999999999999887 554 788999999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|+.+++.
T Consensus 78 l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 78 MDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp HTTEESSSCEEEEEECCCCSC
T ss_pred hCCCEECCEEEEEEECCCCCC
Confidence 999999999999999987654
No 32
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=125.98 Aligned_cols=82 Identities=18% Similarity=0.417 Sum_probs=74.1
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
..++|||+| +++++++|+++|++||.|..|.|+.++..+- .++|||||+|.+.++|..|+..||
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~--------------~~~g~afV~f~~~~~a~~A~~~l~ 68 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH--------------LSKGYAYVEFENPDEAEKALKHMD 68 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEE--------------EECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCC--------------CCCcEEEEEEecHHHHHHHHHHcC
Confidence 347999999 9999999999999999999999998875542 368899999999999999999999
Q ss_pred CcEECCeEEEEEEccccc
Q psy15187 222 GTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~ 239 (298)
|..|+|+.|+|.++.+..
T Consensus 69 g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 69 GGQIDGQEITATAVLAPW 86 (88)
T ss_dssp TCEETTEECEEEEECCCC
T ss_pred CCeECCeEEEEEECCCCC
Confidence 999999999999998643
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=5.7e-18 Score=142.03 Aligned_cols=93 Identities=25% Similarity=0.397 Sum_probs=86.4
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhcc----C-------CeeEEEEeeecCceeEEecChhhhhhhh--------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIF----G-------KICSVSMEVEKGRGFVTFDSPESSDKAI-------------- 196 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~f----G-------~I~~v~i~~dk~~gfV~f~~~~~adkai-------------- 196 (298)
+.++|||+| +++|+++|+++|++| | .|.++.+..++++|||+|.+.++|++|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeee
Confidence 347999999 999999999999999 7 8999999999999999999999999998
Q ss_pred --------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEEC
Q psy15187 197 --------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQ 226 (298)
Q Consensus 197 --------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~ 226 (298)
+.++|||||+|.+.++|.+|+..|||..|+
T Consensus 83 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 83 RRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp ECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred cCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 124899999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy15187 227 GVKLKVSLAR 236 (298)
Q Consensus 227 Gr~L~V~~A~ 236 (298)
|+.|.|.||.
T Consensus 163 g~~l~V~~As 172 (172)
T 2g4b_A 163 DKKLLVQRAS 172 (172)
T ss_dssp TEECEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999999973
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=128.82 Aligned_cols=84 Identities=25% Similarity=0.352 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
...+.++++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|..|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~---------------~~g~afV~f~~~~~A~~A 73 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR---------------SRGFAFVYFENVDDAKEA 73 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSS---------------EEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC---------------cccEEEEEECCHHHHHHH
Confidence 34455668999999 8999999999999999999999999877665 788999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~ 237 (298)
+..|||..|+|+.|+|.|++.
T Consensus 74 ~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 74 KERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHHTTEEETTEEEEEECCSC
T ss_pred HHHhCCCEECCEEEEEEecCC
Confidence 999999999999999999874
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=9.1e-18 Score=132.66 Aligned_cols=83 Identities=18% Similarity=0.379 Sum_probs=77.1
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||..|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~A~~Ai~~l 88 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF---------------SKGYALVEYETHKQALAAKEAL 88 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSS---------------BCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC---------------cceEEEEEECCHHHHHHHHHHc
Confidence 4558999999 9999999999999999999999999887776 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.|+.++..
T Consensus 89 ~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 89 NGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp TTCEETTEECEEEESEESSC
T ss_pred CCCEECCcEEEEEEcccCCC
Confidence 99999999999999987654
No 36
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=131.32 Aligned_cols=84 Identities=30% Similarity=0.436 Sum_probs=77.0
Q ss_pred CCCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeE--------EEEeeecCceeEEecChhhhhhhhhcCCceEEEEe
Q psy15187 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICS--------VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTF 207 (298)
Q Consensus 138 ~~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~--------v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F 207 (298)
....+...++|||+| +++++++|+++|++||.|.. |.|+.++..|. ++|||||+|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~---------------~~G~afV~f 70 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK---------------LKGEATVSF 70 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCS---------------EEEEEEEEB
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCC---------------eeeEEEEEE
Confidence 344566778999999 99999999999999999999 99999887775 889999999
Q ss_pred CCHHHHHHHHHHhCCcEECCeEEEEEEcc
Q psy15187 208 DSPESSDKAITEVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 208 ~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~ 236 (298)
.+.++|..|+..|||..|+|+.|+|.+|+
T Consensus 71 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 71 DDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp SSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 99999999999999999999999999984
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=131.28 Aligned_cols=88 Identities=26% Similarity=0.440 Sum_probs=79.2
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-cCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-k~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
......++|||+| +++++++|+++|++||.|..|.|+.+ +..|. ++|||||+|.+.++|..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~---------------~~g~afV~f~~~~~a~~A 74 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGA---------------HRGFGFVDFITKQDAKKA 74 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCS---------------SCSEEEEEESSHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCC---------------cCceEEEEECCHHHHHHH
Confidence 3345668999999 89999999999999999999999988 66775 899999999999999999
Q ss_pred HHHh-CCcEECCeEEEEEEcccccccc
Q psy15187 217 ITEV-NGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 217 i~~l-nG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
|..| ||..|+|+.|+|.|+.++....
T Consensus 75 ~~~l~~~~~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 75 FNALCHSTHLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp HHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred HHHhccCCeECCCEEEEEeCCCCCCCC
Confidence 9999 9999999999999999876533
No 38
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=135.62 Aligned_cols=86 Identities=30% Similarity=0.409 Sum_probs=78.6
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.....++|||+| +++++++|+++|+.||.|.+|.|+.++..|. ++|||||+|.+.++|.+||.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~~ 102 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ---------------SRGYGFVKFQSGSSAQQAIA 102 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTE---------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC---------------cceEEEEEECCHHHHHHHHH
Confidence 344568999999 9999999999999999999999999987776 78999999999999999999
Q ss_pred HhCCcEECCeEEEEEEccccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
.|||..|+|+.|+|.|+.++...
T Consensus 103 ~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 103 GLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp HTTTEECSSCEEEEEESSCCCCC
T ss_pred HhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999999986553
No 39
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1e-17 Score=131.32 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=79.0
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.......++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~A~~A 71 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGM---------------HKGCAFLTYCERESALKA 71 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCS---------------CCSEEEEEESSHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC---------------cceEEEEEECCHHHHHHH
Confidence 34455668999999 9999999999999999999999999887775 899999999999999999
Q ss_pred HHHhCCcEE---CCeEEEEEEcccccc
Q psy15187 217 ITEVNGTHV---QGVKLKVSLARRQLK 240 (298)
Q Consensus 217 i~~lnG~~i---~Gr~L~V~~A~~k~~ 240 (298)
|..|||..+ +|+.|+|.|+.++..
T Consensus 72 ~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 72 QSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp HHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred HHHhcCCcccCCCCceEEEEECCcccc
Confidence 999999998 899999999997654
No 40
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=1.9e-18 Score=135.32 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=75.8
Q ss_pred CcEEEEcC--C------CCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 145 GNTIFVQG--A------GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 145 ~~tLfVgn--~------~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
+++|||+| + ++++++|+++|++||.|.+|.|+.++.+|. ++|||||+|.+.++|.+|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~---------------~kG~afV~f~~~~~A~~A 70 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGK---------------TKGFLFVECGSMNDAKKI 70 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTE---------------ECSEEEEEESSHHHHHHH
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCc---------------cceEEEEEECCHHHHHHH
Confidence 47999999 7 899999999999999999999999988886 899999999999999999
Q ss_pred HHHhCCcEECC-eEEEEEEcccccc
Q psy15187 217 ITEVNGTHVQG-VKLKVSLARRQLK 240 (298)
Q Consensus 217 i~~lnG~~i~G-r~L~V~~A~~k~~ 240 (298)
|..|||..|+| +.|+|.+|.++..
T Consensus 71 i~~lng~~~~g~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 71 IKSFHGKRLDLKHRLFLYTMKDVER 95 (100)
T ss_dssp HHHHTTCBSSSSCBCEEEESHHHHH
T ss_pred HHHhCCcccCCCeEEEEEECchhhh
Confidence 99999999999 9999999987544
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=133.55 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=72.1
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCC--eeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGK--ICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~--I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
-+||||+| +++|+++|+++|++||. |.+|.|++|+.+|. ++|||||+|.+.++|.+||..|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~---------------srG~aFV~f~~~~~A~~Ai~~l 73 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ---------------NRGFAFVQLSSAMDASQLLQIL 73 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS---------------CSSEEEEECSSSHHHHHHHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC---------------CceEeEEEECCHHHHHHHHHHh
Confidence 36999999 99999999999999995 67899999988886 9999999999999999999999
Q ss_pred CCc----EECCeEEEEEEccc
Q psy15187 221 NGT----HVQGVKLKVSLARR 237 (298)
Q Consensus 221 nG~----~i~Gr~L~V~~A~~ 237 (298)
||. .|+|++|.|+||+.
T Consensus 74 ng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 74 QSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HSSSSCEEETTEEEEEEECCC
T ss_pred cCCCCCceECCEEEEEEEccC
Confidence 996 59999999999974
No 42
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=133.17 Aligned_cols=87 Identities=28% Similarity=0.489 Sum_probs=79.3
Q ss_pred CCCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHH
Q psy15187 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215 (298)
Q Consensus 138 ~~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~ 215 (298)
........++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~F~~~~~A~~ 83 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR---------------SKGYGFITFSDSECAKK 83 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTE---------------EEEEEEEEESCHHHHHH
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc---------------cceEEEEEECCHHHHHH
Confidence 344556678999999 8999999999999999999999999987776 88999999999999999
Q ss_pred HHHHhCCcEECCeEEEEEEccccc
Q psy15187 216 AITEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 216 Ai~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|+..|||..|+|+.|+|.++.++.
T Consensus 84 Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 84 ALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp HHHHHTTCCSSSSCCEEECSCSSC
T ss_pred HHHHcCCCEECCEEEEEEEcccCC
Confidence 999999999999999999998754
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=130.24 Aligned_cols=84 Identities=27% Similarity=0.459 Sum_probs=77.5
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|..||..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQR---------------SRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCS---------------CCSEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC---------------cccEEEEEECCHHHHHHHHHH
Confidence 34568999999 9999999999999999999999999877775 889999999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|+.++..
T Consensus 74 l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 74 MNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp HTTCCTTSCCCEEEEEECCCC
T ss_pred hCCCEECCeEEEEEECCCCCC
Confidence 999999999999999997655
No 44
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=131.95 Aligned_cols=86 Identities=27% Similarity=0.453 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCee--------EEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKIC--------SVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSP 210 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~--------~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~ 210 (298)
.....++|||+| +++++++|+++|++||.|. .|.|+.++..|. ++|||||+|.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~---------------~~g~afV~f~~~ 75 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGK---------------PKGDATVSYEDP 75 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCS---------------BCSEEEEEBSSH
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCC---------------eeeEEEEEECCH
Confidence 345668999999 8999999999999999999 699998877775 899999999999
Q ss_pred HHHHHHHHHhCCcEECCeEEEEEEccccccc
Q psy15187 211 ESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 211 e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
++|..||..|||..|+|+.|+|.|+.++...
T Consensus 76 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 76 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred HHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 9999999999999999999999999986653
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=130.53 Aligned_cols=87 Identities=38% Similarity=0.511 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.......++|||+| +++++++|+++|++||.|..|.|+.+ .|. ++|||||+|.+.++|..|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~---------------~~g~afV~f~~~~~A~~A 71 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGR---------------SKGFGFVCFSSPEEATKA 71 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSS---------------EEEEEEEEESSHHHHHHH
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCC---------------cCEEEEEEECCHHHHHHH
Confidence 34445678999999 99999999999999999999999987 443 678899999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
|..|||..|+|+.|+|.|+.++....
T Consensus 72 ~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 72 VTEMNGRIVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp HHHHTTCBSSSSBCEEEECSSCCCCC
T ss_pred HHHhCCCEeCCcEEEEEEecccccCC
Confidence 99999999999999999999876533
No 46
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2e-17 Score=129.44 Aligned_cols=84 Identities=24% Similarity=0.268 Sum_probs=76.0
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+++|||+| +++++++|+++|++||.|..|.|+.++ .|. ++|||||+|.+.++|..||..|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------------~~g~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGS---------------SKGCAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSC---------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCC---------------cCcEEEEEeCCHHHHHHHHHHH
Confidence 4568999999 999999999999999999999999886 454 7889999999999999999999
Q ss_pred CCcEECC---eEEEEEEcccccccc
Q psy15187 221 NGTHVQG---VKLKVSLARRQLKVA 242 (298)
Q Consensus 221 nG~~i~G---r~L~V~~A~~k~~~~ 242 (298)
||..|.| +.|+|.||.++....
T Consensus 77 ~g~~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 77 HGSQTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp SSCCCCTTCSSCCEEEESCSSCCCS
T ss_pred cCCccCCCCCccEEEEECccCcccC
Confidence 9999998 999999999876533
No 47
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=133.48 Aligned_cols=82 Identities=23% Similarity=0.438 Sum_probs=75.1
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.++ .|. ++|||||+|.+.++|..||..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------------~~g~afV~F~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSK---------------SRGFAFITFENPADAKNAAKDM 68 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTT---------------CCCEEEEECSSHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCC---------------cccEEEEEECCHHHHHHHHHHh
Confidence 3457999999 899999999999999999999999887 554 8899999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.|+.++..
T Consensus 69 ~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 69 NGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp SSCBCSSSBCEEEECCCSSC
T ss_pred CCCEECCEEEEEEECCCCCC
Confidence 99999999999999987544
No 48
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-17 Score=126.30 Aligned_cols=87 Identities=29% Similarity=0.423 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.......++|||+| +++++++|+++|++||.|..|.|+.+... ++|||||+|.+.++|..|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-----------------~~g~afV~f~~~~~a~~A 71 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-----------------SKGFGFVTFENSADADRA 71 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-----------------TCCEEEEEESCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-----------------CcEEEEEEECCHHHHHHH
Confidence 34445668999999 99999999999999999999999887531 478899999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
|..|||..|+|+.|+|.|+.++....
T Consensus 72 ~~~l~g~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 72 REKLHGTVVEGRKIEVNNATARVMTN 97 (103)
T ss_dssp HHHHTTCEETTEECEEEECCSSCCCC
T ss_pred HHHhCCCEECCEEEEEEEcccCCCCC
Confidence 99999999999999999999876533
No 49
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=1.9e-18 Score=132.33 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=69.6
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccC--CeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFG--KICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG--~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
.+|||+| +++++++|+++|++|| .|.+|.|+.++..|. ++|||||+|.+.++|.+||..||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~---------------~kG~afV~f~~~~~a~~Ai~~l~ 66 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ---------------SKGFALVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCC---------------EEEEEEECC-CHHHHHHHHHHGG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCc---------------cCcEEEEEECCHHHHHHHHHHcC
Confidence 4799999 9999999999999999 999999999988776 89999999999999999999999
Q ss_pred CcEECCeEEEEEEcccccc
Q psy15187 222 GTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~~ 240 (298)
|..|+|+.|+|.++.+.+.
T Consensus 67 g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 67 KRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp GSCSSSCCCEECCC-----
T ss_pred CCeeCCEEEEEEECCCCcc
Confidence 9999999999999987654
No 50
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.4e-17 Score=134.75 Aligned_cols=85 Identities=19% Similarity=0.376 Sum_probs=78.0
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
...+++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~~~ 83 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY---------------LKGYTLVEYETYKEAQAAMEG 83 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSS---------------BCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc---------------cceEEEEEECCHHHHHHHHHH
Confidence 34568999999 9999999999999999999999999877775 899999999999999999999
Q ss_pred hCCcEECCeEEEEEEccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
|||..|+|+.|+|.|+.++...
T Consensus 84 l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 84 LNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HTTCBSSSSBCEEEESEESSSC
T ss_pred hCCCeeCCeEEEEEEecCCCCC
Confidence 9999999999999999876553
No 51
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-17 Score=125.85 Aligned_cols=83 Identities=24% Similarity=0.325 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.....++|||+| +++++++|+++|++||.|..|.|+.++.. ++|||||+|.+.++|..||.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-----------------~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-----------------NDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-----------------SCCEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-----------------CCCEEEEEECCHHHHHHHHH
Confidence 345568999999 99999999999999999999999987432 46789999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..|+|+.|+|.|+.++..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 74 AMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp HHTTEEETTEEEEEEECCCTTC
T ss_pred HhCCCCcCCCeEEEEECCCCcc
Confidence 9999999999999999998654
No 52
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=129.17 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=76.0
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCee-EEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKIC-SVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~-~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
....++|||+| +++++++|+++|++||.|. .|.|+.++..|. ++|||||+|.+.++|..|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~---------------~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGI---------------PAGYCFVEFADLATAEKCLH 70 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCC---------------EEEEEEEECSCHHHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCC---------------cCCEEEEEeCCHHHHHHHHH
Confidence 34568999999 9999999999999999999 999999987775 88999999999999999999
Q ss_pred HhCCcEECCeE----EEEEEcccc
Q psy15187 219 EVNGTHVQGVK----LKVSLARRQ 238 (298)
Q Consensus 219 ~lnG~~i~Gr~----L~V~~A~~k 238 (298)
.|||..|+|+. |+|.||.+.
T Consensus 71 ~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 71 KINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp TTTTSEESSCSSCEECCEEETTCC
T ss_pred HHcCCccCCCCcceeEEEeecCCC
Confidence 99999999999 999999864
No 53
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.2e-17 Score=133.51 Aligned_cols=79 Identities=30% Similarity=0.513 Sum_probs=73.5
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||..|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~---------------~~g~afV~f~~~~~A~~A~~~l 102 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSL---------------SKCFGFVSFDNPDSAQVAIKAM 102 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSC---------------CCCEEEEEEESSHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC---------------cCcEEEEEECCHHHHHHHHHHc
Confidence 4458999999 9999999999999999999999999887775 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcc
Q psy15187 221 NGTHVQGVKLKVSLAR 236 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~ 236 (298)
||..|+|+.|+|.|++
T Consensus 103 ~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 103 NGFQVGTKRLKVQLKK 118 (118)
T ss_dssp CCCEETTEECCEEEC-
T ss_pred CCCEECCEEEEEEecC
Confidence 9999999999999985
No 54
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=128.38 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=75.1
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCc-eeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGR-GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~-gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
...++|||+| +++++++|+++|++|| |..|.|+.++.. |. ++|||||+|.+.++|.+|| .
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~---------------~~g~afV~f~~~~~a~~A~-~ 75 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPER---------------LKGFGYAEFEDLDSLLSAL-S 75 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTS---------------BCSCEEEEESSHHHHHHHH-G
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCC---------------cCeEEEEEECCHHHHHHHH-h
Confidence 4458999999 9999999999999999 999999988776 65 8999999999999999999 9
Q ss_pred hCCcEECCeEEEEEEccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
|||..|+|+.|+|.++.++...
T Consensus 76 l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 76 LNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp GGTCEETTEECEEEECCCCCCC
T ss_pred cCCCEeCCcEEEEEEccCCCCC
Confidence 9999999999999999986653
No 55
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-17 Score=129.37 Aligned_cols=84 Identities=29% Similarity=0.366 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.....++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|.+||.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~Ai~ 77 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGK---------------SRGYGFVTMADRAAAERACK 77 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCC---------------CCSEEEEEESSHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCc---------------cceEEEEEECCHHHHHHHHH
Confidence 345568999999 9999999999999999999999999887776 89999999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.||+ .|+|+.|+|.|+.....
T Consensus 78 ~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 78 DPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp CSSC-EETTEECEEEESTTTCC
T ss_pred hCCC-cCCCEEEEEEEcccCCC
Confidence 9998 89999999999986544
No 56
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=4.2e-17 Score=127.53 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=75.1
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++|| |..|.|+.++..|. ++|||||+|.+.++|..|| .
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~a~~A~-~ 74 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDK---------------FKGFCYVEFDEVDSLKEAL-T 74 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCS---------------EEEEEEEEESSHHHHHHHG-G
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCc---------------cceEEEEEECCHHHHHHHH-h
Confidence 34568999999 9999999999999997 99999999987775 7899999999999999999 9
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|+.++..
T Consensus 75 l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 75 YDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp GTTCEETTEECEEEECCCCCC
T ss_pred hCCCeECCeEEEEEEecCCCC
Confidence 999999999999999997654
No 57
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=3.9e-17 Score=137.67 Aligned_cols=100 Identities=17% Similarity=0.288 Sum_probs=86.7
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEE-----eeecCceeEEecChhhhhhhh----------------
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSM-----EVEKGRGFVTFDSPESSDKAI---------------- 196 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i-----~~dk~~gfV~f~~~~~adkai---------------- 196 (298)
..+...++|||+| +++++++|+++|..||.|..+.| -..+++|||+|.+.++|++|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 3456678999999 99999999999999997655222 223799999999999999999
Q ss_pred ---------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEE
Q psy15187 197 ---------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLK 231 (298)
Q Consensus 197 ---------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~ 231 (298)
+.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 88 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 167 (175)
T 1fje_B 88 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 167 (175)
T ss_dssp CCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEE
T ss_pred CCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 13689999999999999999999999999999999
Q ss_pred EEEccccc
Q psy15187 232 VSLARRQL 239 (298)
Q Consensus 232 V~~A~~k~ 239 (298)
|.||.+++
T Consensus 168 v~~a~~k~ 175 (175)
T 1fje_B 168 LYYTGEKG 175 (175)
T ss_dssp EEECSSCC
T ss_pred EEecCCCC
Confidence 99998763
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.4e-17 Score=128.40 Aligned_cols=83 Identities=25% Similarity=0.357 Sum_probs=74.9
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
...+++|||+| +++++++|+++|++||.|..|.|+.++. |. ++|||||+|.+.++|..||..
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~---------------~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GK---------------SRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CS---------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CC---------------eeeEEEEEECCHHHHHHHHHH
Confidence 34568999999 9999999999999999999999998864 54 788999999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|+.....
T Consensus 76 l~g~~~~g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 76 FNGQLLFDRPMHVKMDERALP 96 (114)
T ss_dssp HTTCEETTEECEEEECSCCCC
T ss_pred hCCCEeCCCEEEEEEcccCCC
Confidence 999999999999999986443
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=130.03 Aligned_cols=85 Identities=18% Similarity=0.313 Sum_probs=77.0
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhc-cCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSI-FGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~-fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
+..+++|||+| +++++++|+++|++ ||.|..|.|+.++ .|. ++|||||+|.+.++|..||.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~---------------~~g~afV~f~~~~~a~~A~~ 69 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGV---------------SKGYGFVKFTDELEQKRALT 69 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCC---------------EEEEEEEEESCHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCC---------------ccceEEEEECCHHHHHHHHH
Confidence 34568999999 99999999999999 9999999999987 665 78999999999999999999
Q ss_pred HhCCcE-ECCeEEEEEEcccccccc
Q psy15187 219 EVNGTH-VQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 219 ~lnG~~-i~Gr~L~V~~A~~k~~~~ 242 (298)
.|||.. |+|+.|+|.|+.++....
T Consensus 70 ~l~g~~~~~g~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 70 ECQGAVGLGSKPVRLSVAIPKASRV 94 (104)
T ss_dssp HTTTCCSSSSSCCCCCBCCCCCSCC
T ss_pred HccCCcccCCEeEEEEEccCCCcCC
Confidence 999999 999999999998765533
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=126.26 Aligned_cols=80 Identities=31% Similarity=0.440 Sum_probs=73.2
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.|+.++. |. ++|||||+|.+.++|..|+..
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~---------------~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GK---------------PKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SC---------------EEEEEEEEESSTHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CC---------------CceEEEEEECCHHHHHHHHHH
Confidence 34558999999 8999999999999999999999998865 54 788999999999999999999
Q ss_pred hCCcEECCeEEEEEEccc
Q psy15187 220 VNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~ 237 (298)
|||..|+|+.|+|.|++.
T Consensus 77 l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 77 LNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp HTTCEETTEECEEECCCC
T ss_pred hCCCEECCCEEEEEEcCC
Confidence 999999999999999863
No 61
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=4.4e-17 Score=136.70 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=77.7
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.|+.++..+. ++|||||+|.+.++|..||..
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKT---------------ACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC---------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc---------------cceEEEEEECCHHHHHHHHHH
Confidence 34568999999 9999999999999999999999999987775 789999999999999999999
Q ss_pred hCCcEECCeEEEEEEccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
|||..|+|+.|+|.||.+....
T Consensus 101 l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 101 INGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp TTTSEETTEECEEEEESCCCTT
T ss_pred hCCCEECCeEEEEEECCCCCCc
Confidence 9999999999999999875543
No 62
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=140.27 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=75.2
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccC--CeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFG--KICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG--~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..++|||+| +++++++|+++|++|| .|.+|.|+.|+..|. ++|||||+|.+.++|..||..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~---------------skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQ---------------SKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCC---------------EEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCc---------------cceEEEEEECCHHHHHHHHHH
Confidence 347999999 9999999999999999 999999999988886 899999999999999999999
Q ss_pred hCCcEECCeEEEEEEccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|||..|+|+.|.|.+|.++.
