Your job contains 1 sequence.
>psy15187
MAKYTLTKKSLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPK
RCEQEGFKRPRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLKVSKRETNDDR
TPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKG
RGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK
VAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIFGEEPPLEDPDSIAMETDK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15187
(298 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0017430 - symbol:Nelf-E "Negative elongation facto... 411 7.8e-62 2
UNIPROTKB|Q95ZE9 - symbol:Nelf-E "Negative elongation fac... 401 6.1e-60 2
UNIPROTKB|B4DUN1 - symbol:NELFE "cDNA FLJ52247, highly si... 197 7.3e-23 2
UNIPROTKB|K7GQ47 - symbol:RDBP "Uncharacterized protein" ... 200 1.4e-22 2
UNIPROTKB|Q0V898 - symbol:RDBP "Negative elongation facto... 200 1.4e-22 2
UNIPROTKB|F1RQW5 - symbol:RDBP "Uncharacterized protein" ... 200 1.5e-22 2
ZFIN|ZDB-GENE-040718-69 - symbol:nelfe "negative elongati... 182 2.6e-22 2
UNIPROTKB|P18615 - symbol:NELFE "Negative elongation fact... 197 4.5e-22 2
UNIPROTKB|B4DYX9 - symbol:NELFE "cDNA FLJ56180, highly si... 197 5.1e-22 2
UNIPROTKB|F1LP40 - symbol:Rdbp "Protein Rdbp" species:101... 190 2.0e-21 2
MGI|MGI:102744 - symbol:Nelfe "negative elongation factor... 190 2.3e-21 2
RGD|1303325 - symbol:Nelfe "negative elongation factor co... 190 3.3e-21 2
UNIPROTKB|A2ABK1 - symbol:NELFE "Protein NELFE" species:9... 116 6.0e-12 2
UNIPROTKB|A2ABK2 - symbol:NELFE "Protein NELFE" species:9... 112 5.8e-08 2
UNIPROTKB|A2ABK4 - symbol:NELFE "Protein NELFE" species:9... 112 3.1e-05 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 84 0.00016 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 88 0.00018 2
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 88 0.00019 2
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 88 0.00023 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 88 0.00023 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 88 0.00023 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 88 0.00023 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 88 0.00023 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 88 0.00023 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 88 0.00023 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 88 0.00023 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 88 0.00023 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 88 0.00023 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 88 0.00024 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 88 0.00024 2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 84 0.00024 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 88 0.00029 2
UNIPROTKB|E9PD43 - symbol:NELFE "Protein NELFE" species:9... 112 0.00047 1
ZFIN|ZDB-GENE-040923-2 - symbol:rbfox1l "RNA binding prot... 81 0.00049 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 88 0.00051 3
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 84 0.00063 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 89 0.00071 2
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 89 0.00072 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 88 0.00073 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 88 0.00076 2
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 83 0.00085 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 88 0.00086 2
FB|FBgn0038989 - symbol:CG6937 species:7227 "Drosophila m... 112 0.00089 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 89 0.00090 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 89 0.00090 2
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 82 0.00098 2
>FB|FBgn0017430 [details] [associations]
symbol:Nelf-E "Negative elongation factor E" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding"
evidence=ISS;IDA] [GO:0007070 "negative regulation of transcription
from RNA polymerase II promoter during mitosis" evidence=IDA]
[GO:0017053 "transcriptional repressor complex" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032021 "NELF
complex" evidence=IPI] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0017053
GO:GO:0005694 EMBL:AE014296 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0034244
GO:GO:0007070 GO:GO:0032021 eggNOG:NOG86140
GeneTree:ENSGT00630000089917 KO:K15182 EMBL:Y10015 EMBL:Y10016
EMBL:AY071061 RefSeq:NP_648241.1 UniGene:Dm.20046
ProteinModelPortal:P92204 SMR:P92204 IntAct:P92204 MINT:MINT-779659
STRING:P92204 PaxDb:P92204 PRIDE:P92204 EnsemblMetazoa:FBtr0076650
GeneID:38982 KEGG:dme:Dmel_CG5994 CTD:38982 FlyBase:FBgn0017430
InParanoid:P92204 OMA:ARRQPQI OrthoDB:EOG4KD535 PhylomeDB:P92204
GenomeRNAi:38982 NextBio:811294 Bgee:P92204 GermOnline:CG5994
Uniprot:P92204
Length = 280
Score = 411 (149.7 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 94/197 (47%), Positives = 131/197 (66%)
Query: 8 KKSLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGF 67
KK+LQA KAP+PEPE +S TLKRP +A+DAREVARKL+KSGAI P ++ + +Q F
