RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15187
(298 letters)
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 60.0 bits (145), Expect = 1e-12
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 21/97 (21%)
Query: 142 PKGGNTIFVQGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
P+ GNT++V G ++ LR FS FG I +SM+ +
Sbjct: 2 PRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRN--------------------- 40
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
FVT++ ES+D+A+ E+NGT V+ V+LKV++AR+Q
Sbjct: 41 CAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 77
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 57.6 bits (139), Expect = 1e-11
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
+++V ++E L + FS G I S+ + R +T S +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRV----CRDMITRRS-----------LGYAY 46
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
V F P +++A+ +N ++G +++ ++R
Sbjct: 47 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 79
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 53.1 bits (127), Expect = 6e-10
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFV 205
+F++ +EE L+ FS G I S ++ +K + + GFV
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK------------NKAGVLLSMGFGFV 48
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
+ PE + KA+ ++ G V G KL+V ++ R K A
Sbjct: 49 EYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 52.3 bits (125), Expect = 1e-09
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
+ V +++ L F G I + + + G+ F
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY---------------SYGYAF 48
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V F S S +AI +NG V+ +LKVS AR
Sbjct: 49 VDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 80
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 51.9 bits (124), Expect = 1e-09
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 143 KGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
K T++V +EE + + FS G I + M + DK C
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL---------------DKMKKTAC 49
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
FV + S ++ A+ +NGT + ++
Sbjct: 50 GFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 85
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 51.1 bits (122), Expect = 2e-09
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFV 205
+ V G+S+ +++ F+ FG + ++ ++ V
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRS----------------LGTADV 46
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
F+ + KA+ + NG + G + + L
Sbjct: 47 HFERKADALKAMKQYNGVPLDGRPMNIQLV 76
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 51.1 bits (122), Expect = 2e-09
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
++V I+++ L F +G I ++ R +T
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNIL----RDKLTGRP-----------RGV 50
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGV--KLKVSLA 235
FV ++ E + +AI+ +N +G L V LA
Sbjct: 51 AFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 50.5 bits (120), Expect = 5e-09
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
P + V G +E LR+ FS +G I VS+ D+
Sbjct: 4 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---------------DQQSR 48
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKV 232
FV F++ + + +A NG + G +++V
Sbjct: 49 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.4 bits (120), Expect = 5e-09
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
PN + TI V E L++ F FG I + + +K G
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ------------ 48
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
F++F E + +AI V+G + L V A+
Sbjct: 49 ---SKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 86
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 50.3 bits (120), Expect = 6e-09
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 26/103 (25%)
Query: 139 NEKPKGGNTIFVQG---AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
+ + +F+ + + + FS +GKI S+ +GF
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH----KGF------------ 52
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
FV + + ++ A+ +G + G L ++LA
Sbjct: 53 -------AFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEP 88
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 49.6 bits (118), Expect = 1e-08
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P + T++V G +SE L + F G + + M ++ G
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQ------------ 49
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F S E +D AI ++ + G ++V+ A
Sbjct: 50 ---HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 89
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 49.8 bits (118), Expect = 1e-08
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+E + I+VQG ++ + L F G + + DK
Sbjct: 2 PDEDSDN-SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL-------DKE 53
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
V+++ P ++ A+ +G QG KLKVSLAR++
Sbjct: 54 TGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 48.9 bits (116), Expect = 2e-08
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P+ + G IF++ I + L FS FG I S + ++
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS------------- 47
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F++ E++++AI ++NG + K+ V + +
Sbjct: 48 ----KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 86
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 48.6 bits (115), Expect = 2e-08