T Consensus 119 lng~~~~Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 119 LPGKVLNGEKVDVRPATRQN 138 (156)
T ss_dssp STTCEETTEECEEEECCHHH
T ss_pred cCCCEECCeEeEEEEcCCCc
Confidence 99999999999999998754
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=4.7e-17 Score=123.16 Aligned_cols=79 Identities=20% Similarity=0.404 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.....++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|+.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR---------------SRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCC---------------EEEEEEEEESSTHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc---------------cccEEEEEECCHHHHHHHHH
Confidence 345668999999 9999999999999999999999999887775 88999999999999999995
Q ss_pred HhCCcEECCeEEEEEEc
Q psy15187 219 EVNGTHVQGVKLKVSLA 235 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A 235 (298)
++|..|+|+.|.|.+|
T Consensus 72 -~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 72 -QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp -SSCEEETTEEEEEEEC
T ss_pred -hCCCEECCEEEEEEeC
Confidence 5889999999999986
No 64
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=9.8e-18 Score=137.23 Aligned_cols=83 Identities=11% Similarity=0.245 Sum_probs=76.2
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeE--EEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICS--VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~--v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
...+++|||+| +++|+++|+++|++||.|.. |.|+.|+.+|. ++|||||+|.+. +|.+||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~---------------~rG~aFV~f~~~-~a~~Ai 83 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQL---------------NRGFAFIQLSTI-EAAQLL 83 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSS---------------BCSCEEEECCHH-HHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCC---------------cceEEEEEECCH-HHHHHH
Confidence 35567999999 99999999999999999976 99999988886 899999999999 999999
Q ss_pred HHhCCc----EECCeEEEEEEcccccc
Q psy15187 218 TEVNGT----HVQGVKLKVSLARRQLK 240 (298)
Q Consensus 218 ~~lnG~----~i~Gr~L~V~~A~~k~~ 240 (298)
..|||. .|+|+.|+|.|+.++..
T Consensus 84 ~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 84 QILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp HHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred HHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 999999 99999999999987544
No 65
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=4.9e-17 Score=123.23 Aligned_cols=77 Identities=23% Similarity=0.384 Sum_probs=72.5
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|+ .|||.
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~a~-~~~g~ 70 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGH---------------PKGFAYIEFSDKESVRTSL-ALDES 70 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSS---------------CCEEEEEEESSTHHHHHHG-GGTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC---------------cceEEEEEECCHHHHHHHH-hcCCC
Confidence 6899999 9999999999999999999999999877775 8999999999999999999 99999
Q ss_pred EECCeEEEEEEcccc
Q psy15187 224 HVQGVKLKVSLARRQ 238 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k 238 (298)
.|+|+.|+|.++++.
T Consensus 71 ~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 71 LFRGRQIKVIPKRTN 85 (89)
T ss_dssp EETTEECEEEETTTT
T ss_pred EECCcEEEEEEccCC
Confidence 999999999999863
No 66
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=3.8e-17 Score=129.84 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=73.7
Q ss_pred CCCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHH
Q psy15187 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215 (298)
Q Consensus 138 ~~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~ 215 (298)
....+..+++|||+| +++++++|+++|++||.|.+|.|+.++..|. ++|||||+|.+.++|.+
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~---------------~kg~afV~f~~~~~A~~ 82 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR---------------SRGFGFVTFMDQAGVDK 82 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCC---------------CTTCEEEEESSHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCC---------------cCcEEEEEECCHHHHHH
Confidence 334456668999999 9999999999999999999999999887776 89999999999999999
Q ss_pred HHHHhCCcEECCeEEEEEEcccccc
Q psy15187 216 AITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 216 Ai~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..+ |..|+|+.|.|.++.++..
T Consensus 83 Ai~~~-~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 83 VLAQS-RHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp HHHSS-CEEETTEEEEEEECCCCCC
T ss_pred HHHHC-CCcCCCEEEEEEEccCCCC
Confidence 99986 5999999999999987654
No 67
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=5.2e-17 Score=127.51 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
....+++|||+| +.+++++|+++|++||.|..|.|+.+. .|. ++|||||+|.+.++|..||.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------------~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGR---------------SLGTADVHFERKADALKAMK 88 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSC---------------EEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCC---------------cceEEEEEECCHHHHHHHHH
Confidence 345568999999 999999999999999999999999887 664 78899999999999999999
Q ss_pred HhCCcEECCeEEEEEEcc
Q psy15187 219 EVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~ 236 (298)
.|||..|+|+.|+|.|+.
T Consensus 89 ~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 89 QYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEeCCcEEEEEEeC
Confidence 999999999999999985
No 68
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=130.33 Aligned_cols=87 Identities=28% Similarity=0.329 Sum_probs=76.4
Q ss_pred CCCCcEEEEcC--CCCCHHHHH---HHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLR---QHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~---~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
....++|||+| +++++++|+ ++|++||.|..|.|+.++.++. .+.++|||||+|.+.++|..|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~------------~~~~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG------------SQGPSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS------------SSCCCEEEEEEESSHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCc------------cCCCCeEEEEEECcHHHHHHH
Confidence 34567999999 999999999 9999999999999998876542 012678999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|..|||..|+|+.|+|.||.+++.
T Consensus 80 i~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 80 IQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp HHHHTTEEETTEEEEEESCCCCSC
T ss_pred HHHhCCCEECCEEEEEEecccccc
Confidence 999999999999999999998753
No 69
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=128.40 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.....++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~---------------~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQ---------------SRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC---------------EEEEEEEEESSTTHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCC---------------cceEEEEEECCHHHHHHHHH
Confidence 345668999999 9999999999999999999999999987775 88999999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
. ||..|+|+.|.|.++.++..
T Consensus 77 ~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 77 S-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp H-CSEEETTEEEBCCCSCCSSC
T ss_pred h-CCCeECCEEEEEEEccCCCC
Confidence 8 99999999999999987655
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.9e-17 Score=124.82 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=71.4
Q ss_pred CCCcEEEEcC--CCCCHHHHH----HHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLR----QHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~----~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
..+++|||+| +++++++|+ ++|++||.|.+|.|+.++.. +|||||+|.+.++|.+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------------------rg~afV~f~~~~~A~~A 68 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY------------------QLKAVVQMENLQDAIGA 68 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST------------------TCCEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC------------------CeEEEEEECCHHHHHHH
Confidence 4568999999 999999999 99999999999999877431 35699999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|..|||..|+|+.|+|.+|++...
T Consensus 69 i~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 69 VNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp HHHHTTEEETTEEEEEEECCCSSC
T ss_pred HHHhCCCEECCeEEEEEEcCCCCC
Confidence 999999999999999999987544
No 71
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=128.72 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=75.7
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCC-eeEEEEe-eecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGK-ICSVSME-VEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~-I~~v~i~-~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+.++|||+| +++++++|+++|++||. |..|.|+ .++..|. ++|||||+|.+.++|..|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~---------------~~g~afV~f~~~~~A~~A~~ 70 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMK---------------NRGFAFVEYESHRAAAMARR 70 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTT---------------TCCEEEEEESSHHHHHHHHT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCC---------------cCcEEEEEecCHHHHHHHHH
Confidence 4568999999 89999999999999998 9999988 6777665 89999999999999999999
Q ss_pred HhC--CcEECCeEEEEEEccccccc
Q psy15187 219 EVN--GTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 219 ~ln--G~~i~Gr~L~V~~A~~k~~~ 241 (298)
.|| +..|+|+.|+|.||.++...
T Consensus 71 ~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 71 KLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp TTTTCCSCBTTBCCEEEESCSSCST
T ss_pred HhhCCCceecCCeEEEEEcCCCCCc
Confidence 996 59999999999999986653
No 72
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-17 Score=127.10 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=75.0
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.++.++..|. ++|||||+|.+.++|.+||..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~---------------~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGM---------------PTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSC---------------EEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCC---------------eeeEEEEEECCHHHHHHHHHH
Confidence 34558999999 9999999999999999999888888877775 789999999999999999999
Q ss_pred hCCcEECCeEEEEEEcccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k 238 (298)
|||..|+|+.|+|.++..+
T Consensus 77 l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 77 LNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp TTTCEETTEECEEEESSCS
T ss_pred hCCCeeCCeEEEEEEcCCC
Confidence 9999999999999999864
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=2.4e-17 Score=135.29 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+.++++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~---------------~~G~afV~F~~~~~A~~Ai~ 106 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR---------------SRGFAFVYFENVDDAKEAKE 106 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSC---------------CCCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc---------------cceEEEEEECCHHHHHHHHH
Confidence 345568999999 9999999999999999999999999887775 89999999999999999999
Q ss_pred HhCCcEECCeEEEEEEccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
.|||..|+|+.|+|.|+.++.
T Consensus 107 ~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 107 RANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp HHTTCCSSSSCCEESCCSSSS
T ss_pred HhCCCEECCEEEEEEEecCCC
Confidence 999999999999999998754
No 74
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=128.34 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcC--CCC------CHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHH
Q psy15187 141 KPKGGNTIFVQG--AGI------SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~------te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~ 212 (298)
....+++|||+| +.+ ++++|+++|++||.|..|.|+ +..|. ++|||||+|.+.++
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~---------------~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGK---------------TKGYIFLEYASPAH 73 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTB---------------SCCEEEEEECSSSH
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCC---------------eeeEEEEEECCHHH
Confidence 344568999999 777 789999999999999999887 34454 88999999999999
Q ss_pred HHHHHHHhCCcEECCe-EEEEEEccccc
Q psy15187 213 SDKAITEVNGTHVQGV-KLKVSLARRQL 239 (298)
Q Consensus 213 A~~Ai~~lnG~~i~Gr-~L~V~~A~~k~ 239 (298)
|..||..|||..|+|+ .|+|.++....
T Consensus 74 A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 74 AVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp HHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred HHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 9999999999999998 99999998643
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=130.26 Aligned_cols=82 Identities=24% Similarity=0.389 Sum_probs=76.3
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|+..|||.
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~---------------~~g~afV~f~~~~~a~~A~~~l~g~ 73 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK---------------PKGYGFCEYQDQETALSAMRNLNGR 73 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTE---------------EEEEEEEECSCHHHHHHHHHHSSSB
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCc---------------cceEEEEEECCHHHHHHHHHHhCCC
Confidence 6899999 9999999999999999999999999987776 8899999999999999999999999
Q ss_pred EECCeEEEEEEcccccccc
Q psy15187 224 HVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k~~~~ 242 (298)
.|+|+.|+|.|+.++....
T Consensus 74 ~~~g~~l~v~~a~~~~~~~ 92 (104)
T 1p1t_A 74 EFSGRALRVDNAASEKNKE 92 (104)
T ss_dssp SCSSSCBEEEETTCTTHHH
T ss_pred eeCCcEEEEEeCCCccchh
Confidence 9999999999999865543
No 76
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=5.4e-17 Score=139.04 Aligned_cols=97 Identities=25% Similarity=0.364 Sum_probs=88.1
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhcc----C-------CeeEEEEeeecCceeEEecChhhhhhhh--------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIF----G-------KICSVSMEVEKGRGFVTFDSPESSDKAI-------------- 196 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~f----G-------~I~~v~i~~dk~~gfV~f~~~~~adkai-------------- 196 (298)
..++|||+| +++++++|+++|++| | .|.++.+..++++|||+|.+.++|++||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEE
Confidence 357999999 999999999999999 6 7888888888999999999999999997
Q ss_pred ----------------------------------------------------------------------hcCCceEEEE
Q psy15187 197 ----------------------------------------------------------------------TDDCARGFVT 206 (298)
Q Consensus 197 ----------------------------------------------------------------------~~skGfaFV~ 206 (298)
+.++|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~ 162 (198)
T 2yh0_A 83 RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 162 (198)
T ss_dssp ECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred eCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEE
Confidence 0148999999
Q ss_pred eCCHHHHHHHHHHhCCcEECCeEEEEEEcccccc
Q psy15187 207 FDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 207 F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|.+.++|..|+..|||..|+|+.|.|.|+.++..
T Consensus 163 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 163 YVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp ESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999999987644
No 77
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=123.24 Aligned_cols=84 Identities=40% Similarity=0.684 Sum_probs=73.3
Q ss_pred CCCCCCCCcEEEEcCCCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 138 PNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 138 ~~~~~~~~~tLfVgn~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
....+..+++|||+|.++++++|+++|++||.|..|.|. .++|||||+|.+.++|..||
T Consensus 8 ~~~~~~~~~~l~V~n~~~t~~~l~~~F~~~G~i~~v~i~---------------------~~~g~afV~f~~~~~a~~Ai 66 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMD---------------------PPRNCAFVTYEKMESADQAV 66 (97)
T ss_dssp CCCCCCCCSEEEEECSSCCHHHHHHHHTTTSCEEEEEEE---------------------TTTTEEEEEESSHHHHHHHH
T ss_pred ccCCCCCCCEEEEcCCCCCHHHHHHHHhhCCCEEEEEec---------------------CCCCEEEEEECCHHHHHHHH
Confidence 344456778999999999999999999999999999873 25667999999999999999
Q ss_pred HHhCCcEECCeEEEEEEcccccccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
..|||..|+|+.|+|.|+.+++...
T Consensus 67 ~~l~g~~~~g~~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 67 AELNGTQVESVQLKVNIARKQPMLD 91 (97)
T ss_dssp HHTTTEEETTEEEEEECCSSCCCCC
T ss_pred HHhCCCeECCeEEEEEECCCCCCCC
Confidence 9999999999999999999876543
No 78
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=5.7e-17 Score=135.83 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=77.0
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||..|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~---------------~~g~afV~f~~~~~a~~A~~~l 132 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE---------------SRGFAFVRFHDKRDAEDAMDAM 132 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTT---------------SCCEEEEEESBHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCc---------------cceEEEEEECCHHHHHHHHHHh
Confidence 4457999999 9999999999999999999999999887775 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.|+.++..
T Consensus 133 ~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 133 DGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TTEESSSSEEEEEEECCSSC
T ss_pred CCCEECCeEEEEEECCCCCC
Confidence 99999999999999997644
No 79
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=9.1e-17 Score=129.82 Aligned_cols=84 Identities=19% Similarity=0.393 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
....+++|||+| +++++++|+++|++||.|..|.|+.++ .|. ++|||||+|.+.++|..|+.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~---------------~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGR---------------SLGTADVHFERRADALKAMK 94 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSS---------------CCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCC---------------EeeEEEEEECCHHHHHHHHH
Confidence 345668999999 999999999999999999999999887 665 88999999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..|+|+.|+|.||.....
T Consensus 95 ~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 95 QYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHTTEESSSCEEEEEEECCTTC
T ss_pred HcCCCEECCcEEEEEEeCCCCC
Confidence 9999999999999999987554
No 80
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=130.66 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=72.1
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec-CceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK-GRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk-~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~ 215 (298)
.......++|||+| +++++++|+++|++|| |.+|.|+.++ ..|. ++|||||+|.+.++|..
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~---------------~~g~afV~f~~~~~a~~ 76 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPER---------------LKGFGYAEFEDLDSLLS 76 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCC---------------CCSCEEEEECCHHHHHH
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCc---------------cCeEEEEEECCHHHHHH
Confidence 34456668999999 9999999999999999 9999999887 4665 89999999999999999
Q ss_pred HHHHhCCcEECCeEEEEEEccccc
Q psy15187 216 AITEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 216 Ai~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|| .|||..|+|+.|+|.++.++.
T Consensus 77 Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 77 AL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp HH-HTTTCCBTTBCCCCEECCCSC
T ss_pred HH-hcCCCEECCeEEEEEeccCCC
Confidence 99 899999999999999998754
No 81
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=130.73 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=74.3
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|| .|||.
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR---------------SKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSS---------------CCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCc---------------cCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 7999999 9999999999999999999999999887775 8999999999999999999 99999
Q ss_pred EECCeEEEEEEcccccc
Q psy15187 224 HVQGVKLKVSLARRQLK 240 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k~~ 240 (298)
.|+|+.|+|.|+.++..
T Consensus 90 ~~~g~~l~V~~a~~~~~ 106 (114)
T 2cq4_A 90 RLLGVPIIVQASQAEKN 106 (114)
T ss_dssp EETTEEEEEEEHHHHHH
T ss_pred EeCCeEEEEEecCCCcc
Confidence 99999999999987654
No 82
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=125.20 Aligned_cols=80 Identities=21% Similarity=0.429 Sum_probs=71.6
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.+.. ++|||||+|.+.++|..||..|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~------------------~~g~afV~f~~~~~A~~A~~~l 81 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG------------------GPPFAFVEFEDPRDAEDAVYGR 81 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS------------------SSCCEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC------------------CCcEEEEEECCHHHHHHHHHHc
Confidence 4558999999 9999999999999999999998865421 5778999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.|+.++..
T Consensus 82 ~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 82 DGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp TTCEETTEECEEECCCCCCC
T ss_pred CCCEECCeEEEEEEcccCCC
Confidence 99999999999999987654
No 83
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=124.23 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.....++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH---------------SKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCS---------------EEEEEEEEESSHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCC---------------ccceEEEEECCHHHHHHHHH
Confidence 334567999999 9999999999999999999999999987775 88999999999999999998
Q ss_pred HhCCcEECCeEEEEEEccccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
+++.|+|+.|.|.|+.++...
T Consensus 76 --~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 76 --QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp --SCEEETTEEEEEECCCTTCCC
T ss_pred --cCCeeCCeEEEEEecCCCCcC
Confidence 588999999999999987653
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8e-17 Score=127.87 Aligned_cols=82 Identities=30% Similarity=0.471 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.....++|||+| .++++++|+++|++||.|..|.|+.+++ + ++|||||+|.+.++|..|+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~----------------~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-G----------------SKGFGFVTFENSADADRARE 87 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-B----------------CTTEEEEECCCSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-C----------------CceEEEEEECCHHHHHHHHH
Confidence 344568999999 9999999999999999999999988753 1 57889999999999999999
Q ss_pred HhCCcEECCeEEEEEEccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
.|||..|+|+.|+|.++.++.
T Consensus 88 ~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 88 KLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp HHTTCEETTEECEEEECCCSC
T ss_pred HcCCCEECCEEEEEEECCCCc
Confidence 999999999999999998753
No 85
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=8.7e-17 Score=124.32 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
.+.-|||+| +.+||++|+++|.+||+|.+|.+.. ++|||||+|.+.++|..|++.||
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------------------~kGfaFVey~~~~eA~~Ai~~Ln 64 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------------------NQGIALCKYTTREEANKAQMALN 64 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------------------TTTEEEEEESSHHHHHHHHHHHT
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------------------CCcEEEEEECCHHHHHHHHHHhc
Confidence 346899999 9999999999999999999998753 57779999999999999999999
Q ss_pred CcEECCeEEEEEEcc
Q psy15187 222 GTHVQGVKLKVSLAR 236 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~ 236 (298)
|..++|++|+|.+|.
T Consensus 65 ~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 65 NCVLANTTIFAESPS 79 (89)
T ss_dssp TEEETTEEEEEECCC
T ss_pred CCEECCcEEEEEECC
Confidence 999999999999994
No 86
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=1.2e-16 Score=145.89 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=87.2
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee----cCceeEEecChhhhhhhh-----------------
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPESSDKAI----------------- 196 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d----k~~gfV~f~~~~~adkai----------------- 196 (298)
...+.+++|||+| +++|+++|+++|+.||+|.+|.|+.+ +++|||+|.+.++|++|+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 3456678999999 99999999999999999999999985 789999999999999998
Q ss_pred --------------------------h--------------cCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcc
Q psy15187 197 --------------------------T--------------DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 197 --------------------------~--------------~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~ 236 (298)
| .++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 2 268999999999999999999999999999999999998
Q ss_pred cccc
Q psy15187 237 RQLK 240 (298)
Q Consensus 237 ~k~~ 240 (298)
++..
T Consensus 196 ~~~~ 199 (292)
T 2ghp_A 196 PLEK 199 (292)
T ss_dssp CC--
T ss_pred CCcc
Confidence 7654
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=130.40 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=71.7
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
..++|||+| +++|+++|+++|++||+|.+|.|+.++. |. ++|||||+|.+.++|..||. +|
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~---------------~rG~aFV~F~~~e~a~~Ai~-~~ 72 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KA---------------FKGSIFVVFDSIESAKKFVE-TP 72 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TS---------------CCCEEEEEESSHHHHHHHHT-SS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CC---------------CccEEEEEECCHHHHHHHHH-cC
Confidence 347899999 9999999999999999999999998876 65 89999999999999999999 99
Q ss_pred CcEECCeEEEEEEccc
Q psy15187 222 GTHVQGVKLKVSLARR 237 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~ 237 (298)
|..|+|+.|.|.|+..
T Consensus 73 ~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 73 GQKYKETDLLILFKDD 88 (103)
T ss_dssp CCCCTTTTCEEEEHHH
T ss_pred CCEECCEEEEEEEchH
Confidence 9999999999999765
No 88
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=129.52 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+..+++|||+| +++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..||.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---------------------kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------------------KNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---------------------CCEEEEEECCHHHHHHHHH
Confidence 345678999999 99999999999999999999998865 3458888888889999999
Q ss_pred HhC--CcEECCeEEEEEEccccccc
Q psy15187 219 EVN--GTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 219 ~ln--G~~i~Gr~L~V~~A~~k~~~ 241 (298)
.|+ |..|+|++|+|.||.++...
T Consensus 71 ~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 71 YYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HHTTSCCEETTEECCBCCCSSSSCC
T ss_pred HhccCCceECCEEEEEEEcCCCCCC
Confidence 986 47999999999999876553
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.2e-18 Score=126.83 Aligned_cols=79 Identities=29% Similarity=0.442 Sum_probs=72.9
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
.++++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|+..|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~~~l 67 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNK---------------CKGYGFVDFDSPSAAQKAVTAL 67 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCS---------------CCSEEEEEESCHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC---------------cCcEEEEEECCHHHHHHHHHHh
Confidence 4568999999 9999999999999999999999999877775 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcc
Q psy15187 221 NGTHVQGVKLKVSLAR 236 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~ 236 (298)
||..|+|+.|+|.+++
T Consensus 68 ~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 68 KASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHTCCEESCCSSCCC
T ss_pred cCCeEeeEEEeecCCC
Confidence 9999999999887654
No 90
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=9.8e-17 Score=129.31 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=73.9
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
.++|||+| +++++++|+++|++||.|.+|.|+.++..|. ++|||||+|.+.++|..|| .|||
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~-~l~g 99 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGH---------------PKGYAYIEFAERNSVDAAV-AMDE 99 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSS---------------CEEEEEEEESSHHHHHHHH-TTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC---------------cccEEEEEECCHHHHHHHH-hcCC
Confidence 37999999 9999999999999999999999999877775 8899999999999999999 8999
Q ss_pred cEECCeEEEEEEcccccc
Q psy15187 223 THVQGVKLKVSLARRQLK 240 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~k~~ 240 (298)
..|+|+.|+|.|++....
T Consensus 100 ~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 100 TVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp CEETTEECEEEESSCCCS
T ss_pred CeECCeEEEEEECCCCCC
Confidence 999999999999986443
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=9.8e-17 Score=136.22 Aligned_cols=83 Identities=18% Similarity=0.379 Sum_probs=76.2
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+++|||+| +.+++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||..|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~A~~Ai~~l 134 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF---------------SKGYALVEYETHKQALAAKEAL 134 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS---------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCc---------------EeeEEEEEECCHHHHHHHHHHh
Confidence 4457999999 9999999999999999999999999987776 8899999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|.|.|+.++..
T Consensus 135 ~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 135 NGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp TTCEETTEECEEEESEECC-
T ss_pred CCCEECCEEEEEEEecCCCC
Confidence 99999999999999987655
No 92
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=6.4e-17 Score=123.46 Aligned_cols=81 Identities=26% Similarity=0.484 Sum_probs=72.7
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+++|||+| +++++++|+++|++||.|..|.|+.+ .|. ++|||||+|.+.++|..|+..|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~---------------~~g~afV~f~~~~~a~~a~~~l 68 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGK---------------SKGCGVVKFESPEVAERACRMM 68 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSC---------------EEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCC---------------cceEEEEEECCHHHHHHHHHHh
Confidence 4558999999 99999999999999999999999874 333 6788999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|+|.|+++...
T Consensus 69 ~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 69 NGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp TTCCBTTBCCCCEECSCCSS
T ss_pred CCCEECCcEEEEEEcCCCCC
Confidence 99999999999999987544
No 93
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2.9e-17 Score=126.10 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=72.2
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.++.++..|. ++|||||+|.+.++|.+||..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~---------------~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGM---------------PTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSC---------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCC---------------EeeEEEEEECCHHHHHHHHHH
Confidence 34458999999 9999999999999999999998888877765 789999999999999999999
Q ss_pred hCCcEECCeEEEEEEccc
Q psy15187 220 VNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~ 237 (298)
|||..|+|+.|+|.++..
T Consensus 77 l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp HTTCEETTEECEEECCC-
T ss_pred hCCCeECCcEEEEEeccC
Confidence 999999999999998763
No 94
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=127.90 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=75.3
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
.++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||.. ||
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~---------------~~g~afV~f~~~~~a~~Ai~~-~~ 90 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR---------------SRGFGFVTFSSMAEVDAAMAA-RP 90 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSS---------------CCSEEEEECSSHHHHHHHHTS-CS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC---------------cCceEEEEeCCHHHHHHHHHh-CC
Confidence 37999999 9999999999999999999999999887775 899999999999999999998 99
Q ss_pred cEECCeEEEEEEccccccc
Q psy15187 223 THVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~k~~~ 241 (298)
..|+|+.|+|.++.++...
T Consensus 91 ~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 91 HSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp EEETTEEEEEECCSSCCCC
T ss_pred cEECCEEEEEEECCCCccC
Confidence 9999999999999987653
No 95
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=121.18 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=73.4
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
+...++|||+| +++++++|+++|+.| .|..|.|+.+ ..|. ++|||||+|.+.++|..||.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~---------------~~g~afV~f~~~~~a~~A~~- 68 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGN---------------KTGYIFVDFSNEEEVKQALK- 68 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSC---------------EEEEEEEECSSHHHHHHHHH-
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCC---------------CceEEEEEECCHHHHHHHHH-
Confidence 34568999999 999999999999999 9999999988 5554 78899999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|.|.++.+++.
T Consensus 69 ~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 69 CNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp SCSEEETTEEEEEEEESSCCC
T ss_pred hCCceeCCcEEEEEECCcCCC
Confidence 999999999999999987644
No 96
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.68 E-value=9.3e-17 Score=145.51 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=89.6
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhh----------------------
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI---------------------- 196 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai---------------------- 196 (298)
.....++|||+| +++|+++|+++|+.||.|..|.|..++++|||+|.+.++|++|+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 97 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA 97 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC
Confidence 345568999999 99999999999999999999999999999999999999999998
Q ss_pred ------------------------------------hcCCceEEEEeCCHHHHHHHHHHh-CCcEEC---CeEEEEEEcc
Q psy15187 197 ------------------------------------TDDCARGFVTFDSPESSDKAITEV-NGTHVQ---GVKLKVSLAR 236 (298)
Q Consensus 197 ------------------------------------~~skGfaFV~F~~~e~A~~Ai~~l-nG~~i~---Gr~L~V~~A~ 236 (298)
+.++|||||+|.+.++|..||..| +|..+. |++|.|.++.