Sbjct: 28 KKALQAHKAPKPEPE---SSLTLKRPTDARDAREVARKLIKSGAI-PAIQKQTKQDQTSF 83
Query: 68 KRPRGLERKLTETDRSTVSAYQPFSAIQPEDS-EPVDSKPKFLKVSKRETN---DDRTPV 123
KRP+G ER T +TV++YQPFS+ Q + + E + S+ +K R N T
Sbjct: 84 KRPKGQERAKRSTSETTVASYQPFSSTQNDVAQETIISE--IIKEEPRRQNLYQHFATER 141
Query: 124 DKKVYG--ESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGR 181
D++ G E + A EKP+ GNTIFV G ++E+FL++ F+ +G I +VSME+EK R
Sbjct: 142 DREERGMPEKVPMDTAQPEKPRAGNTIFVSGNKVTEDFLKKTFNDYGTIVNVSMEIEKSR 201
Query: 182 GFVTFDSPESSDKAITD 198
GFV+F PES+D+AI +
Sbjct: 202 GFVSFAKPESADRAIAE 218
Score = 239 (89.2 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQ 260
+RGFV+F PES+D+AI E++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +
Sbjct: 200 SRGFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASK 259
Query: 261 SLKGNHKDKRHQVIYDDD 278
S KG+HKD R V YD+D
Sbjct: 260 SQKGSHKDHREMVQYDED 277
>UNIPROTKB|Q95ZE9 [details] [associations]
symbol:Nelf-E "Negative elongation factor E" species:7244
"Drosophila virilis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0007070 "negative regulation of transcription from RNA
polymerase II promoter during mitosis" evidence=ISS] [GO:0017053
"transcriptional repressor complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0017053 GO:GO:0005694 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0007070
eggNOG:NOG86140 OrthoDB:EOG4KD535 EMBL:AJ306692
ProteinModelPortal:Q95ZE9 STRING:Q95ZE9 FlyBase:FBgn0044888
InParanoid:Q95ZE9 Uniprot:Q95ZE9
Length = 281
Score = 401 (146.2 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 93/197 (47%), Positives = 128/197 (64%)
Query: 8 KKSLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQEGF 67
KK+LQA KAP+ EPE ++ TLKRP +A+DAREVARKL+KSGAI I + + +Q F
Sbjct: 28 KKALQAHKAPKQEPE---SALTLKRPTDARDAREVARKLIKSGAIPAIQKQQTKQDQTSF 84
Query: 68 KRPRGLERKLTETDRSTVSAYQPFSAIQPEDS-EPVDSKPKFLKVSKRETNDDRTPVDKK 126
KRP+G ER T +TV+AYQPFS+ Q + + E + S+ +K R N + ++
Sbjct: 85 KRPKGQERAKRSTSETTVAAYQPFSSTQNDVAQETIISE--IIKEEPRRQNLYQHFATER 142
Query: 127 VYGESLLTR-----LAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGR 181
V E LT EKP+ GNTIFV G ++EEFL++ F+ +G I +VSME+EK R
Sbjct: 143 VREERGLTEKVTLDTTQPEKPRAGNTIFVSGNKVTEEFLKKTFNDYGTIVNVSMEIEKSR 202
Query: 182 GFVTFDSPESSDKAITD 198
GFV+F PES+D+AI +
Sbjct: 203 GFVSFAKPESADRAIAE 219
Score = 231 (86.4 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQ 260
+RGFV+F PES+D+AI E++G V G+ L+V LARRQ ++ PINDA+SS WS+IA +
Sbjct: 201 SRGFVSFAKPESADRAIAEMHGKSVTGIVLQVQLARRQPQIVPINDASSSAVWSSIAASK 260
Query: 261 SLKGNHKDKRHQVIYDDD 278
S KG+HKD R V Y+DD
Sbjct: 261 SQKGSHKDLRQMVQYNDD 278
>UNIPROTKB|B4DUN1 [details] [associations]
symbol:NELFE "cDNA FLJ52247, highly similar to Negative
elongation factor E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003746 "translation
elongation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003746
EMBL:AL645922 HOGENOM:HOG000232089 HOVERGEN:HBG052598
UniGene:Hs.423935 HGNC:HGNC:13974 EMBL:AK300717 IPI:IPI00921016
SMR:B4DUN1 STRING:B4DUN1 Ensembl:ENST00000444811 UCSC:uc011dot.2
Uniprot:B4DUN1
Length = 350
Score = 197 (74.4 bits), Expect = 7.3e-23, Sum P(2) = 7.3e-23
Identities = 39/85 (45%), Positives = 61/85 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVT++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 266 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLA 319
Query: 258 CHQSLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 320 VQNSPKGCHRDKRTQIVYSDDVYKE 344
Score = 117 (46.2 bits), Expect = 7.3e-23, Sum P(2) = 7.3e-23
Identities = 53/204 (25%), Positives = 89/204 (43%)
Query: 5 TLTKKSLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLL----------KSGAINP 54
TL K +K P P + Q S + ++ + +R RK L +SGA +
Sbjct: 91 TLEGKLKDPEKGPVPTFQPFQRSISADDDLQ-ESSRRPQRKSLYESFDWGYEERSGAHSS 149
Query: 55 IVRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLKVSKR 114
P R +R R +R E DR + + D + D + + +R
Sbjct: 150 ASPPRSRSRDRSHERNRDRDRD-RERDRDR-DRDRDRERDRDRDRDR-DRDRERDRDRER 206
Query: 115 ETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNTIFVQGAGISEEFLRQHFSIFGKICSVS 174
+ + DR ++ +S R AP + GNT++V G ++ LR FS FG I +S
Sbjct: 207 DRDRDREGPFRR--SDSFPERRAPRK----GNTLYVYGEDMTPTLLRGAFSPFGNIIDLS 260
Query: 175 MEVEKGRGFVTFDSPESSDKAITD 198
M+ + FVT++ ES+D+A+ +
Sbjct: 261 MDPPRNCAFVTYEKMESADQAVAE 284
Score = 113 (44.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 37/115 (32%), Positives = 56/115 (48%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLKVSKRETND 118
GFKR R LE KL + ++ V +QPF D + +S + + S E+ D
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYESFD 137
>UNIPROTKB|K7GQ47 [details] [associations]
symbol:RDBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00630000089917 EMBL:CT956038
Ensembl:ENSSSCT00000032936 Uniprot:K7GQ47
Length = 373
Score = 200 (75.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVT++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 289 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLA 342
