BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15189
         (150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
           Lactose (Michaelis Complex)
 pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
           (Michaelis Complex)
          Length = 648

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 26/140 (18%)

Query: 36  NHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDL-IYLGRKKLSE-----KPDTW 89
           N D VMV   D R+E+ F   L   + +        W+  I +   + S       P   
Sbjct: 55  NVDGVMVAIADARYETSFANSLIDTVAKYSVDDGETWETQIAIKNSRASSVSRVVDPTVI 114

Query: 90  VSGSR-YLVEASY----SYWT-------------LGYLLSRQGARKLTQARPLSNLLPVD 131
           V G++ Y++  SY    SYWT             +G +       K+T +    + + + 
Sbjct: 115 VKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLK 174

Query: 132 EFLPL-LSGKHPEDLGLSGA 150
           EF P  + G H     L GA
Sbjct: 175 EFFPAEMEGMHTNQF-LGGA 193


>pdb|2WYO|A Chain A, Trypanosoma Brucei Glutathione Synthetase
 pdb|2WYO|B Chain B, Trypanosoma Brucei Glutathione Synthetase
 pdb|2WYO|C Chain C, Trypanosoma Brucei Glutathione Synthetase
 pdb|2WYO|D Chain D, Trypanosoma Brucei Glutathione Synthetase
          Length = 562

 Score = 27.7 bits (60), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 14  MKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESF----FRQKLATILKEL 64
           + +GE G       +WNE VDN       L D ++  +     F  KL  +L+E+
Sbjct: 56  ISRGEFGTLCCMQPLWNEAVDNTARNFTFLRDALQETAASDVNFTGKLLNMLQEV 110


>pdb|3U44|B Chain B, Crystal Structure Of Addab-Dna Complex
 pdb|3U4Q|B Chain B, Structure Of Addab-Dna Complex At 2.8 Angstroms
          Length = 1166

 Score = 27.3 bits (59), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 2   LPGYADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATIL 61
           +P   D   +R    G I     H   W+ V+    + V ++ DD      F+Q +    
Sbjct: 514 VPLKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLFQQMIEAGA 573

Query: 62  KELKTKTL-PAWDLIYLGRKKLS 83
           + L    + PA D +++G   LS
Sbjct: 574 ESLTFSLIPPALDQVFVGNMDLS 596


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,012,111
Number of Sequences: 62578
Number of extensions: 193009
Number of successful extensions: 386
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 8
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)