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
+ V +++E R F G+I S + +K G GF
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ---------------SLGYGF 48
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V + P+ ++KAI +NG +Q +KVS AR
Sbjct: 49 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 48.8 bits (116), Expect = 2e-08
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
K + + I V+ ++ +R+ FS FG++ +V + +
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTV---------RLPKKMTGTGAH---- 50
Query: 199 DCARGFVTFDSPESSDKAITEV-NGTHVQGVKLKVSLARRQLKV 241
GFV F + + + KA + + TH+ G +L + A ++ V
Sbjct: 51 -RGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 93
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 48.4 bits (115), Expect = 3e-08
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 23/102 (22%)
Query: 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
N+ T++ G +G++++ +RQ FS FG+I + +
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR---------------------V 50
Query: 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ FV F + ES+ AI VNGT ++G +K +
Sbjct: 51 FPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 48.1 bits (114), Expect = 3e-08
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 19/95 (20%)
Query: 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
T++V ++E + Q FS G S M E +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-----------------NDPYC 51
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
FV F + A+ +NG + G ++KV+ A
Sbjct: 52 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 86
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 47.7 bits (113), Expect = 5e-08
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 23/99 (23%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
+ + +FV I+EE +R+ F +GK V +
Sbjct: 3 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI---------------------H 41
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
D GF+ ++ ++ A E++ ++G +L+V A
Sbjct: 42 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 80
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 48.5 bits (115), Expect = 5e-08
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 22/100 (22%)
Query: 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK-GRGFVTFDSPESSDKAITD 198
P+ ++++ I+ E + F +G I + + RG
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGT--------------- 48
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+V ++ + A ++G +V L V
Sbjct: 49 ----AYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNAN 84
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 47.4 bits (112), Expect = 7e-08
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDD 199
G +FV+ SEE L + FS +G + + + D
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPI---------------DSLTKKP 49
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
FVTF PE + KA EV+G QG L V + +
Sbjct: 50 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 46.7 bits (110), Expect = 9e-08
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFV 205
IF+ I E+ L FS FG I + R T +S F+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVIL---QTPKIMRDPDTGNS-----------KGYAFI 46
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
F S ++SD AI +NG ++ + VS A ++
Sbjct: 47 NFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 79
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 46.5 bits (110), Expect = 1e-07
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
+ +F+ G ++++ +++ + FG + + ++ + T S
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS----ATGLS-----------KGYA 46
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVA 242
F + +D+AI +NG + KL V A K A
Sbjct: 47 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA 85
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 46.6 bits (110), Expect = 1e-07
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
Query: 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
++V G + ++ L F FG I + + + D
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---------------DYETEKHRGFA 50
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
FV F+ E + AI +N + + G ++V+LA+
Sbjct: 51 FVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM 85
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 45.8 bits (108), Expect = 2e-07
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 22/104 (21%)
Query: 137 APNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDK 194
++K + T+ + I+E+ L++ F +I VS
Sbjct: 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ------------------- 48
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
++ F S ++K + E G + G + + +
Sbjct: 49 -DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 45.4 bits (107), Expect = 2e-07
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
++V G ++++ L Q FS +G+I + + V D+
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV---------------DQVTGVSRGV 50
Query: 203 GFVTFDSPESSDKAITEVNGTHVQG--VKLKVSLA 235
GF+ FD +++AI +NG G + V A
Sbjct: 51 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 85
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 45.8 bits (108), Expect = 2e-07
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
G +F+ ++ L Q F FG + S + ++K
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNL---------------SKCF 62
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV++D+P S+ AI +NG + +LKV L R +