Query: 258 CHQSLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 343 VQNSPKGCHRDKRTQIVYSDDVYKE 367
Score = 115 (45.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+ +
Sbjct: 251 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 307
Score = 112 (44.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSSTASQGGVKRSLSEQPVVDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPFS-AIQPED 98
GFKR R LE KL + ++ V +QPF +I +D
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADD 118
>UNIPROTKB|Q0V898 [details] [associations]
symbol:RDBP "Negative elongation factor E" species:9913
"Bos taurus" [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0032021 "NELF complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0034244 GO:GO:0032021
EMBL:BT026321 EMBL:BC120072 IPI:IPI00699932 RefSeq:NP_001069672.1
UniGene:Bt.36000 ProteinModelPortal:Q0V898 SMR:Q0V898 STRING:Q0V898
PRIDE:Q0V898 Ensembl:ENSBTAT00000009802 GeneID:540158
KEGG:bta:540158 CTD:7936 eggNOG:NOG86140
GeneTree:ENSGT00630000089917 HOGENOM:HOG000232089
HOVERGEN:HBG052598 InParanoid:Q0V898 KO:K15182 OMA:GYEERSG
OrthoDB:EOG4PNXJ1 NextBio:20878458 Uniprot:Q0V898
Length = 374
Score = 200 (75.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVT++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 290 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLA 343
Query: 258 CHQSLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 344 VQNSPKGCHRDKRTQIVYSDDVYKE 368
Score = 115 (45.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+ +
Sbjct: 252 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 308
Score = 112 (44.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 35/106 (33%), Positives = 53/106 (50%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSSTASQGGVKRSLSEQPVVDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPF--SAIQPEDSEPVDSKPK 107
GFKR R LE KL + ++ V +QPF S +D + +P+
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSVSADDDLQESSRRPQ 128
>UNIPROTKB|F1RQW5 [details] [associations]
symbol:RDBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0032021 "NELF complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0034244 GO:GO:0032021
GeneTree:ENSGT00630000089917 OMA:GYEERSG EMBL:CT956038
Ensembl:ENSSSCT00000001565 ArrayExpress:F1RQW5 Uniprot:F1RQW5
Length = 378
Score = 200 (75.5 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVT++ ES+D+A+ E+NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A
Sbjct: 294 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLA 347
Query: 258 CHQSLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 348 VQNSPKGCHRDKRTQIVYSDDVYKE 372
Score = 115 (45.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+ +
Sbjct: 256 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 312
Score = 112 (44.5 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSSTASQGGVKRSLSEQPVVDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPFS-AIQPED 98
GFKR R LE KL + ++ V +QPF +I +D
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADD 118
>ZFIN|ZDB-GENE-040718-69 [details] [associations]
symbol:nelfe "negative elongation factor complex
member E" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040718-69 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089917
EMBL:FP102194 IPI:IPI00934333 Ensembl:ENSDART00000113250
ArrayExpress:F1QK79 Bgee:F1QK79 Uniprot:F1QK79
Length = 378
Score = 182 (69.1 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 38/81 (46%), Positives = 58/81 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVTF+ ES+D+A+ E+NGT V V +KVS+AR+Q P+ DAA+ + W+++A
Sbjct: 302 NCA--FVTFEKIESADQAVAELNGTTVGDVNIKVSIARKQ----PMLDAATGKSVWASLA 355
Query: 258 CHQSLKGNHKDKRHQVIYDDD 278
S KG+++DKR QV+Y +D
Sbjct: 356 VQNSAKGSYRDKRSQVVYSED 376
Score = 135 (52.6 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 43/121 (35%), Positives = 58/121 (47%)
Query: 3 KYTLTKKSLQAQKAPRPEPERTQASST-LKR-----PI-EAKDAREVARKLLKSGAINPI 55
KY KK +A A + + Q S T LKR P+ + A E A+ L+KSGAI+ I
Sbjct: 50 KYAKLKKKKKALMALKKQSSTNQTSQTGLKRTLSDQPVVDTATATEQAKMLIKSGAISAI 109
Query: 56 VRPPKRCEQEGFKRPRGLERKLTETDRSTVSAYQPFSAIQPEDSEPVDSKPKFLKVSKRE 115
K GFKR R LE KL + ++ A+ PF D EP DS + + S E
Sbjct: 110 KSENKN---SGFKRSRMLEGKLKDPEKGPAPAFLPFQRSVSTDEEPPDSAKRIHRKSLYE 166
Query: 116 T 116
+
Sbjct: 167 S 167
Score = 115 (45.5 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 145 GNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
GNT++V G G+ E+ LR F+ G I +SM+ + FVTF+ ES+D+A+ +
Sbjct: 267 GNTVYVYGTGLVEDSLRTAFAQHGNIIDLSMDSPRNCAFVTFEKIESADQAVAE 320
>UNIPROTKB|P18615 [details] [associations]
symbol:NELFE "Negative elongation factor E" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0034244 "negative regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008150
"biological_process" evidence=ND] [GO:0032021 "NELF complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
Reactome:REACT_116125 GO:GO:0016032 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006368 EMBL:AL049547