T Consensus 98 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 98 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence 226999999999999999999999 555655 9999999998
Q ss_pred cccc
Q psy15187 237 RQLK 240 (298)
Q Consensus 237 ~k~~ 240 (298)
....
T Consensus 178 ~~~~ 181 (261)
T 3sde_A 178 QFDD 181 (261)
T ss_dssp CEES
T ss_pred ccCc
Confidence 7543
No 97
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=1.9e-16 Score=144.01 Aligned_cols=96 Identities=19% Similarity=0.285 Sum_probs=88.7
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhh-------------------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI------------------------- 196 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai------------------------- 196 (298)
..++|||+| +++|+++|+++|+.|| |.+|.+...+++|||+|.+.++|++|+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~ 99 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLC 99 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEE
Confidence 447999999 9999999999999999 999999878999999999999999999
Q ss_pred ----------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcccccc
Q psy15187 197 ----------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 197 ----------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
+.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.+...
T Consensus 100 v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 100 VANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred EcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 22689999999999999999999999999999999999987543
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=126.97 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcC--C-CCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--A-GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 141 ~~~~~~tLfVgn--~-~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
...++++|||+| + ++++++|+++|++||.|.+|.|+.++ |||||+|.+.++|..||
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k---------------------g~aFVef~~~~~A~~Ai 69 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---------------------NEAFIEMATTEDAQAAV 69 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS---------------------SCEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC---------------------CEEEEEECCHHHHHHHH
Confidence 345678999999 8 99999999999999999999998654 34778888888999999
Q ss_pred HHhCCc--EECCeEEEEEEcccccc
Q psy15187 218 TEVNGT--HVQGVKLKVSLARRQLK 240 (298)
Q Consensus 218 ~~lnG~--~i~Gr~L~V~~A~~k~~ 240 (298)
..|||. .|.|++|+|.||.....
T Consensus 70 ~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 70 DYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp HHHHHSCCEETTEECEEEEECCCTT
T ss_pred HHHcCCCceECCcEEEEEECCCCCC
Confidence 999864 59999999999996544
No 99
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=129.19 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=72.4
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|.+|+..|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~A~~~l 125 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK---------------HRGFAFVEFELAEDAAAAIDNM 125 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCC---------------CCSEEEEEESCHHHHHHHHHHS
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCC---------------cCcEEEEEECCHHHHHHHHHHh
Confidence 3458999999 8999999999999999999999999877775 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEc
Q psy15187 221 NGTHVQGVKLKVSLA 235 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A 235 (298)
||..|+|+.|+|.||
T Consensus 126 ~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 126 NESELFGRTIRVNLA 140 (140)
T ss_dssp TEEEETTEEEEEEC-
T ss_pred CCCEECCEEEEEEeC
Confidence 999999999999986
No 100
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=3.7e-16 Score=121.63 Aligned_cols=77 Identities=26% Similarity=0.407 Sum_probs=67.5
Q ss_pred CCCCCCCcEEEEcC--C-CCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--A-GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~-~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~ 215 (298)
......+++|||+| + ++++++|+++|++||.|..|.|. +|||||+|.+.++|..
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------------------~g~afV~f~~~~~A~~ 72 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------------------NAFGFIQFDNPQSVRD 72 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------------------SSEEEEEESSHHHHHH
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------------------CCEEEEEECCHHHHHH
Confidence 34456678999999 6 89999999999999999999872 4569999999999999
Q ss_pred HHHHhCCcEECCeEEEEEEcccc
Q psy15187 216 AITEVNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 216 Ai~~lnG~~i~Gr~L~V~~A~~k 238 (298)
|+..|||..|+|+.|+|.|++.+
T Consensus 73 Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 73 AIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp HHHHHTTSEETTEECEEEECCCC
T ss_pred HHHHcCCCEECCEEEEEEecCCC
Confidence 99999999999999999999864
No 101
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.5e-16 Score=123.04 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=69.9
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
+...++|||+| +++++++|+++|++||.|..|.|+.+ || |||+|.+.++|..||..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~-------------------afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GT-------------------GVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TE-------------------EEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CE-------------------EEEEECCHHHHHHHHHH
Confidence 34568999999 99999999999999999999999876 44 89999999999999999
Q ss_pred hCCcEECC-----eEEEEEEcccccc
Q psy15187 220 VNGTHVQG-----VKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~G-----r~L~V~~A~~k~~ 240 (298)
|||..|+| +.|+|.+|.++..
T Consensus 70 l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 70 LDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp SSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred HCcCCccCCcCcceEEEEEeCCCCCC
Confidence 99999999 9999999998654
No 102
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2e-17 Score=126.01 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=70.7
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|||+| .++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.+ |..|+..|||.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~-a~~a~~~l~g~ 65 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKK---------------PKGFGFVEMQEES-VSEAIAKLDNT 65 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCC---------------CCEEEEEEECTTH-HHHHHHTSCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCC---------------cceEEEEEECCHH-HHHHHHHhCCC
Confidence 5899999 9999999999999999999999999887775 8999999999999 99999999999
Q ss_pred EECCeEEEEEEcccccc
Q psy15187 224 HVQGVKLKVSLARRQLK 240 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k~~ 240 (298)
.|+|+.|+|.+|.+...
T Consensus 66 ~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 66 DFMGRTIRVTEANPKKS 82 (90)
T ss_dssp CCSSSSCSEEEC-----
T ss_pred EECCeEEEEEEcCCCCC
Confidence 99999999999987554
No 103
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=3.9e-17 Score=120.24 Aligned_cols=73 Identities=25% Similarity=0.371 Sum_probs=68.4
Q ss_pred EEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcE
Q psy15187 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTH 224 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~ 224 (298)
+|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|+. |||..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~a~~-~~~~~ 64 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNR---------------HRGFGFVTFESEDIVEKVCE-IHFHE 64 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTT---------------SCBEEEEECSCHHHHHHHHS-SSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC---------------cCcEEEEEECCHHHHHHHHH-CCCCE
Confidence 499999 9999999999999999999999998877675 89999999999999999997 99999
Q ss_pred ECCeEEEEEEc
Q psy15187 225 VQGVKLKVSLA 235 (298)
Q Consensus 225 i~Gr~L~V~~A 235 (298)
|+|+.|.|.+|
T Consensus 65 ~~g~~l~v~~A 75 (75)
T 2mss_A 65 INNKMVECKKA 75 (75)
T ss_dssp SSSCCCEEECC
T ss_pred ECCEEEEEEeC
Confidence 99999999886
No 104
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=3.4e-16 Score=142.33 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=89.7
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhh-------------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAI------------------- 196 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai------------------- 196 (298)
.+++|||+| +++++++|+++|+.||.|..|.|+.+ +++|||+|.+.++|++|+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 347999999 99999999999999999999999876 468999999999999999
Q ss_pred -------------------------------------------------hcCCceEEEEeCCHHHHHHHHHHhCCcEECC
Q psy15187 197 -------------------------------------------------TDDCARGFVTFDSPESSDKAITEVNGTHVQG 227 (298)
Q Consensus 197 -------------------------------------------------~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~G 227 (298)
+.++|||||+|.+.++|..|+..|||..|+|
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 1258999999999999999999999999999
Q ss_pred eEEEEEEccccccc
Q psy15187 228 VKLKVSLARRQLKV 241 (298)
Q Consensus 228 r~L~V~~A~~k~~~ 241 (298)
+.|+|.|+.++...
T Consensus 254 ~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 254 SHLRVSFCAPGPPG 267 (284)
T ss_dssp EECEEEECCSSSCH
T ss_pred eEEEEEEecCCCcc
Confidence 99999999886653
No 105
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-17 Score=127.64 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+...++|||+| +++++++|+++|++||.|.. .++.+...|. ++|||||+|.+.++|..||.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~---------------~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGT---------------NRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEET---------------TTTEEEEEESSHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCC---------------cCcEEEEEECCHHHHHHHHh
Confidence 344568999999 99999999999999999988 6666666664 89999999999999999998
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.++.++..
T Consensus 77 -l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 77 -LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp -GGGCCBTTBCCEEECCSCCCC
T ss_pred -cCCcEECCcEEEEEEcCCCCC
Confidence 999999999999999987654
No 106
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=5.8e-17 Score=133.86 Aligned_cols=84 Identities=21% Similarity=0.358 Sum_probs=77.2
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..||..
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~---------------~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE---------------SRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSS---------------CCSCCEEECSCHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc---------------cceEEEEEECCHHHHHHHHHH
Confidence 34567999999 8999999999999999999999998877775 899999999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|++++..
T Consensus 109 l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 109 MDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp TTTCCSSSSCCEEEECCCCCC
T ss_pred cCCCEECCEEEEEEECCCCCC
Confidence 999999999999999997654
No 107
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.2e-16 Score=140.26 Aligned_cols=97 Identities=16% Similarity=0.339 Sum_probs=89.0
Q ss_pred CCCCcEEEEcC--C-CCCHHHHHHHHhccCCeeEEEEeee-cCceeEEecChhhhhhhhh--------------------
Q psy15187 142 PKGGNTIFVQG--A-GISEEFLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAIT-------------------- 197 (298)
Q Consensus 142 ~~~~~tLfVgn--~-~~te~~L~~~F~~fG~I~~v~i~~d-k~~gfV~f~~~~~adkai~-------------------- 197 (298)
..++++|||+| + ++++++|+++|++||.|.+|.|+.+ +++|||+|.+.++|++|+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35668999999 6 8999999999999999999999988 5999999999999999880
Q ss_pred ----------------------------------------c------------------------------------CCc
Q psy15187 198 ----------------------------------------D------------------------------------DCA 201 (298)
Q Consensus 198 ----------------------------------------~------------------------------------skG 201 (298)
. ++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 0 578
Q ss_pred eEEEEeCCHHHHHHHHHHhCCcEEC-CeEEEEEEcccc
Q psy15187 202 RGFVTFDSPESSDKAITEVNGTHVQ-GVKLKVSLARRQ 238 (298)
Q Consensus 202 faFV~F~~~e~A~~Ai~~lnG~~i~-Gr~L~V~~A~~k 238 (298)
||||+|.+.++|.+|+..|||..|+ |+.|+|.|++++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999864
No 108
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=125.29 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=68.7
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
...++++|||+| +++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..|+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---------------------kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---------------------KRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---------------------CCEEEEEECCHHHHHHHHH
Confidence 345568999999 99999999999999999999988753 3458888888889999999
Q ss_pred HhCCc--EECCeEEEEEEcccccccc
Q psy15187 219 EVNGT--HVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 219 ~lnG~--~i~Gr~L~V~~A~~k~~~~ 242 (298)
.|||. .|+|++|+|.|+..+....
T Consensus 70 ~l~~~~~~i~Gr~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 70 FAADVPVYIAGQQAFFNYSTSKRITR 95 (104)
T ss_dssp HHHHSCCBSSSSBCEEEECSSSSCCC
T ss_pred HhccCCceECCEEEEEEEccCccccC
Confidence 98764 5899999999999765543
No 109
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=127.40 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCe-eEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKI-CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I-~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
..+.+.++|||+| +++++++|+++|+.||.| ..|.|+.++ .|. ++|||||+|.+.++|..|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~---------------~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQ---------------GLGQALVQFKNEDDARKS 73 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSS---------------CSSCEEEECSSHHHHHHH
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCC---------------cceEEEEEECCHHHHHHH
Confidence 3445668999999 999999999999999999 889999887 665 899999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|.. ||..|+|+.|.|.++.++..
T Consensus 74 l~~-~~~~~~gr~i~v~~a~~~~~ 96 (114)
T 2cpy_A 74 ERL-HRKKLNGREAFVHVVTLEDM 96 (114)
T ss_dssp GGG-CSEEETTEEEEEEEECHHHH
T ss_pred HHh-CCCccCCeEEEEEECCHHHH
Confidence 987 99999999999999987654
No 110
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=2.2e-16 Score=121.58 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=71.3
Q ss_pred CCCcEEEEcC--CCCCHHHHH----HHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLR----QHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~----~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.++++|||+| +++++++|+ ++|++||.|..|.|+. .| .++|||||+|.+.++|..|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~---------------~~~g~afV~f~~~~~A~~A 67 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SL---------------KMRGQAFVIFKEVSSATNA 67 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HH---------------HHTTCEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CC---------------CcCcEEEEEeCCHHHHHHH
Confidence 4568999999 999999999 9999999999998763 22 2678899999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
+..|||..|+|+.|+|.|+.++..
T Consensus 68 ~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 68 LRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHHHTTCEETTEECEEEECSSCCT
T ss_pred HHHhCCCEECCcEEEEEEccCCCc
Confidence 999999999999999999997654
No 111
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=2.9e-16 Score=126.19 Aligned_cols=81 Identities=17% Similarity=0.123 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccC-CeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFG-KICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG-~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
.+..+++|||+| +++++++|+++|++|| .|..|.|+.++ ++|||||+|.+.++|.+||
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~-------------------~rGfaFV~F~~~e~A~~Ai 84 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD-------------------FDGTGALEFPSEEILVEAL 84 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS-------------------SSCCEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC-------------------CCCEEEEEECCHHHHHHHH
Confidence 455678999999 9999999999999999 89999876432 5667999999999999999
Q ss_pred HHhCCcEECCeEEEEEEcccccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
..|||..|+|+.|+|.++...+.
T Consensus 85 ~~lng~~l~Gr~i~V~~a~~~p~ 107 (111)
T 2jvr_A 85 ERLNNIEFRGSVITVERDDNPPP 107 (111)
T ss_dssp HHTTTEEETTEEEEEEESCC---
T ss_pred HHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999986543
No 112
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8e-17 Score=128.01 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=71.1
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..++++|||+| +++++++|+++|++||.|..|.+..+...|. ++|||||+|.+.++|..||..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~---------------~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGR---------------MRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSS---------------SCSEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCc---------------cceEEEEEECCHHHHHHHHHH
Confidence 34568999999 9999999999999999995443322222332 678899999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
|||..|+|+.|+|.|+.++....
T Consensus 87 l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 87 VNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp STTCBCSSCBCEEEECCCCSCCC
T ss_pred hCCCEeCCcEEEEEEccCCCCCC
Confidence 99999999999999999866533
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.5e-17 Score=119.69 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=69.8
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|+..+| .
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~a~~~~~-~ 64 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR---------------SRGFGFVTFMDQAGVDKVLAQSR-H 64 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSS---------------CSSEEEECCCCTTHHHHHHHTTT-C
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCC---------------cCceEEEEEcCHHHHHHHHHhCC-C
Confidence 4799999 8999999999999999999999999877775 89999999999999999999999 9
Q ss_pred EECCeEEEEEEc
Q psy15187 224 HVQGVKLKVSLA 235 (298)
Q Consensus 224 ~i~Gr~L~V~~A 235 (298)
.++|+.|.|.+|
T Consensus 65 ~~~g~~l~v~~a 76 (77)
T 1uaw_A 65 ELDSKTIDPKVA 76 (77)
T ss_dssp CCSSCCCEEEEC
T ss_pred ccCCEEEEEEec
Confidence 999999999987
No 114
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=125.19 Aligned_cols=80 Identities=18% Similarity=0.347 Sum_probs=72.9
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.++ .|. ++|||||+|.+.++|..||..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~---------------~~g~afV~f~~~~~a~~A~~~l 86 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGT---------------SRGVGFARMESTEKCEAVIGHF 86 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSC---------------EEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCC---------------cceEEEEEECCHHHHHHHHHHh
Confidence 3458999999 899999999999999999999999987 664 7899999999999999999999
Q ss_pred CCcEE--------CCeEEEEEEcccc
Q psy15187 221 NGTHV--------QGVKLKVSLARRQ 238 (298)
Q Consensus 221 nG~~i--------~Gr~L~V~~A~~k 238 (298)
||..| .|++|.|.||.++
T Consensus 87 ~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 87 NGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp BTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCCEEcCCccccCCCCceeEEccCCC
Confidence 99999 5888999999853
No 115
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=129.57 Aligned_cols=81 Identities=16% Similarity=0.353 Sum_probs=70.4
Q ss_pred CCCCcEEEEcC--CCCCHHHHH----HHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLR----QHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~----~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~ 215 (298)
..++++|||+| +.+++++|+ ++|++||.|.+|.|.. .| .++|||||+|.+.++|..
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~---------------~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SD---------------DNSGKAYIVFATQESAQA 87 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CC---------------SSCCCEEEEESSHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CC---------------CcCCEEEEEECCHHHHHH
Confidence 34568999999 899999876 6999999999987753 22 278889999999999999
Q ss_pred HHHHhCCcEECCeEEEEEEcccccc
Q psy15187 216 AITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 216 Ai~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|||..|.|++|+|.||..+..
T Consensus 88 Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 88 FVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp HHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred HHHHHCCCEeCCCEEEEEEccCcch
Confidence 9999999999999999999997654
No 116
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7e-16 Score=121.79 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=68.2
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..++++|||+| +++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..|+..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---------------------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---------------------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---------------------CCEEEEEECCHHHHHHHHHH
Confidence 34568999999 99999999999999999999988754 34588888888899999998
Q ss_pred h--CCcEECCeEEEEEEccccccc
Q psy15187 220 V--NGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 220 l--nG~~i~Gr~L~V~~A~~k~~~ 241 (298)
| ++..|.|++|+|.|+..+...
T Consensus 71 l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 71 YSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp HHHSCCEETTEECEEEECSCSSCC
T ss_pred hccCCceECCcEEEEEEcCcccCc
Confidence 7 578899999999999976553
No 117
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=6.5e-18 Score=135.06 Aligned_cols=85 Identities=31% Similarity=0.454 Sum_probs=77.2
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeE--------EEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICS--------VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPES 212 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~--------v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~ 212 (298)
.+.++|||+| +++++++|+++|++||.|.. |.|+.++..|. ++|||||+|.+.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~---------------~~g~afV~f~~~~~ 69 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK---------------LKGEATVSFDDPPS 69 (116)
Confidence 3457999999 99999999999999999999 88888877675 89999999999999
Q ss_pred HHHHHHHhCCcEECCeEEEEEEcccccccc
Q psy15187 213 SDKAITEVNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 213 A~~Ai~~lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
|..||..|||..|+|+.|+|.|+.+++...
T Consensus 70 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 70 AKAAIDWFDGKEFSGNPIKVSFATRRADFN 99 (116)
Confidence 999999999999999999999999876644
No 118
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=3e-16 Score=124.81 Aligned_cols=81 Identities=15% Similarity=0.278 Sum_probs=72.3
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
+..+++|||+| +++++++|+++|++||.|..|.|+.+. .++|||||+|.+.++|..|+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------------------~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP------------------ETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST------------------TTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 34568999999 999999999999999999999998652 1467799999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|+.++..
T Consensus 67 l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp HTTCBSSSCBCEEEECCHHHH
T ss_pred cCCCEECCeEEEEEEecCChh
Confidence 999999999999999987544
No 119
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=116.98 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=68.5
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.|+++ ||||+|.+.++|..|+..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------------------~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----------------------YAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-----------------------EEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-----------------------EEEEEECCHHHHHHHHHH
Confidence 45568999999 99999999999999999999988632 488999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|+.++..
T Consensus 64 l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 64 LDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp HTTEEETTEEEEEEESSCCCS
T ss_pred hCCCeeCCcEEEEEEccCCCC
Confidence 999999999999999987655
No 120
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7e-16 Score=119.93 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.....++|||+| +++++++|+++|++||.| .|+.+ ..|. ++|||||+|.+.++|.+||.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~---------------~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGK---------------SKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSC---------------BCSEEEEECSSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCC---------------EeeEEEEEECCHHHHHHHHH
Confidence 345568999999 999999999999999987 34544 3443 78899999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..|+|+.|+|.|+.++..
T Consensus 72 ~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 72 SCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp HTSSEEETTEEEEEEECSSCCC
T ss_pred HhCCCEeCCeEEEEEEcCCCCC
Confidence 9999999999999999988654
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-15 Score=117.54 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=68.2
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhcc--CCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIF--GKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~f--G~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.....++|||+| +++++++|+++|++| |.|..|.++ +|||||+|.+.++|..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------------------~g~afV~f~~~~~A~~A 67 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------------------RDYAFVHFSNREDAVEA 67 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------------------SSEEEEEESSHHHHHHH
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------------------CCeEEEEeCCHHHHHHH
Confidence 345568999999 899999999999999 999988653 45699999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|..|||..|+|+.|+|.|++++..
T Consensus 68 ~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 68 MKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp HHHHSSEEETTEEEEEECCCCCCC
T ss_pred HHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999997654
No 122
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=120.58 Aligned_cols=84 Identities=24% Similarity=0.395 Sum_probs=73.0
Q ss_pred CCCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 139 ~~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.......++|||+| +++++++|+++|+.|+ .|.++.++..+. ++|||||+|.+.++|..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~---------------~~g~afV~f~~~~~A~~A 70 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGS---------------SKGFGFVDFNSEEDAKAA 70 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCS---------------EEEEEEEECSSHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCC---------------cCcEEEEEECCHHHHHHH
Confidence 34455668999999 9999999999999884 667777766664 788999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|..|||..|+|+.|+|.|+.++..
T Consensus 71 ~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 71 KEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp HHHHTTCEETTEECEEEECCCCCS
T ss_pred HHHhCCCeECCeEEEEEEecCCCC
Confidence 999999999999999999998655
No 123
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8e-16 Score=121.51 Aligned_cols=80 Identities=30% Similarity=0.533 Sum_probs=70.7
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..||..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---------------------~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---------------------KGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------------------CCEEEEEECCHHHHHHHHHH
Confidence 34568999999 99999999999999999999998865 34588888888899999999
Q ss_pred hCCcEECCeEEEEEEcccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
|||..|+|+.|+|.|+++++...
T Consensus 81 l~g~~~~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 81 VNGTTIEGHVVKCYWGKESPDMT 103 (109)
T ss_dssp HTTCEETTEECEEECCCCCCSSC
T ss_pred cCCCEECCcEEEEEecCCCCCCC
Confidence 99999999999999999876543
No 124
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=120.57 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=69.4
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|. +.++.++ ++|||||+|.+.++|..|+..
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~-------------------~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG-------------------PRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET-------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC-------------------CCcEEEEEECCHHHHHHHHHH
Confidence 34568999999 8999999999999999996 6666543 566699999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.++.++..
T Consensus 76 l~g~~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 76 LQGLRLGTDTLRVALARQQRD 96 (97)
T ss_dssp HTTCCSSSSCCEEEECCCCCC
T ss_pred hCCCEECCcEEEEEEcCCCCC
Confidence 999999999999999987643
No 125
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=122.89 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=67.5
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..++++|||+| +++|+++|+++|++||.|.+|.|+++ ||||||+|.+.++|..||..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---------------------kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---------------------KRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---------------------CCEEEEEECCHHHHHHHHHH
Confidence 34668999999 89999999999999999999988743 45588888888899999999
Q ss_pred hCCcE--ECCeEEEEEEccccc
Q psy15187 220 VNGTH--VQGVKLKVSLARRQL 239 (298)
Q Consensus 220 lnG~~--i~Gr~L~V~~A~~k~ 239 (298)
|||.. |+|++|+|+|++.+.
T Consensus 77 ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 77 AADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHSCEEETTEEEEEEECSCSC
T ss_pred hcCCCceeCCcEEEEEeccccc
Confidence 99875 789999999998754
No 126
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2.8e-16 Score=126.69 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=73.8
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCC---eeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGK---ICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~---I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
....++|||+| +++|+++|+++|+.||. |..|.|+.++. |. ++|||||+|.+.++|.+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~---------------~~G~afV~F~~~~~a~~A 77 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GR---------------QSGEAFVELESEDDVKLA 77 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SC---------------EEEEEEEEBSSHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CC---------------CCeEEEEEECCHHHHHHH
Confidence 34568999999 99999999999999999 89999998876 65 789999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|. |||..|+|+.|.|.++..+.
T Consensus 78 l~-~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 78 LK-KDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp GG-GTTEEETTEEEEEEEECHHH
T ss_pred Hh-cCCCeECCeEEEEEECCHHH
Confidence 99 99999999999999997643
No 127
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.3e-16 Score=119.14 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+.+.++|||+| +++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..|+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---------------------~g~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------------------DSFAYIQYESLDAAQAACA 71 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---------------------SCCEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---------------------CCEEEEEECCHHHHHHHHH
Confidence 345568999999 89999999999999999999988754 3458888888889999999
Q ss_pred HhCCcEEC--CeEEEEEEcccccc
Q psy15187 219 EVNGTHVQ--GVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~--Gr~L~V~~A~~k~~ 240 (298)
.|||..|+ |+.|+|.|+.+++.
