Query psy15189
Match_columns 150
No_of_seqs 174 out of 813
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:51:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4179|consensus 100.0 1.7E-40 3.7E-45 266.7 8.8 145 1-146 343-487 (568)
2 PF01755 Glyco_transf_25: Glyc 100.0 6.6E-31 1.4E-35 197.0 9.1 125 4-134 53-200 (200)
3 COG3306 Glycosyltransferase in 99.9 1.4E-27 3E-32 185.8 6.9 131 8-139 58-192 (255)
4 cd06532 Glyco_transf_25 Glycos 99.9 5.8E-27 1.3E-31 165.3 7.0 77 6-134 52-128 (128)
5 PHA02688 ORF059 IMV protein VP 98.9 1.2E-08 2.6E-13 80.8 9.4 104 13-121 88-200 (323)
6 PF03213 Pox_P35: Poxvirus P35 98.6 2.6E-07 5.7E-12 73.3 9.5 95 22-121 99-202 (325)
7 PF02434 Fringe: Fringe-like; 96.4 0.0048 1E-07 48.2 4.3 114 17-140 69-193 (252)
8 cd02514 GT13_GLCNAC-TI GT13_GL 96.1 0.06 1.3E-06 43.9 9.5 99 28-135 88-188 (334)
9 PLN03153 hypothetical protein; 95.0 0.2 4.3E-06 43.0 8.7 72 35-121 209-280 (537)
10 PF03071 GNT-I: GNT-I family; 94.9 0.25 5.4E-06 41.6 9.2 104 23-135 176-283 (434)
11 PF04666 Glyco_transf_54: N-Ac 94.7 0.095 2.1E-06 42.0 6.0 51 25-79 159-209 (297)
12 PF01762 Galactosyl_T: Galacto 90.9 1.4 3E-05 32.6 7.1 105 21-132 63-177 (195)
13 PF05060 MGAT2: N-acetylglucos 90.0 3.6 7.8E-05 33.9 9.2 91 27-121 155-249 (356)
14 KOG2287|consensus 88.7 1.8 4E-05 35.4 6.7 108 23-139 172-291 (349)
15 TIGR01556 rhamnosyltran L-rham 82.4 4.4 9.4E-05 31.3 5.8 45 17-61 54-98 (281)
16 KOG2246|consensus 80.2 7.1 0.00015 32.3 6.5 81 21-121 150-233 (364)
17 KOG2791|consensus 78.8 10 0.00022 31.4 6.7 90 28-122 242-334 (455)
18 cd04185 GT_2_like_b Subfamily 77.0 7.3 0.00016 28.1 5.2 36 26-61 69-104 (202)
19 cd04186 GT_2_like_c Subfamily 66.9 11 0.00024 25.7 4.1 37 19-58 60-96 (166)
20 PF00535 Glycos_transf_2: Glyc 64.1 15 0.00032 24.8 4.3 26 37-62 79-104 (169)
21 KOG1413|consensus 62.8 26 0.00056 29.1 5.8 35 32-66 163-197 (411)
22 PRK05710 glutamyl-Q tRNA(Asp) 62.5 38 0.00083 27.2 6.8 68 4-73 5-72 (299)
23 cd00808 GluRS_core catalytic c 61.3 48 0.001 25.8 6.9 64 9-74 6-69 (239)
24 cd04184 GT2_RfbC_Mx_like Myxoc 57.9 46 0.001 23.7 6.1 54 17-78 67-120 (202)
25 cd06423 CESA_like CESA_like is 57.0 18 0.00038 24.4 3.6 38 17-57 62-99 (180)
26 cd02526 GT2_RfbF_like RfbF is 56.3 24 0.00052 26.0 4.5 40 18-57 57-96 (237)
27 cd06433 GT_2_WfgS_like WfgS an 52.4 63 0.0014 22.6 6.0 19 36-54 75-93 (202)
28 cd04196 GT_2_like_d Subfamily 52.3 49 0.0011 23.6 5.5 39 17-58 63-101 (214)
29 PRK03359 putative electron tra 49.7 69 0.0015 25.2 6.2 49 27-81 71-122 (256)
30 PRK12342 hypothetical protein; 48.8 73 0.0016 25.0 6.2 47 28-80 69-118 (254)
31 COG1216 Predicted glycosyltran 47.8 37 0.0008 26.7 4.5 48 16-63 64-111 (305)
32 COG2047 Uncharacterized protei 45.3 12 0.00026 29.0 1.3 17 105-121 191-207 (258)
33 cd06420 GT2_Chondriotin_Pol_N 45.1 63 0.0014 22.5 5.0 22 36-57 79-100 (182)
34 cd04179 DPM_DPG-synthase_like 44.4 54 0.0012 22.9 4.6 36 17-55 63-98 (185)
35 PF13641 Glyco_tranf_2_3: Glyc 44.4 30 0.00066 25.3 3.4 25 37-61 87-111 (228)
36 cd04192 GT_2_like_e Subfamily 43.5 38 0.00082 24.5 3.8 24 36-59 82-105 (229)
37 cd00761 Glyco_tranf_GTA_type G 42.7 48 0.001 21.5 3.9 22 36-57 77-98 (156)
38 PLN03133 beta-1,3-galactosyltr 41.0 1.7E+02 0.0036 26.3 7.8 34 104-138 542-579 (636)
39 cd06434 GT2_HAS Hyaluronan syn 39.9 56 0.0012 23.9 4.2 23 36-58 77-99 (235)
40 cd04195 GT2_AmsE_like GT2_AmsE 39.8 76 0.0017 22.5 4.8 39 18-59 65-103 (201)
41 PF10008 DUF2251: Uncharacteri 39.3 18 0.00038 24.3 1.2 12 37-48 10-21 (97)
42 cd06421 CESA_CelA_like CESA_Ce 38.0 49 0.0011 24.1 3.7 25 36-60 84-108 (234)
43 PF12780 AAA_8: P-loop contain 36.8 74 0.0016 25.1 4.6 36 27-62 79-114 (268)
44 COG2086 FixA Electron transfer 34.0 1.5E+02 0.0032 23.4 5.8 49 27-81 70-121 (260)
45 PF12904 Collagen_bind_2: Puta 33.6 23 0.00051 23.4 1.1 10 36-45 84-93 (93)
46 PTZ00210 UDP-GlcNAc-dependent 33.6 2.6E+02 0.0057 23.4 7.4 92 15-124 176-270 (382)
47 PF13506 Glyco_transf_21: Glyc 32.9 1E+02 0.0022 22.3 4.5 28 35-65 30-57 (175)
48 cd02525 Succinoglycan_BP_ExoA 32.2 76 0.0016 23.2 3.9 23 36-58 81-103 (249)
49 cd06438 EpsO_like EpsO protein 31.5 1.6E+02 0.0036 20.7 5.5 26 34-59 79-104 (183)
50 TIGR03472 HpnI hopanoid biosyn 30.3 91 0.002 25.3 4.3 26 33-58 123-148 (373)
51 PLN03193 beta-1,3-galactosyltr 30.3 3.4E+02 0.0074 23.0 7.9 95 36-138 236-340 (408)
52 cd06439 CESA_like_1 CESA_like_ 29.9 79 0.0017 23.4 3.7 38 20-60 96-133 (251)
53 cd06435 CESA_NdvC_like NdvC_li 29.8 67 0.0015 23.6 3.2 23 36-58 84-106 (236)
54 cd02510 pp-GalNAc-T pp-GalNAc- 28.7 1.3E+02 0.0028 23.3 4.8 38 17-57 67-104 (299)
55 cd02522 GT_2_like_a GT_2_like_ 27.8 93 0.002 22.4 3.6 21 37-57 73-93 (221)
56 TIGR03469 HonB hopene-associat 27.3 2.2E+02 0.0049 23.2 6.1 38 19-56 114-153 (384)
57 PHA00149 DNA encapsidation pro 27.1 41 0.00089 27.3 1.6 64 16-80 88-159 (331)
58 PF13632 Glyco_trans_2_3: Glyc 27.1 82 0.0018 22.4 3.2 22 39-60 1-22 (193)
59 PF14618 DUF4452: Domain of un 27.1 20 0.00042 26.4 -0.2 15 40-54 50-64 (165)
60 cd02520 Glucosylceramide_synth 26.4 1E+02 0.0023 22.0 3.7 23 35-57 85-107 (196)
61 PF12444 Sox_N: Sox developmen 25.5 77 0.0017 20.6 2.4 25 46-76 55-79 (84)