GO:GO:0034244 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
EMBL:AF019413 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR388219 EMBL:AL645922 EMBL:CR753845
GO:GO:0032021 CTD:7936 eggNOG:NOG86140 HOGENOM:HOG000232089
HOVERGEN:HBG052598 KO:K15182 OrthoDB:EOG4PNXJ1 EMBL:M33231
EMBL:M32274 EMBL:M32275 EMBL:M32276 EMBL:M33230 EMBL:L03411
EMBL:BC025235 EMBL:BC050617 EMBL:X16105 IPI:IPI00941607 PIR:S36789
RefSeq:NP_002895.3 UniGene:Hs.423935 PDB:1X5P PDB:2BZ2 PDB:2JX2
PDBsum:1X5P PDBsum:2BZ2 PDBsum:2JX2 ProteinModelPortal:P18615
SMR:P18615 DIP:DIP-32669N IntAct:P18615 MINT:MINT-1033320
STRING:P18615 PhosphoSite:P18615 DMDM:1350554 PaxDb:P18615
PRIDE:P18615 DNASU:7936 Ensembl:ENST00000375429
Ensembl:ENST00000383174 Ensembl:ENST00000383343
Ensembl:ENST00000429857 Ensembl:ENST00000448628
Ensembl:ENST00000457397 GeneID:7936 KEGG:hsa:7936 UCSC:uc003nyk.3
GeneCards:GC06M031922 HGNC:HGNC:13974 HPA:HPA007187 MIM:154040
neXtProt:NX_P18615 PharmGKB:PA134974984 InParanoid:P18615
PhylomeDB:P18615 EvolutionaryTrace:P18615 GenomeRNAi:7936
NextBio:30439 ArrayExpress:P18615 Bgee:P18615 CleanEx:HS_RDBP
Genevestigator:P18615 GermOnline:ENSG00000204356 Uniprot:P18615
Length = 380
Score = 197 (74.4 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 39/85 (45%), Positives = 61/85 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVT++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 296 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLA 349
Query: 258 CHQSLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 350 VQNSPKGCHRDKRTQIVYSDDVYKE 374
Score = 116 (45.9 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 114 RETNDDRT-PVDKKVYGESLLTRLAPNEK-PKGGNTIFVQGAGISEEFLRQHFSIFGKIC 171
RE + DR D+ G + P + P+ GNT++V G ++ LR FS FG I
Sbjct: 228 RERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNII 287
Query: 172 SVSMEVEKGRGFVTFDSPESSDKAITD 198
+SM+ + FVT++ ES+D+A+ +
Sbjct: 288 DLSMDPPRNCAFVTYEKMESADQAVAE 314
Score = 112 (44.5 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPFS-AIQPED 98
GFKR R LE KL + ++ V +QPF +I +D
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADD 118
>UNIPROTKB|B4DYX9 [details] [associations]
symbol:NELFE "cDNA FLJ56180, highly similar to Negative
elongation factor E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003746 "translation
elongation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003746
EMBL:AL844853 EMBL:AL662849 EMBL:BX005143 EMBL:CR759782
EMBL:CR388219 EMBL:AL645922 EMBL:CR753845 HOGENOM:HOG000232089
HOVERGEN:HBG052598 OMA:GYEERSG UniGene:Hs.423935 HGNC:HGNC:13974
EMBL:AK302652 IPI:IPI00000858 SMR:B4DYX9 STRING:B4DYX9
Ensembl:ENST00000375425 Ensembl:ENST00000548056
Ensembl:ENST00000548988 Ensembl:ENST00000549252
Ensembl:ENST00000551833 Ensembl:ENST00000552869 Uniprot:B4DYX9
Length = 387
Score = 197 (74.4 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 39/85 (45%), Positives = 61/85 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVT++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 303 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLA 356
Query: 258 CHQSLKGNHKDKRHQVIYDDDIFGE 282
S KG H+DKR Q++Y DD++ E
Sbjct: 357 VQNSPKGCHRDKRTQIVYSDDVYKE 381
Score = 116 (45.9 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 114 RETNDDRT-PVDKKVYGESLLTRLAPNEK-PKGGNTIFVQGAGISEEFLRQHFSIFGKIC 171
RE + DR D+ G + P + P+ GNT++V G ++ LR FS FG I
Sbjct: 235 RERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNII 294
Query: 172 SVSMEVEKGRGFVTFDSPESSDKAITD 198
+SM+ + FVT++ ES+D+A+ +
Sbjct: 295 DLSMDPPRNCAFVTYEKMESADQAVAE 321
Score = 112 (44.5 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 33 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKN-- 90
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPFS-AIQPED 98
GFKR R LE KL + ++ V +QPF +I +D
Sbjct: 91 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADD 125
>UNIPROTKB|F1LP40 [details] [associations]
symbol:Rdbp "Protein Rdbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IEA] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1303325 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034244 GO:GO:0032021
GeneTree:ENSGT00630000089917 OMA:GYEERSG IPI:IPI00422013
Ensembl:ENSRNOT00000000478 ArrayExpress:F1LP40 Uniprot:F1LP40
Length = 344
Score = 190 (71.9 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 38/82 (46%), Positives = 59/82 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVT++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 269 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLA 322
Query: 258 CHQSLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 323 VQNSPKGCHRDKRTQIVYSDDL 344
Score = 115 (45.5 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+ +
Sbjct: 231 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 287
Score = 113 (44.8 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 1 KKALLALKKQSSSGTASQGGVKRSLSEQPVVDTATATEQAKQLVKSGAISAIKAETKN-- 58
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPF--SAIQPEDSEPVDSKPK 107