T Consensus 72 ~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 72 KMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp HHTTCBCSSSSCBCEEEECCCCCC
T ss_pred HHCCCEeCCCCcEEEEEECCCCCC
Confidence 99999999 99999999998654
No 128
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=135.56 Aligned_cols=94 Identities=16% Similarity=0.333 Sum_probs=86.9
Q ss_pred CcEEEEcC--C-CCCHHHHHHHHhccCCeeEEEEeee-cCceeEEecChhhhhhhhh-----------------------
Q psy15187 145 GNTIFVQG--A-GISEEFLRQHFSIFGKICSVSMEVE-KGRGFVTFDSPESSDKAIT----------------------- 197 (298)
Q Consensus 145 ~~tLfVgn--~-~~te~~L~~~F~~fG~I~~v~i~~d-k~~gfV~f~~~~~adkai~----------------------- 197 (298)
+++|||+| + ++++++|+++|++||.|.+|.|+.+ +++|||+|.+.++|++|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 47999999 6 8999999999999999999999988 5999999999999999980
Q ss_pred -------------------------------------c------------------------------------CCceEE
Q psy15187 198 -------------------------------------D------------------------------------DCARGF 204 (298)
Q Consensus 198 -------------------------------------~------------------------------------skGfaF 204 (298)
. ++||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~af 162 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 162 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEE
Confidence 0 578999
Q ss_pred EEeCCHHHHHHHHHHhCCcEEC-CeEEEEEEcccc
Q psy15187 205 VTFDSPESSDKAITEVNGTHVQ-GVKLKVSLARRQ 238 (298)
Q Consensus 205 V~F~~~e~A~~Ai~~lnG~~i~-Gr~L~V~~A~~k 238 (298)
|+|.+.++|..|+..|||..|+ |+.|+|.|++++
T Consensus 163 V~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 163 IQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999999999999 999999999864
No 129
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-16 Score=120.56 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=70.1
Q ss_pred CCCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 140 ~~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
....+.++|||+| +++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---------------------kg~afV~f~~~~~a~~a~ 68 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---------------------KGFGFIRLETRTLAEIAK 68 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---------------------TTEEEEECSSSHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---------------------CCEEEEEECCHHHHHHHH
Confidence 3445668999999 89999999999999999999988743 455888888888999999
Q ss_pred HHhCCcEECCeEEEEEEcccccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
..|||..|+|+.|+|.|+.++..
T Consensus 69 ~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 69 VELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp HHHTTCCBTTBCCEEEESSCCSC
T ss_pred HHhCCCEeCCceEEEEEcCCCCC
Confidence 99999999999999999997654
No 130
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=115.99 Aligned_cols=73 Identities=30% Similarity=0.474 Sum_probs=65.5
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---------------------kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---------------------QQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---------------------GTEEEEEESSHHHHHHHHHTT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---------------------CCEEEEEECCHHHHHHHHHHh
Confidence 4557999999 89999999999999999999998864 455888888888999999999
Q ss_pred -CCcEECCeEEEEEEcc
Q psy15187 221 -NGTHVQGVKLKVSLAR 236 (298)
Q Consensus 221 -nG~~i~Gr~L~V~~A~ 236 (298)
||..++|+.|+|.||+
T Consensus 69 ~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 69 FNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp TTTCEETTEECCEEECC
T ss_pred cCCeeECCCEEEEEecC
Confidence 9999999999999985
No 131
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.7e-16 Score=126.16 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=68.8
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..++++|||+| +++++++|+++|++||.|.+|.|+.++ |||||+|.+.++|..||..
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k---------------------G~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK---------------------NQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG---------------------TEEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC---------------------CEEEEEECCHHHHHHHHHH
Confidence 34568999999 999999999999999999999988653 4477888888899999999
Q ss_pred hCC--cEECCeEEEEEEcccccccc
Q psy15187 220 VNG--THVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 220 lnG--~~i~Gr~L~V~~A~~k~~~~ 242 (298)
|++ ..|.|++|+|.||..+....
T Consensus 87 l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 87 YTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp HHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred hccCCceECCeEEEEEEccCCCCCc
Confidence 984 68999999999999866543
No 132
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.8e-16 Score=118.64 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=66.0
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCC-eeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGK-ICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~-I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
...++|||+| +++++++|+++|++||. |..+.+. ++|||||+|.+.++|..|+..
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------------------~~g~afV~f~~~~~A~~A~~~ 63 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------------------KSGYAFVDYPDQNWAIRAIET 63 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------------------ETTEEEECCSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 4557999999 99999999999999999 5555441 356789999999999999999
Q ss_pred hCC-cEECCeEEEEEEcccccc
Q psy15187 220 VNG-THVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG-~~i~Gr~L~V~~A~~k~~ 240 (298)
||| ..|+|+.|+|.|+.++..
T Consensus 64 l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 64 LSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp HTTTCEETTEECEEEECCCCCC
T ss_pred ccCCeeECCEEEEEEEccCccc
Confidence 999 999999999999997654
No 133
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=116.16 Aligned_cols=76 Identities=25% Similarity=0.419 Sum_probs=67.9
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
+...++|||+| +++++++|+++|++||.|..|.|+.+ ||||+|.+.++|..||..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----------------------~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-----------------------YAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-----------------------CEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-----------------------EEEEEECCHHHHHHHHHH
Confidence 45568999999 99999999999999999999988732 488888888899999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|+.++..
T Consensus 63 l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 63 LNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp HTTCEETTEECEEEESCCCCC
T ss_pred hCCCEECCcEEEEEECCCCCC
Confidence 999999999999999987644
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=1.1e-15 Score=120.91 Aligned_cols=75 Identities=17% Similarity=0.358 Sum_probs=66.7
Q ss_pred CCCcEEEEcC--CC-CCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AG-ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 143 ~~~~tLfVgn--~~-~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..+++|||+| ++ +++++|+++|++||.|..|.| ++|||||+|.+.++|..||..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----------------------~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----------------------HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----------------------ETTEEEEECSSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----------------------eCCEEEEEECCHHHHHHHHHH
Confidence 3457999999 77 999999999999999999987 256689999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|+.....
T Consensus 82 l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HTTCEETTEECCEEESCCCCS
T ss_pred cCCCEECCeEEEEEECCCCCC
Confidence 999999999999999986433
No 135
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=1.5e-16 Score=142.78 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=74.8
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccC--CeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFG--KICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG--~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..++|||+| +++|+++|+++|++|| .|.+|.|+.|+.+|. ++|||||+|.+.++|.+||..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~---------------skGfaFV~f~~~~~a~~Ai~~ 131 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ---------------SKGFALVGVGSEASSKKLMDL 131 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCC---------------EEEEEEEEESCTTHHHHHHTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCc---------------cceEEEEEECCHHHHHHHHHH
Confidence 347999999 9999999999999999 999999999988886 899999999999999999999
Q ss_pred hCCcEECCeEEEEEEccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|||+.|+|+.|+|.||.++.
T Consensus 132 lng~~~~Gr~l~V~~a~~~~ 151 (229)
T 3q2s_C 132 LPKRELHGQNPVVTPVNKQF 151 (229)
T ss_dssp STTSCBTTBCCEEEECCHHH
T ss_pred cCCCeECCEEeEEEECCCCc
Confidence 99999999999999997643
No 136
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.8e-16 Score=118.15 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEE-EEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSV-SMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v-~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..+++|||+| +++++++|+++|++||.|..| .|+.++..|. |||+|.+.++|..||..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~-------------------afV~f~~~~~a~~Ai~~ 73 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV-------------------VNVTYSSKDQARQALDK 73 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE-------------------EEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-------------------EEEEECCHHHHHHHHHH
Confidence 4468999999 999999999999999999999 5888877775 99999999999999999
Q ss_pred hCCcEECCeEEEEEEcccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k 238 (298)
|||..|+|+.|+|.++.++
T Consensus 74 l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 74 LNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HTTCBCSSCBCEEEECCCC
T ss_pred hCCCEECCcEEEEEEcCcc
Confidence 9999999999999999976
No 137
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=119.81 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=63.4
Q ss_pred CcEEEEcC--CCC------CHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 145 GNTIFVQG--AGI------SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 145 ~~tLfVgn--~~~------te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
+++|||+| +++ ++++|+++|++||.|.+|.|+ +..|. ++|||||+|.+.++|..|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~---------------~~g~afV~f~~~~~A~~A 63 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGK---------------TKGYIFLEYASPAHAVDA 63 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTB---------------CCCEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCc---------------EeEEEEEEECCHHHHHHH
Confidence 37899999 777 679999999999999999887 34444 789999999999999999
Q ss_pred HHHhCCcEECCe-EEEE
Q psy15187 217 ITEVNGTHVQGV-KLKV 232 (298)
Q Consensus 217 i~~lnG~~i~Gr-~L~V 232 (298)
+..|||..|+|+ +|+|
T Consensus 64 i~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 64 VKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HTTSSSCCCSSSSCCCC
T ss_pred HHHhcCcccCCceeEEe
Confidence 999999999999 8877
No 138
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=121.60 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=72.4
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeE-EEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICS-VSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~-v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
....++|||+| +++++++|+++|++||.|.. |.|+.+ ..|. ++|||||+|.+.++|..||.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~---------------~~G~afV~F~~~~~a~~A~~ 75 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGR---------------STGEAFVQFASQEIAEKALK 75 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSC---------------BCSEEEEEESSHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCC---------------cceEEEEEECCHHHHHHHHH
Confidence 34568999999 99999999999999999998 888877 5564 88999999999999999999
Q ss_pred HhCCcEECCeEEEEEEccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
. ||..|+|+.|.|.++..+.
T Consensus 76 ~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 76 K-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp T-TTCCSSSSCCEEEEECTTT
T ss_pred h-CcchhCCcEEEEEECCHHH
Confidence 7 9999999999999987654
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.6e-16 Score=120.48 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=68.1
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
+..+++|||+| .++++++|+++|++||.|.+|.|+. ++|||||+|.+.++|..|+..
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---------------------CCCEEEEEECCHHHHHHHHHH
Confidence 34458999999 9999999999999999999998862 456689999999999999999
Q ss_pred hCCcEECCeEEEEEEcccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k 238 (298)
|||..|+|+.|+|.|++++
T Consensus 83 l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 83 LANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp HTTCEETTEECCCCBCCCC
T ss_pred hCCCeECCeEEEEEeccCC
Confidence 9999999999999999863
No 140
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=125.44 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=70.6
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
.+++|||+| +++++++|+++|+.| .|..|.|+.++. |. ++|||||+|.+.++|.+|| .||
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~---------------~~G~afV~F~~~~~a~~Al-~~~ 76 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GR---------------NNGNGLVKFLSPQDTFEAL-KRN 76 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CC---------------CCSEEEEECSSHHHHHHHH-HTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CC---------------CCeEEEEEECCHHHHHHHH-hcC
Confidence 346999999 999999999999999 899999998876 65 8999999999999999999 799
Q ss_pred CcEECCeEEEEEEcccc
Q psy15187 222 GTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k 238 (298)
|..|+|+.|.|..+..+
T Consensus 77 ~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 77 RMLMIQRYVEVSPATER 93 (109)
T ss_dssp TEEETTEEEEEEECCHH
T ss_pred CCeECCeEEEEEECCcc
Confidence 99999999999888754
No 141
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=121.27 Aligned_cols=75 Identities=21% Similarity=0.452 Sum_probs=68.8
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|||+| +++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|..|+..|||.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--------------------~~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--------------------PPGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--------------------SSSEEEEECSSHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------------------CCCEEEEEECCHHHHHHHHHHHCCC
Confidence 5899999 89999999999999999999999876 2556999999999999999999999
Q ss_pred EECCeEEEEEEcccccc
Q psy15187 224 HVQGVKLKVSLARRQLK 240 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~k~~ 240 (298)
.|+|+.|+|.|+.+++.
T Consensus 61 ~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 61 VICGSRVRVELSTGMPR 77 (101)
T ss_dssp CSSSCCCEEEESSSCCC
T ss_pred eECCcEEEEEEccCCCC
Confidence 99999999999998664
No 142
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.9e-17 Score=130.17 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=73.1
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|+.||.|..|.++.+...|. ++|||||+|.+.++|..||. |
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~---------------~~G~afV~F~~~~~a~~Al~-~ 86 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGK---------------ATGEGFVEFRNEADYKAALC-R 86 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSS---------------EEEEEEEEBSSSHHHHHHHT-S
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCC---------------CCeEEEEEECCHHHHHHHHH-h
Confidence 4457999999 9999999999999999999876776666664 78999999999999999999 9
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|.|.++..+..
T Consensus 87 ~g~~~~gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 87 HKQYMGNRFIQVHPITKKGM 106 (124)
T ss_dssp CSBCSTTSCBEEEEECHHHH
T ss_pred CCCeECCcEEEEEECCHHHH
Confidence 99999999999999987543
No 143
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=115.94 Aligned_cols=77 Identities=21% Similarity=0.422 Sum_probs=68.9
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..+.++|||+| +++++++|+++|++||.|..|.|+ +|||||+|.+.++|..|+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------------------~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------------------KNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 34568999999 999999999999999999999886 34588999999999999999
Q ss_pred hCCcEECCeEEEEEEccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
|||..|+|+.|+|.|+.++...
T Consensus 62 l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 62 LHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp HTTCBCSSCBCEEECSSCCCCC
T ss_pred hcCCccCCcEEEEEECCCCCCC
Confidence 9999999999999999986653
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=5.5e-16 Score=129.20 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=69.8
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|..||..|
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--------------------~~g~afV~f~~~~~a~~A~~~l 130 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--------------------PPGFAFVEFEDPRDAADAVREL 130 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--------------------SCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--------------------CCcEEEEEECCHHHHHHHHHHc
Confidence 4458999999 99999999999999999999998865 3566999999999999999999
Q ss_pred CCcEECCeEEEEEEccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~ 239 (298)
||..|+|++|+|.|+.++.
T Consensus 131 ~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 131 DGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SSSCSSSSCCEEEECCCCC
T ss_pred CCCEECCeEEEEEEcCCCC
Confidence 9999999999999998753
No 145
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=3.2e-15 Score=116.85 Aligned_cols=77 Identities=27% Similarity=0.472 Sum_probs=68.3
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+ +|||||+|.+.++|.+||..|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----------------------~~~afV~f~~~~~a~~A~~~l 65 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----------------------KDYAFIHFDERDGAVKAMEEM 65 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----------------------SSCEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----------------------CCEEEEEeCCHHHHHHHHHHH
Confidence 4458999999 899999999999999999999875 234888888888999999999
Q ss_pred CCcEECCeEEEEEEcccccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
||..|+|+.|+|.|+.++....
T Consensus 66 ~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 66 NGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp TTEEETTEEEEEEECCCCCCCC
T ss_pred CCCccCCCEEEEEEcCCCcccc
Confidence 9999999999999998866543
No 146
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=2.9e-16 Score=130.54 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=73.9
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCC---eeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGK---ICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~---I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
+..+++|||+| +++|+++|+++|++||. |..|.|+.++. |. ++|||||+|.+.++|.+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~---------------srG~aFV~F~~~e~a~~A 104 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GR---------------QSGEAFVELGSEDDVKMA 104 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SC---------------EEEEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CC---------------CCeEEEEEECCHHHHHHH
Confidence 34568999999 99999999999999999 89999999877 75 889999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|. |||..|+|+.|.|.++.++.
T Consensus 105 l~-~~g~~l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 105 LK-KDRESMGHRYIEVFKSHRTE 126 (136)
T ss_dssp HT-TTEEESSSSEEEEEECCHHH
T ss_pred Hh-cCCCEECCEEEEEEECChHH
Confidence 99 99999999999999987643
No 147
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-16 Score=123.69 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+...++|||+| +++|+++|+++|++||. +.|.|+.++ .|. ++|||||+|.+.++|.+||
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~---------------~~G~afV~F~~~~~a~~Al- 72 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGR---------------VTGEADVEFATHEDAVAAM- 72 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSC---------------EEEEEEEECSSSHHHHHHH-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCC---------------EeeEEEEEECCHHHHHHHH-
Confidence 345568999999 99999999999999995 599999887 665 8899999999999999999
Q ss_pred HhCCcEECCeEEEEEEccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
.+|+..|+|+.|.|.++....
T Consensus 73 ~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 73 AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp TTSSCCSSSSCCEEEEECCCC
T ss_pred HhCCCeECCcEEEEEECCCCC
Confidence 589999999999999988644
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=2.7e-16 Score=122.49 Aligned_cols=80 Identities=28% Similarity=0.460 Sum_probs=72.0
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
..++|||+| +++++++|+++|++||.|..|.|+.++ .|. ++|||||+|.+.++|..|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~---------------~~g~afV~f~~~~~a~~Ai~--~ 69 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGV---------------SKGYGFVSFYNDVDVQKIVE--S 69 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSC---------------EEEEEEEEESSCCCHHHHTT--C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCC---------------ccceEEEEECCHHHHHHHHh--C
Confidence 347999999 899999999999999999999999987 664 78999999999999999998 9
Q ss_pred CcEECCeEEEEEEccccccc
Q psy15187 222 GTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~~~ 241 (298)
|..|+|+.|.|.++.++...
T Consensus 70 ~~~~~g~~l~v~~a~~~~~~ 89 (102)
T 2xs2_A 70 QINFHGKKLKLGPAIRKQNL 89 (102)
T ss_dssp CCEETTEECEEEEEEECC--
T ss_pred CCeECCEEEEEEECCcCcch
Confidence 99999999999999876543
No 149
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=6.8e-16 Score=118.80 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=68.4
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
....++|||+| +++++++|+++|++||.|..| ...|. ++|||||+|.+.++|..|+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~---------------~~g~afV~f~~~~~a~~A~~~ 72 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGK---------------SKGIAYIEFKSEADAEKNLEE 72 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTE---------------EEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCC---------------cceEEEEEECCHHHHHHHHHH
Confidence 34568999999 999999999999999988766 22232 678899999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
|||..|+|+.|+|.|+.++..
T Consensus 73 l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 73 KQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TTEEEETTEEEEEEECSSSCC
T ss_pred hCCCEECCeEEEEEEcCCCCC
Confidence 999999999999999987644
No 150
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=123.09 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=67.5
Q ss_pred CCCcEEEE--cC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 143 KGGNTIFV--QG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 143 ~~~~tLfV--gn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.++++||| || +++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|+.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---------------------rgfaFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------------------KPYSFARYRTTEESKRAYV 81 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---------------------CSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------------------CCEEEEEECCHHHHHHHHH
Confidence 44678999 88 89999999999999999999987643 4558888888889999999
Q ss_pred HhCCcEE-----CCeEEEEEEccccccc
Q psy15187 219 EVNGTHV-----QGVKLKVSLARRQLKV 241 (298)
Q Consensus 219 ~lnG~~i-----~Gr~L~V~~A~~k~~~ 241 (298)
.|||..| .|++|.|.|+...+..
T Consensus 82 ~lnG~~~~~~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 82 TLNGKEVVDDLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp HTTTCEEECTTSCEEECEEEEESCCCCS
T ss_pred HhCCCEEccccCCCcEEEEEecccCccc
Confidence 9999999 6999999999875543
No 151
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=1.9e-15 Score=137.94 Aligned_cols=95 Identities=15% Similarity=0.287 Sum_probs=85.9
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccC-CeeEEEEeee-----cCceeEEecChhhhhhhhh------------------
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFG-KICSVSMEVE-----KGRGFVTFDSPESSDKAIT------------------ 197 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG-~I~~v~i~~d-----k~~gfV~f~~~~~adkai~------------------ 197 (298)
..++|||+| +++++++|+++|+.|| .|..|.|+.+ +++|||+|.+.++|++|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 357999999 8999999999999999 9999999874 6899999999999999981
Q ss_pred --------------------------------------------------------cCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 198 --------------------------------------------------------DDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 198 --------------------------------------------------------~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
.++|||||+|.+.++|..|+ .||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 13799999999999999999 999
Q ss_pred CcEECCeEEEEEEccccc
Q psy15187 222 GTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 222 G~~i~Gr~L~V~~A~~k~ 239 (298)
|..|+|+.|.|.||.+++
T Consensus 275 g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 275 RSLLGNREISVSLADKKP 292 (292)
T ss_dssp TEEETTEEEEEEECCCCC
T ss_pred CCEECCcEEEEEEecCCC
Confidence 999999999999999764
No 152
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=125.24 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=74.2
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCC---eeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGK---ICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~---I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
...+++|||+| +++|+++|+++|+.||. |..|.|+.++. |. ++|||||+|.+.++|..|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~---------------~~G~afV~F~~~~~a~~A 71 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GK---------------RRGDALIEMESEQDVQKA 71 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-ST---------------TCSEEEEEBSSHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CC---------------EeeEEEEEECCHHHHHHH
Confidence 45568999999 99999999999999998 89999998877 75 899999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|. |||..|+|+.|.|.++.++.
T Consensus 72 l~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 72 LE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp HT-TTTCCSSSSCCCCEECCHHH
T ss_pred HH-hCcceeCCeEEEEEECCHHH
Confidence 99 99999999999999998654
No 153
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=2.3e-16 Score=115.91 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=67.9
Q ss_pred EEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcE
Q psy15187 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTH 224 (298)
Q Consensus 147 tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~ 224 (298)
+|||+| +++++++|+++|++||.|..|.|+.++..|. ++|||||+|.+.++|..|+.. +|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~g~afV~f~~~~~a~~Ai~~-~~~~ 64 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK---------------RRGFCFITFKEEEPVKKIMEK-KYHN 64 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSS---------------SCCCEEEECSSSHHHHHHHTT-SSCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC---------------cCCEEEEEECCHHHHHHHHHh-CCCe
Confidence 599999 9999999999999999999999998877775 899999999999999999985 9999
Q ss_pred ECCeEEEEEEc
Q psy15187 225 VQGVKLKVSLA 235 (298)
Q Consensus 225 i~Gr~L~V~~A 235 (298)
|+|+.|.|.+|
T Consensus 65 ~~g~~l~v~~a 75 (75)
T 1iqt_A 65 VGLSKCEIKVA 75 (75)
T ss_dssp BTTBCCCEEEC
T ss_pred ECCEEEEEEEC
Confidence 99999999886
No 154
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.2e-15 Score=123.78 Aligned_cols=82 Identities=41% Similarity=0.702 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEcCCCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 140 EKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 140 ~~~~~~~tLfVgn~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
..+..+++|||+|.++++++|+++|++||.|.+|.|+ .++|||||+|.+.++|..||..
T Consensus 34 ~~~~~~~~lfVgnl~~te~~L~~~F~~~G~I~~v~i~---------------------~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 34 RAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMD---------------------PPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp -CCCCCCEEEEECSSCCHHHHHHHHSTTCCCSCEEEE---------------------TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHHccCCEEEEEEe---------------------CCCCEEEEEECCHHHHHHHHHH
Confidence 3445678999999889999999999999999999875 2566799999999999999999
Q ss_pred hCCcEECCeEEEEEEcccccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
|||..|+|+.|+|.|+.+++...
T Consensus 93 lng~~~~g~~l~V~~a~~~~~~~ 115 (121)
T 2bz2_A 93 LNGTQVESVQLKVNIARKQPMLD 115 (121)
T ss_dssp HTTCBCSSCBCEEEECCSSCC--
T ss_pred hCCCEECCeEEEEEEeCCCCCCC
Confidence 99999999999999999876543
No 155
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=2e-15 Score=119.85 Aligned_cols=77 Identities=29% Similarity=0.407 Sum_probs=68.0
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
....+++|||+| +++++++|+++|++||.|..|.|+ +|||||+|.+.++|..|+.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------------------kg~afV~f~~~~~A~~Ai~ 83 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------------------NGFAFVEFEEAESAAKAIE 83 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------------------TTEEEEECSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------------------CCEEEEEECCHHHHHHHHH
Confidence 345568999999 999999999999999999999886 3458888888999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..|+|+.|.|.|+.+++.
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 84 EVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp HHTTCEETTEECEEESCSCCC-
T ss_pred HcCCCEECCeEEEEEEecCCCC
Confidence 9999999999999999987654
No 156
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=128.29 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=70.0
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEE--Eeee---cCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVS--MEVE---KGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~--i~~d---k~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~ 214 (298)
..++++|||+| +++|+++|+++|++||.|..|. ++.+ ...| .++|||||+|.+.++|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g---------------~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG---------------RMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET---------------TTEEEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCC---------------CcccEEEEEeCCHHHHH
Confidence 45668999999 9999999999999999998751 1111 1223 36788999999999999
Q ss_pred HHHHHhCCcEECCeEEEEEEcccccc
Q psy15187 215 KAITEVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 215 ~Ai~~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.||..|||..|+|+.|+|.||++...
T Consensus 107 ~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 107 KALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp HHHHHHTTBEETTEECEEEECCCSCC
T ss_pred HHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 99999999999999999999987544
No 157
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=3.5e-15 Score=135.41 Aligned_cols=54 Identities=28% Similarity=0.548 Sum_probs=49.2
Q ss_pred CCCcEEEEcC--CCCCHHHHH----HHHhccCCeeEEEEeee---cCceeEEecChhhhhhhh
Q psy15187 143 KGGNTIFVQG--AGISEEFLR----QHFSIFGKICSVSMEVE---KGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~----~~F~~fG~I~~v~i~~d---k~~gfV~f~~~~~adkai 196 (298)
.++++|||+| +++++++|+ ++|++||.|.+|.|+.+ +++|||+|.+.++|++||
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~ 69 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 69 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHH
Confidence 4568999999 999999976 89999999999998863 789999999999999998
No 158
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=7.2e-16 Score=122.93 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=66.0
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
+++|||+| +++++++|+++|++||.|..|.|+. ++|||||+|.+.++|..||..|||
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---------------------~~g~afV~f~~~~~A~~Ai~~l~g 68 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---------------------GGITAIVEFLEPLEARKAFRHLAY 68 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---------------------SSSCEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------------------CCCEEEEEeCCHHHHHHHHHHhCC
Confidence 47999999 9999999999999999999998864 345588888888899999999999
Q ss_pred cEECCeEEEEEEcccc
Q psy15187 223 THVQGVKLKVSLARRQ 238 (298)
Q Consensus 223 ~~i~Gr~L~V~~A~~k 238 (298)
..|+|+.|+|.||...
T Consensus 69 ~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 69 SKFHHVPLYLEWAPIG 84 (111)
T ss_dssp CBSSSSBCEEEEEETT
T ss_pred CEECCeEEEEEECCCC
Confidence 9999999999999864
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=131.58 Aligned_cols=84 Identities=19% Similarity=0.393 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+..+++|||+| +++++++|+++|++||.|..|.|+.++ .|. ++|||||+|.+.++|..||.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~---------------~kG~afV~F~~~~~A~~Ai~ 147 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGR---------------SLGTADVHFERRADALKAMK 147 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSS---------------CSCCEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCC---------------EeeEEEEEeCCHHHHHHHHH
Confidence 445678999999 999999999999999999999999887 564 88999999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..|+|+.|+|.||.....