62 cd00418 GlxRS_core catalytic c 25.0 3.3E+02 0.0071 21.0 6.9 64 9-74 6-69 (230)
63 PRK14895 gltX glutamyl-tRNA sy 24.6 3.6E+02 0.0078 23.6 7.0 68 4-73 4-71 (513)
64 COG1497 Predicted transcriptio 24.4 56 0.0012 25.7 1.9 20 103-122 58-77 (260)
65 PF13712 Glyco_tranf_2_5: Glyc 23.8 1.4E+02 0.0031 22.5 4.1 46 27-77 44-91 (217)
66 PF11972 HTH_13: HTH DNA bindi 23.7 63 0.0014 19.2 1.6 14 109-122 24-37 (54)
67 cd04190 Chitin_synth_C C-termi 23.0 2.7E+02 0.006 20.8 5.6 25 35-59 72-96 (244)
68 KOG3275|consensus 22.6 34 0.00074 23.8 0.4 21 30-50 21-41 (127)
69 cd02511 Beta4Glucosyltransfera 21.9 1.5E+02 0.0032 22.0 3.8 26 37-62 72-97 (229)
70 KOG3708|consensus 21.6 3.7E+02 0.008 23.8 6.3 69 31-121 92-160 (681)
71 COG4342 Uncharacterized protei 21.6 58 0.0012 25.9 1.5 31 105-135 92-122 (291)
72 PF06076 Orthopox_F14: Orthopo 21.4 1E+02 0.0022 18.9 2.2 19 46-64 50-68 (73)
73 PHA02627 hypothetical protein; 21.2 1E+02 0.0022 18.9 2.2 19 46-64 50-68 (73)
74 KOG2703|consensus 20.7 2E+02 0.0043 24.4 4.5 36 12-47 376-411 (460)
75 PF05894 Podovirus_Gp16: Podov 20.6 39 0.00084 27.6 0.4 63 16-79 89-159 (333)
76 PRK11204 N-glycosyltransferase 20.5 1.8E+02 0.0039 23.8 4.3 25 36-60 134-158 (420)
77 PF03367 zf-ZPR1: ZPR1 zinc-fi 20.3 93 0.002 22.6 2.3 22 26-47 133-154 (161)
78 PF03445 DUF294: Putative nucl 20.1 79 0.0017 22.1 1.9 34 35-68 67-102 (138)
79 cd00807 GlnRS_core catalytic c 20.1 4.2E+02 0.0092 20.6 7.0 67 8-76 5-71 (238)
No 1
>KOG4179|consensus
Probab=100.00 E-value=1.7e-40 Score=266.74 Aligned_cols=145 Identities=59% Similarity=1.083 Sum_probs=138.9
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccc
Q psy15189 1 MLPGYADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRK 80 (150)
Q Consensus 1 ~~~~~~~~~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~ 80 (150)
|||||++||++|+||.|||||+|||+++|+.+++.+.+-+||||||+.|..+|...+.++++++..... +||+||+|++
T Consensus 343 ~LpGY~DPys~Rplt~GEiGCFLSHY~iW~evV~r~l~kvlvfEDD~RFe~~f~~rl~~lm~d~~~~~~-~wdLIY~GRK 421 (568)
T KOG4179|consen 343 MLPGYRDPYSGRPLTKGEIGCFLSHYNIWKEVVDRGLEKVLVFEDDLRFEHDFRTRLMRLMQDVDAEHL-DWDLIYLGRK 421 (568)
T ss_pred ecCCccCcccCCcccCcceeeehhHHHHHHHHHHhccceEEEecccccccHHHHHHHHHHHHHHHhhcC-CceEEEechh
Confidence 799999999999999999999999999999999999999999999999999999999999999988776 9999999999
Q ss_pred cCCCCCCceecCcceEEeeCCcceeEEeeecHHHHHHHHhhCCCCCCchhhhhhHHHHccCCCccc
Q psy15189 81 KLSEKPDTWVSGSRYLVEASYSYWTLGYLLSRQGARKLTQARPLSNLLPVDEFLPLLSGKHPEDLG 146 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~t~aY~Is~~~A~klL~~~~~~~~~pvD~~l~~~f~~~~~~~~ 146 (150)
+.+...++++++.++|+.++++++|-||+||-+||+|||...|..+.+|||.|+++||++||...|
T Consensus 422 r~~~e~E~av~~~~nLv~a~YSYWTLgYvisL~GArKLlaa~Pl~kmlPVDEfLPiMfdkHPn~~~ 487 (568)
T KOG4179|consen 422 RMQEEEEKAVENVRNLVEAGYSYWTLGYVISLQGARKLLAANPLKKMLPVDEFLPIMFDKHPNKEY 487 (568)
T ss_pred hcCchhhhcccccCCceeccccceehhhHhhhhhHHHhhccCchhccCchhhhhhhhhccCccHHH
Confidence 988877889999999999999999999999999999999999998899999999999999999665
No 2
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=99.97 E-value=6.6e-31 Score=197.02 Aligned_cols=125 Identities=41% Similarity=0.689 Sum_probs=94.0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCC
Q psy15189 4 GYADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLS 83 (150)
Q Consensus 4 ~~~~~~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~ 83 (150)
....++.++.||+||+||++||+++|++|+++|.+++|||||||.+.++|.+.++.+++.++ +++++.+++....
T Consensus 53 ~~~~~~~~~~lt~gEiGC~lSH~~~w~~~v~~~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~-----~~~~l~l~~~~~~ 127 (200)
T PF01755_consen 53 ELFKKRYGRPLTPGEIGCALSHIKAWQRIVDSGLEYALILEDDVIFDPDFKEFLEEILSHIP-----DWDFLRLGGWKDN 127 (200)
T ss_pred hhhhccccccCCcceEeehhhHHHHHHHHHHcCCCeEEEEeccccccccHHHHHHHHHhhcc-----cccchhhcccccc
Confidence 44566778999999999999999999999999999999999999999999999988877653 6778877442110
Q ss_pred C---------C------C-----Cceec--CcceEE-eeCCcceeEEeeecHHHHHHHHhhCCCCCCchhhhhh
Q psy15189 84 E---------K------P-----DTWVS--GSRYLV-EASYSYWTLGYLLSRQGARKLTQARPLSNLLPVDEFL 134 (150)
Q Consensus 84 ~---------~------~-----~~~~~--~~~~l~-~~~~~~~t~aY~Is~~~A~klL~~~~~~~~~pvD~~l 134 (150)
. . . ...+. +...++ ....+.||+||+|||+||+|||+... ....|||.+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~aY~Is~~gA~kLL~~~~-~~~~pvD~~m 200 (200)
T PF01755_consen 128 SYSPGDIFLSRLSTFLSRSKRYKRKPIPPFGSRKLIRPAKYPYGTCAYLISRKGARKLLEASK-PIRLPVDIFM 200 (200)
T ss_pred ccccccccceeeeehhhhhhhcccCcccccCCceEEeecCCCCcceeeeeCHHHHHHHHHhCc-CCCccCcCCC
Confidence 0 0 0 00010 111122 34567899999999999999999953 2238999875
No 3
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.4e-27 Score=185.78 Aligned_cols=131 Identities=31% Similarity=0.404 Sum_probs=95.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHh-hhCCCCCccEEEeccccCCCCC
Q psy15189 8 PYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKEL-KTKTLPAWDLIYLGRKKLSEKP 86 (150)
Q Consensus 8 ~~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~-~~~~~~~~dii~L~~~~~~~~~ 86 (150)
.+.++.|++||+||++||+.+|++|+++|.++++||||||+|.++|.+.+.+.+... .-.+. +|+++++.........