GFKR R LE KL + ++ V +QPF S ED + +P+
Sbjct: 59 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSMSADEDLQEPSRRPQ 103
Score = 38 (18.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 22/95 (23%), Positives = 36/95 (37%)
Query: 5 TLTKKSLQAQKAPRP--EP-ERTQ-ASSTLKRPIEAKDAREVARKLLKSG-AINPIVRPP 59
TL K +K P P +P +R+ A L+ P + + + S + + +
Sbjct: 66 TLEGKLKDPEKGPVPTFQPFQRSMSADEDLQEPSRRPQRKSLYESFVSSSDRLRELGQDG 125
Query: 60 KRCEQEGFKR--PRGLERKLTETDRSTVSAYQPFS 92
+ E G PRG + E + SA P S
Sbjct: 126 EEAEAPGAGEGPPRGFDWSYEEHSGARSSASPPRS 160
>MGI|MGI:102744 [details] [associations]
symbol:Nelfe "negative elongation factor complex member E,
Rdbp" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032021 "NELF complex" evidence=ISO] [GO:0034244
"negative regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:102744 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0034244 EMBL:AF109906
UniGene:Mm.653 GO:GO:0032021 CTD:7936 eggNOG:NOG86140
HOGENOM:HOG000232089 HOVERGEN:HBG052598 KO:K15182 OMA:GYEERSG
OrthoDB:EOG4PNXJ1 EMBL:M21332 EMBL:AK012389 EMBL:BC034867
EMBL:U83841 EMBL:U83842 IPI:IPI00395067 IPI:IPI00395068 PIR:A40112
RefSeq:NP_001039328.1 RefSeq:NP_001039329.1 RefSeq:NP_613046.2
UniGene:Mm.279907 ProteinModelPortal:P19426 SMR:P19426
IntAct:P19426 STRING:P19426 PhosphoSite:P19426 PaxDb:P19426
PRIDE:P19426 Ensembl:ENSMUST00000097343 Ensembl:ENSMUST00000165953
Ensembl:ENSMUST00000173357 GeneID:27632 KEGG:mmu:27632
InParanoid:P19426 NextBio:305826 Bgee:P19426 CleanEx:MM_RDBP
Genevestigator:P19426 GermOnline:ENSMUSG00000024369 Uniprot:P19426
Length = 375
Score = 190 (71.9 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 38/82 (46%), Positives = 59/82 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVT++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 300 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLA 353
Query: 258 CHQSLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 354 VQNSPKGCHRDKRTQIVYSDDL 375
Score = 115 (45.5 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 10 SLQAQKAPRPEPERTQASSTLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCEQEGFK 68
+L+ Q + P + S ++P+ + A E A++L+KSGAI+ I K GFK
Sbjct: 31 ALKKQSSSGPASQGGVKRSLSEQPVVDTATATEQAKQLVKSGAISAIKAETKN---SGFK 87
Query: 69 RPRGLERKLTETDRSTVSAYQPF--SAIQPEDSEPVDSKPK 107
R R LE KL + ++ V +QPF S ED + +P+
Sbjct: 88 RSRTLEGKLKDPEKGPVPTFQPFQRSMSADEDLQEPSRRPQ 128
Score = 115 (45.5 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+ +
Sbjct: 262 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 318
>RGD|1303325 [details] [associations]
symbol:Nelfe "negative elongation factor complex member E"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0032021
"NELF complex" evidence=ISO] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1303325 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BX883045 GO:GO:0034244
EMBL:CH474121 GO:GO:0032021 CTD:7936 HOGENOM:HOG000232089
HOVERGEN:HBG052598 KO:K15182 OrthoDB:EOG4PNXJ1 IPI:IPI00422013
EMBL:BC079427 RefSeq:NP_001159373.1 RefSeq:NP_997713.1
UniGene:Rn.16164 SMR:Q6MG75 STRING:Q6MG75 GeneID:294258
KEGG:rno:294258 UCSC:RGD:1303325 eggNOG:NOG247039 InParanoid:Q6MG75
NextBio:637845 Genevestigator:Q6MG75 Uniprot:Q6MG75
Length = 369
Score = 190 (71.9 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 38/82 (46%), Positives = 59/82 (71%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIA 257
+CA FVT++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A
Sbjct: 294 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLA 347
Query: 258 CHQSLKGNHKDKRHQVIYDDDI 279
S KG H+DKR Q++Y DD+
Sbjct: 348 VQNSPKGCHRDKRTQIVYSDDL 369
Score = 115 (45.5 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
P+ GNT++V G ++ LR FS FG I +SM+ + FVT++ ES+D+A+ +
Sbjct: 256 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 312
Score = 113 (44.8 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSGTASQGGVKRSLSEQPVVDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPF--SAIQPEDSEPVDSKPK 107
GFKR R LE KL + ++ V +QPF S ED + +P+
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSMSADEDLQEPSRRPQ 128
Score = 38 (18.4 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 22/95 (23%), Positives = 36/95 (37%)
Query: 5 TLTKKSLQAQKAPRP--EP-ERTQ-ASSTLKRPIEAKDAREVARKLLKSG-AINPIVRPP 59
TL K +K P P +P +R+ A L+ P + + + S + + +
Sbjct: 91 TLEGKLKDPEKGPVPTFQPFQRSMSADEDLQEPSRRPQRKSLYESFVSSSDRLRELGQDG 150
Query: 60 KRCEQEGFKR--PRGLERKLTETDRSTVSAYQPFS 92
+ E G PRG + E + SA P S
Sbjct: 151 EEAEAPGAGEGPPRGFDWSYEEHSGARSSASPPRS 185
>UNIPROTKB|A2ABK1 [details] [associations]
symbol:NELFE "Protein NELFE" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL844853
EMBL:AL662849 EMBL:BX005143 EMBL:CR759782 EMBL:CR388219
EMBL:AL645922 EMBL:CR753845 eggNOG:NOG86140 HOGENOM:HOG000232089
HOVERGEN:HBG052598 UniGene:Hs.423935 HGNC:HGNC:13974
IPI:IPI00941723 SMR:A2ABK1 Ensembl:ENST00000424762
Ensembl:ENST00000425810 Ensembl:ENST00000440478
Ensembl:ENST00000441998 Ensembl:ENST00000443464