T Consensus 148 ~lng~~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 148 QYKGVPLDGRPMDIQLVASQID 169 (177)
T ss_dssp HSTTCBCSSSBCEEEEESSGGG
T ss_pred HhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999986543
No 160
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=4.1e-15 Score=145.27 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=76.9
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
.+.++|||+| +.+|+++|.++|++||.|+.|.|+.++..|. ++|||||+|.+.++|..||..|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~---------------~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGK---------------PRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCC---------------ccceEEEeeccHHHHHHHHHHc
Confidence 4557999999 9999999999999999999999999877775 8999999999999999999999
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|.|.|+.++..
T Consensus 165 ng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 165 DGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCCEECCEEEEEEEeCCCCC
Confidence 99999999999999987544
No 161
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.6e-16 Score=123.52 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=67.5
Q ss_pred CCCCcEEEEcC--CC-CCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AG-ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 142 ~~~~~tLfVgn--~~-~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
..++++|||+| ++ +++++|+++|++||.|.+|.|++ ++|||||+|.+.++|..||.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---------------------~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---------------------MKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---------------------CCCEEEEEECCHHHHHHHHH
Confidence 45578999999 77 99999999999999999998863 35568888888889999999
Q ss_pred HhC--CcEECCeEEEEEEccccccc
Q psy15187 219 EVN--GTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 219 ~ln--G~~i~Gr~L~V~~A~~k~~~ 241 (298)
.|| +..|+|++|+|.||..+...
T Consensus 81 ~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 81 HCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp HHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred HhccCCceECCEEEEEEECcccccc
Confidence 886 45699999999999875543
No 162
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.4e-15 Score=117.67 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=67.3
Q ss_pred CCCCcEEEEcC--C-CCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--A-GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 142 ~~~~~tLfVgn--~-~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
..++++|||+| + ++++++|+++|++||.|..|.|. +|||||+|.+.++|..|+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------------------~g~afV~f~~~~~A~~A~~ 63 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------------------NAFGFIQFDNPQSVRDAIE 63 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------------------TTEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------------------CCEEEEEECCHHHHHHHHH
Confidence 34568999999 6 89999999999999999999873 4569999999999999999
Q ss_pred HhCCcEECCeEEEEEEcccccc
Q psy15187 219 EVNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
.|||..+.|+.|+|.|+.++..
T Consensus 64 ~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 64 CESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp HHTCSSCBTTTBCEEEEECCCC
T ss_pred HcCCCeeCCcEEEEEEcCcCCC
Confidence 9999999999999999987654
No 163
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=3.3e-15 Score=114.65 Aligned_cols=76 Identities=24% Similarity=0.411 Sum_probs=60.0
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.+...++|||+| +++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|..
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------------------srGfaFV~F~~~~~A~~--- 63 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------------------FRAFAFVTFADDKVAQS--- 63 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------------------CCSEEEEEESCHHHHHH---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------------------CCCEEEEEECCHHHHHH---
Confidence 345568999999 99999999999999999999998863 56779999999999873
Q ss_pred HhCCcEE--CCeEEEEEEcccccc
Q psy15187 219 EVNGTHV--QGVKLKVSLARRQLK 240 (298)
Q Consensus 219 ~lnG~~i--~Gr~L~V~~A~~k~~ 240 (298)
|+|..+ .|+.|.|.+|.++..
T Consensus 64 -~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp -HTTCEEEETTEEEEEEECC----
T ss_pred -HcCCCcccCCEEEEEEEcCCCCc
Confidence 666655 499999999987643
No 164
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=4.9e-15 Score=117.65 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=70.4
Q ss_pred CCCcEEEEcC-CC------CCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHH
Q psy15187 143 KGGNTIFVQG-AG------ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215 (298)
Q Consensus 143 ~~~~tLfVgn-~~------~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~ 215 (298)
.++++|+|.| .+ -++++|+++|++||.|.+|.|+.++..+ ++++|||||+|.+.++|.+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~--------------~~~~G~~FV~f~~~~~A~~ 71 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAP--------------DDEAVRIFLEFERVESAIK 71 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCC--------------TTTSEEEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCC--------------CCCcEEEEEEECCHHHHHH
Confidence 4457999999 42 3789999999999999999999876432 1378999999999999999
Q ss_pred HHHHhCCcEECCeEEEEEEccc
Q psy15187 216 AITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 216 Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
|+..|||..++|+.|+|.++..
T Consensus 72 Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 72 AVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHCCCEECCcEEEEEEcCH
Confidence 9999999999999999999975
No 165
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=7e-15 Score=121.48 Aligned_cols=75 Identities=17% Similarity=0.328 Sum_probs=67.3
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCce-EEEEeCCHHHHHHHHHHhCC
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR-GFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGf-aFV~F~~~e~A~~Ai~~lnG 222 (298)
..|||+| +.+|+++|+++|++||.|.+|.|+.+ ++|| |||+|.+.++|..|+..|||
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--------------------~~gfqAFVef~~~~~A~~Ai~~LnG 88 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--------------------NNQFQALLQYADPVSAQHAKLSLDG 88 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--------------------TTEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--------------------CCCcEEEEEECCHHHHHHHHHHcCC
Confidence 5889999 99999999999999999999987653 2344 99999999999999999999
Q ss_pred cEECC--eEEEEEEcccccc
Q psy15187 223 THVQG--VKLKVSLARRQLK 240 (298)
Q Consensus 223 ~~i~G--r~L~V~~A~~k~~ 240 (298)
..|.| +.|+|+|+++...
T Consensus 89 ~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 89 QNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp CEEETTEEEEEEEECSCSSC
T ss_pred CeecCCCcEEEEEecCCCce
Confidence 99998 9999999998654
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=8.3e-15 Score=128.98 Aligned_cols=76 Identities=18% Similarity=0.334 Sum_probs=68.1
Q ss_pred CCcEEEEcC-C--CCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 144 GGNTIFVQG-A--GISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 144 ~~~tLfVgn-~--~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
++++|||+| . .+++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|..||..|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--------------------~~g~afV~f~~~~~A~~Ai~~l 62 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--------------------KPGAAMVEMADGYAVDRAITHL 62 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--------------------STTCEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 468999999 4 7999999999999999999998764 3566999999999999999999
Q ss_pred CCcEECCeEEEEEEccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~ 239 (298)
||..|.|+.|+|.+++.+.
T Consensus 63 ng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 63 NNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp TTCEETTEECEEEECSCSC
T ss_pred CCCEECCceEEEEEccCCc
Confidence 9999999999999997643
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=9.1e-15 Score=125.26 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=68.4
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
.-.+|||+| +.+|+++|+++|++||.|.+|.|..++. +|||||+|.+.++|..|+..||
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~-------------------rgfAFVeF~d~~~A~~Ai~~Ln 105 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN-------------------QFQALLQYADPVSAQHAKLSLD 105 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSS-------------------CEEEEEEESCHHHHHHHHHHST
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-------------------CCEEEEEECCHHHHHHHHHHhC
Confidence 346899999 9999999999999999999998865433 3459999999999999999999
Q ss_pred CcEECC--eEEEEEEcccccc
Q psy15187 222 GTHVQG--VKLKVSLARRQLK 240 (298)
Q Consensus 222 G~~i~G--r~L~V~~A~~k~~ 240 (298)
|..|.| +.|+|.|++++..
T Consensus 106 G~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 106 GQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp TBCSSSSCSCEEEEECSSSSC
T ss_pred CCEecCCCcEEEEEEecCCcc
Confidence 999965 9999999998643
No 168
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=111.66 Aligned_cols=77 Identities=22% Similarity=0.414 Sum_probs=66.0
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|.+| +.++..|. ||||+|.+.++|..||. |
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~------------------~afV~f~~~~~a~~ai~-l 64 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV------------------FAIVEMGDVGAREAVLS-Q 64 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC------------------EEEEEESSHHHHHHHHT-C
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc------------------EEEEEECCHHHHHHHHh-c
Confidence 3447999999 999999999999999999987 44544431 49999999999999999 9
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
||..|+|+.|.|.++..+..
T Consensus 65 ~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 65 SQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp SCCEETTEECCCBCSCCSCC
T ss_pred CCeEECCEEEEEEECCcCCC
Confidence 99999999999998876544
No 169
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=1e-15 Score=127.67 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=72.1
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
+...++|||+| +++|+++|+++|++|| |+.|.|+.++. |. ++|||||+|.+.++|.+|| .
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~---------------srGfaFV~F~~~e~A~~Al-~ 104 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GR---------------VTGEADVEFATHEEAVAAM-S 104 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SC---------------SSCCCEEECSHHHHHHHHT-T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CC---------------CceEEEEEeCCHHHHHHHH-h
Confidence 34567999999 9999999999999999 77999998876 75 8999999999999999999 8
Q ss_pred hCCcEECCeEEEEEEcccccc
Q psy15187 220 VNGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~k~~ 240 (298)
+|+..|+|+.|.|.++.....
T Consensus 105 ~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 105 KDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSCSSSSCCCCCEECCCSCC
T ss_pred hCCCEECCEEEEEEECCCCCC
Confidence 999999999999999887543
No 170
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.5e-15 Score=121.90 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=69.4
Q ss_pred cEEEEcC------CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCC----HHH---
Q psy15187 146 NTIFVQG------AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDS----PES--- 212 (298)
Q Consensus 146 ~tLfVgn------~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~----~e~--- 212 (298)
++|||+| +.+++.+|+++|+.||+|.+|.++.|+.+|. ++|||||+|.+ +++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~---------------slGfgfVef~d~~g~~d~a~k 67 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSAL---------------PLHVYLIKYASSDGKINDAAK 67 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCC---------------EEEEEEEECC------CCHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc---------------eeeEEEEEECCCCCCcchHHH
Confidence 6899998 6899999999999999999999999999997 99999999996 333
Q ss_pred -HHHHHH--HhCCcEECCeEEEEEEccc
Q psy15187 213 -SDKAIT--EVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 213 -A~~Ai~--~lnG~~i~Gr~L~V~~A~~ 237 (298)
|.+||. .|||..|+|++|+|.+.+.
T Consensus 68 AA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 68 AAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp HHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred HHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 889998 8899999999999998764
No 171
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=1.2e-14 Score=110.58 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=67.0
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
+..++|||+| +++++++|+++|++| .|.+|.|. + ++|||||+|.+.++|..|+..|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~-------------------~~g~afV~f~~~~~a~~Ai~~l 60 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--R-------------------NKRTAFVTLLNGEQAQNAIQMF 60 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--G-------------------GGTEEEECCSCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--C-------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 4557999999 999999999999999 99999874 2 5667999999999999999999
Q ss_pred CCcEECCeEEEEEEccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~ 239 (298)
||..++|+.|+|.|+....
T Consensus 61 ~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 61 HQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp TTEEETTEEEEEEECCCCC
T ss_pred CCCeECCcEEEEEEcCCCc
Confidence 9999999999999997643
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=2.2e-14 Score=117.45 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=66.0
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
..|||+| +.+++++|+++|++||.|.+|.|+. + .|| +|||+|.+.++|..|+..|||.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf------------------~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGI------------------QAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSE------------------EEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCC------------------EEEEEECCHHHHHHHHHHhCCC
Confidence 4678999 9999999999999999999998864 2 243 3999999999999999999999
Q ss_pred EECC--eEEEEEEcccccc
Q psy15187 224 HVQG--VKLKVSLARRQLK 240 (298)
Q Consensus 224 ~i~G--r~L~V~~A~~k~~ 240 (298)
.|.| +.|+|.||+++..
T Consensus 86 ~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 86 DIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp CCBTTBSEEEEECCSCSCC
T ss_pred EecCCCeEEEEEEecCCcc
Confidence 9987 7999999997653
No 173
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=8.4e-15 Score=117.30 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=62.9
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
...++|||+| +++++++|+++|++||.|..|.|+.+ || |||+|.+.++|..||..|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~-------------------afV~f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GT-------------------GVVEFVRKEDMTYAVRKL 71 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SE-------------------EEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CE-------------------EEEEECCHHHHHHHHHHh
Confidence 3458999999 99999999999999999999998765 44 999999999999999999
Q ss_pred CCcEECCeE-----EEEEEcccc
Q psy15187 221 NGTHVQGVK-----LKVSLARRQ 238 (298)
Q Consensus 221 nG~~i~Gr~-----L~V~~A~~k 238 (298)
||..|+|+. |+|..+.++
T Consensus 72 ~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 72 DNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp TTCBCCCTTSCCCBCEEEECC--
T ss_pred CCCEECCcEeeeEEEEeccCCCC
Confidence 999999998 677666653
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=110.36 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=62.1
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
..+++|||+| +++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++|+..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------------------~~g~afV~f~~~~~a~~~~~~- 61 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------------------FRAFAFVTFADDQIAQSLCGE- 61 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------------------CCSCCEEECSCHHHHHHTTTC-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------------------CCCEEEEEECCHHHHHHHhcC-
Confidence 3458999999 99999999999999999999998754 466799999999898754221
Q ss_pred CCcEECCeEEEEEEcccccc
Q psy15187 221 NGTHVQGVKLKVSLARRQLK 240 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A~~k~~ 240 (298)
+..+.|+.|.|.++.++..
T Consensus 62 -~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 62 -DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp -EEEETTEEEEEECCCCCCC
T ss_pred -CceeCCEEEEEEecCCCCC
Confidence 3445899999999987655
No 175
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=114.36 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=66.2
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCc---eeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGR---GFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~---gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
...++|||+| +++++++|+++|++||.|. +.++.++.. |. ++|||||+|.+.++|.+||
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~---------------~~G~aFV~f~~~~~a~~Ai 69 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFP---------------PKGYAFLLFQEESSVQALI 69 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSC---------------TTSEEEECCSSHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCC---------------cccEEEEEECCHHHHHHHH
Confidence 4458999999 9999999999999999999 888877554 54 8999999999999999999
Q ss_pred HHhCCcEECCeEEEEEEccc
Q psy15187 218 TEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A~~ 237 (298)
..|+ .++|+.|.+..+..
T Consensus 70 ~~~~--~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 70 DACL--EEDGKLYLCVSSPT 87 (114)
T ss_dssp HHSE--EETTEEEEEECCSS
T ss_pred Hhhh--hcCCcEEEeccCCC
Confidence 9994 47888888876553
No 176
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.53 E-value=6.1e-15 Score=121.09 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcC--CCCCHHHHHHHHhccCCee--EEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKIC--SVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 141 ~~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~--~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
.+...++|||+| +++|+++|+++|++| .|+ .|.|+.|+. |. ++|||||+|.+.++|.+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-Gr---------------srGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GK---------------ITGEAFVQFASQELAEKA 100 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SS---------------SCSEEEEEESSTTHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CC---------------CceEEEEEECCHHHHHHH
Confidence 345568999999 999999999999999 677 899998876 75 899999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k 238 (298)
|.. ++..|+|+.|.|.++.++
T Consensus 101 l~~-~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 101 LGK-HKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp HTT-TTCCBTTBCCCCEEECHH
T ss_pred HHH-CCCEECCEEEEEEECCHH
Confidence 984 789999999999988754
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=6.2e-15 Score=120.42 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=70.5
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCe----eEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKI----CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I----~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
...++|||+| +++|+++|+++|++||.| ..|.|+.+. .|. ++|||||+|.+.++|.+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr---------------~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGR---------------PTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSC---------------EEEEEEECCSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCC---------------EeeEEEEEECCHHHHHHH
Confidence 3457999999 999999999999999986 689888874 564 789999999999999999
Q ss_pred HHHhCCcEECCeEEEEEEccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~ 239 (298)
|.. |+..|+|+.|.|..+.++.
T Consensus 85 l~~-~~~~l~gR~i~V~~a~~~e 106 (123)
T 2dha_A 85 LRK-HKDLLGKRYIELFRSTAAE 106 (123)
T ss_dssp HTT-TTEESSSCEECCEEECHHH
T ss_pred HHh-CCCeeCCeEEEEEECCHHH
Confidence 986 9999999999999987643
No 178
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=110.49 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=63.9
Q ss_pred CCcEEEEcC--CCCCHHH----HHHHHhcc-CCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHH
Q psy15187 144 GGNTIFVQG--AGISEEF----LRQHFSIF-GKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~----L~~~F~~f-G~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~A 216 (298)
..+.|||+| +++++++ |+++|++| |+|.+|. .|||||.|.+.++|..|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------------------------gG~AfV~F~~~esA~~A 62 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------------------------GCSAILRFINQDSAERA 62 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------------------------TTCEEEEESSHHHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------------------------cCEEEEEECCHHHHHHH
Confidence 334599999 9999988 56899999 5999971 15599999999999999
Q ss_pred HHHhCCcEECCeEEEEEEcccccccc
Q psy15187 217 ITEVNGTHVQGVKLKVSLARRQLKVA 242 (298)
Q Consensus 217 i~~lnG~~i~Gr~L~V~~A~~k~~~~ 242 (298)
++.|||..|.|++|+|+||..+...-
T Consensus 63 ~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 63 QKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp HHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred HHHhcCCccCCceEEEEecCCCccee
Confidence 99999999999999999999876644
No 179
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=4.9e-14 Score=106.07 Aligned_cols=69 Identities=25% Similarity=0.448 Sum_probs=61.3
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhcc----C-------CeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCH
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIF----G-------KICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSP 210 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~f----G-------~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~ 210 (298)
..++|||+| +++++++|+++|++| | .|.+|.++.+ +|||||+|.+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---------------------kg~afV~f~~~ 63 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------------------KNFAFLEFRSV 63 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---------------------SSEEEEEESSH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---------------------CcEEEEEcCCH
Confidence 447999999 999999999999999 8 8999988754 45588888888
Q ss_pred HHHHHHHHHhCCcEECCeEEEEEE
Q psy15187 211 ESSDKAITEVNGTHVQGVKLKVSL 234 (298)
Q Consensus 211 e~A~~Ai~~lnG~~i~Gr~L~V~~ 234 (298)
++|..|+ .|||..|+|+.|+|+.
T Consensus 64 ~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 64 DETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp HHHHHHG-GGTTCEETTEECEEEC
T ss_pred HHHHHHH-hcCCCEECCeEEEEeC
Confidence 8999999 9999999999999963
No 180
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.6e-13 Score=107.13 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=69.8
Q ss_pred CCCCCCcEEEEcC-CCCC------------HHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEE
Q psy15187 140 EKPKGGNTIFVQG-AGIS------------EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVT 206 (298)
Q Consensus 140 ~~~~~~~tLfVgn-~~~t------------e~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~ 206 (298)
..+..+++|+|.| +... +++|+++|++||.|..|.| .++. ++|||||+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~------------------~~G~afV~ 70 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH------------------PDGVASVS 70 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC------------------TTCEEEEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC------------------CCEEEEEE
Confidence 3456678999999 5544 4899999999999999955 4421 57789999
Q ss_pred eCCHHHHHHHHHHhCCcEECCeEEEEEEccccccc
Q psy15187 207 FDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKV 241 (298)
Q Consensus 207 F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k~~~ 241 (298)
|.+.++|..|+..|||..|+|++|+|.|+.++...
T Consensus 71 f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 71 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCS
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCc
Confidence 99999999999999999999999999999876553
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=1.7e-13 Score=119.74 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=67.4
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|||+| +++++++|+++|++||.|..|.|+.+.. |- ++|||||+|.+.++|..|+..++ .
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~---------------~kG~aFVeF~~~e~A~~A~~~~~-~ 172 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KA---------------FKGSIFVVFDSIESAKKFVETPG-Q 172 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CC---------------EEEEEEEEESSHHHHHHHHHCTT-C
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CC---------------cccEEEEEECCHHHHHHHHHhCC-C
Confidence 6899999 9999999999999999999999998754 32 68999999999999999998665 5
Q ss_pred EECCeEEEEEEccc
Q psy15187 224 HVQGVKLKVSLARR 237 (298)
Q Consensus 224 ~i~Gr~L~V~~A~~ 237 (298)
.|+|+.|.|.|+..
T Consensus 173 ~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 173 KYKETDLLILFKDD 186 (193)
T ss_dssp EETTEECEEEETTT
T ss_pred eECCEEEEEEEhHH
Confidence 99999999998764
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=6.3e-14 Score=126.94 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=64.7
Q ss_pred CCCcEEEEcC--CCC---------CHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHH
Q psy15187 143 KGGNTIFVQG--AGI---------SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211 (298)
Q Consensus 143 ~~~~tLfVgn--~~~---------te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e 211 (298)
..+++||||| ..+ ++++|+++|++||+|.+|.|+.+ +|||||+|.+.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---------------------kG~AFV~F~~~~ 190 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---------------------KNCGFVKFKYQA 190 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---------------------GTEEEEEESSHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---------------------CCEEEEEeCCHH
Confidence 4568999999 666 79999999999999999998853 455778888888
Q ss_pred HHHHHHHHhCCcEE------------CCeEEEEEEcccccc
Q psy15187 212 SSDKAITEVNGTHV------------QGVKLKVSLARRQLK 240 (298)
Q Consensus 212 ~A~~Ai~~lnG~~i------------~Gr~L~V~~A~~k~~ 240 (298)
+|+.|+..|||..| .|+.|.|.||...+.
T Consensus 191 ~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 191 NAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp HHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred HHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 99999999999999 899999999987554
No 183
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.44 E-value=3.8e-13 Score=106.64 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=67.6
Q ss_pred CCcEEEEcC----CCC--------CHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHH
Q psy15187 144 GGNTIFVQG----AGI--------SEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPE 211 (298)
Q Consensus 144 ~~~tLfVgn----~~~--------te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e 211 (298)
+++.|.+.| .++ .+++|++.|++||.|.+|.|+.++..+- +.++|||||+|.+.+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-------------~~~~G~~fV~f~~~~ 70 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-------------VPGCGKIFVEFTSVF 70 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-------------CTTTTEEEEEESSHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-------------cCCcEEEEEEECCHH
Confidence 346788988 222 2478999999999999999998864321 136889999999999
Q ss_pred HHHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 212 SSDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 212 ~A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
+|.+|+..|||..++||+|+|.|+..
T Consensus 71 ~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 71 DCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 99999999999999999999999865
No 184
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=3.6e-13 Score=109.16 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=68.1
Q ss_pred CCcEEEEcC-CC------CCHHHHHHHHhccCCeeEEEEeeecC----ceeEEecChhhhhhhhhcCCceEEEEeCCHHH
Q psy15187 144 GGNTIFVQG-AG------ISEEFLRQHFSIFGKICSVSMEVEKG----RGFVTFDSPESSDKAITDDCARGFVTFDSPES 212 (298)
Q Consensus 144 ~~~tLfVgn-~~------~te~~L~~~F~~fG~I~~v~i~~dk~----~gfV~f~~~~~adkai~~skGfaFV~F~~~e~ 212 (298)
+++.|++.| .+ --+++|++.|++||.|.+|.|+.++. .+- ++||+||+|.+.++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~---------------~~G~~FV~F~~~e~ 83 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE---------------IIVKIFVEFSIASE 83 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCE---------------EEEEEEEEESSHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCc---------------ceEEEEEEECCHHH
Confidence 457899999 22 23789999999999999999998853 233 67889999999999
Q ss_pred HHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 213 SDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 213 A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
|.+|+..|||..|+||.|+|.|+..
T Consensus 84 A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 84 THKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHCCCEECCcEEEEEEcCh
Confidence 9999999999999999999999864
No 185
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=5.9e-13 Score=105.27 Aligned_cols=67 Identities=18% Similarity=0.408 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHH------------hccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 153 AGISEEFLRQHF------------SIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 153 ~~~te~~L~~~F------------~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
+.+++++|+++| ++||.|.+|.|+.+.. +. ++|||||+|.+.++|.+|+..|
T Consensus 25 ~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~---------------~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 25 SAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DH---------------LVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SS---------------SEEEEEEEESCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CC---------------ccEEEEEEECCHHHHHHHHHHH
Confidence 445666666555 9999999999987754 43 7889999999999999999999
Q ss_pred CCcEECCeEEEEEEc
Q psy15187 221 NGTHVQGVKLKVSLA 235 (298)
Q Consensus 221 nG~~i~Gr~L~V~~A 235 (298)
||..++|+.|+|.|+
T Consensus 89 ng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 89 NNRWFNGQPIHAELS 103 (104)
T ss_dssp TTCEETTEECCEEEC
T ss_pred CCCEECCEEEEEEEc
Confidence 999999999999986
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.37 E-value=8.4e-13 Score=116.12 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=65.7
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCe--eEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKI--CSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I--~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
.++++|||+| +.+|+++|+++|++||.| .+|.|+.+++ - ++|||||+|.+.++|..||.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~--~---------------~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS--E---------------RSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS--S---------------SSEEEEEECSSHHHHHHHHH
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC--C---------------CceEEEEEeCCHHHHHHHHH
Confidence 4567999999 999999999999999999 8998887752 1 45779999999999999999
Q ss_pred HhCCcEECCe----EEEEEEc
Q psy15187 219 EVNGTHVQGV----KLKVSLA 235 (298)
Q Consensus 219 ~lnG~~i~Gr----~L~V~~A 235 (298)
.|||+.|+|. ++.|.||
T Consensus 184 ~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 184 FLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHTTCEECCSSSSSCEECEEE
T ss_pred HhCCCCccCCCCCcceEEEec
Confidence 9999999976 6777665
No 187
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=102.98 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q psy15187 153 AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232 (298)
Q Consensus 153 ~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V 232 (298)
.++++++|+++|++||.|.+|.|+. .++|||||+|.+.++|..||..++| +.|++|+|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~--------------------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS--------------------KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES--------------------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc--------------------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 5689999999999999999998872 2678899999999999999998655 67999999
Q ss_pred EEcccccc
Q psy15187 233 SLARRQLK 240 (298)
Q Consensus 233 ~~A~~k~~ 240 (298)
.|+..++.