T Consensus 58 ~~~~~~ls~gEiGC~lSH~~lw~~~~~~~~~yi~I~EDDV~l~~~f~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 136 (255)
T COG3306 58 LYEGRRLSPGEIGCYLSHLKLWKKALEENLPYILILEDDVVLGEDFEEFLEDDLKLPVRFLGD-DIDIHRLETFLSPNPL 136 (255)
T ss_pred hhhccccCchhHHHHHHHHHHHHHHHhCCCCeEEEecccccccccHHHHHHHHHhhhhhccch-HHHHHHHHHhccccee
Confidence 477899999999999999999999999999999999999999999999888766552 22233 6777766543222110
Q ss_pred -CceecCcceEEe-eCCcceeEEeeecHHHHHHHHhhCC-CCCCchhhhhhHHHHc
Q psy15189 87 -DTWVSGSRYLVE-ASYSYWTLGYLLSRQGARKLTQARP-LSNLLPVDEFLPLLSG 139 (150)
Q Consensus 87 -~~~~~~~~~l~~-~~~~~~t~aY~Is~~~A~klL~~~~-~~~~~pvD~~l~~~f~ 139 (150)
.......+.+.. ..++.||+||+||++||++||+... ..+..|||.++..-|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~gt~gYiis~~aAk~fl~~~~~~~~~~pvD~~~~~~~~ 192 (255)
T COG3306 137 AFNAVFIGRNFPLLNSYHLGTAGYIISRKAAKKFLELTESFKVVLPVDWFMFLEFL 192 (255)
T ss_pred ecccccccccchhhhhcccCccceeecHHHHHHHHHHhhhcccccChhHHHhhhhc
Confidence 000111112221 2357899999999999999999864 2356899999875554
No 4
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=99.94 E-value=5.8e-27 Score=165.27 Aligned_cols=77 Identities=48% Similarity=0.824 Sum_probs=69.6
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCC
Q psy15189 6 ADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEK 85 (150)
Q Consensus 6 ~~~~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~ 85 (150)
..++.++.|++||+||++||+++|+++++++.+++||||||+.|.++
T Consensus 52 ~~~~~~~~l~~gEiGC~lSH~~~w~~~~~~~~~~alIlEDDv~~~~~--------------------------------- 98 (128)
T cd06532 52 FLPRYGRPLTPGEIGCFLSHYKLWQKIVESNLEYALILEDDAILDPD--------------------------------- 98 (128)
T ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCeEEEEccCcEECCC---------------------------------
Confidence 35678999999999999999999999999999999999999999876
Q ss_pred CCceecCcceEEeeCCcceeEEeeecHHHHHHHHhhCCCCCCchhhhhh
Q psy15189 86 PDTWVSGSRYLVEASYSYWTLGYLLSRQGARKLTQARPLSNLLPVDEFL 134 (150)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~t~aY~Is~~~A~klL~~~~~~~~~pvD~~l 134 (150)
||+||+||++||++||+... .+..|||.|+
T Consensus 99 ------------------~~~~Y~vs~~~A~~ll~~~~-~~~~pvD~~~ 128 (128)
T cd06532 99 ------------------GTAGYLVSRKGAKKLLAALE-PIDLPVDVFL 128 (128)
T ss_pred ------------------CceEEEeCHHHHHHHHHhCC-CccccccccC
Confidence 79999999999999999965 2458999874
No 5
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=98.89 E-value=1.2e-08 Score=80.80 Aligned_cols=104 Identities=20% Similarity=0.334 Sum_probs=72.3
Q ss_pred CCCchhHHHHHHHHHHHHHHH-----HcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCC
Q psy15189 13 PMKKGEIGCFLSHYNIWNEVV-----DNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPD 87 (150)
Q Consensus 13 ~lt~geiGC~lSH~~~w~~~~-----~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~ 87 (150)
.-|.....|..+|+.+|+... +.+.++++|+|||..+.+ ...+..++..+.. .+||+++|...-.....+
T Consensus 88 ~Ct~etk~sia~HlsLWes~~~~~~k~~~~~yivVlEDDnTi~~--~~~~~~~I~~M~~---n~idilQLre~~~~~~~~ 162 (323)
T PHA02688 88 LCTEETKRSIARHLSLWESYANADIKDKEDEYIVVVEDDNTLRD--ITTLHPIIKAMKE---KNIDILQLRETLHNNNVR 162 (323)
T ss_pred cCcHHHHHHHHHHHHHHHhhccCCccccCCCeEEEEcCCCcccc--cHHHHHHHHHHHh---cCeEEEEeehhhhCCccc
Confidence 445667889999999999433 233589999999999996 4456667776654 279999995321111111
Q ss_pred c--eecC--cceEEeeCCcceeEEeeecHHHHHHHHhh
Q psy15189 88 T--WVSG--SRYLVEASYSYWTLGYLLSRQGARKLTQA 121 (150)
Q Consensus 88 ~--~~~~--~~~l~~~~~~~~t~aY~Is~~~A~klL~~ 121 (150)
. ..++ .-..+..++..+..||+|+..+|+||.+.
T Consensus 163 ~~~~~~~~~~~~~Y~ggydvSLsAYIIr~~~a~kl~~~ 200 (323)
T PHA02688 163 TLLNQEGNPALYSYTGGYDVSLSAYIIRVSTAKKLYDE 200 (323)
T ss_pred ccccCCCCcceEEecCCcceeeEEEEEeHHHHHHHHHH
Confidence 1 1111 22445667888999999999999999987
No 6
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=98.64 E-value=2.6e-07 Score=73.28 Aligned_cols=95 Identities=20% Similarity=0.353 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHH-----cCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCC--CCceecCc-
Q psy15189 22 FLSHYNIWNEVVD-----NNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEK--PDTWVSGS- 93 (150)
Q Consensus 22 ~lSH~~~w~~~~~-----~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~--~~~~~~~~- 93 (150)
...|+.+|+.+.. .+.++++|+|||..+.+ ...+..++..+.. .+||+++|...-.... ......+.
T Consensus 99 ia~HlsLWe~~~~~~~~~~~~~yivVvEddnT~~~--~~~l~~~I~aM~~---k~idilQLre~~~~~~~rt~~~~~~~p 173 (325)
T PF03213_consen 99 IANHLSLWESISNADIKDPEDKYIVVVEDDNTLRD--ITTLHPIIKAMKK---KNIDILQLRETYHNSNVRTLLPQEGNP 173 (325)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEeCCCcccc--cHHHHHHHHHHHH---cCceEEEEehhhhccccccccccccCc
Confidence 4679999999943 33589999999999987 4456677776654 2799999864322111 11111221
Q ss_pred -ceEEeeCCcceeEEeeecHHHHHHHHhh
Q psy15189 94 -RYLVEASYSYWTLGYLLSRQGARKLTQA 121 (150)
Q Consensus 94 -~~l~~~~~~~~t~aY~Is~~~A~klL~~ 121 (150)
-+.+..++..+..||+|+..+|++|.+.
T Consensus 174 ~~~~Y~GGyD~SLsAYIIr~~~a~kl~~~ 202 (325)
T PF03213_consen 174 SMYSYTGGYDVSLSAYIIRVSTAKKLYNE 202 (325)
T ss_pred ceeeecCccceeeEEEEEEhHHHHHHHHH
Confidence 2345566788999999999999999986
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=96.41 E-value=0.0048 Score=48.18 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCc--ee-cCc
Q psy15189 17 GEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDT--WV-SGS 93 (150)
Q Consensus 17 geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~--~~-~~~ 93 (150)
....|.+.+. +.....++.+|.++++||..+.. +.|..++...++ + +-+++|.......... .. ...
T Consensus 69 ~~~~~~~~~~--y~~~~~~~~~Wf~~~DDDtyv~~---~~L~~~L~~~~~----~-~~~yiG~~~~~~~~~~~~~~~~~~ 138 (252)
T PF02434_consen 69 KTLSCKMAYE--YDHFLNSDKDWFCFADDDTYVNV---ENLRRLLSKYDP----S-EPIYIGRPSGDRPIEIIHRFNPNK 138 (252)
T ss_dssp ----HHHHHH--HHHHHHHT-SEEEEEETTEEE-H---HHHHHHHTTS-T----T-S--EEE-EE---------------
T ss_pred HHHHHHHHHH--HHhhhcCCceEEEEEeCCceecH---HHHHHHHhhCCC----c-cCEEeeeeccCccceeeccccccc
Confidence 3455555443 34556677799999999999853 234445444432 2 2367776432211000 00 000
Q ss_pred ceEEeeCCcceeEEeeecHHHHHHHHhhC---CC-C----CCchhhhhhHHHHcc
Q psy15189 94 RYLVEASYSYWTLGYLLSRQGARKLTQAR---PL-S----NLLPVDEFLPLLSGK 140 (150)
Q Consensus 94 ~~l~~~~~~~~t~aY~Is~~~A~klL~~~---~~-~----~~~pvD~~l~~~f~~ 140 (150)
..-....+..|-+||+|||.+++++.... .. . ...|=|.-+..+++.
T Consensus 139 ~~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~ 193 (252)
T PF02434_consen 139 SKDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN 193 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH
T ss_pred cCcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh
Confidence 00011235677889999999999994321 10 0 013667666655443
No 8
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=96.15 E-value=0.06 Score=43.85 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=60.9
Q ss_pred HHHHHHHc-CCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCceecC-cceEEeeCCccee
Q psy15189 28 IWNEVVDN-NHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDTWVSG-SRYLVEASYSYWT 105 (150)
Q Consensus 28 ~w~~~~~~-~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~~~~~-~~~l~~~~~~~~t 105 (150)
+...+.+. +.+.++|||||.++.++|.+.+++.+..+.. |-.+..++......... .+.. ...++.. .....