Sbjct: 63 GFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 98
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 45.1 bits (106), Expect = 4e-07
Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
++ G +FV E+ +++ F +G+I ++ + +++ GF
Sbjct: 2 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF-------------- 47
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V +++ + + A +NG + G ++V
Sbjct: 48 -SKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 85
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 44.5 bits (105), Expect = 7e-07
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 19/80 (23%)
Query: 157 EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKA 216
E LR S FG+I + + G V+F PE +D
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGV-------------------ASVSFRDPEEADYC 73
Query: 217 ITEVNGTHVQGVKLKVSLAR 236
I ++G G ++
Sbjct: 74 IQTLDGRWFGGRQITAQAWD 93
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 44.3 bits (104), Expect = 8e-07
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 139 NEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
+E + V + LRQ F FGKI V + +
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFG---------- 54
Query: 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
FVTF++ +D+A +++GT V+G K++V+ A
Sbjct: 55 -------FVTFENSADADRAREKLHGTVVEGRKIEVNNAT 87
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 43.4 bits (102), Expect = 1e-06
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 30/96 (31%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEK------GRGFVTFDSPESSDKAITDD 199
+F+ G ++E LR++F FG++ + + G GFVTF DK +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL--- 59
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
+ + + +A
Sbjct: 60 -------------------AQSRHELDSKTIDPKVA 76
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 42.3 bits (99), Expect = 3e-06
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFV 205
IFV G EE +R++F FG++ S+ + ++ F+
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK---------------RRGFCFI 46
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
TF E K + E +V K ++ +A
Sbjct: 47 TFKEEEPVKKIM-EKKYHNVGLSKCEIKVA 75
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 42.1 bits (98), Expect = 6e-06
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 7/60 (11%)
Query: 144 GGNTIFV-------QGAGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
G + + + F + K + R + F +P S+ A
Sbjct: 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADAR 63
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 41.6 bits (97), Expect = 7e-06
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 26/101 (25%)
Query: 142 PKGGN--TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
P G N I+V I + + F +G I + +
Sbjct: 9 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL--------------------KN 48
Query: 198 DDCARG--FVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
FV F+ P ++ A+ +G G +L+V R
Sbjct: 49 RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 89
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 41.2 bits (96), Expect = 1e-05
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 20/101 (19%)
Query: 141 KPKGGNTIFVQG--AGISEEFLRQH-FSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
+P +TI++ I ++ L++ +IF + + +
Sbjct: 1 RPN--HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDIL---------------VSRSL 43
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ FV F S+ A+ + G +++ A+
Sbjct: 44 KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 84
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 40.5 bits (94), Expect = 1e-05
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFV 205
IFV G + E ++ +F FGK+ + T GFV
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM----FDKTTNRH-----------RGFGFV 46
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
TF+S + +K E++ + ++ A
Sbjct: 47 TFESEDIVEKVC-EIHFHEINNKMVECKKA 75
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 40.4 bits (94), Expect = 1e-05
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFV 205
+F+ G +++ L+ +FS FG++ ++++ D GFV
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL---------------DPITGRSRGFGFV 46
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
F ES DK + + + G + A
Sbjct: 47 LFKESESVDKVM-DQKEHKLNGKVIDPKRA 75
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 40.8 bits (95), Expect = 1e-05
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 24/97 (24%)
Query: 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
G + +FV ++E+ LR+ FS +G + V A
Sbjct: 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDV--------------------FIPKPFRA 43
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
FVTF + + ++G+ + +S A +
Sbjct: 44 FAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK 78
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 40.9 bits (95), Expect = 2e-05
Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 23/103 (22%)
Query: 144 GGNTIFVQG---AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDC 200
G + + V ++ + L F ++G + V + + +
Sbjct: 1 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI--------------------LFNKK 40
Query: 201 ARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAP 243
V + A++ +NG + G ++++L++ Q P
Sbjct: 41 ENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLP 83
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 40.8 bits (95), Expect = 2e-05