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 188
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=8.1e-12 Score=100.65 Aligned_cols=77 Identities=8% Similarity=0.107 Sum_probs=63.8
Q ss_pred CCCcEEEEcC-CCCC-----------HHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCH
Q psy15187 143 KGGNTIFVQG-AGIS-----------EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSP 210 (298)
Q Consensus 143 ~~~~tLfVgn-~~~t-----------e~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~ 210 (298)
.++..|.+.| .+.. +++|++.|++||.|.+|.|+.+.. +|||||+|.+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~-------------------~G~~fV~f~~~ 65 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSA-------------------QGNVYVKCPSI 65 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCT-------------------TCCEEEECSSH
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCC-------------------cEEEEEEECCH
Confidence 4456788888 3322 346899999999999998876543 55699999999
Q ss_pred HHHHHHHHHhCCcEECCeEEEEEEcccc
Q psy15187 211 ESSDKAITEVNGTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 211 e~A~~Ai~~lnG~~i~Gr~L~V~~A~~k 238 (298)
++|.+|+..|||..++|+.|+|.|+...
T Consensus 66 e~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 66 AAAIAAVNALHGRWFAGKMITAAYVPLP 93 (114)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEEcHH
Confidence 9999999999999999999999998753
No 189
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=2.9e-11 Score=114.73 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=63.0
Q ss_pred CCCCcEEEEcC----CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 142 PKGGNTIFVQG----AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 142 ~~~~~tLfVgn----~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
..++.+||||| +.+||++|+++|++||.|.+|.|.. +||||||+|.+.++|.+||
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---------------------~kgfaFV~f~~~~~A~~Ai 73 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------------------NKPYSFARYRTTEESKRAY 73 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---------------------TCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------------------CCCEEEEEECCHHHHHHHH
Confidence 45667999998 7899999999999999999987653 2455999999999999999
Q ss_pred HHhCCcEEC---Ce--EEEEEEcc
Q psy15187 218 TEVNGTHVQ---GV--KLKVSLAR 236 (298)
Q Consensus 218 ~~lnG~~i~---Gr--~L~V~~A~ 236 (298)
..|||..+. |+ .|.|.|+.
T Consensus 74 ~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 74 VTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHTTTCEEECTTSCEEECEEEECS
T ss_pred HHhCCCccccccCCceEEEEEEee
Confidence 999999983 45 68888885
No 190
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=9e-10 Score=85.19 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=49.0
Q ss_pred HHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEccc
Q psy15187 158 EFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 158 ~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
.+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||. |||..++|+.|+|.++.+
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~-----------------------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK-----------------------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS-----------------------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC-----------------------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 5689999999999999998754 4566666669999998 999999999999999986
Q ss_pred c
Q psy15187 238 Q 238 (298)
Q Consensus 238 k 238 (298)
.
T Consensus 86 d 86 (91)
T 2dnr_A 86 S 86 (91)
T ss_dssp S
T ss_pred C
Confidence 4
No 191
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.1e-09 Score=89.13 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=63.2
Q ss_pred CCCCcEEEEcC--CC-CCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCC-HHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AG-ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDS-PESSDKAI 217 (298)
Q Consensus 142 ~~~~~tLfVgn--~~-~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~-~e~A~~Ai 217 (298)
-..|+-|||+| ++ +++++|+++|++||.|..|.++.+..+|| |.|.+ .++|..|+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgf---------------------Vrf~~~~~~A~~av 73 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGI---------------------ILFKEKAKEALGKA 73 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEE---------------------EEESSCHHHHHHHH
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEE---------------------EEECCChHHHHHHH
Confidence 46779999999 88 99999999999999999999987766555 55555 45999999
Q ss_pred HHhC--CcEECCeEEEEEEcccc
Q psy15187 218 TEVN--GTHVQGVKLKVSLARRQ 238 (298)
Q Consensus 218 ~~ln--G~~i~Gr~L~V~~A~~k 238 (298)
..|| |..|.|..+++.+-...
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~Ge 96 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLEGE 96 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECCHH
T ss_pred HHhhcCCcEEeCcEEEEEECCCH
Confidence 9994 88899988888776643
No 192
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=2.5e-09 Score=94.09 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEE
Q psy15187 153 AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232 (298)
Q Consensus 153 ~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V 232 (298)
.+-.+++|++.|++||.|.+|.|+.+...+. ..+.++||+||+|.+.++|.+|+..|||..++||+|.|
T Consensus 139 ~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~-----------~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 139 DDDLEGEVTEECGKFGAVNRVIIYQEKQGEE-----------EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp CTTHHHHHHHHHTTTSCEEEEEEEEEECCSS-----------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHHHccCCeEEEEEecCCCCcc-----------cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 4456788999999999999999986643220 11237889999999999999999999999999999999
Q ss_pred EEccc
Q psy15187 233 SLARR 237 (298)
Q Consensus 233 ~~A~~ 237 (298)
.+...
T Consensus 208 ~~~~~ 212 (222)
T 3dxb_A 208 EVYDQ 212 (222)
T ss_dssp EECCH
T ss_pred EEcCH
Confidence 99763
No 193
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=9e-09 Score=80.07 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=46.2
Q ss_pred HHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCcEECCeEEEEEEcc
Q psy15187 158 EFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236 (298)
Q Consensus 158 ~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~~i~Gr~L~V~~A~ 236 (298)
.+|.+.|.+||.|..++++.|+ +||+| .+.++|.+||. |||..++||.|+|.+..
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~--~fVtF---------------------~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ--MLVTF---------------------ADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE--EEEEC---------------------SCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc--EEEEE---------------------cChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 4589999999999999998775 55555 44559999998 99999999999998754
No 194
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.78 E-value=7.5e-09 Score=85.98 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=50.2
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-----cCceeEEecChhhhhhhhh
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-----k~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+| +++|+++|+++|++||.|..|.|+.+ +++|||+|.+.++|.+|+.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence 457999999 99999999999999999999999987 6789999999999999993
No 195
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.77 E-value=9.5e-09 Score=89.78 Aligned_cols=72 Identities=31% Similarity=0.490 Sum_probs=59.4
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee----cCceeEEecChhhhhhhhhcCCc------eEEEEeCCHHH
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPESSDKAITDDCA------RGFVTFDSPES 212 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d----k~~gfV~f~~~~~adkai~~skG------faFV~F~~~e~ 212 (298)
.++|||+| +.+++++|+++|++||.|..|.|+.+ +++|||+|.+.++|++||..--| .-.|.|.....
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 36899999 99999999999999999999999976 68999999999999999943222 23678877654
Q ss_pred HHHH
Q psy15187 213 SDKA 216 (298)
Q Consensus 213 A~~A 216 (298)
...+
T Consensus 183 ~~~~ 186 (213)
T 4f02_A 183 EREA 186 (213)
T ss_dssp HHHH
T ss_pred ccch
Confidence 4443
No 196
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.76 E-value=1.4e-08 Score=91.75 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=68.1
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHH
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
...+++|||+| .++++++|+++|++||.|.+|.|+.++ +|||||+|.+.++|..|+..
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--------------------~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--------------------HDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--------------------CcEEEEEeCCHHHHHHHHHH
Confidence 34568999999 999999999999999999999988653 34599999999999999999
Q ss_pred hCCcEEC-CeEEEEEEccc
Q psy15187 220 VNGTHVQ-GVKLKVSLARR 237 (298)
Q Consensus 220 lnG~~i~-Gr~L~V~~A~~ 237 (298)
|||..|+ |+.|+|.||+.
T Consensus 264 l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 264 LQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cCCcEeCCCCEEEEEEecC
Confidence 9999999 99999999873
No 197
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.76 E-value=1.5e-08 Score=85.97 Aligned_cols=55 Identities=36% Similarity=0.602 Sum_probs=50.7
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhhhc
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai~~ 198 (298)
..++|||+| +++++++|+++|++||.|..|.|+.+ +++|||+|.+.++|++|+..
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 447999999 89999999999999999999999976 57899999999999999954
No 198
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.9e-08 Score=82.61 Aligned_cols=57 Identities=26% Similarity=0.456 Sum_probs=51.6
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhhhc
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai~~ 198 (298)
...+++|||+| .++++++|+++|++||.|..|.++.+ +++|||+|.+.++|++|+..
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 148 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 148 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 34567999999 89999999999999999999999877 57899999999999999953
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.74 E-value=1.6e-08 Score=84.08 Aligned_cols=56 Identities=20% Similarity=0.487 Sum_probs=51.4
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhhhc
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai~~ 198 (298)
...++|||+| +++++++|+++|++||.|..|.|+.+ +++|||+|.+.++|++|+..
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 4468999999 89999999999999999999999987 57999999999999999954
No 200
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.72 E-value=1.7e-08 Score=86.89 Aligned_cols=54 Identities=31% Similarity=0.618 Sum_probs=50.3
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhhh
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai~ 197 (298)
..++|||+| +++++++|+++|++||.|..|.|+.+ +++|||+|.+.++|.+|+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 447999999 89999999999999999999999987 6899999999999999995
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.71 E-value=2.1e-08 Score=85.15 Aligned_cols=57 Identities=19% Similarity=0.493 Sum_probs=52.2
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhhhc
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai~~ 198 (298)
+...++|||+| +++++++|+++|++||.|..|.|+.+ +++|||+|.+.++|++|+..
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 35668999999 89999999999999999999999987 67999999999999999954
No 202
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.70 E-value=3.3e-08 Score=81.59 Aligned_cols=56 Identities=23% Similarity=0.471 Sum_probs=51.0
Q ss_pred CCCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeec------CceeEEecChhhhhhhhh
Q psy15187 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK------GRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 142 ~~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk------~~gfV~f~~~~~adkai~ 197 (298)
....++|||+| ..+++++|+++|++||.|..|.|+.+. ++|||+|.+.++|.+|+.
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34557999999 899999999999999999999998874 789999999999999995
No 203
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.68 E-value=1.5e-08 Score=83.79 Aligned_cols=53 Identities=30% Similarity=0.612 Sum_probs=49.4
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhhh
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai~ 197 (298)
.++|||+| +++++++|+++|++||.|..|.|+.+ +|+|||+|.+.++|++|+.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 46899999 99999999999999999999999876 4799999999999999995
No 204
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.67 E-value=3.3e-08 Score=81.25 Aligned_cols=55 Identities=29% Similarity=0.585 Sum_probs=50.3
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee------cCceeEEecChhhhhhhhh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d------k~~gfV~f~~~~~adkai~ 197 (298)
..+++|||+| .++++++|+++|++||.|..|.|+.+ +++|||+|.+.++|.+|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 148 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 148 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Confidence 3457899999 89999999999999999999999876 5789999999999999994
No 205
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.62 E-value=5e-08 Score=87.86 Aligned_cols=55 Identities=33% Similarity=0.571 Sum_probs=50.9
Q ss_pred CCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeee-----cCceeEEecChhhhhhhhhc
Q psy15187 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE-----KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 144 ~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~d-----k~~gfV~f~~~~~adkai~~ 198 (298)
++++|||+| +.+|+++|+++|+.||.|..|.|+.+ +++|||+|.+.++|.+||..
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 357999999 99999999999999999999999988 78999999999999999944
No 206
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.59 E-value=5.6e-08 Score=83.07 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=50.8
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccC-CeeEEEEee-ecCceeEEecChhhhhhhhh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFG-KICSVSMEV-EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG-~I~~v~i~~-dk~~gfV~f~~~~~adkai~ 197 (298)
.++++|||+| ..+++++|+++|++|| .|..|.|+. ++++|||+|.+.++|.+|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALI 176 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHH
Confidence 4568999999 8999999999999999 999999965 58999999999999999994
No 207
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.57 E-value=8.1e-08 Score=84.72 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=50.8
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccC-CeeEEEEee-ecCceeEEecChhhhhhhhh
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFG-KICSVSMEV-EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG-~I~~v~i~~-dk~~gfV~f~~~~~adkai~ 197 (298)
.++++|||+| .++++++|+++|++|| .|..|.|+. ++++|||+|.+.++|.+|+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHH
Confidence 4568999999 8999999999999999 999999955 79999999999999999994
No 208
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.36 E-value=3.2e-07 Score=76.53 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=47.4
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEe--eecCceeEEecChhhhhhhhhc
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSME--VEKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~--~dk~~gfV~f~~~~~adkai~~ 198 (298)
...++|||+| +++++++|+++|++||.|..+ .. ..+++|||+|.+.++|.+|+..
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 3457999999 899999999999999999887 22 2278999999999999999964
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00019 Score=57.13 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=59.3
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhcc-----CCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHH
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIF-----GKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAI 217 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~f-----G~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai 217 (298)
..+|-+-| -.++...++.+...| |.|..|.+..|.+. |+|+|.+...|-+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G---------------------Aivef~d~~~AgKas 79 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG---------------------AIIIFRDSKFAAKML 79 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE---------------------EEEECSCHHHHHHHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc---------------------eEEEEccchhhHHHH
Confidence 35788889 778899999999999 99999988887654 556666666999999
Q ss_pred HHhCCcEECCeEEEEEEc
Q psy15187 218 TEVNGTHVQGVKLKVSLA 235 (298)
Q Consensus 218 ~~lnG~~i~Gr~L~V~~A 235 (298)
-+|||..|+|++|+|.-.
T Consensus 80 LaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 80 MILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHSSEEETTEEEEEECH
T ss_pred hhcCCeeecCeEEEecCH
Confidence 999999999999999654
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.0024 Score=50.21 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=55.7
Q ss_pred cEEEEcC------CCCCH-HHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHH
Q psy15187 146 NTIFVQG------AGISE-EFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAIT 218 (298)
Q Consensus 146 ~tLfVgn------~~~te-~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~ 218 (298)
++|+|.| ..-.. +.++++|..|+++......+.-.. ..|.|.+.++|.+|-.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRR---------------------irv~F~~~~~A~~AR~ 64 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKR---------------------VRINFSNPLSAADARL 64 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTE---------------------EEEECSSTTHHHHHHH
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceE---------------------EEEEeCChHHHHHHHH
Confidence 6899999 12222 578999999999998766544333 4556666669999999
Q ss_pred HhCCcEECCeEEEEEEccc
Q psy15187 219 EVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 219 ~lnG~~i~Gr~L~V~~A~~ 237 (298)
.|+|..++|..|+|-++.+
T Consensus 65 ~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 65 RLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp TSTTSEETTEECEEECCCC
T ss_pred HhccceecCceeEEEecCC
Confidence 9999999999999999984
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.23 E-value=0.013 Score=47.08 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=54.7
Q ss_pred CCcEEEEcC-CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 144 GGNTIFVQG-AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 144 ~~~tLfVgn-~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
..+-|-|-| ..-.-..+-.+|++||.|++... ..+..+ -.|.|.+..+|++||. .||
T Consensus 23 ~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~--~~~~NW-------------------ihI~Y~s~~~A~rAL~-kNG 80 (119)
T 1wwh_A 23 DDTWVTVFGFPQASASYILLQFAQYGNILKHVM--SNTGNW-------------------MHIRYQSKLQARKALS-KDG 80 (119)
T ss_dssp GGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEE--CSSSSE-------------------EEEEESSHHHHHHHHT-TTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhCcEEEecc--CCCCCe-------------------EEEEeCCHHHHHHHHH-hCC
Confidence 346788889 55667888999999999999765 233333 6778888889999997 599
Q ss_pred cEECC-eEEEEEEcc
Q psy15187 223 THVQG-VKLKVSLAR 236 (298)
Q Consensus 223 ~~i~G-r~L~V~~A~ 236 (298)
..|+| ..|-|....
T Consensus 81 ~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 81 RIFGESIMIGVKPCI 95 (119)
T ss_dssp CEETTTEECEEEECC
T ss_pred eEecCCEEEEEEECC
Confidence 99984 677776654
No 212
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.83 E-value=0.0034 Score=51.18 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=36.4
Q ss_pred CCceEEEEeCCHHHHHHHHHHh-CCcEECCeEEEEEEccccc
Q psy15187 199 DCARGFVTFDSPESSDKAITEV-NGTHVQGVKLKVSLARRQL 239 (298)
Q Consensus 199 skGfaFV~F~~~e~A~~Ai~~l-nG~~i~Gr~L~V~~A~~k~ 239 (298)
.+|+++|+|.+.++|++|+..| ||..++| .|.+.++..+.
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~ 52 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTF 52 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEE
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcc
Confidence 5788999999999999999999 9999999 99999887643
No 213
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.34 E-value=0.018 Score=47.02 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=56.0
Q ss_pred cEEEEcC-CCCCHHHHHHHHhccCCeeEEE-EeeecCceeEEecChhhhhhhhh----cCCceEEEEeCCHHHHHHHHHH
Q psy15187 146 NTIFVQG-AGISEEFLRQHFSIFGKICSVS-MEVEKGRGFVTFDSPESSDKAIT----DDCARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 146 ~tLfVgn-~~~te~~L~~~F~~fG~I~~v~-i~~dk~~gfV~f~~~~~adkai~----~skGfaFV~F~~~e~A~~Ai~~ 219 (298)
+-|.|-| .......+-++|++||.|++-. +..+.. . .+.. ..+... ...++--|+|.+..+|.+|+.
T Consensus 8 ~~VtVFGFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~-~----~~~~-~~~~k~yP~f~g~NWikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 8 LAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQ-A----MTVG-LQDRQFVPIFSGNSWTKITYDNPASAVDALL- 80 (132)
T ss_dssp CEEEEECCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------------CCCCCEETTEEEEEBSSHHHHHHHHT-
T ss_pred eEEEEEecCHHHHHHHHHHHHhhceEeeecccccccc-c----cccc-cccccccCccCCCcEEEEEcCCHHHHHHHHH-
Confidence 5677889 7777888899999999998732 111000 0 0000 000000 124567899999999999987
Q ss_pred hCCcEECCeEEEEEEccc
Q psy15187 220 VNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 220 lnG~~i~Gr~L~V~~A~~ 237 (298)
.||..|+|..|-|....+
T Consensus 81 ~NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 81 ENGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TTTCEETTEECEEEECCH
T ss_pred hCCeEeCcEEEEEEECCH
Confidence 699999999888877653
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.83 E-value=0.016 Score=56.71 Aligned_cols=50 Identities=26% Similarity=0.256 Sum_probs=33.0
Q ss_pred cEEEEcC-CCCCHHHHHHHHhccCCeeEEEEeeecC-ceeEEecChhhhhhh
Q psy15187 146 NTIFVQG-AGISEEFLRQHFSIFGKICSVSMEVEKG-RGFVTFDSPESSDKA 195 (298)
Q Consensus 146 ~tLfVgn-~~~te~~L~~~F~~fG~I~~v~i~~dk~-~gfV~f~~~~~adka 195 (298)
..|||.. ..+++.+|.++|++||+|.++.+..++| ++.|+|.+.++++.+
T Consensus 54 rsv~v~~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 54 RTVLIHCPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSL 105 (464)
T ss_dssp TEEEEEECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHH
Confidence 4799998 9999999999999999999988776544 344444444444433
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.38 E-value=0.17 Score=39.56 Aligned_cols=71 Identities=23% Similarity=0.388 Sum_probs=52.0
Q ss_pred CCCcEEEEcC--CCCCHHHHHHHHhcc-----CCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHH
Q psy15187 143 KGGNTIFVQG--AGISEEFLRQHFSIF-----GKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDK 215 (298)
Q Consensus 143 ~~~~tLfVgn--~~~te~~L~~~F~~f-----G~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~ 215 (298)
..+++|.|.| ..+.++.|.-+|+.- |+|..+.... +. |+|+|.+.+.|+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~---------------------AvItF~d~~va~r 62 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CG---------------------GVLTFREPADAER 62 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TE---------------------EEEEESSHHHHHH
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--Cc---------------------EEEEEcChHHHHH
Confidence 3457999999 899999999999972 6888876543 33 5666666668877
Q ss_pred HHHHhCCcEECCeEEEEEEccc
Q psy15187 216 AITEVNGTHVQGVKLKVSLARR 237 (298)
Q Consensus 216 Ai~~lnG~~i~Gr~L~V~~A~~ 237 (298)
.++ -.-+.|+|..|.|.-..+
T Consensus 63 VL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 63 VLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp HHT-CSCCBSSSSBCEEEECCC
T ss_pred Hhc-CCcceecCeEEEEEcCCC
Confidence 655 235788888898866444
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.92 E-value=0.023 Score=46.32 Aligned_cols=26 Identities=4% Similarity=-0.024 Sum_probs=23.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHhCCcE
Q psy15187 199 DCARGFVTFDSPESSDKAITEVNGTH 224 (298)
Q Consensus 199 skGfaFV~F~~~e~A~~Ai~~lnG~~ 224 (298)
++|||||+|.+.++|++|+..+++..
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccC
Confidence 57889999999999999999988643
No 217
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.30 E-value=0.51 Score=35.92 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=50.3
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
++|-|.+ +.+||+++.+.++.++.+........+... + ...-+-|+|.|.+.+++..-...++|+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~-----------~--~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL-----------Y--PHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS-----------T--TCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC-----------C--CCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 5789999 999999999999999876554443321100 0 012234899999999999999999999
Q ss_pred EEC
Q psy15187 224 HVQ 226 (298)
Q Consensus 224 ~i~ 226 (298)
.+.
T Consensus 69 ~F~ 71 (91)
T 1uw4_A 69 VFL 71 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 218
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.01 E-value=0.29 Score=37.98 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=36.4
Q ss_pred cEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHh
Q psy15187 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 146 ~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~l 220 (298)
.-++| + ..+...||.++|+.||.| .|..+-| -. |||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-Ts---------------------Alvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-TS---------------------AFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-TE---------------------EEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-Ce---------------------EEEEecCHHHHHHHHHhc
Confidence 34666 7 899999999999999954 3444433 22 667777777888777765
No 219
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.18 E-value=0.29 Score=38.00 Aligned_cols=50 Identities=28% Similarity=0.384 Sum_probs=34.8
Q ss_pred EEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 148 LfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
++| + ..+...||.++|+.||.| .|..+-| .. |||.|.+++.|..|+..++
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-Ts---------------------Alvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-TS---------------------AFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-TE---------------------EEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-Ce---------------------EEEEecCHHHHHHHHHhcc
Confidence 455 7 889999999999999943 4444433 33 5566666668888777664
No 220
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=85.80 E-value=0.86 Score=35.28 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=33.4
Q ss_pred ecCceeEEecChhhhhhhhhcCC----c-eEEEEeCCHHHHHHHHHHhC
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDC----A-RGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~sk----G-faFV~F~~~e~A~~Ai~~ln 221 (298)
.+++|||+|.+.++|++||..+. | +-.|.+.+..+...++....
T Consensus 60 ~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~~~~~~~~~~ 108 (118)
T 2db1_A 60 QSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSG 108 (118)
T ss_dssp EEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHHHHHHHHHTTS
T ss_pred CCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHHHHHHHHHHhC
Confidence 47999999999999999996321 1 34688888888777766443
No 221
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=85.72 E-value=0.58 Score=34.53 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.1
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+|+|||+|.+.++|++||..
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CSSEEEEECSSHHHHHHHHHT
T ss_pred cCceEEEEecCHHHHHHHHHh
Confidence 489999999999999999954
No 222
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.16 E-value=0.79 Score=34.80 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=30.2
Q ss_pred HHHHHHhccCCe-eEEEEeee--cCceeEEecChhhhhhhhhc
Q psy15187 159 FLRQHFSIFGKI-CSVSMEVE--KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 159 ~L~~~F~~fG~I-~~v~i~~d--k~~gfV~f~~~~~adkai~~ 198 (298)
+|..-|+..-.| ..+.++.. +++|||+|.+.++|++||..
T Consensus 44 ~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 44 SLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp HHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH
T ss_pred HHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH
Confidence 455667776444 56666644 69999999999999999954
No 223
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.02 E-value=1.5 Score=33.43 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=31.7
Q ss_pred ecCceeEEecChhhhhhhhhcCCc------eEEEEeCCHHHHHHHHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA------RGFVTFDSPESSDKAIT 218 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG------faFV~F~~~e~A~~Ai~ 218 (298)
.+++|||+|.+.++|++||.. .| .-.|.+....+...+..
T Consensus 56 ~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~~~~~~ 101 (114)
T 2cpy_A 56 GLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLEDMREIEK 101 (114)
T ss_dssp CSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHHHHHHHh
Confidence 479999999999999999966 33 34688888887666543
No 224
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.82 E-value=0.96 Score=35.10 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=32.6
Q ss_pred cCceeEEecChhhhhhhhhcC-----CceEEEEeCCHHHHHHHHHHh
Q psy15187 179 KGRGFVTFDSPESSDKAITDD-----CARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 179 k~~gfV~f~~~~~adkai~~s-----kGfaFV~F~~~e~A~~Ai~~l 220 (298)
+++|||+|.+.++|++||..+ --.-.|.+....+...++..+
T Consensus 67 ~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~~~~~~~~~ 113 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMI 113 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHHHHHHHHHH
T ss_pred CeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHHHHHHHHHH
Confidence 789999999999999999531 114678898888876666554
No 225
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.46 E-value=0.62 Score=35.64 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.4
Q ss_pred CceeEEecChhhhhhhhhcCC
Q psy15187 180 GRGFVTFDSPESSDKAITDDC 200 (298)
Q Consensus 180 ~~gfV~f~~~~~adkai~~sk 200 (298)
++|||+|.+.++|+.||....
T Consensus 55 GfaFVeF~~~~~A~~Ai~~~~ 75 (100)
T 2d9o_A 55 GTAVVEFATVKAAELAVQNEV 75 (100)
T ss_dssp SEEEEEESCHHHHHHHHHTCC
T ss_pred CEEEEEECCHHHHHHHHHhcC
Confidence 689999999999999996633
No 226
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=83.44 E-value=0.45 Score=35.86 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.3
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+|+|||+|.+.++|++||.
T Consensus 52 srG~aFV~f~~~~~A~~Ai~ 71 (95)
T 2lkz_A 52 NRGFAFVQLSSAMDASQLLQ 71 (95)
T ss_dssp CSSEEEEECSSSHHHHHHHH
T ss_pred CceEeEEEECCHHHHHHHHH
Confidence 48999999999999999994
No 227
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=83.43 E-value=0.51 Score=33.71 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.9
Q ss_pred ecCceeEEecChhhhhhhhhcCC
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDC 200 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~sk 200 (298)
.+++|||+|.+.++|++||..--
T Consensus 46 ~~g~afV~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 46 TKGYIFLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp CCCEEEEEESSHHHHHHHHTTSS
T ss_pred EeEEEEEEECCHHHHHHHHHHhc
Confidence 47999999999999999996533
No 228
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.63 E-value=0.66 Score=35.34 Aligned_cols=20 Identities=50% Similarity=0.571 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+|+|||+|.+.++|++||.