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~----D~~v~~ISa~NdnG~~~-~~~~~~~~lyrs-~ff~g 161 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEE----DPSLWCISAWNDNGKEH-FVDDTPSLLYRT-DFFPG 161 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhc----CCCEEEEEeeccCCccc-ccCCCcceEEEe-cCCCc
Confidence 56666654 5699999999999999999988888887764 33444444322111110 1111 2233432 23456
Q ss_pred EEeeecHHHHHHHHhhCCCCCCchhhhhhH
Q psy15189 106 LGYLLSRQGARKLTQARPLSNLLPVDEFLP 135 (150)
Q Consensus 106 ~aY~Is~~~A~klL~~~~~~~~~pvD~~l~ 135 (150)
.|.+++|+.=+.+ +- ... ....|.||.
T Consensus 162 lGWml~r~~W~e~-~~-~wp-~~~WD~w~R 188 (334)
T cd02514 162 LGWMLTRKLWKEL-EP-KWP-KAFWDDWMR 188 (334)
T ss_pred hHHHHHHHHHHHh-CC-CCC-CCChHHhhc
Confidence 7889999998888 32 211 147788874
No 9
>PLN03153 hypothetical protein; Provisional
Probab=94.96 E-value=0.2 Score=43.04 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=45.5
Q ss_pred cCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCceecCcceEEeeCCcceeEEeeecHHH
Q psy15189 35 NNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDTWVSGSRYLVEASYSYWTLGYLLSRQG 114 (150)
Q Consensus 35 ~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~~~~~~~~l~~~~~~~~t~aY~Is~~~ 114 (150)
.+.+|.+++|||..|.. +.|.+.++..+. -+-+|+|........ +. .....+++|-+||+||+..
T Consensus 209 pd~kWfVf~DDDTyf~~---~NLv~~Ls~YDp-----tkp~YIGs~Se~~~q-----n~--~f~~~fA~GGAG~~LSrPL 273 (537)
T PLN03153 209 PDVRWFVLGDDDTIFNA---DNLVAVLSKYDP-----SEMVYVGGPSESHSA-----NS--YFSHNMAFGGGGIAISYPL 273 (537)
T ss_pred CCCCEEEEecCCccccH---HHHHHHHhhcCC-----CCCEEeccccccccc-----cc--ccccccccCCceEEEcHHH
Confidence 56799999999999952 344455554432 234777754322111 00 0112367889999999999
Q ss_pred HHHHHhh
Q psy15189 115 ARKLTQA 121 (150)
Q Consensus 115 A~klL~~ 121 (150)
|++|.+.
T Consensus 274 ae~L~~~ 280 (537)
T PLN03153 274 AEALSRI 280 (537)
T ss_pred HHHHHHH
Confidence 9988765
No 10
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=94.94 E-value=0.25 Score=41.62 Aligned_cols=104 Identities=21% Similarity=0.290 Sum_probs=55.2
Q ss_pred HHHH-HHHHHHHH-cCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCceecC--cceEEe
Q psy15189 23 LSHY-NIWNEVVD-NNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDTWVSG--SRYLVE 98 (150)
Q Consensus 23 lSH~-~~w~~~~~-~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~~~~~--~~~l~~ 98 (150)
..|+ -+..++.. .+.+.++|+|||..+.++|.+-+++...-+.+ |-.+.-++.-.-... ...+.. ...+++
T Consensus 176 A~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~----D~sl~ciSawNdnG~-~~~~~~~~~~~lyR 250 (434)
T PF03071_consen 176 ARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLEN----DPSLWCISAWNDNGK-EHFVDDSRPSLLYR 250 (434)
T ss_dssp HHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-----TTEEEEES--TT-B-GGGS-TT-TT-EEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhc----CCCeEEEEccccCCc-cccccCCCccceEe
Confidence 3555 34445554 46789999999999999999888877776655 333433332111111 111111 234565
Q ss_pred eCCcceeEEeeecHHHHHHHHhhCCCCCCchhhhhhH
Q psy15189 99 ASYSYWTLGYLLSRQGARKLTQARPLSNLLPVDEFLP 135 (150)
Q Consensus 99 ~~~~~~t~aY~Is~~~A~klL~~~~~~~~~pvD~~l~ 135 (150)
..+. ..-|.+++|+-=+.+-..=|. ...|+||.
T Consensus 251 sdff-pglGWml~r~~w~el~~~Wp~---~~WDdwmR 283 (434)
T PF03071_consen 251 SDFF-PGLGWMLTRELWDELEPKWPK---AFWDDWMR 283 (434)
T ss_dssp ESS----SSEEEEHHHHHHHGGG--S---S-HHHHHT
T ss_pred cccC-CchHHHhhHHHHHhhcccCCC---CCchhhhc
Confidence 5443 344699999887765433342 24899874
No 11
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=94.72 E-value=0.095 Score=42.02 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEecc
Q psy15189 25 HYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGR 79 (150)
Q Consensus 25 H~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~ 79 (150)
+.-++..|...+ +|.|.|||||+..++|...+..++...+. ++|-++.++.
T Consensus 159 ya~Lm~y~~~~~-~YyL~LEDDVia~~~f~~~i~~~v~~~~~---~~W~~LeFs~ 209 (297)
T PF04666_consen 159 YAFLMNYCQNLG-DYYLQLEDDVIAAPGFLSRIKRFVEAWES---KDWLYLEFSQ 209 (297)
T ss_pred HHHHHHHHHhcC-CeEEEecCCeEechhHHHHHHHHHHHhcC---CCceEEEeec
Confidence 445666666555 89999999999999998888887777654 3898777654
No 12
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=90.88 E-value=1.4 Score=32.58 Aligned_cols=105 Identities=25% Similarity=0.333 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHc--CCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccC-CCCC---Cce-ecCc
Q psy15189 21 CFLSHYNIWNEVVDN--NHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKL-SEKP---DTW-VSGS 93 (150)
Q Consensus 21 C~lSH~~~w~~~~~~--~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~-~~~~---~~~-~~~~ 93 (150)
-.+..+.+++-+.+. +.++.+-.+||+.+... .|...+....... .-..++-+.... ++.. .++ ++.
T Consensus 63 lt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~---~l~~~L~~~~~~~--~~~~~~g~~~~~~~~~r~~~~kw~v~~- 136 (195)
T PF01762_consen 63 LTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPD---RLVSFLKSLKQDP--SKNSIYGGCIKNGPPIRDPSSKWYVSE- 136 (195)
T ss_pred hhHHHHHHHHHHHhhCCchhheeecCcEEEEehH---HhhhhhhhcccCc--cccccccccccCCccccccccCceeee-
Confidence 356677777777755 35899999999998753 1222333321101 122232221111 1100 111 110
Q ss_pred ceEEee-CC-cc-eeEEeeecHHHHHHHHhhCCCCCCchhhh
Q psy15189 94 RYLVEA-SY-SY-WTLGYLLSRQGARKLTQARPLSNLLPVDE 132 (150)
Q Consensus 94 ~~l~~~-~~-~~-~t~aY~Is~~~A~klL~~~~~~~~~pvD~ 132 (150)
..+.. .+ .+ ...+|++|+..++.|++........|+|+
T Consensus 137 -~~y~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~~~~eD 177 (195)
T PF01762_consen 137 -EEYPDDYYPPYCSGGGYVLSSDVVKRIYKASSHTPFFPLED 177 (195)
T ss_pred -eecccccCCCcCCCCeEEecHHHHHHHHHHhhcCCCCCchH
Confidence 11111 12 12 34699999999999998843223355554
No 13
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=90.05 E-value=3.6 Score=33.89 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=56.9
Q ss_pred HHHHHHHHcC--CCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCceecCcceEEeeCC--c
Q psy15189 27 NIWNEVVDNN--HDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDTWVSGSRYLVEASY--S 102 (150)
Q Consensus 27 ~~w~~~~~~~--~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~~~~~~~~l~~~~~--~ 102 (150)
.+|+++.+.. ..++|-||+|-.+.+||...+....+...+. .++-+++.||...... ....... .+-...+ +
T Consensus 155 ~Vf~~l~~~~~~~g~v~fLEEDhyv~pD~l~~l~~~~~~~~~~-cp~c~~~sLG~y~~~~-~~~~~~~--~v~~~~W~Ss 230 (356)
T PF05060_consen 155 FVFDGLEETRNHNGWVLFLEEDHYVAPDFLHVLRLMIKLKKSE-CPDCDILSLGTYDKSN-GYQSDPN--KVEVTPWISS 230 (356)
T ss_pred HHHHhhhhhccCCceEEEEecccccchhHHHHHHHHHHHhhhc-CCCCCEEeccCCcccc-ccccccc--eeeeeccccc
Confidence 4677764332 3689999999999999998887766554432 2378999999754211 1000000 0111111 1
Q ss_pred ceeEEeeecHHHHHHHHhh
Q psy15189 103 YWTLGYLLSRQGARKLTQA 121 (150)
Q Consensus 103 ~~t~aY~Is~~~A~klL~~ 121 (150)
....||+++|..=++|..-
T Consensus 231 kHNmGmAfNRs~W~kI~~c 249 (356)
T PF05060_consen 231 KHNMGMAFNRSTWNKIKSC 249 (356)
T ss_pred cccceeEecHHHHHHHHHH
Confidence 2357999999999999865
No 14
>KOG2287|consensus
Probab=88.71 E-value=1.8 Score=35.37 Aligned_cols=108 Identities=23% Similarity=0.307 Sum_probs=54.2
Q ss_pred HHHHHHHHHHH--HcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccC--CCCC---Cce-ecCcc
Q psy15189 23 LSHYNIWNEVV--DNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKL--SEKP---DTW-VSGSR 94 (150)
Q Consensus 23 lSH~~~w~~~~--~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~--~~~~---~~~-~~~~~ 94 (150)
+.++.+.+-.. ....++++=.+||+.+..+ .|-+.+.+.. . .-.-.+.|.-.. .+.+ .++ ++..