Ensembl:ENST00000452147 Uniprot:A2ABK1
Length = 334
Score = 116 (45.9 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 114 RETNDDRT-PVDKKVYGESLLTRLAPNEK-PKGGNTIFVQGAGISEEFLRQHFSIFGKIC 171
RE + DR D+ G + P + P+ GNT++V G ++ LR FS FG I
Sbjct: 223 RERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNII 282
Query: 172 SVSMEVEKGRGFVTFDSPESSDKAITD 198
+SM+ + FVT++ ES+D+A+ +
Sbjct: 283 DLSMDPPRNCAFVTYEKMESADQAVAE 309
Score = 115 (45.5 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAPINDAA 248
+CA FVT++ ES+D+A+ E+NGT V+ V+LKV++AR+Q P+ DAA
Sbjct: 291 NCA--FVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ----PMLDAA 334
Score = 112 (44.5 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPFS-AIQPED 98
GFKR R LE KL + ++ V +QPF +I +D
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADD 118
Score = 37 (18.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 21/98 (21%), Positives = 34/98 (34%)
Query: 5 TLTKKSLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKRCEQ 64
TL K +K P P + Q S + ++ R + L +S + + + E
Sbjct: 91 TLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYESDRLRELGPDGEEAEG 150
Query: 65 EGFKR--PRGLERKLTETDRSTVSAYQPFSAIQPEDSE 100
G PR + E + SA P S + E
Sbjct: 151 PGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHE 188
>UNIPROTKB|A2ABK2 [details] [associations]
symbol:NELFE "Protein NELFE" species:9606 "Homo sapiens"
[GO:0034244 "negative regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] GO:GO:0005739 GO:GO:0005634
GO:GO:0034244 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR388219 EMBL:AL645922 EMBL:CR753845
HOGENOM:HOG000232089 HOVERGEN:HBG052598 UniGene:Hs.423935
HGNC:HGNC:13974 IPI:IPI00922214 SMR:A2ABK2 Ensembl:ENST00000411745
Ensembl:ENST00000434518 Ensembl:ENST00000437732
Ensembl:ENST00000453084 Ensembl:ENST00000454913
Ensembl:ENST00000456263 Uniprot:A2ABK2
Length = 294
Score = 112 (44.5 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPFS-AIQPED 98
GFKR R LE KL + ++ V +QPF +I +D
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADD 118
Score = 76 (31.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 114 RETNDDRT-PVDKKVYGESLLTRLAPNEK-PKGGNTIFVQGAGISEEFLRQHFSIFGKIC 171
RE + DR D+ G + P + P+ GNT++V G ++ LR FS FG I
Sbjct: 228 RERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNII 287
Query: 172 SVSME 176
+SM+
Sbjct: 288 DLSMD 292
>UNIPROTKB|A2ABK4 [details] [associations]
symbol:NELFE "Protein NELFE" species:9606 "Homo sapiens"
[GO:0034244 "negative regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] GO:GO:0005739 GO:GO:0005634
GO:GO:0034244 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR388219 EMBL:AL645922 EMBL:CR753845
UniGene:Hs.423935 HGNC:HGNC:13974 IPI:IPI00642023
Ensembl:ENST00000418059 Ensembl:ENST00000420039
Ensembl:ENST00000420837 Ensembl:ENST00000425721
Ensembl:ENST00000426722 Ensembl:ENST00000458622
HOGENOM:HOG000197777 HOVERGEN:HBG103883 Uniprot:A2ABK4
Length = 159
Score = 112 (44.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPFS-AIQPED 98
GFKR R LE KL + ++ V +QPF +I +D
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADD 118
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 84 (34.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 192 SDKAITDDCAR----GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
S K +TD + GFV+FDS E++ KA+ E+NG + G + V A+++++
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 270
Score = 77 (32.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITD 198
GN +F++ I + L +HFS FGKI S + + KG FV F + ++D+AI +
Sbjct: 98 GN-VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEE 156
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 88 (36.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 272 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 307
Score = 77 (32.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 27 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 86
Query: 192 SDKAI 196
+++AI
Sbjct: 87 AERAI 91
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 88 (36.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 291 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 326
Score = 77 (32.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 46 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 105
Query: 192 SDKAI 196
+++AI
Sbjct: 106 AERAI 110
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 88 (36.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 88 (36.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 346 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 381
Score = 77 (32.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IFV+ I + L FS FG I C V + KG GFV F++ E
Sbjct: 91 PSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEE 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 88 (36.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 84 (34.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 192 SDKAITDDCAR----GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