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 21/94 (22%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
++ + L Q FS FG + + + + + + P S+
Sbjct: 19 VTLDVLHQIFSKFGTVLKIITFTKNNQFQ-------------------ALLQYADPVSAQ 59
Query: 215 KAITEVNGTHVQ--GVKLKVSLARRQLKVAPIND 246
A ++G ++ L++ ++ N+
Sbjct: 60 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNN 93
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 39.8 bits (92), Expect = 2e-05
Identities = 8/92 (8%), Positives = 25/92 (27%), Gaps = 17/92 (18%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
T+++ ++ +R + +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLP---------------SLRFNTSRRFAY 47
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ S E + + ++NG ++G L ++
Sbjct: 48 IDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 79
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 38.9 bits (90), Expect = 5e-05
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 17/101 (16%)
Query: 137 APNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDK 194
+ G I VQ +S + + F + I +G T
Sbjct: 1 GASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPT--------- 51
Query: 195 AITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
V F+S + + A+ ++N + K+K+ L
Sbjct: 52 ------GEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 38.8 bits (90), Expect = 6e-05
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 146 NTIFVQGAGIS-EEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
+ V G + ++ F+ +G I M + + S + KA+
Sbjct: 5 TWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL 56
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.3 bits (91), Expect = 6e-05
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 146 NTIFVQGAG----ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAI 196
++ V G +S L G + ++ M K F + + E S +A
Sbjct: 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAY 73
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.0 bits (90), Expect = 7e-05
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 17/95 (17%)
Query: 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
++++ ++E L F+ F + ++ +
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQF---------------RMMTGRMRGQA 63
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
F+TF + E + +A+ VNG + G L + + +
Sbjct: 64 FITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 98
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 37.8 bits (87), Expect = 9e-05
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 148 IFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFV 205
++++G G +++ L + +GKI S ++K GFV
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNK---------------CKGYGFV 45
Query: 206 TFDSPESSDKAITEVNGTHVQGVKLK 231
FDSP ++ KA+T + + VQ K
Sbjct: 46 DFDSPSAAQKAVTALKASGVQAQMAK 71
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 38.4 bits (89), Expect = 9e-05
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 145 GNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCAR 202
+ + V G +E+ L+++FS FG++ V ++ D
Sbjct: 8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK---------------DLKTGHSKGF 52
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F E+ K +++ + + G L +
Sbjct: 53 GFVRFTEYETQVKVMSQRHM--IDGRWCDCKLPNSK 86
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 37.9 bits (87), Expect = 2e-04
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N +FV G +++ + + FGK + V S S A
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK-VVINNSTSYAGSQGPSASA-------- 59
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVS 233
+VT+ E + +AI VN V G LK S
Sbjct: 60 YVTYIRSEDALRAIQCVNNVVVDGRTLKAS 89
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 38.7 bits (89), Expect = 2e-04
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 17/103 (16%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
N +P + V + E LRQ F +G I SV + ++
Sbjct: 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ------------ 82
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFV F S S+ +AI +NG ++ +LKV+LA
Sbjct: 83 ---SRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 37.0 bits (85), Expect = 2e-04
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 18/91 (19%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
IFV G E LR +F +GKI + + D+ F
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT---------------DRGSGKKRGFAF 48
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
VTFD +S DK + V G +V A
Sbjct: 49 VTFDDHDSVDKIV-IQKYHTVNGHNCEVRKA 78
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 37.3 bits (86), Expect = 2e-04
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 23/92 (25%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
++V+ SEE + + F+ V+K R + F
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAV--ERVKKIRDY-------------------AF 48
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
V F + E + +A+ +NG + G ++V+LA+
Sbjct: 49 VHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 80
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 37.4 bits (86), Expect = 2e-04
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 30/108 (27%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEV------EKGRGFVTFDSP 189
+ + +F+ G +EE LR ++ +GK+ + +G GFVTF S
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 72
Query: 190 ESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARR 237
D A+ + G ++ A
Sbjct: 73 AEVDAAM----------------------AARPHSIDGRVVEPKRAVA 98