T Consensus 172 lKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~---~L~~~L~~~~---~-~~~~~~~G~v~~~~~p~R~~~~KwyVp~~- 243 (349)
T KOG2287|consen 172 LKTLAILLWGVSKCPDAKFILKIDDDVFVNPD---NLLEYLDKLN---D-PSSDLYYGRVIQNAPPIRDKTSKWYVPES- 243 (349)
T ss_pred HHHHHHHHHHHhcCCcceEEEeccCceEEcHH---HHHHHHhccC---C-CCcceEEEeecccCCCCCCCCCCCccCHH-
Confidence 34444444444 3456788888999999754 1222222221 1 122244443211 1111 111 2211
Q ss_pred eEEee-CCc--ceeEEeeecHHHHHHHHhhCCCCCCchhhh-hhHHHHc
Q psy15189 95 YLVEA-SYS--YWTLGYLLSRQGARKLTQARPLSNLLPVDE-FLPLLSG 139 (150)
Q Consensus 95 ~l~~~-~~~--~~t~aY~Is~~~A~klL~~~~~~~~~pvD~-~l~~~f~ 139 (150)
.+.. .++ .+..||+||+++|+++++........++|+ +++...+
T Consensus 244 -~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~ 291 (349)
T KOG2287|consen 244 -EYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLA 291 (349)
T ss_pred -HCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 1111 222 345799999999999999854333466654 4554443
No 15
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=82.36 E-value=4.4 Score=31.34 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHH
Q psy15189 17 GEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATIL 61 (150)
Q Consensus 17 geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l 61 (150)
...|-+-.--...+.+.+.+.++.++|.||..+.+++.+.+.+.+
T Consensus 54 ~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 54 DNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred CCcchHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 456777777777888888788999999999999987655544443
No 16
>KOG2246|consensus
Probab=80.20 E-value=7.1 Score=32.29 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHH---cCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCceecCcceEE
Q psy15189 21 CFLSHYNIWNEVVD---NNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDTWVSGSRYLV 97 (150)
Q Consensus 21 C~lSH~~~w~~~~~---~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~~~~~~~~l~ 97 (150)
-+.-=+.+|+.+.+ ++.+|.+--+||..+-. +.|..++...+. =+.+|+|.......
T Consensus 150 ~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~---eNLr~~L~~yDp-----~~p~YiG~~~~~~~------------ 209 (364)
T KOG2246|consen 150 LWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIM---ENLRYVLSKYDP-----EKPVYLGYRSKSYF------------ 209 (364)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeH---HHHHHHHhhcCC-----CCcEEecccccccc------------
Confidence 33333445555552 46789999999998752 234555555432 34588886432111
Q ss_pred eeCCcceeEEeeecHHHHHHHHhh
Q psy15189 98 EASYSYWTLGYLLSRQGARKLTQA 121 (150)
Q Consensus 98 ~~~~~~~t~aY~Is~~~A~klL~~ 121 (150)
...+..|.++|++++++-+.|.+.
T Consensus 210 ~~~y~~g~ag~~ls~aa~~~la~~ 233 (364)
T KOG2246|consen 210 QNGYSSGGAGYVLSFAALRRLAER 233 (364)
T ss_pred ccccccCCCCcceeHHHHHHHHHH
Confidence 112566788999999998887765
No 17
>KOG2791|consensus
Probab=78.82 E-value=10 Score=31.38 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=56.8
Q ss_pred HHHHHHHc--CCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCceecCcceEEee-CCcce
Q psy15189 28 IWNEVVDN--NHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDTWVSGSRYLVEA-SYSYW 104 (150)
Q Consensus 28 ~w~~~~~~--~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 104 (150)
+|..+-+. ....+|.||.|-.+.+++...++.+.+--++ .-|+.+++-||......+-. ....++.. ....+
T Consensus 242 Vwd~ve~~~~~~g~iLflEEDH~LaPdayhv~~~l~~lkp~-~Cp~C~~~sLg~y~s~sryG----qD~~~v~~w~s~~h 316 (455)
T KOG2791|consen 242 VWDGVEETKGHEGHILFLEEDHFLAPDAYHVIQTLTRLKPA-KCPDCFAASLGPYDSKSRYG----QDEGLVSLWASRMH 316 (455)
T ss_pred HHHHHHHhccCCceEEEEecccccChhHHHHHHHHHhcCcc-cCCcceeeeccccccccccc----ccccceeehhhhcc
Confidence 56633332 2468999999999999999888776554333 23489999998653221100 00111111 11234
Q ss_pred eEEeeecHHHHHHHHhhC
Q psy15189 105 TLGYLLSRQGARKLTQAR 122 (150)
Q Consensus 105 t~aY~Is~~~A~klL~~~ 122 (150)
-.||.++|++-+|+.+-.
T Consensus 317 NmG~al~rn~wqki~~c~ 334 (455)
T KOG2791|consen 317 NMGYALNRNVWQKIHQCA 334 (455)
T ss_pred cchhhhhHHHHHHHHHhH
Confidence 679999999999998753
No 18
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.96 E-value=7.3 Score=28.12 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHH
Q psy15189 26 YNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATIL 61 (150)
Q Consensus 26 ~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l 61 (150)
-.+++.+.+.+.++.+++.||..+++++.+.+.+.+
T Consensus 69 n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~ 104 (202)
T cd04185 69 YEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYA 104 (202)
T ss_pred HHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHH
Confidence 445565655567999999999999998765554443
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.92 E-value=11 Score=25.70 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHH
Q psy15189 19 IGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLA 58 (150)
Q Consensus 19 iGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~ 58 (150)
.|-..+...+.+.+ +.+++++++||..+.+++.+.+.
T Consensus 60 ~g~~~a~n~~~~~~---~~~~i~~~D~D~~~~~~~l~~~~ 96 (166)
T cd04186 60 LGFGAGNNQGIREA---KGDYVLLLNPDTVVEPGALLELL 96 (166)
T ss_pred cChHHHhhHHHhhC---CCCEEEEECCCcEECccHHHHHH
Confidence 34444444555544 55899999999999988654443
No 20
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=64.08 E-value=15 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=18.5
Q ss_pred CCeEEEEccCCcCchhHHHHHHHHHH
Q psy15189 37 HDIVMVLEDDVRFESFFRQKLATILK 62 (150)
Q Consensus 37 ~~~~lIlEDD~~l~~~f~~~l~~~l~ 62 (150)
.+++++++||..+.+++.+.+-+.++
T Consensus 79 ~~~i~~ld~D~~~~~~~l~~l~~~~~ 104 (169)
T PF00535_consen 79 GEYILFLDDDDIISPDWLEELVEALE 104 (169)
T ss_dssp SSEEEEEETTEEE-TTHHHHHHHHHH
T ss_pred eeEEEEeCCCceEcHHHHHHHHHHHH
Confidence 36999999999999986554444433
No 21
>KOG1413|consensus
Probab=62.75 E-value=26 Score=29.12 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=26.7
Q ss_pred HHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhh
Q psy15189 32 VVDNNHDIVMVLEDDVRFESFFRQKLATILKELKT 66 (150)
Q Consensus 32 ~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~ 66 (150)
+...+....+|.|||..+.++|.+-+.....-+..