S K +TD + GFV+FDS E++ KA+ E+NG + G + V A+++++
Sbjct: 276 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 328
Score = 77 (32.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 145 GNTIFVQGA--GISEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKAITD 198
GN +F++ I + L +HFS FGKI S + + KG FV F + ++D+AI +
Sbjct: 156 GN-VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEE 214
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 88 (36.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 76 (31.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IF++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|E9PD43 [details] [associations]
symbol:NELFE "Protein NELFE" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
GO:GO:0005739 GO:GO:0005634 EMBL:AL645922 HGNC:HGNC:13974
IPI:IPI01009325 ProteinModelPortal:E9PD43 Ensembl:ENST00000436289
ArrayExpress:E9PD43 Bgee:E9PD43 Uniprot:E9PD43
Length = 260
Score = 112 (44.5 bits), Expect = 0.00047, P = 0.00047
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 8 KKSLQAQKAPRPEPERTQAS---STLKRPI-EAKDAREVARKLLKSGAINPIVRPPKRCE 63
KK+L A K +Q S ++P+ + A E A++L+KSGAI+ I K
Sbjct: 26 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKN-- 83
Query: 64 QEGFKRPRGLERKLTETDRSTVSAYQPFS-AIQPED 98
GFKR R LE KL + ++ V +QPF +I +D
Sbjct: 84 -SGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADD 118
>ZFIN|ZDB-GENE-040923-2 [details] [associations]
symbol:rbfox1l "RNA binding protein, fox-1 homolog
(C. elegans) 1-like" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IGI;IDA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA;IGI;IDA;IMP] [GO:0048739 "cardiac muscle fiber
development" evidence=IGI] [GO:0048741 "skeletal muscle fiber
development" evidence=IGI] [GO:0008380 "RNA splicing"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040923-2 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048741
GO:GO:0043484 GO:GO:0048739 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 EMBL:AB074763
EMBL:BX511250 IPI:IPI00505620 RefSeq:NP_999940.1 UniGene:Dr.30455
ProteinModelPortal:Q7ZT82 SMR:Q7ZT82 STRING:Q7ZT82 PRIDE:Q7ZT82
Ensembl:ENSDART00000027364 GeneID:407613 KEGG:dre:407613 CTD:407613
InParanoid:Q7ZT82 OMA:LYRGGYN OrthoDB:EOG4CRM0S NextBio:20818492
ArrayExpress:Q7ZT82 Bgee:Q7ZT82 Uniprot:Q7ZT82
Length = 382
Score = 81 (33.6 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR-RQLKVAPINDAASSTTW 253
GFVTF+S +D+A ++NGT V+G K++V+ A R + P ++ W
Sbjct: 189 GFVTFESAVEADRAREKLNGTIVEGRKIEVNNATARVVTKKPQTPLVNAAGW 240
Score = 76 (31.8 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 35/112 (31%), Positives = 50/112 (44%)
Query: 89 QPFSAIQPEDS-EPVDSKPKFLKVSKRETNDDRTPVDKKVYGESLLTRLAPNEKPKGGNT 147
+ +A +DS PV S P+ L VS + D++ G++ RL + P
Sbjct: 101 ESITASNTDDSLAPVTSDPQSLSVSVASGSGAAGGSDEEGGGKAQPKRLHVSNIP----- 155
Query: 148 IFVQGAGISEEFLRQHFSIFGKICSVSM----EVEKGRGFVTFDSPESSDKA 195
F + LRQ F FGKI V + KG GFVTF+S +D+A
Sbjct: 156 -F----RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFESAVEADRA 202
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 88 (36.0 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SP+ + KA+TE+N V G L V+LA+R+
Sbjct: 420 GFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
Score = 76 (31.8 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKI--CSVSME---VEKGRGFVTFDSPE 190
P + G +F++ + I + L F+ FG I C V+ + V KG GFV +++ E
Sbjct: 122 PALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAE 181
Query: 191 SSDKAI 196
+++ AI
Sbjct: 182 AANNAI 187
Score = 37 (18.1 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 16 APRPEPERTQASSTLKRPIEA 36
AP PE +A +T +P A
Sbjct: 22 APAPEVTAVEAPATTSQPHSA 42
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 84 (34.6 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA++E+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 138 PNEKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G +F++ I + L FS FG I C V + KG GFV F++ E+
Sbjct: 91 PSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 89 (36.4 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 71 (30.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P + G +F++ I + L FS FG I C V + +G GFV F++ E+
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 ANRAI 155
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 89 (36.4 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 71 (30.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P + G +F++ I + L FS FG I C V + +G GFV F++ E+
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEA 150
Query: 192 SDKAI 196
+ +AI
Sbjct: 151 ATRAI 155
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 88 (36.0 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 72 (30.4 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P+ + G IFV+ I+ + L S FG I C+V + KG GFV F++ E+
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 AERAI 155
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 88 (36.0 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVK-LKVSLARRQ 238