T Consensus 51 ~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 51 FKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp CCCEEEEEESSHHHHHHHHT
T ss_pred CccEEEEEECCHHHHHHHHH
Confidence 48999999999999999996
No 229
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=81.36 E-value=1.3 Score=35.55 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=32.3
Q ss_pred ecCceeEEecChhhhhhhhhcC-----CceEEEEeCCHHHHHHHHHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDD-----CARGFVTFDSPESSDKAITE 219 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~s-----kGfaFV~F~~~e~A~~Ai~~ 219 (298)
.+++|||+|.+.++|++||..+ --.--|.+.+..+...++..
T Consensus 87 srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~e~~~~~~~ 133 (136)
T 2hgl_A 87 QSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH 133 (136)
T ss_dssp EEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHHHHHHHHTT
T ss_pred CCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChHHHHHHHhh
Confidence 4799999999999999999621 11456888888887776643
No 230
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.28 E-value=0.96 Score=33.05 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.4
Q ss_pred ecCceeEEecChhhhhhhhhcC
Q psy15187 178 EKGRGFVTFDSPESSDKAITDD 199 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~s 199 (298)
.+++|||+|.+.++|++||..-
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l 68 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAIEAM 68 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHHHTT
T ss_pred cCeEEEEEECCHHHHHHHHHHc
Confidence 4799999999999999999643
No 231
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=80.77 E-value=4.1 Score=31.24 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=49.6
Q ss_pred CcEEEEcC--CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCC
Q psy15187 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNG 222 (298)
Q Consensus 145 ~~tLfVgn--~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG 222 (298)
+-+|-|.. +.+||+++.+.++.+-.+........ . ...+...-+| |+|.|.+.++...-...++|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G--------~---~s~~~~~~SR--AYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAA--------D---LSLYPHLYSR--AYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCC--------C---SSSCCSCCCC--CEEEESCHHHHHHHHHHSTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCC--------c---cCCCCCcceE--EEEEeCCHHHHHHHHHHcCC
Confidence 35899999 99999998877776544321111110 0 0001111133 89999999999999999999
Q ss_pred cEECC-----eEEEEEEcc
Q psy15187 223 THVQG-----VKLKVSLAR 236 (298)
Q Consensus 223 ~~i~G-----r~L~V~~A~ 236 (298)
+.+-+ .+-.|++|.
T Consensus 76 ~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 76 YIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp EEEECTTCCEEEEEEEECC
T ss_pred cEEEeCCCCEeeeEEEecC
Confidence 98862 244555554
No 232
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=80.52 E-value=0.59 Score=35.99 Aligned_cols=21 Identities=43% Similarity=0.855 Sum_probs=18.9
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 44 ~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 44 SKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEEEEEEEESCHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHH
Confidence 479999999999999999954
No 233
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=80.23 E-value=0.8 Score=34.29 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=18.5
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+|+|||+|.+.++|++||.
T Consensus 53 ~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 53 TKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp ECSEEEEEESSHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHH
Confidence 48999999999999999994
No 234
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=80.23 E-value=0.68 Score=36.88 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=25.1
Q ss_pred eecCceeEEecChhhhhhhhhcCCc------eEEEEeCCH
Q psy15187 177 VEKGRGFVTFDSPESSDKAITDDCA------RGFVTFDSP 210 (298)
Q Consensus 177 ~dk~~gfV~f~~~~~adkai~~skG------faFV~F~~~ 210 (298)
..+|+|||+|.+.++|+.||..--| --.|.|...
T Consensus 70 ~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 70 DNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp SSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred CcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 4689999999999999999944222 225666654
No 235
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=80.22 E-value=1.1 Score=33.21 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=22.3
Q ss_pred eeEEEEeeecCceeEEecChhhhhhhhh
Q psy15187 170 ICSVSMEVEKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 170 I~~v~i~~dk~~gfV~f~~~~~adkai~ 197 (298)
|.....-..+++|||+|.+.++|++||.
T Consensus 49 ~~~~~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 49 VVDVRTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp CCEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EecCCCCCcCcEEEEEECCHHHHHHHHh
Confidence 3444444558999999999999999995
No 236
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.15 E-value=1.1 Score=35.48 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=31.9
Q ss_pred ecCceeEEecChhhhhhhhhcCCc-----eEEEEeCCHHHHHHHHHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA-----RGFVTFDSPESSDKAITE 219 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG-----faFV~F~~~e~A~~Ai~~ 219 (298)
.+++|||+|.+.++|++||..+.. +--|...+..+...++..
T Consensus 67 ~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~e~~~~~~~ 113 (123)
T 2dha_A 67 PTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 113 (123)
T ss_dssp EEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHHHHHHHHHH
T ss_pred EeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHHHHHHHHHh
Confidence 479999999999999999965211 344667788888777655
No 237
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.08 E-value=1.1 Score=33.29 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.4
Q ss_pred ecCceeEEecChhhhhhhhhcC
Q psy15187 178 EKGRGFVTFDSPESSDKAITDD 199 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~s 199 (298)
.+++|||+|.+.++|++||..-
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l 73 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSC 73 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHT
T ss_pred EeeEEEEEECCHHHHHHHHHHh
Confidence 4799999999999999999643
No 238
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=79.84 E-value=0.92 Score=36.02 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=22.7
Q ss_pred eeEEEEeee---cCceeEEecChhhhhhhhhc
Q psy15187 170 ICSVSMEVE---KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 170 I~~v~i~~d---k~~gfV~f~~~~~adkai~~ 198 (298)
|.+|.+... +++|||+|.+.++|++||..
T Consensus 80 ~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 111 (143)
T 3egn_A 80 MFDIRLMKEGRMKGQAFIGLPNEKAAAKALKE 111 (143)
T ss_dssp HCEEEEEEETTTEEEEEEECSSHHHHHHHHHH
T ss_pred eeeEEeccCCCcccEEEEEeCCHHHHHHHHHH
Confidence 345555533 78999999999999999954
No 239
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=79.83 E-value=0.52 Score=34.42 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=17.3
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+|+|||+|.+.++|++||.
T Consensus 44 ~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 44 SKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp EEEEEEECC-CHHHHHHHHH
T ss_pred cCcEEEEEECCHHHHHHHHH
Confidence 47999999999999999994
No 240
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.73 E-value=0.92 Score=33.53 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=18.3
Q ss_pred cCceeEEecChhhhhhhhhc
Q psy15187 179 KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 179 k~~gfV~f~~~~~adkai~~ 198 (298)
+++|||+|.+.++|++||..
T Consensus 52 rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHH
T ss_pred CeEEEEEECCHHHHHHHHHH
Confidence 78999999999999999954
No 241
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=79.71 E-value=1.7 Score=32.76 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=32.5
Q ss_pred ecCceeEEecChhhhhhhhhcCC-----ceEEEEeCCHHHHHHHHHHh
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDC-----ARGFVTFDSPESSDKAITEV 220 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~sk-----GfaFV~F~~~e~A~~Ai~~l 220 (298)
.+|+|||+|.+.++|++||..+. -+--|.+.+..+...++...
T Consensus 54 ~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~~~~~~~~~ 101 (107)
T 2lmi_A 54 RRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 101 (107)
T ss_dssp TCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHHHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHHHHHHHHHhh
Confidence 47999999999999999995321 13467788888877776543
No 242
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=79.67 E-value=0.78 Score=31.89 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.1
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHTT
T ss_pred cCCEEEEEECCHHHHHHHHHh
Confidence 479999999999999999964
No 243
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=79.52 E-value=0.65 Score=34.93 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+|+|||+|.+.++|++||..
T Consensus 60 ~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 60 SLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred ccccEEEEECCHHHHHHHHHH
Confidence 378999999999999999954
No 244
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.41 E-value=1.2 Score=34.14 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=30.9
Q ss_pred ecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc--------EECCeEEEEEEccc
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT--------HVQGVKLKVSLARR 237 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~--------~i~Gr~L~V~~A~~ 237 (298)
.+++|||+|.+.++|++||.. +..+||. .+.++.+.|.....
T Consensus 51 ~~G~aFV~f~~~~~a~~Ai~~------------------~~~~~G~~~~~~~~~~~~~~~~~v~p~~~ 100 (114)
T 2dnl_A 51 PKGYAFLLFQEESSVQALIDA------------------CLEEDGKLYLCVSSPTIKDKPVQIRPWNL 100 (114)
T ss_dssp TTSEEEECCSSHHHHHHHHHH------------------SEEETTEEEEEECCSSSCSEEEEEECCCC
T ss_pred cccEEEEEECCHHHHHHHHHh------------------hhhcCCcEEEeccCCCcCCCeeeccCCcc
Confidence 489999999999999988853 2345666 45578888865443
No 245
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=79.28 E-value=0.81 Score=34.52 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.0
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+|+|||+|.+.++|++||..
T Consensus 60 ~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 60 TKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp SCCEEEEEECSSSHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHHHH
Confidence 479999999999999999964
No 246
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.17 E-value=0.83 Score=35.30 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=25.7
Q ss_pred ecCceeEEecChhhhhhhhhcCC----c-eEEEEeCCHHHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDC----A-RGFVTFDSPESS 213 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~sk----G-faFV~F~~~e~A 213 (298)
.+|+|||+|.+.++|++||..+. | +-.|...+..+-
T Consensus 55 ~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~~ 95 (109)
T 2dnn_A 55 NNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQW 95 (109)
T ss_dssp CCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHHHH
T ss_pred CCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCccch
Confidence 47999999999999999994321 1 345666655543
No 247
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.90 E-value=0.84 Score=34.78 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 62 ~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 62 PSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp CCEEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEEECcHHHHHHHHHH
Confidence 368999999999999999954
No 248
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.54 E-value=0.96 Score=34.01 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.2
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 56 STGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp BCSEEEEEESSHHHHHHHHTT
T ss_pred cceEEEEEECCHHHHHHHHHh
Confidence 479999999999999999965
No 249
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=78.50 E-value=1 Score=33.00 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=19.3
Q ss_pred ecCceeEEecChhhhhhhhhcC
Q psy15187 178 EKGRGFVTFDSPESSDKAITDD 199 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~s 199 (298)
.+++|||+|.+.++|++|+..-
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~l 73 (96)
T 1fjc_A 52 SKGIAYIEFKSEADAEKNLEEK 73 (96)
T ss_dssp EEEEEEEEESSHHHHHHHHHHT
T ss_pred cceEEEEEECCHHHHHHHHHHh
Confidence 4789999999999999999643
No 250
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.11 E-value=1.1 Score=32.05 Aligned_cols=20 Identities=60% Similarity=0.966 Sum_probs=18.2
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++|+.
T Consensus 46 ~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 46 CKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CCSEEEEEESCHHHHHHHHH
T ss_pred cCcEEEEEECCHHHHHHHHH
Confidence 47899999999999999994
No 251
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.09 E-value=1.4 Score=33.55 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.3
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 68 ~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 68 SRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp CCSEEEEECSSHHHHHHHHTS
T ss_pred cCceEEEEeCCHHHHHHHHHh
Confidence 478999999999999999976
No 252
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=78.07 E-value=0.98 Score=31.43 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=18.3
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++|+.
T Consensus 40 ~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 40 HRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp SCBEEEEECSCHHHHHHHHS
T ss_pred cCcEEEEEECCHHHHHHHHH
Confidence 47899999999999999985
No 253
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.05 E-value=0.96 Score=33.77 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=19.1
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 57 ~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 57 SRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp EEEEEEEEESSTTHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHh
Confidence 478999999999999999965
No 254
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.82 E-value=1.5 Score=31.82 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.2
Q ss_pred ecCceeEEecChhhhhhhhhcC
Q psy15187 178 EKGRGFVTFDSPESSDKAITDD 199 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~s 199 (298)
.+++|||+|.+.++|++|+..-
T Consensus 57 ~~g~afV~f~~~~~A~~A~~~l 78 (94)
T 2e5h_A 57 SKGVAFILFLDKDSAQNCTRAI 78 (94)
T ss_dssp CTTCEEEEESCHHHHHHHHHHT
T ss_pred cccEEEEEECCHHHHHHHHHHc
Confidence 3789999999999999999543
No 255
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=77.72 E-value=1 Score=33.05 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 43 ~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 43 SKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp BCSEEEEEESSHHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 479999999999999999953
No 256
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=77.59 E-value=1 Score=34.08 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=25.9
Q ss_pred cCceeEEecChhhhhhhhhcC-----Cce-EEEEeCCHHHHHH
Q psy15187 179 KGRGFVTFDSPESSDKAITDD-----CAR-GFVTFDSPESSDK 215 (298)
Q Consensus 179 k~~gfV~f~~~~~adkai~~s-----kGf-aFV~F~~~e~A~~ 215 (298)
+|+|||+|.+.++|++||..- .|- --|.|++..+...
T Consensus 43 kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~~~~ 85 (89)
T 2wbr_A 43 QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQS 85 (89)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHHHHH
Confidence 058999999999999999432 121 3577777666544
No 257
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=77.46 E-value=0.98 Score=36.02 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.1
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+|+|||+|.+.++|++||..
T Consensus 83 srGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 83 ITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SCSEEEEEESSTTHHHHHHTT
T ss_pred CceEEEEEECCHHHHHHHHHH
Confidence 479999999999999999954
No 258
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=77.43 E-value=0.82 Score=35.18 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=26.1
Q ss_pred ecCceeEEecChhhhhhhhhcCC-----c-eEEEEeCCHHHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDC-----A-RGFVTFDSPESS 213 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~sk-----G-faFV~F~~~e~A 213 (298)
.+++|||+|.+.++|++||..-- | --.|.|+.....
T Consensus 47 ~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~ 88 (110)
T 3s8s_A 47 HLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQ 88 (110)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTHH
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcH
Confidence 47999999999999999994322 2 235777765443
No 259
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=77.05 E-value=1.2 Score=33.18 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=17.9
Q ss_pred ecCceeEEecChhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai 196 (298)
.+|+|||+|.+.++|++||
T Consensus 60 ~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 60 LKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp CCSCEEEEECCHHHHHHHH
T ss_pred cCeEEEEEECCHHHHHHHH
Confidence 4799999999999999999
No 260
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.00 E-value=1.1 Score=32.86 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHHHH
Confidence 378999999999999999954
No 261
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=76.87 E-value=1.2 Score=31.89 Aligned_cols=21 Identities=33% Similarity=0.808 Sum_probs=19.0
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEEecHHHHHHHHHH
Confidence 589999999999999999953
No 262
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=76.84 E-value=1.2 Score=33.98 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.1
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 66 ~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 66 SRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp CTTCEEEEESSHHHHHHHHHS
T ss_pred cCcEEEEEECCHHHHHHHHHH
Confidence 489999999999999999964
No 263
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.71 E-value=1.2 Score=32.87 Aligned_cols=20 Identities=40% Similarity=0.826 Sum_probs=18.4
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 51 ~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 51 PRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHH
Confidence 47999999999999999995
No 264
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.65 E-value=0.95 Score=31.55 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=18.9
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 41 ~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 41 SRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp CSSEEEECCCCTTHHHHHHHT
T ss_pred cCceEEEEEcCHHHHHHHHHh
Confidence 479999999999999999953
No 265
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.52 E-value=1.2 Score=33.10 Aligned_cols=21 Identities=48% Similarity=0.616 Sum_probs=18.9
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 56 HQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp BCSCEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHH
Confidence 479999999999999999954
No 266
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.45 E-value=1.4 Score=31.98 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.5
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 49 ~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 49 KTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp EEEEEEEECSSHHHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHHH
Confidence 37899999999999999997
No 267
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.42 E-value=1.4 Score=33.51 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=17.9
Q ss_pred ecCceeEEecChhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai 196 (298)
.+++|||+|.+.++|++||
T Consensus 66 ~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 66 SKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp CCCCEEEEESCGGGHHHHH
T ss_pred cCcEEEEEeCcHHHHHHHH
Confidence 4799999999999999999
No 268
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=76.42 E-value=1.2 Score=31.61 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 48 ~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 48 HRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp ECSEEEEEESSHHHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHHHH
Confidence 479999999999999999943
No 269
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.32 E-value=1.1 Score=33.84 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHHHH
Confidence 378999999999999999953
No 270
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.22 E-value=1.3 Score=32.86 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAAALAA 74 (103)
T ss_dssp SCCEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHH
Confidence 478999999999999999953
No 271
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=76.20 E-value=0.95 Score=34.53 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.9
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+|+|||+|.+.++|++|+..
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~ 87 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVID 87 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHH
T ss_pred ccEEEEEEECCHHHHHHHHHH
Confidence 479999999999999999954
No 272
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.18 E-value=1.2 Score=33.35 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.1
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 51 ~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 51 NRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp TCCEEEEEESSHHHHHHHHTT
T ss_pred cCcEEEEEecCHHHHHHHHHH
Confidence 479999999999999999964
No 273
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.17 E-value=1.2 Score=33.13 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 57 HRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp SCSEEEEEESSHHHHHHHHHH
T ss_pred cCceEEEEECCHHHHHHHHHH
Confidence 478999999999999999953
No 274
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.09 E-value=1.2 Score=32.69 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 49 PKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHH
T ss_pred cCeEEEEEECCHHHHHHHHHH
Confidence 478999999999999999943
No 275
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.96 E-value=1.2 Score=32.64 Aligned_cols=22 Identities=36% Similarity=0.748 Sum_probs=19.6
Q ss_pred eecCceeEEecChhhhhhhhhc
Q psy15187 177 VEKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 177 ~dk~~gfV~f~~~~~adkai~~ 198 (298)
..+++|||+|.+.++|++||..
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHH
T ss_pred CcccEEEEEECCHHHHHHHHHH
Confidence 4589999999999999999964
No 276
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=75.93 E-value=1.2 Score=33.81 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 56 SKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 378999999999999999954
No 277
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=75.91 E-value=1.3 Score=32.45 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.3
Q ss_pred eecCceeEEecChhhhhhhhhc
Q psy15187 177 VEKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 177 ~dk~~gfV~f~~~~~adkai~~ 198 (298)
..+++|||+|.+.++|++|+..
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 49 KMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp HHTTCEEEEESSHHHHHHHHHH
T ss_pred CcCcEEEEEeCCHHHHHHHHHH
Confidence 3578999999999999999953
No 278
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.84 E-value=1.1 Score=33.11 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 479999999999999999953
No 279
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.84 E-value=0.86 Score=34.43 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 54 ~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 54 VTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp EEEEEEEECSSSHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHHh
Confidence 478999999999999999943
No 280
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=75.76 E-value=0.99 Score=32.38 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=19.0
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 52 SRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEEEEEEEESSTHHHHHHHHS
T ss_pred cccEEEEEECCHHHHHHHHHh
Confidence 478999999999999999965
No 281
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=75.74 E-value=1.4 Score=31.49 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=17.8
Q ss_pred ecCceeEEecChhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai 196 (298)
.+++|||+|.+.++|++|+
T Consensus 47 ~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 47 PKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp CCEEEEEEESSTHHHHHHG
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3789999999999999999
No 282
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.66 E-value=1.3 Score=33.32 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.0
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 60 ~~g~afV~f~~~~~A~~A~~~ 80 (109)
T 1x4a_A 60 GPPFAFVEFEDPRDAEDAVYG 80 (109)
T ss_dssp SSCCEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHH
Confidence 589999999999999999943
No 283
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=75.59 E-value=1 Score=32.20 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 47 SKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 478999999999999999954
No 284
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.59 E-value=1.6 Score=32.54 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=17.9
Q ss_pred ecCceeEEecChhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai 196 (298)
.+++|||+|.+.++|++||
T Consensus 56 ~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 56 LKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp BCSCEEEEESSHHHHHHHH
T ss_pred cCeEEEEEECCHHHHHHHH
Confidence 4799999999999999999
No 285
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.49 E-value=1.3 Score=32.95 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 56 SKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHHHH
Confidence 368999999999999999964
No 286
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.44 E-value=0.94 Score=33.56 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEA 73 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHH
T ss_pred cCcEEEEEECCHHHHHHHHHH
Confidence 478999999999999999953
No 287
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.44 E-value=1.3 Score=33.20 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.9
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 56 SKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp BCSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEEECCHHHHHHHHHH
Confidence 479999999999999999954
No 288
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.35 E-value=1.4 Score=32.44 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.9
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 51 ~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 51 PAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp EEEEEEEECSCHHHHHHHHHT
T ss_pred cCCEEEEEeCCHHHHHHHHHH
Confidence 478999999999999999964
No 289
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=75.25 E-value=1.3 Score=36.39 Aligned_cols=35 Identities=20% Similarity=0.036 Sum_probs=27.0
Q ss_pred ecCceeEEecChhhhhhhhhcCCc------eEEEEeCCHHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA------RGFVTFDSPES 212 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG------faFV~F~~~e~ 212 (298)
.+|+|||+|.+.++|++||..-.| .-.|.|.....
T Consensus 98 skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 98 SKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQN 138 (156)
T ss_dssp EEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHHH
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCc
Confidence 479999999999999999955322 34678887654
No 290
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.95 E-value=1.2 Score=33.08 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.4
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 54 ~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 54 PRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp BCSCEEEEESSSSHHHHHHH
T ss_pred CCeEEEEEECCHHHHHHHHH
Confidence 47999999999999999995
No 291
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.94 E-value=1.4 Score=31.98 Aligned_cols=20 Identities=40% Similarity=0.801 Sum_probs=18.4
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 46 ~~g~afV~f~~~~~a~~A~~ 65 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRALE 65 (95)
T ss_dssp CCSEEEEEESCHHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHHH
Confidence 47899999999999999995
No 292
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.90 E-value=1.4 Score=32.75 Aligned_cols=21 Identities=43% Similarity=0.741 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 54 SKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp TCCEEEEEESCHHHHHHHHHH
T ss_pred CcEEEEEEECCHHHHHHHHHH
Confidence 378999999999999999953
No 293
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=74.89 E-value=1.4 Score=33.22 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 67 ~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 67 SKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp BCSEEEEEESSHHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 379999999999999999954
No 294
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=74.60 E-value=1.4 Score=32.76 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=18.3
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 54 ~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 54 HKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHH
Confidence 47999999999999999994
No 295
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=74.55 E-value=1.1 Score=31.59 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 42 ~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 42 SRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp EEEEEEEEESCHHHHHHHHHH
T ss_pred ccceEEEEECCHHHHHHHHHH
Confidence 378999999999999999954
No 296
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.34 E-value=1.5 Score=32.59 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=17.8
Q ss_pred ecCceeEEecChhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai 196 (298)
.+++|||+|.+.++|++||
T Consensus 55 ~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 55 FKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp EEEEEEEEESSHHHHHHHG
T ss_pred cceEEEEEECCHHHHHHHH
Confidence 3789999999999999999
No 297
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.31 E-value=1.2 Score=33.14 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 50 ~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 50 SKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp EEEEEEEEESCHHHHHHHHHH
T ss_pred ccceEEEEECCHHHHHHHHHH
Confidence 478999999999999999954
No 298
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.24 E-value=1.3 Score=33.72 Aligned_cols=21 Identities=43% Similarity=0.741 Sum_probs=19.0
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 68 ~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 68 SKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp CTTEEEEECCCSHHHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHHHH
Confidence 489999999999999999953
No 299
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.01 E-value=1.4 Score=32.53 Aligned_cols=20 Identities=35% Similarity=0.723 Sum_probs=18.2
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 53 ~~g~afV~f~~~~~A~~A~~ 72 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDAMM 72 (102)
T ss_dssp CCSEEEEECSSHHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHHH
Confidence 47899999999999999994
No 300
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.98 E-value=1.2 Score=33.12 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.0
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 56 SKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp EEEEEEEEESSHHHHHHHHHS
T ss_pred ccceEEEEECCHHHHHHHHHc
Confidence 478999999999999999974
No 301
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.82 E-value=1.3 Score=32.15 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++|+..
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 56 SRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHHHH
Confidence 468999999999999999954
No 302
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=73.69 E-value=1.4 Score=33.90 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 47 ~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 47 SRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp CCCEEEEECSSHHHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHHHH
Confidence 478999999999999999953
No 303
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=72.95 E-value=1.4 Score=33.74 Aligned_cols=34 Identities=29% Similarity=0.239 Sum_probs=25.1
Q ss_pred ecCceeEEecChhhhhhhhhcCCc------eEEEEeCCHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA------RGFVTFDSPE 211 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG------faFV~F~~~e 211 (298)
.+|+|||+|.+.++|++|+..--| --.|.|.+.+
T Consensus 55 ~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 55 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLD 94 (105)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred CcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHH
Confidence 479999999999999999943222 1256777654
No 304
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.92 E-value=1.2 Score=33.69 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.3
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 65 ~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 65 SRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp EEEEEEEEESCHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHH
Confidence 37899999999999999994
No 305
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.87 E-value=1.3 Score=32.67 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=18.5
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 57 PKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred EEeEEEEEECCHHHHHHHHHH
Confidence 368999999999999999943
No 306
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=72.79 E-value=1.3 Score=32.92 Aligned_cols=19 Identities=42% Similarity=0.614 Sum_probs=17.7
Q ss_pred cCceeEEecChhhhhhhhh
Q psy15187 179 KGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 179 k~~gfV~f~~~~~adkai~ 197 (298)
+++|||+|.+.++|++||.