T Consensus 163 F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~ 197 (411)
T KOG1413|consen 163 FIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKG 197 (411)
T ss_pred HhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhc
Confidence 44566789999999999999998777665544543
No 22
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=62.51 E-value=38 Score=27.24 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCcc
Q psy15189 4 GYADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWD 73 (150)
Q Consensus 4 ~~~~~~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~d 73 (150)
.+..+|.+.+=-.=.+|=+.+=+..|-.+...|.++.|=+|| ......-.+....+++.+.+.+. +||
T Consensus 5 ~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiED-tD~~R~~~~~~~~I~~dL~wlGl-~wD 72 (299)
T PRK05710 5 PYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIED-IDPPREVPGAADAILADLEWLGL-HWD 72 (299)
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECc-CCCCccchHHHHHHHHHHHHCCC-CCC
Confidence 344556666666667899999999999999998899999996 45554555667788888888898 898
No 23
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=61.33 E-value=48 Score=25.76 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=46.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccE
Q psy15189 9 YHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDL 74 (150)
Q Consensus 9 ~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~di 74 (150)
|.+.+=-.=.+|=+.+=+..|..+...+..+.|-+|| ......-.+....+++.+.+.+. +||-
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD-td~~r~~~~~~~~i~~dL~wlGl-~~d~ 69 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIED-TDQERSVPEAEEAILEALKWLGL-DWDE 69 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc-CCCCCCchHHHHHHHHHHHHcCC-CCCc
Confidence 4444444556888888888999999888788888998 44444455566777788888888 8885
No 24
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=57.93 E-value=46 Score=23.66 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEec
Q psy15189 17 GEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLG 78 (150)
Q Consensus 17 geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~ 78 (150)
+..|.....-.+++.+ ..++++++++|..+.+++.+.+.+. +...+ +.++++..
T Consensus 67 ~~~g~~~a~n~g~~~a---~~d~i~~ld~D~~~~~~~l~~~~~~---~~~~~--~~~~v~~~ 120 (202)
T cd04184 67 ENGGISAATNSALELA---TGEFVALLDHDDELAPHALYEVVKA---LNEHP--DADLIYSD 120 (202)
T ss_pred cCCCHHHHHHHHHHhh---cCCEEEEECCCCcCChHHHHHHHHH---HHhCC--CCCEEEcc
Confidence 4456555555555542 3489999999999998865444433 32222 56677543
No 25
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=57.04 E-value=18 Score=24.41 Aligned_cols=38 Identities=24% Similarity=0.144 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHH
Q psy15189 17 GEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKL 57 (150)
Q Consensus 17 geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l 57 (150)
...|-..+.-.+++.+ +.++.++++||..+.+++.+.+
T Consensus 62 ~~~g~~~~~n~~~~~~---~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 62 ENGGKAGALNAGLRHA---KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred ccCCchHHHHHHHHhc---CCCEEEEECCCCCcChHHHHHH
Confidence 3455555555566654 4589999999999998865444
No 26
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=56.25 E-value=24 Score=25.96 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHH
Q psy15189 18 EIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKL 57 (150)
Q Consensus 18 eiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l 57 (150)
..|....--..++.+...+.++.+++.||..+++++.+.+
T Consensus 57 n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 57 NLGIAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred ceehHHhhhHHHHHHHhCCCCEEEEECCCCCcCHhHHHHH
Confidence 4665555556677666657799999999999998876554
No 27
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=52.38 E-value=63 Score=22.55 Aligned_cols=19 Identities=21% Similarity=0.079 Sum_probs=15.7
Q ss_pred CCCeEEEEccCCcCchhHH
Q psy15189 36 NHDIVMVLEDDVRFESFFR 54 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~ 54 (150)
..+++++++||..+.++..
T Consensus 75 ~~~~v~~ld~D~~~~~~~~ 93 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGAL 93 (202)
T ss_pred CCCEEEEeCCCcccCchHH
Confidence 3489999999999988754
No 28
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=52.27 E-value=49 Score=23.60 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHH
Q psy15189 17 GEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLA 58 (150)
Q Consensus 17 geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~ 58 (150)
+..|+..+.... +...+.+++++++||..+.++....+.
T Consensus 63 ~~~G~~~~~n~g---~~~~~g~~v~~ld~Dd~~~~~~l~~~~ 101 (214)
T cd04196 63 KNLGVARNFESL---LQAADGDYVFFCDQDDIWLPDKLERLL 101 (214)
T ss_pred CCccHHHHHHHH---HHhCCCCEEEEECCCcccChhHHHHHH
Confidence 455665555444 333456999999999999887544333
No 29
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=49.71 E-value=69 Score=25.15 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCeEEEEccCCcCchh---HHHHHHHHHHHhhhCCCCCccEEEecccc
Q psy15189 27 NIWNEVVDNNHDIVMVLEDDVRFESF---FRQKLATILKELKTKTLPAWDLIYLGRKK 81 (150)
Q Consensus 27 ~~w~~~~~~~~~~~lIlEDD~~l~~~---f~~~l~~~l~~~~~~~~~~~dii~L~~~~ 81 (150)
.+.++++.-|.+-++.++||..-..+ -...|.+.++++ ++|+|+.|...
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~------~~DLVl~G~~s 122 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKA------GFDLILCGDGS 122 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHh------CCCEEEEcCcc
Confidence 56899999999999999999654333 223455555542 68999988643
No 30
>PRK12342 hypothetical protein; Provisional
Probab=48.80 E-value=73 Score=24.97 Aligned_cols=47 Identities=15% Similarity=0.360 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCeEEEEccCCcCchhH---HHHHHHHHHHhhhCCCCCccEEEeccc
Q psy15189 28 IWNEVVDNNHDIVMVLEDDVRFESFF---RQKLATILKELKTKTLPAWDLIYLGRK 80 (150)
Q Consensus 28 ~w~~~~~~~~~~~lIlEDD~~l~~~f---~~~l~~~l~~~~~~~~~~~dii~L~~~ 80 (150)
+.++++.-|.+-++.++||..-..+. ...|.+.++++ ++|+|+.|..
T Consensus 69 l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~------~~DLVl~G~~ 118 (254)
T PRK12342 69 VRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKI------GFDLLLFGEG 118 (254)
T ss_pred HHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHh------CCCEEEEcCC
Confidence 45778999999999999996544443 34555555543 5899998864
No 31
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=47.76 E-value=37 Score=26.75 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=34.7
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHH
Q psy15189 16 KGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKE 63 (150)
Q Consensus 16 ~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~ 63 (150)
.+.+|=+-.+-...+.+.+++.+++++|-+|+.+.+++.+.+-+.++.
T Consensus 64 ~~NlG~agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~ 111 (305)
T COG1216 64 GENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEE 111 (305)
T ss_pred CCCccchhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHh
Confidence 345555556667778888887669999999999998876555554443
No 32
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=45.26 E-value=12 Score=29.03 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=15.9
Q ss_pred eEEeeecHHHHHHHHhh
Q psy15189 105 TLGYLLSRQGARKLTQA 121 (150)
Q Consensus 105 t~aY~Is~~~A~klL~~ 121 (150)
|.||+|.|++|+.+|+.