GFV F SPE + KA+TE+NG + G K L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNG-RILGTKPLYVALAQRK 371
Score = 72 (30.4 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKICSVSMEVE----KGRGFVTFDSPES 191
P + G IF++ I + L FS FG I S + + +G GFV F++ E+
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEA 150
Query: 192 SDKAIT 197
+ +AIT
Sbjct: 151 AQQAIT 156
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 83 (34.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 191 SSDKAITDDCAR----GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+S K +TD+ R GFV F+ PE + A+TE+N V L V++A+R+
Sbjct: 344 TSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRK 395
Score = 77 (32.2 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 125 KKVYGESLLTRLAPN----EKPKGGNTIFVQGAG--ISEEFLRQHFSIFGKICSVS-MEV 177
KKV+ R N E K ++V+ G ++E L + F+ FG I S M V
Sbjct: 188 KKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV 247
Query: 178 E---KGRGFVTFDSPESSDKAI 196
E KG GFV F +PE ++ A+
Sbjct: 248 EGKSKGFGFVAFANPEEAETAV 269
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 88 (36.0 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVK-LKVSLARRQ 238
GFV F SPE + KA+TE+NG + G K L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNG-RIVGTKPLYVALAQRK 371
Score = 71 (30.1 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P + G IF++ I + L FS FG I C V+ + +G GFV F++ E+
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 192 SDKAI 196
+ +AI
Sbjct: 151 AQQAI 155
>FB|FBgn0038989 [details] [associations]
symbol:CG6937 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00390000011515 KO:K14838 FlyBase:FBgn0038989
RefSeq:NP_651066.2 UniGene:Dm.6006 ProteinModelPortal:Q9VCY1
SMR:Q9VCY1 IntAct:Q9VCY1 MINT:MINT-852149 STRING:Q9VCY1
PRIDE:Q9VCY1 EnsemblMetazoa:FBtr0084266 GeneID:42662
KEGG:dme:Dmel_CG6937 UCSC:CG6937-RA InParanoid:Q9VCY1 OMA:MDNYLMF
PhylomeDB:Q9VCY1 GenomeRNAi:42662 NextBio:829945
ArrayExpress:Q9VCY1 Bgee:Q9VCY1 Uniprot:Q9VCY1
Length = 356
Score = 112 (44.5 bits), Expect = 0.00089, P = 0.00089
Identities = 56/200 (28%), Positives = 86/200 (43%)
Query: 101 PVDSKPKFLKVSKRETNDDRTPVD--KKVYGESL---LTRLAPNEKPKGGN--TIFVQGA 153
PV KPK K+ K+ T + P+D K V L +T+ P +KPKG + V+
Sbjct: 3 PV-KKPKAQKIEKQST--PKKPIDAAKNVVSGQLKKKVTKARP-QKPKGPERGVVIVKHL 58
Query: 154 --GISEEFLRQHFSIFGKICSV----SMEV--EKGRGFVTFDSPESSDKAITDDCARGFV 205
G E+ LRQ+F FG++ V S+ KG FV F+ PE + A D ++
Sbjct: 59 PHGFFEQQLRQYFRQFGRVLRVRLARSLRTGNSKGYAFVEFEYPEVAKVAA--DTMDNYL 116
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLK--VSLARRQLKVAPINDAASSTT-----WSAIAC 258
F + E + LK V+ A +++ V+ + A + W AC
Sbjct: 117 MFQKVVKATYIPPEKQTLNFFRTSLKKVVNKAGKEIYVSDLTKATQRSVKKQNNWDESAC 176
Query: 259 HQSLKGN-HKDKRHQVIYDD 277
+ N +K K+ Q Y D
Sbjct: 177 QKRTVANLNKIKKLQEKYKD 196
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 89 (36.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 70 (29.7 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEV--EKGRGFVTFDSPES 191
P + G +F++ I + L FS FG I C V + +G GFV F++ E+
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 ANRAI 155
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 89 (36.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F SPE + KA+TE+NG V L V+LA+R+
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 70 (29.7 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 138 PNEKPKGGNTIFVQGA--GISEEFLRQHFSIFGKI--CSVSMEVE--KGRGFVTFDSPES 191
P + G +F++ I + L FS FG I C V + +G GFV F++ E+
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 192 SDKAI 196
+++AI
Sbjct: 151 ANRAI 155
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 82 (33.9 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 45/185 (24%), Positives = 75/185 (40%)
Query: 2 AKYTLTKKSLQAQKAPRPEPERTQASSTLKRPIEAKDAREVARKLLKSGAINPIVRPPKR 61
A Y + L + ++ + S + R E K ++ RK + R K+
Sbjct: 13 APYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD-------RERKK 65
Query: 62 CEQEGFKRPRGLERKLTET---DRSTVSAYQ-PFSAIQPEDSEPVDSK---PKFLKVSKR 114
+ KR R ER+ + + DR Y+ P+S P+ + + K P +K+S+R
Sbjct: 66 SKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSG--PKFNSAIRGKIGLPHSIKLSRR 123
Query: 115 ETNDDRTPV--DKKVYGESLLTRLAPNEKPKGGNTIFVQ--GAGISEEFLRQHFSIFGKI 170
+ ++P DK E + L P E+ T+F A I L + FS GK+
Sbjct: 124 RSRS-KSPFRKDKSPVREPI-DNLTPEERD--ARTVFCMQLAARIRPRDLEEFFSTVGKV 179
Query: 171 CSVSM 175
V M
Sbjct: 180 RDVRM 184
Score = 73 (30.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
I+E+ LR F FG+I S+ + + DS K GF+TF E +
Sbjct: 261 ITEDMLRGIFEPFGRIESIQLMM---------DSETGRSKGY------GFITFSDSECAK 305
Query: 215 KAITEVNGTHVQGVKLKV 232
KA+ ++NG + G +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 298 298 0.00094 115 3 11 23 0.47 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 596 (63 KB)
Total size of DFA: 194 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.83u 0.13s 29.96t Elapsed: 00:00:01
Total cpu time: 29.84u 0.13s 29.97t Elapsed: 00:00:01
Start: Thu Aug 15 14:27:46 2013 End: Thu Aug 15 14:27:47 2013