T Consensus 56 ~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 56 KGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp EEEEEEEESSHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHH
Confidence 6899999999999999994
No 307
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=72.75 E-value=2.2 Score=33.23 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.2
Q ss_pred ecCceeEEecChhhhhhhhhcCCc
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA 201 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG 201 (298)
.+++|||+|.+.++|++|+..-.|
T Consensus 104 ~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 104 HRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp CCSEEEEEESCHHHHHHHHHHSTE
T ss_pred cCcEEEEEECCHHHHHHHHHHhCC
Confidence 479999999999999999964433
No 308
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=72.71 E-value=1.3 Score=32.73 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=18.2
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 62 ~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 62 LKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp EEEEEEEEBSSHHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHHH
Confidence 36899999999999999995
No 309
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=72.49 E-value=1.4 Score=31.90 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=18.3
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 47 ~~g~afV~f~~~~~a~~a~~ 66 (92)
T 2dgv_A 47 SKGCGVVKFESPEVAERACR 66 (92)
T ss_dssp EEEEEEEEESSHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHH
Confidence 47899999999999999995
No 310
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.45 E-value=1.7 Score=33.02 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=20.5
Q ss_pred ecCceeEEecChhhhhhhhhcCCc
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA 201 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG 201 (298)
.+++|||+|.+.++|++||....|
T Consensus 58 ~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 58 SRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp CCSEEEEEESSHHHHHHHHTCSSC
T ss_pred cceEEEEEECCHHHHHHHHHhCCC
Confidence 478999999999999999966443
No 311
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=72.21 E-value=1.4 Score=32.13 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 56 PTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred EeeEEEEEECCHHHHHHHHHH
Confidence 378999999999999999953
No 312
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=72.13 E-value=1.4 Score=32.79 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=18.2
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 64 ~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 64 LKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp EEEEEEEEESCHHHHHHHHH
T ss_pred eeeEEEEEECCHHHHHHHHH
Confidence 36899999999999999995
No 313
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=72.10 E-value=1.8 Score=32.87 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=20.2
Q ss_pred ecCceeEEecChhhhhhhhhcCCc
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA 201 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG 201 (298)
.+++|||+|.+.++|++||..--|
T Consensus 81 ~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 81 SKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp CCCEEEEEEESSHHHHHHHHHCCC
T ss_pred cCcEEEEEECCHHHHHHHHHHcCC
Confidence 479999999999999999965333
No 314
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.72 E-value=1.1 Score=33.15 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=29.4
Q ss_pred ecCceeEEecChhhhhhhhhcCCc------eEEEEeCCHHHHHHHHHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA------RGFVTFDSPESSDKAITE 219 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG------faFV~F~~~e~A~~Ai~~ 219 (298)
.+++|||+|.+.++|++|+..-.| .-.|.|............
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 96 (104)
T 1p1t_A 49 PKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 96 (104)
T ss_dssp EEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccchhhhcc
Confidence 478999999999999999953222 246777776555444433
No 315
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=71.35 E-value=1.4 Score=32.02 Aligned_cols=21 Identities=48% Similarity=0.596 Sum_probs=18.6
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 56 PKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp EEEEEEEEESSTHHHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHHHH
Confidence 378999999999999999953
No 316
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=71.28 E-value=1.6 Score=34.32 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=26.9
Q ss_pred HHHHHHhccCCeeEEEEe---eecCceeEEecChhhhhhhhhc
Q psy15187 159 FLRQHFSIFGKICSVSME---VEKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 159 ~L~~~F~~fG~I~~v~i~---~dk~~gfV~f~~~~~adkai~~ 198 (298)
+|..-|+..-.|.-+.-. ..+++|||+|.+.++|++||..
T Consensus 61 ~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 61 QLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp HHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 344445544444444332 2479999999999999999954
No 317
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.20 E-value=1.5 Score=32.52 Aligned_cols=20 Identities=60% Similarity=0.944 Sum_probs=18.3
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 54 ~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 54 SKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp EEEEEEEEESSHHHHHHHHH
T ss_pred cCEEEEEEECCHHHHHHHHH
Confidence 47899999999999999995
No 318
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=70.88 E-value=2 Score=32.54 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=25.8
Q ss_pred ecCceeEEecChhhhhhhhhcCC------ceEEEEeCCHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDC------ARGFVTFDSPE 211 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~sk------GfaFV~F~~~e 211 (298)
.+++|||+|.+.++|++|+..-. ..-.|.|....
T Consensus 46 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 46 TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 38999999999999999995311 23468888753
No 319
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=70.76 E-value=1.9 Score=32.88 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=24.7
Q ss_pred ecCceeEEecChhhhhhhhhcCCce------EEEEeCCHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCAR------GFVTFDSPE 211 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skGf------aFV~F~~~e 211 (298)
.+|++||+|.+.++|.+|+..--|. -.|.|.+.+
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPD 97 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHH
Confidence 4799999999999999999442222 246666554
No 320
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=70.67 E-value=2 Score=33.88 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 87 ~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 87 SRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CCCEEEEEESCHHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 479999999999999999953
No 321
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=70.58 E-value=1.2 Score=33.04 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=18.6
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 47899999999999999997
No 322
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=70.49 E-value=5.3 Score=28.31 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=41.2
Q ss_pred EEEEcC---CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhCCc
Q psy15187 147 TIFVQG---AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGT 223 (298)
Q Consensus 147 tLfVgn---~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~lnG~ 223 (298)
+|||+. ..+...+|-.++..-+.|..- .-|-|... -.|.||+-.... |..++..|++.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~------~IG~I~i~------------d~~s~v~v~~~~-~~~~~~~l~~~ 62 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSAD------DIGIITIM------------DNASYVEILNGK-GPHVLKVMKNT 62 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGG------GEEEEEEC------------SSCEEEEECTTC-HHHHHHHHTTC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChh------hccEEEEe------------CCcEEEEECHHH-HHHHHHHhccc
Confidence 578875 788888888888876654321 11211111 123566665543 77889999999
Q ss_pred EECCeEEEEEEcc
Q psy15187 224 HVQGVKLKVSLAR 236 (298)
Q Consensus 224 ~i~Gr~L~V~~A~ 236 (298)
.+.|+.+.|..++
T Consensus 63 ~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 63 TVKGKQLKVNKAN 75 (76)
T ss_dssp CC---CCCEEECC
T ss_pred cCcCceEEEEECC
Confidence 9999999998764
No 323
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=70.48 E-value=2.1 Score=32.80 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=17.8
Q ss_pred ecCceeEEecChhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAI 196 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai 196 (298)
.+++|||+|.+.++|++||
T Consensus 77 ~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 77 PKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp CEEEEEEEESSHHHHHHHH
T ss_pred cccEEEEEECCHHHHHHHH
Confidence 3789999999999999999
No 324
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=70.29 E-value=2.1 Score=32.99 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=18.2
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 63 ~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 63 LKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp BCSCEEEEESSHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHH
Confidence 37899999999999999994
No 325
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=69.74 E-value=2 Score=31.88 Aligned_cols=17 Identities=47% Similarity=0.917 Sum_probs=15.6
Q ss_pred eeEEecChhhhhhhhhc
Q psy15187 182 GFVTFDSPESSDKAITD 198 (298)
Q Consensus 182 gfV~f~~~~~adkai~~ 198 (298)
|||+|.+.++|++|+..
T Consensus 60 afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 60 GFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEEEESSHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHH
Confidence 89999999999999954
No 326
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=69.62 E-value=1.5 Score=33.23 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=18.6
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 66 ~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 66 SKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp EEEEEEEECSSHHHHHHHHHH
T ss_pred cCccEEEEECCHHHHHHHHHH
Confidence 378999999999999999943
No 327
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.43 E-value=1.7 Score=32.84 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.2
Q ss_pred cCceeEEecChhhhhhhhhc
Q psy15187 179 KGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 179 k~~gfV~f~~~~~adkai~~ 198 (298)
+++|||+|.+.++|++||..
T Consensus 56 ~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 56 RGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp EEEEEEEESSHHHHHHHHHH
T ss_pred eeEEEEEECCHHHHHHHHHH
Confidence 68999999999999999953
No 328
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.86 E-value=1.4 Score=33.44 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=15.2
Q ss_pred eeEEecChhhhhhhhh
Q psy15187 182 GFVTFDSPESSDKAIT 197 (298)
Q Consensus 182 gfV~f~~~~~adkai~ 197 (298)
|||+|.+.++|++||.
T Consensus 54 aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 54 AFLELATEEAAITMVN 69 (101)
T ss_dssp EEEEESSHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHH
Confidence 9999999999999995
No 329
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=68.74 E-value=2.3 Score=32.75 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=18.4
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++|+.
T Consensus 75 ~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 75 SLGTADVHFERRADALKAMK 94 (124)
T ss_dssp CCSEEEEEESSHHHHHHHHH
T ss_pred EeeEEEEEECCHHHHHHHHH
Confidence 47999999999999999995
No 330
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.23 E-value=2.6 Score=31.01 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=15.6
Q ss_pred eeEEecChhhhhhhhhc
Q psy15187 182 GFVTFDSPESSDKAITD 198 (298)
Q Consensus 182 gfV~f~~~~~adkai~~ 198 (298)
|||+|.+.++|++||..
T Consensus 54 afV~f~~~~~A~~A~~~ 70 (99)
T 2cpd_A 54 AFVHFSNREDAVEAMKA 70 (99)
T ss_dssp EEEEESSHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHH
Confidence 89999999999999953
No 331
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.15 E-value=1.9 Score=33.06 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=16.0
Q ss_pred eeEEecChhhhhhhhhcC
Q psy15187 182 GFVTFDSPESSDKAITDD 199 (298)
Q Consensus 182 gfV~f~~~~~adkai~~s 199 (298)
|||.|.+.++|.+|+..-
T Consensus 49 AfV~F~~~esA~~A~~~l 66 (96)
T 2diu_A 49 AILRFINQDSAERAQKRM 66 (96)
T ss_dssp EEEEESSHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHh
Confidence 899999999999999543
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=68.04 E-value=1.7 Score=35.19 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=18.5
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 85 srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 85 VTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp SSCCCEEECSHHHHHHHHTT
T ss_pred CceEEEEEeCCHHHHHHHHh
Confidence 58999999999999999993
No 333
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.99 E-value=1.9 Score=31.25 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=16.0
Q ss_pred ceeEEecChhhhhhhhhc
Q psy15187 181 RGFVTFDSPESSDKAITD 198 (298)
Q Consensus 181 ~gfV~f~~~~~adkai~~ 198 (298)
+|||+|.+.++|++||..
T Consensus 46 ~afV~f~~~~~A~~A~~~ 63 (93)
T 2cqh_A 46 YAFVDYPDQNWAIRAIET 63 (93)
T ss_dssp EEEECCSCHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHH
Confidence 599999999999999953
No 334
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=67.79 E-value=2 Score=32.59 Aligned_cols=20 Identities=45% Similarity=0.823 Sum_probs=18.3
Q ss_pred ecCceeEEecChhhhhhhhh
Q psy15187 178 EKGRGFVTFDSPESSDKAIT 197 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~ 197 (298)
.+++|||+|.+.++|++||.
T Consensus 67 ~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 67 SKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp EEEEEEEEESCHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHH
Confidence 47899999999999999994
No 335
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=67.71 E-value=1.9 Score=32.10 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 69 ~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 69 SLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 378999999999999999954
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=65.95 E-value=3 Score=30.40 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.8
Q ss_pred ceeEEecChhhhhhhhhc
Q psy15187 181 RGFVTFDSPESSDKAITD 198 (298)
Q Consensus 181 ~gfV~f~~~~~adkai~~ 198 (298)
+|||+|.+.++|+++.+.
T Consensus 50 faFV~F~~~~~A~~~~~~ 67 (89)
T 3d2w_A 50 FAFVTFADDKVAQSLCGE 67 (89)
T ss_dssp EEEEEESCHHHHHHHTTC
T ss_pred EEEEEECCHHHHHHHcCC
Confidence 799999999999977654
No 337
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.71 E-value=15 Score=35.99 Aligned_cols=54 Identities=26% Similarity=0.362 Sum_probs=37.5
Q ss_pred CcEEEEcC-CCCCHHHHHHHHhccCCeeEEEEeeecCceeEEecChhhhhhhhhcCCceEEEEeCCHHHHHHHHHHhC
Q psy15187 145 GNTIFVQG-AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVN 221 (298)
Q Consensus 145 ~~tLfVgn-~~~te~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~~~~~adkai~~skGfaFV~F~~~e~A~~Ai~~ln 221 (298)
...++|+- ..+...+|.++|+.||.| +|..+ |..+ |||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~---------------------a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWI-DDTS---------------------AFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEECCTTCCHHHHHHHGGGGCCC-EEEEC-SSSE---------------------EEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEeCCCCCCHHHHHHHHHhcCCE-EEEEE-cCCe---------------------EEEEECCHHHHHHHHHHHH
Confidence 45777875 777889999999999954 55433 3333 4555666667777777774
No 338
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=65.28 E-value=2.7 Score=33.74 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.8
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 80 ~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 80 ACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 368999999999999999964
No 339
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.74 E-value=3.5 Score=32.09 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=14.4
Q ss_pred ceeEEecChhhhhhhh
Q psy15187 181 RGFVTFDSPESSDKAI 196 (298)
Q Consensus 181 ~gfV~f~~~~~adkai 196 (298)
+|||+|.+.++|++||
T Consensus 64 ~aFVef~~~~~A~~Ai 79 (112)
T 1x4f_A 64 QAFIEMETREDAMAMV 79 (112)
T ss_dssp EEEEECSSHHHHHHHH
T ss_pred EEEEEECCHHHHHHHH
Confidence 5999999999998877
No 340
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=63.62 E-value=2.3 Score=33.23 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=17.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+|+|||+|.+. +|.+||..
T Consensus 66 ~rG~aFV~f~~~-~a~~Ai~~ 85 (131)
T 2m2b_A 66 NRGFAFIQLSTI-EAAQLLQI 85 (131)
T ss_dssp BCSCEEEECCHH-HHHHHHHH
T ss_pred cceEEEEEECCH-HHHHHHHH
Confidence 489999999999 99999843
No 341
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=63.40 E-value=3.1 Score=32.94 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=18.9
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 88 ~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 88 SRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp CCSCCEEECSCHHHHHHHHTT
T ss_pred cceEEEEEECCHHHHHHHHHH
Confidence 479999999999999999954
No 342
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=67.24 E-value=1.5 Score=33.43 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=19.0
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~ 76 (116)
T 2lcw_A 56 LKGEATVSFDDPPSAKAAIDW 76 (116)
Confidence 479999999999999999964
No 343
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=63.06 E-value=4.2 Score=31.10 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=13.5
Q ss_pred eeEEecChhhhhhhh
Q psy15187 182 GFVTFDSPESSDKAI 196 (298)
Q Consensus 182 gfV~f~~~~~adkai 196 (298)
|||+|.+.++|..||
T Consensus 60 AFVef~~~~~A~~Av 74 (100)
T 3r27_A 60 ALVEFEDVLGACNAV 74 (100)
T ss_dssp EEEEESSHHHHHHHH
T ss_pred EEEEECCHHHHHHHH
Confidence 899999999888776
No 344
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.92 E-value=3.4 Score=29.62 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=16.1
Q ss_pred ceeEEecChhhhhhhhhc
Q psy15187 181 RGFVTFDSPESSDKAITD 198 (298)
Q Consensus 181 ~gfV~f~~~~~adkai~~ 198 (298)
+|||+|.+.++|+++++.
T Consensus 44 ~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 44 FAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCEEECSCHHHHHHTTTC
T ss_pred EEEEEECCHHHHHHHhcC
Confidence 699999999999988765
No 345
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=62.78 E-value=2.7 Score=30.17 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.7
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.+ |++|+..
T Consensus 42 ~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 42 PKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp CCEEEEEEECTTH-HHHHHHT
T ss_pred cceEEEEEECCHH-HHHHHHH
Confidence 4789999999999 9999954
No 346
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=62.73 E-value=2.7 Score=32.93 Aligned_cols=34 Identities=24% Similarity=0.153 Sum_probs=24.9
Q ss_pred ecCceeEEecChhhhhhhhhcCCce------EEEEeCCHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCAR------GFVTFDSPE 211 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skGf------aFV~F~~~e 211 (298)
.+|++||+|.+.++|.+|+..--|. -.|.|.+.+
T Consensus 70 ~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 70 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 109 (118)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred ceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChH
Confidence 4799999999999999999442221 246676654
No 347
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.52 E-value=4.1 Score=31.40 Aligned_cols=15 Identities=13% Similarity=0.574 Sum_probs=13.2
Q ss_pred eeEEecChhhhhhhh
Q psy15187 182 GFVTFDSPESSDKAI 196 (298)
Q Consensus 182 gfV~f~~~~~adkai 196 (298)
|||+|.+.++|++||
T Consensus 55 aFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 55 AFIEMNTEEAANTMV 69 (105)
T ss_dssp EEEEESSHHHHHHHH
T ss_pred EEEEECCHHHHHHHH
Confidence 899999999888776
No 348
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=61.93 E-value=2.5 Score=36.74 Aligned_cols=38 Identities=24% Similarity=0.077 Sum_probs=29.0
Q ss_pred ecCceeEEecChhhhhhhhhcCCc------eEEEEeCCHHHHHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDDCA------RGFVTFDSPESSDK 215 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~skG------faFV~F~~~e~A~~ 215 (298)
.+++|||+|.+.++|++||..-.| .-.|.|........
T Consensus 111 skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~~~~ 154 (229)
T 3q2s_C 111 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQFLSQ 154 (229)
T ss_dssp EEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCCccch
Confidence 479999999999999999954222 34788888765443
No 349
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=61.20 E-value=3.2 Score=31.18 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.8
Q ss_pred ceeEEecChhhhhhhhhc
Q psy15187 181 RGFVTFDSPESSDKAITD 198 (298)
Q Consensus 181 ~gfV~f~~~~~adkai~~ 198 (298)
+|||+|.+.++|++||..
T Consensus 64 ~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 64 YAFVQYSNERHARAAVLG 81 (110)
T ss_dssp EEEEECSSSHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHH
Confidence 489999999999999943
No 350
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.37 E-value=5 Score=29.29 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=15.2
Q ss_pred CceeEEecChhhhhhhh
Q psy15187 180 GRGFVTFDSPESSDKAI 196 (298)
Q Consensus 180 ~~gfV~f~~~~~adkai 196 (298)
++|||+|.+.++|++||
T Consensus 50 g~afV~f~~~~~a~~Ai 66 (97)
T 1x5p_A 50 NCAFVTYEKMESADQAV 66 (97)
T ss_dssp TEEEEEESSHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHH
Confidence 57999999999999886
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=59.79 E-value=3.2 Score=35.04 Aligned_cols=21 Identities=48% Similarity=0.544 Sum_probs=18.9
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+|+|||+|.+.++|++|+..
T Consensus 149 ~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 149 FKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp EEEEEEEEESSHHHHHHHHHC
T ss_pred cccEEEEEECCHHHHHHHHHh
Confidence 379999999999999999954
No 352
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.98 E-value=5.1 Score=30.36 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=13.4
Q ss_pred eeEEecChhhhhhhh
Q psy15187 182 GFVTFDSPESSDKAI 196 (298)
Q Consensus 182 gfV~f~~~~~adkai 196 (298)
|||+|.+.++|++||
T Consensus 54 aFVef~~~~~A~~Ai 68 (104)
T 1wex_A 54 ALVEFENIDSAKECV 68 (104)
T ss_dssp EEEEESSHHHHHHHH
T ss_pred EEEEECCHHHHHHHH
Confidence 899999999888776
No 353
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=58.91 E-value=3.4 Score=33.65 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.5
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 113 ~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 113 SKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred EeeEEEEEECCHHHHHHHHHH
Confidence 368999999999999999953
No 354
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.31 E-value=5.9 Score=30.11 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=11.4
Q ss_pred eEEecChhhhhhhh
Q psy15187 183 FVTFDSPESSDKAI 196 (298)
Q Consensus 183 fV~f~~~~~adkai 196 (298)
||+|.+.++|+.||
T Consensus 56 FVef~~~~~A~~Ai 69 (102)
T 1x4d_A 56 FIEMATTEDAQAAV 69 (102)
T ss_dssp EEEESSHHHHHHHH
T ss_pred EEEECCHHHHHHHH
Confidence 88899988877666
No 355
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.55 E-value=5.7 Score=31.06 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=13.4
Q ss_pred eeEEecChhhhhhhh
Q psy15187 182 GFVTFDSPESSDKAI 196 (298)
Q Consensus 182 gfV~f~~~~~adkai 196 (298)
|||+|.+.++|++|+
T Consensus 66 aFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 66 SFARYRTTEESKRAY 80 (114)
T ss_dssp EEEEESSHHHHHHHH
T ss_pred EEEEECCHHHHHHHH
Confidence 899999999888876
No 356
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=54.96 E-value=4.9 Score=33.40 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.9
Q ss_pred ecCceeEEecChhhhhhhhhc
Q psy15187 178 EKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~ 198 (298)
.+++|||+|.+.++|++||..
T Consensus 128 ~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 128 SLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp CSCCEEEEESCHHHHHHHHHH
T ss_pred EeeEEEEEeCCHHHHHHHHHH
Confidence 479999999999999999953
No 357
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=54.39 E-value=8.2 Score=36.94 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=26.4
Q ss_pred HHHHHHhccCCeeEEEE---eeecCceeEEecChhhhhhhhhc
Q psy15187 159 FLRQHFSIFGKICSVSM---EVEKGRGFVTFDSPESSDKAITD 198 (298)
Q Consensus 159 ~L~~~F~~fG~I~~v~i---~~dk~~gfV~f~~~~~adkai~~ 198 (298)
+|..-|+..-.|.-+.- -..+++|||+|.+.++|.+||..
T Consensus 121 ~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred HHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 33344554444433322 22479999999999999999954
No 358
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.22 E-value=5.9 Score=31.14 Aligned_cols=14 Identities=14% Similarity=0.603 Sum_probs=11.0
Q ss_pred eEEecChhhhhhhh
Q psy15187 183 FVTFDSPESSDKAI 196 (298)
Q Consensus 183 fV~f~~~~~adkai 196 (298)
||+|.+.++|++||
T Consensus 71 FVeF~~~e~A~~Ai 84 (119)
T 2ad9_A 71 FIEMNTEEAANTMV 84 (119)
T ss_dssp EEECSCHHHHHHHH
T ss_pred EEEECCHHHHHHHH
Confidence 67888888887766
No 359
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=50.79 E-value=8.5 Score=30.79 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.4
Q ss_pred ceeEEecChhhhhhhhhcCCc
Q psy15187 181 RGFVTFDSPESSDKAITDDCA 201 (298)
Q Consensus 181 ~gfV~f~~~~~adkai~~skG 201 (298)
.|||+|.+.++|++|+..--|
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG 88 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDG 88 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHHcCC
Confidence 499999999999999955333
No 360
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.19 E-value=13 Score=29.29 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=15.6
Q ss_pred ceeEEecChhhhhhhhh
Q psy15187 181 RGFVTFDSPESSDKAIT 197 (298)
Q Consensus 181 ~gfV~f~~~~~adkai~ 197 (298)
+|||+|.+.++|+.|+.
T Consensus 64 ~aFVef~~~~~A~~A~~ 80 (124)
T 2e5i_A 64 QAMVEFESVLCAQKAKA 80 (124)
T ss_dssp EEEEEESSHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHH
Confidence 69999999999999994
No 361
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=36.71 E-value=12 Score=31.51 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=24.4
Q ss_pred ecCceeEEecChhhhhhhhhcC-----Cc-eEEEEeCCHH
Q psy15187 178 EKGRGFVTFDSPESSDKAITDD-----CA-RGFVTFDSPE 211 (298)
Q Consensus 178 dk~~gfV~f~~~~~adkai~~s-----kG-faFV~F~~~e 211 (298)
.+|++||+|.+.++|.+||..- .| .-.|.|.+.+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 3689999999999999999331 12 2356776654
No 362
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=33.79 E-value=6.2 Score=32.32 Aligned_cols=28 Identities=21% Similarity=0.123 Sum_probs=17.4
Q ss_pred HHHHHHHhccCCeeEEEEeeecCceeEEec
Q psy15187 158 EFLRQHFSIFGKICSVSMEVEKGRGFVTFD 187 (298)
Q Consensus 158 ~~L~~~F~~fG~I~~v~i~~dk~~gfV~f~ 187 (298)
+|+.++|...|.|... ..+++||||+.+
T Consensus 2 ~~~~~l~~~~G~Vkwf--n~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF--NVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE--ETTTTEEEEEEE
T ss_pred CcccccccceeEEEEE--ECCCCeeEEeeC
Confidence 4666777778877763 335888888875
No 363
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.65 E-value=30 Score=24.96 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=4.3
Q ss_pred CceEEEEe
Q psy15187 200 CARGFVTF 207 (298)
Q Consensus 200 kGfaFV~F 207 (298)
+|||||+-
T Consensus 20 kGfGFI~~ 27 (79)
T 1h95_A 20 NGYGFINR 27 (79)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEec
Confidence 55555554
No 364
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=24.06 E-value=30 Score=25.87 Aligned_cols=12 Identities=8% Similarity=0.404 Sum_probs=6.8
Q ss_pred CCeEEEEEEccc
Q psy15187 226 QGVKLKVSLARR 237 (298)
Q Consensus 226 ~Gr~L~V~~A~~ 237 (298)
.|..+...+...
T Consensus 58 eG~~V~f~v~~g 69 (90)
T 3ulj_A 58 EGEPVEFTFKKS 69 (90)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCCEEEEEEEEC
Confidence 366666665543
No 365
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.14 E-value=83 Score=24.24 Aligned_cols=6 Identities=0% Similarity=0.191 Sum_probs=2.6
Q ss_pred EEEEcc
Q psy15187 231 KVSLAR 236 (298)
Q Consensus 231 ~V~~A~ 236 (298)
.|.|..
T Consensus 51 vItF~d 56 (104)
T 2dhx_A 51 VLTFRE 56 (104)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 444443
No 366
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=22.08 E-value=42 Score=27.27 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=16.3
Q ss_pred CCcEEEEcC---CCCCHHHHHHH
Q psy15187 144 GGNTIFVQG---AGISEEFLRQH 163 (298)
Q Consensus 144 ~~~tLfVgn---~~~te~~L~~~ 163 (298)
.+++||||| .+.|.++..++
T Consensus 82 qnNKlY~gg~~~RdLT~~Eq~EL 104 (149)
T 1f32_A 82 LGNKLFIDQKYVRDLTAKDHAEV 104 (149)
T ss_dssp ETTEEEETTEEEEECCHHHHHHH
T ss_pred EcCEEEECCEeeccCCHHHHHHH
Confidence 357999999 88898887765
Done!