T Consensus 191 T~GY~vDpkaAkaVL~v 207 (258)
T COG2047 191 TPGYLVDPKAAKAVLEV 207 (258)
T ss_pred CCccccChHHHHHHHHH
Confidence 78999999999999986
No 33
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=45.14 E-value=63 Score=22.49 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=17.7
Q ss_pred CCCeEEEEccCCcCchhHHHHH
Q psy15189 36 NHDIVMVLEDDVRFESFFRQKL 57 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~~~l 57 (150)
..++.++|++|..+.+++.+.+
T Consensus 79 ~g~~i~~lD~D~~~~~~~l~~~ 100 (182)
T cd06420 79 KGDYLIFIDGDCIPHPDFIADH 100 (182)
T ss_pred cCCEEEEEcCCcccCHHHHHHH
Confidence 4489999999999998865443
No 34
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=44.37 E-value=54 Score=22.87 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHH
Q psy15189 17 GEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQ 55 (150)
Q Consensus 17 geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~ 55 (150)
...|........++.+. + ++.+++++|..+.++..+
T Consensus 63 ~n~G~~~a~n~g~~~a~--g-d~i~~lD~D~~~~~~~l~ 98 (185)
T cd04179 63 RNFGKGAAVRAGFKAAR--G-DIVVTMDADLQHPPEDIP 98 (185)
T ss_pred CCCCccHHHHHHHHHhc--C-CEEEEEeCCCCCCHHHHH
Confidence 34565555555555533 3 899999999999887543
No 35
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=44.36 E-value=30 Score=25.28 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=17.2
Q ss_pred CCeEEEEccCCcCchhHHHHHHHHH
Q psy15189 37 HDIVMVLEDDVRFESFFRQKLATIL 61 (150)
Q Consensus 37 ~~~~lIlEDD~~l~~~f~~~l~~~l 61 (150)
.+++++++||..+++++.+.+.+.+
T Consensus 87 ~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 87 GDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp -SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred CCEEEEECCCcEECHHHHHHHHHHH
Confidence 5899999999999998765544443
No 36
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.50 E-value=38 Score=24.50 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.0
Q ss_pred CCCeEEEEccCCcCchhHHHHHHH
Q psy15189 36 NHDIVMVLEDDVRFESFFRQKLAT 59 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~~~l~~ 59 (150)
+.++++++++|..+.+++.+.+.+
T Consensus 82 ~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 82 KGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred cCCEEEEECCCcccCHHHHHHHHH
Confidence 458999999999999887554443
No 37
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=42.74 E-value=48 Score=21.54 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=17.7
Q ss_pred CCCeEEEEccCCcCchhHHHHH
Q psy15189 36 NHDIVMVLEDDVRFESFFRQKL 57 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~~~l 57 (150)
+.+++++++||..+.+++...+
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 4589999999999998865443
No 38
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=41.01 E-value=1.7e+02 Score=26.29 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=22.2
Q ss_pred eeEEeeecHHHHHHHHhhC---CCCCCchh-hhhhHHHH
Q psy15189 104 WTLGYLLSRQGARKLTQAR---PLSNLLPV-DEFLPLLS 138 (150)
Q Consensus 104 ~t~aY~Is~~~A~klL~~~---~~~~~~pv-D~~l~~~f 138 (150)
+-.||++|+..|++|.+.. ... ..++ |.|+.++.
T Consensus 542 sG~gYVlS~Dla~~L~~~s~s~~l~-~f~lEDVyvGi~l 579 (636)
T PLN03133 542 HGPGYVVSRDIAKEVYKRHKEGRLK-MFKLEDVAMGIWI 579 (636)
T ss_pred CcCEEEEcHHHHHHHHHhhhhcccC-cCChhhHhHHHHH
Confidence 3469999999999998752 122 2344 55666543
No 39
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=39.94 E-value=56 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.5
Q ss_pred CCCeEEEEccCCcCchhHHHHHH
Q psy15189 36 NHDIVMVLEDDVRFESFFRQKLA 58 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~~~l~ 58 (150)
+.++++++.||..+.+++.+.+.
T Consensus 77 ~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 77 TTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred CCCEEEEECCCceeChhHHHHHH
Confidence 45899999999999998744433
No 40
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=39.81 E-value=76 Score=22.51 Aligned_cols=39 Identities=13% Similarity=-0.151 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHH
Q psy15189 18 EIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLAT 59 (150)
Q Consensus 18 eiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~ 59 (150)
..|..-.--.+.+. .+.++++++++|..+.+++.+.+-+
T Consensus 65 n~G~~~a~N~g~~~---a~gd~i~~lD~Dd~~~~~~l~~~~~ 103 (201)
T cd04195 65 NRGLGKALNEGLKH---CTYDWVARMDTDDISLPDRFEKQLD 103 (201)
T ss_pred cccHHHHHHHHHHh---cCCCEEEEeCCccccCcHHHHHHHH
Confidence 35555544444443 2458999999999999886544433
No 41
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.32 E-value=18 Score=24.25 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=10.3
Q ss_pred CCeEEEEccCCc
Q psy15189 37 HDIVMVLEDDVR 48 (150)
Q Consensus 37 ~~~~lIlEDD~~ 48 (150)
..+++|||||-.
T Consensus 10 ~~~~vVFEDdGe 21 (97)
T PF10008_consen 10 GPYAVVFEDDGE 21 (97)
T ss_pred CCEEEEEEeCCC
Confidence 379999999975
No 42
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=38.04 E-value=49 Score=24.07 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=19.4
Q ss_pred CCCeEEEEccCCcCchhHHHHHHHH
Q psy15189 36 NHDIVMVLEDDVRFESFFRQKLATI 60 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~~~l~~~ 60 (150)
+.++++++.||..+++++.+.+.+.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~ 108 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTLGY 108 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHHHH
Confidence 4599999999999998865544443
No 43
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.78 E-value=74 Score=25.06 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHH
Q psy15189 27 NIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILK 62 (150)
Q Consensus 27 ~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~ 62 (150)
.+.+++--.|.+.+++++|--+.++.|.+.++.+++
T Consensus 79 ~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~ 114 (268)
T PF12780_consen 79 KALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLS 114 (268)
T ss_dssp HHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHh
Confidence 344555556668999999998888889888888765
No 44
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=34.01 E-value=1.5e+02 Score=23.45 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCeEEEEccCCcCchhHH---HHHHHHHHHhhhCCCCCccEEEecccc
Q psy15189 27 NIWNEVVDNNHDIVMVLEDDVRFESFFR---QKLATILKELKTKTLPAWDLIYLGRKK 81 (150)
Q Consensus 27 ~~w~~~~~~~~~~~lIlEDD~~l~~~f~---~~l~~~l~~~~~~~~~~~dii~L~~~~ 81 (150)
.+.++++.-|.+.++.++|+..-..+-. ..|.+.++.. +.++|++|...
T Consensus 70 ~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~------~~~LVl~G~qa 121 (260)
T COG2086 70 EALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKI------GPDLVLTGKQA 121 (260)
T ss_pred HHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhc------CCCEEEEeccc
Confidence 4567788999999999999885444322 2333443332 57799988643
No 45
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=33.60 E-value=23 Score=23.40 Aligned_cols=10 Identities=50% Similarity=0.850 Sum_probs=7.1
Q ss_pred CCCeEEEEcc
Q psy15189 36 NHDIVMVLED 45 (150)
Q Consensus 36 ~~~~~lIlED 45 (150)
+.+|+|||||
T Consensus 84 g~DWVLVl~d 93 (93)
T PF12904_consen 84 GNDWVLVLDD 93 (93)
T ss_dssp S--EEEEEEE
T ss_pred CCCEEEEEeC
Confidence 4689999998
No 46
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=33.56 E-value=2.6e+02 Score=23.42 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=55.7
Q ss_pred CchhHHHHHHHHHHHHHHHHc--CCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCceecC
Q psy15189 15 KKGEIGCFLSHYNIWNEVVDN--NHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDTWVSG 92 (150)
Q Consensus 15 t~geiGC~lSH~~~w~~~~~~--~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~~~~~ 92 (150)
...|+|-++..+..++-+... +.++++=-+||+.+... ++++.+...+ .-+ ++.|....... ....
T Consensus 176 ~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp------~lL~~Lr~~p--rr~-LY~G~v~~~~~---p~Rd 243 (382)
T PTZ00210 176 IEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVP------KYLADLRVMP--RHG-LYMGRYNYYNR---IWRR 243 (382)
T ss_pred chhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHH------HHHHHHhhCC--CCc-eEEEeeCCCCc---cccC
Confidence 466888888888888887765 45788888999998732 2222222222 112 55664322110 0100
Q ss_pred cceEEeeCCcce-eEEeeecHHHHHHHHhhCCC
Q psy15189 93 SRYLVEASYSYW-TLGYLLSRQGARKLTQARPL 124 (150)
Q Consensus 93 ~~~l~~~~~~~~-t~aY~Is~~~A~klL~~~~~ 124 (150)
..-.+| -.||++|+.-|+.+++..|.
T Consensus 244 ------~~PpY~~G~gYvLSrDVA~~Lvs~~pl 270 (382)
T PTZ00210 244 ------NQLTYVNGYCITLSRDTAQAIISYKPL 270 (382)
T ss_pred ------CCCCccccceeeccHHHHHHHHhhChH
Confidence 011223 45999999999999988554
No 47
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=32.89 E-value=1e+02 Score=22.34 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=21.1
Q ss_pred cCCCeEEEEccCCcCchhHHHHHHHHHHHhh
Q psy15189 35 NNHDIVMVLEDDVRFESFFRQKLATILKELK 65 (150)
Q Consensus 35 ~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~ 65 (150)
...++.+|+++|+.+.+++. .+++..+.
T Consensus 30 a~~d~~~~~DsDi~v~p~~L---~~lv~~l~ 57 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYL---RELVAPLA 57 (175)
T ss_pred CCCCEEEEECCCeeECHHHH---HHHHHHHh
Confidence 56689999999999999864 44444443
No 48
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=32.23 E-value=76 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=18.4
Q ss_pred CCCeEEEEccCCcCchhHHHHHH
Q psy15189 36 NHDIVMVLEDDVRFESFFRQKLA 58 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~~~l~ 58 (150)
+.++.+++.||..+.+++.+.+.