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 37.0 bits (85), Expect = 3e-04
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 203 GFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
GFVTF++ + + A+ +NG V G +++V A +
Sbjct: 50 GFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.9 bits (85), Expect = 3e-04
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 155 ISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSD 214
EE + +G++ +++ D +V F E ++
Sbjct: 39 FFEEVFTEMEEKYGEVEEMNV----------------CDNLGDHLVGNVYVKFRREEDAE 82
Query: 215 KAITEVNGTHVQGVKLKVSL 234
KA+ ++N G + L
Sbjct: 83 KAVIDLNNRWFNGQPIHAEL 102
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 36.7 bits (84), Expect = 4e-04
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 23/105 (21%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
G T+F++ EE L + FG + V + +
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVL---------------HPDTE 47
Query: 198 DDCARGFVTFDSPESSDKAITEVN------GTHVQGVKLKVSLAR 236
F F + E++ K + + G + G +LKV LA
Sbjct: 48 HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 92
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 36.5 bits (84), Expect = 5e-04
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
+ + + T+F A I L FS GK+ V + D+
Sbjct: 11 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS---------------DRN 55
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+V F +S AI + G + GV + V ++ +
Sbjct: 56 SRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 97
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 36.2 bits (83), Expect = 5e-04
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 25/102 (24%)
Query: 141 KPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITD 198
K ++V G S L + F FG I ++
Sbjct: 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH---------------------VK 51
Query: 199 DCARGFVTFDSPESSDKAITEVNGTHVQG--VKLKVSLARRQ 238
+ ++ ++S +++ A ++ G + G +L+V A+
Sbjct: 52 GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 36.2 bits (83), Expect = 5e-04
Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 22/101 (21%)
Query: 141 KPKGGNTIFVQG---AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
+ + + + L Q FG I + + + F+ + E + A+
Sbjct: 4 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAV- 62
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
V G ++V L+++
Sbjct: 63 ------------------DYYTTTPALVFGKPVRVHLSQKY 85
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 37.7 bits (86), Expect = 7e-04
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSME------VEKGRGFVTFDSPES 191
++P+ +F+ G ++E LR HF +G + + +G GFVT+ + E
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 192 SDKAI 196
D A+
Sbjct: 61 VDAAM 65
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.1 bits (83), Expect = 7e-04
Identities = 13/67 (19%), Positives = 19/67 (28%)
Query: 172 SVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLK 231
V E K + + P D C + FV F S KA+ + G +
Sbjct: 30 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVV 89
Query: 232 VSLARRQ 238
Sbjct: 90 TKYCDPD 96
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.9 bits (82), Expect = 8e-04
Identities = 13/102 (12%), Positives = 25/102 (24%), Gaps = 24/102 (23%)
Query: 144 GGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
G + I V+ + + + + +
Sbjct: 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD----------------------RNKR 41
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAP 243
FVT + E + AI + +G L V L +
Sbjct: 42 TAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCS 83
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 35.4 bits (81), Expect = 8e-04
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 30/104 (28%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE------KGRGFVTFDSPES 191
++P+ +F+ G ++E LR HF +G + + + +G GFVT+ + E
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 192 SDKAITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLA 235
D A+ V G ++ A
Sbjct: 61 VDAAM----------------------NARPHKVDGRVVEPKRA 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.9 bits (82), Expect = 0.001
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
++FV +EE L+ FS G + S + ++ G GF
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK---------------PKGYGF 54
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ E++ A+ +NG G L+V A +
Sbjct: 55 CEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 35.1 bits (80), Expect = 0.002
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 18/103 (17%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
+K IFV G ++ LR++F FG I + ++
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT---------------G 49
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLK 240
GFVT ++++A + N + G K V+LA K
Sbjct: 50 KSRGYGFVTMADRAAAERACKDPNPI-IDGRKANVNLAYLGAK 91
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 34.4 bits (78), Expect = 0.003
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 24/99 (24%)
Query: 142 PKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDD 199
+ + V G S + L+ H G +C +
Sbjct: 12 RRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADV----------------------QK 49
Query: 200 CARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
G V + E + A+ +++ T + + + S R
Sbjct: 50 DGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVY 88
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 34.0 bits (77), Expect = 0.003
Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 18/97 (18%)
Query: 145 GNTIFVQG---AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCA 201
G I ++ + E LR+ F FG I +++ K + +
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG--------------QKEHSFNNC 49
Query: 202 RGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
F+ F++ +S+++A+ ++N + + ++ VSLA ++
Sbjct: 50 CAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 85
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 33.1 bits (75), Expect = 0.007
Identities = 11/102 (10%), Positives = 27/102 (26%), Gaps = 29/102 (28%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVE--------KGRGFVTFDSPESSDKAI 196
+F+ G E + + + + + +G FV ++S ++ A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 197 TDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
+ G ++ V A +
Sbjct: 63 -------------------RKLMPGRIQLWGHQIAVDWAEPE 85
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.4 bits (73), Expect = 0.011
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 147 TIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGF 204
++V GI+EE + F+ ++ ++ I D F
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQA----------PGNPVLAVQINQDKNFAF 52
Query: 205 VTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
+ F S + + +A+ +G QG LK+
Sbjct: 53 LEFRSVDETTQAMA-FDGIIFQGQSLKIRRPH 83
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 32.4 bits (73), Expect = 0.016
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 21/103 (20%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
P P T F+ ++EE +++ F
Sbjct: 11 PKSPP---YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPER------------ 55
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
G+ F+ +S A+ +N + +++V +A +
Sbjct: 56 ---LKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 31.3 bits (70), Expect = 0.048
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPES 191
E+ G F E L FS G+I + G + F
Sbjct: 6 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAK 59
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 30.2 bits (67), Expect = 0.058
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 24/95 (25%)
Query: 146 NTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARG 203
N + V G S + L+ H G +C + G
Sbjct: 1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADV----------------------YRDGTG 38
Query: 204 FVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQ 238
V F E A+ +++ T + + + + R +
Sbjct: 39 VVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 73
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 30.3 bits (67), Expect = 0.10
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 23/108 (21%)
Query: 138 PNEKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKA 195
+ I + AG +++ FS FG + V + V F P + KA
Sbjct: 3 SGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKA 62
Query: 196 ITDDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLARRQLKVAP 243
+ + V L + A + A
Sbjct: 63 FR---------------------HLAYSKFHHVPLYLEWAPIGVFGAA 89
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 29.4 bits (65), Expect = 0.19
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 18/99 (18%)
Query: 140 EKPKGGNTIFVQG--AGISEEFLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAIT 197
++ + +++ + E+ L FG++ S + +
Sbjct: 13 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS----------------SG 56
Query: 198 DDCARGFVTFDSPESSDKAITEVNGTHVQGVKLKVSLAR 236
GF +S E + I NG ++ +
Sbjct: 57 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 95
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus
subtilis [TaxId: 1423]}
Length = 179
Score = 26.3 bits (57), Expect = 3.7
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 26 ASSTLKRPIEAKDAREVARKLLKSG 50
S+ + A E+ + + G
Sbjct: 9 GSNPGGNEAYKRKAAELGVYMAEQG 33
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit
{Escherichia coli [TaxId: 562]}
Length = 126
Score = 25.7 bits (56), Expect = 4.3
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 172 SVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDS 209
S+ ++V++GRG+V + S++ D+ G + D+
Sbjct: 89 SMRIKVQRGRGYVPASTRIHSEE---DERPIGRLLVDA 123
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 181
Score = 25.8 bits (56), Expect = 5.1
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 26 ASSTLKRPIEAKDAREVARKLLKSG 50
S + R + + A E+ +L+K
Sbjct: 10 GSHSGHREVFSDAAIELGNELVKRK 34
>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of
bifunctional FAD synthetase {Thermotoga maritima [TaxId:
2336]}
Length = 130
Score = 25.4 bits (55), Expect = 6.0
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 159 FLRQHFSIFGKICSVSMEVEKGRGFVTFDSPESSDKAITDDCARGFVTFDSPESS 213
L ++G+ + + ++ R FDS E AI D D +S
Sbjct: 76 ILDFEGDLYGQRLKLEV-LKFMRDEKKFDSIEELKAAIDQDVKSARNMIDDIINS 129
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 147
Score = 25.4 bits (55), Expect = 7.0
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 146 NTIFVQGAGISEEFLRQHFSIFGKICSVSME-VEKGRGFVTFDSPESSDKAITDDCARGF 204
N + E + F +++ V R FDS ES AI D
Sbjct: 67 NPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAK 126
Query: 205 VTFDSPE 211
+ PE
Sbjct: 127 KRLELPE 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.366
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,025,174
Number of extensions: 45761
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 78
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.8 bits)