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHH
Confidence 45899999999999988655444
No 49
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=31.52 E-value=1.6e+02 Score=20.65 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=20.0
Q ss_pred HcCCCeEEEEccCCcCchhHHHHHHH
Q psy15189 34 DNNHDIVMVLEDDVRFESFFRQKLAT 59 (150)
Q Consensus 34 ~~~~~~~lIlEDD~~l~~~f~~~l~~ 59 (150)
+.+.++.+++..|..+++++...+..
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~ 104 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNA 104 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHH
Confidence 34568999999999999987554443
No 50
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=30.34 E-value=91 Score=25.34 Aligned_cols=26 Identities=15% Similarity=0.416 Sum_probs=20.1
Q ss_pred HHcCCCeEEEEccCCcCchhHHHHHH
Q psy15189 33 VDNNHDIVMVLEDDVRFESFFRQKLA 58 (150)
Q Consensus 33 ~~~~~~~~lIlEDD~~l~~~f~~~l~ 58 (150)
.+...|+.+++++|+.+++++.+.+.
T Consensus 123 ~~a~ge~i~~~DaD~~~~p~~L~~lv 148 (373)
T TIGR03472 123 PHARHDILVIADSDISVGPDYLRQVV 148 (373)
T ss_pred HhccCCEEEEECCCCCcChhHHHHHH
Confidence 34456999999999999998755443
No 51
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=30.29 E-value=3.4e+02 Score=23.00 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=45.9
Q ss_pred CCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCC----CceecCcceEE---eeCC-c-ceeE
Q psy15189 36 NHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKP----DTWVSGSRYLV---EASY-S-YWTL 106 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~----~~~~~~~~~l~---~~~~-~-~~t~ 106 (150)
+.++.+=-.||+.+..+- |.+.+..... .- -+|.|.-...+-. ..+.+...... ...| . .+-.
T Consensus 236 dAkF~mK~DDDvfVnv~~---L~~~L~~~~~----~~-rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~ 307 (408)
T PLN03193 236 DADFYVKVDDDVHVNIAT---LGETLVRHRK----KP-RVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQ 307 (408)
T ss_pred CCeEEEEcCCCceEcHHH---HHHHHHhcCC----CC-CEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcc
Confidence 568999999999997531 2222222111 11 2777764322111 11111110000 0112 2 3346
Q ss_pred EeeecHHHHHHHHhhCC-CCCCchhhhhhHHHH
Q psy15189 107 GYLLSRQGARKLTQARP-LSNLLPVDEFLPLLS 138 (150)
Q Consensus 107 aY~Is~~~A~klL~~~~-~~~~~pvD~~l~~~f 138 (150)
||+||+.-|+.+....+ ...+-.=|.++...+
T Consensus 308 gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG~Wl 340 (408)
T PLN03193 308 LYAISKDLASYISINQHVLHKYANEDVSLGSWF 340 (408)
T ss_pred eEEehHHHHHHHHhChhhhcccCcchhhhhhHh
Confidence 99999999999986532 222223355555433
No 52
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=29.93 E-value=79 Score=23.44 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHH
Q psy15189 20 GCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATI 60 (150)
Q Consensus 20 GC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~ 60 (150)
|-..+-....+.+ ..++.+++++|..+.+++.+.+.+.
T Consensus 96 g~~~a~n~gi~~a---~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 96 GKAAALNRALALA---TGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred ChHHHHHHHHHHc---CCCEEEEEccccCcCHHHHHHHHHH
Confidence 4333444444432 2389999999999998765444333
No 53
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=29.80 E-value=67 Score=23.59 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=18.3
Q ss_pred CCCeEEEEccCCcCchhHHHHHH
Q psy15189 36 NHDIVMVLEDDVRFESFFRQKLA 58 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~~~l~ 58 (150)
+.++++++.+|..+++++...+.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~ 106 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLV 106 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHH
Confidence 35899999999999998754443
No 54
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=28.68 E-value=1.3e+02 Score=23.34 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHH
Q psy15189 17 GEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKL 57 (150)
Q Consensus 17 geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l 57 (150)
...|.....-.+.+.+ ++ ++.++|.+|+.+.++..+.+
T Consensus 67 ~n~G~~~a~N~g~~~A--~g-d~i~fLD~D~~~~~~wL~~l 104 (299)
T cd02510 67 KREGLIRARIAGARAA--TG-DVLVFLDSHCEVNVGWLEPL 104 (299)
T ss_pred CCCCHHHHHHHHHHHc--cC-CEEEEEeCCcccCccHHHHH
Confidence 4456665555555542 34 89999999999988864433
No 55
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=27.79 E-value=93 Score=22.39 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=17.8
Q ss_pred CCeEEEEccCCcCchhHHHHH
Q psy15189 37 HDIVMVLEDDVRFESFFRQKL 57 (150)
Q Consensus 37 ~~~~lIlEDD~~l~~~f~~~l 57 (150)
.++++++++|..+.+++.+.+
T Consensus 73 ~~~i~~~D~D~~~~~~~l~~l 93 (221)
T cd02522 73 GDWLLFLHADTRLPPDWDAAI 93 (221)
T ss_pred CCEEEEEcCCCCCChhHHHHH
Confidence 489999999999998876554
No 56
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=27.34 E-value=2.2e+02 Score=23.18 Aligned_cols=38 Identities=8% Similarity=-0.002 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHcC--CCeEEEEccCCcCchhHHHH
Q psy15189 19 IGCFLSHYNIWNEVVDNN--HDIVMVLEDDVRFESFFRQK 56 (150)
Q Consensus 19 iGC~lSH~~~w~~~~~~~--~~~~lIlEDD~~l~~~f~~~ 56 (150)
.|-...-...++.+.+.+ .++.+.+++|+.++++..+.
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~ 153 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLAR 153 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHH
Confidence 343333334555554332 58999999999999886433
No 57
>PHA00149 DNA encapsidation protein
Probab=27.14 E-value=41 Score=27.29 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHHHHHHcCC-CeEEEEccCCcCc-------hhHHHHHHHHHHHhhhCCCCCccEEEeccc
Q psy15189 16 KGEIGCFLSHYNIWNEVVDNNH-DIVMVLEDDVRFE-------SFFRQKLATILKELKTKTLPAWDLIYLGRK 80 (150)
Q Consensus 16 ~geiGC~lSH~~~w~~~~~~~~-~~~lIlEDD~~l~-------~~f~~~l~~~l~~~~~~~~~~~dii~L~~~ 80 (150)
.|+..|+++|+..|++...++. +.--|+=|.++.+ ++=...+..++..+..... +..++-|+..
T Consensus 88 ~~k~igy~i~LS~~q~~Ks~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re-~vr~~~lsNa 159 (331)
T PHA00149 88 KGKLIGYAIPLSTWQALKSSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARE-RVRCICLSNA 159 (331)
T ss_pred cCeEEEEEEehhhHHhhcccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhc-CeEEEEEcCc
Confidence 4899999999999999998876 5777777888763 2222234445555444333 6667777653
No 58
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=27.12 E-value=82 Score=22.42 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=16.8
Q ss_pred eEEEEccCCcCchhHHHHHHHH
Q psy15189 39 IVMVLEDDVRFESFFRQKLATI 60 (150)
Q Consensus 39 ~~lIlEDD~~l~~~f~~~l~~~ 60 (150)
+++++.+|..+++++.+.+.+.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~ 22 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAA 22 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHH
Confidence 5789999999999865544443
No 59
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=27.06 E-value=20 Score=26.35 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=12.1
Q ss_pred EEEEccCCcCchhHH
Q psy15189 40 VMVLEDDVRFESFFR 54 (150)
Q Consensus 40 ~lIlEDD~~l~~~f~ 54 (150)
..=||||..|++++.
T Consensus 50 SFDlEDDlEFCP~Ll 64 (165)
T PF14618_consen 50 SFDLEDDLEFCPNLL 64 (165)
T ss_pred ccccccccccCCCCC
Confidence 455899999999863
No 60
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=26.43 E-value=1e+02 Score=22.03 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=17.9
Q ss_pred cCCCeEEEEccCCcCchhHHHHH
Q psy15189 35 NNHDIVMVLEDDVRFESFFRQKL 57 (150)
Q Consensus 35 ~~~~~~lIlEDD~~l~~~f~~~l 57 (150)
...++.+++++|..+++++.+.+
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l 107 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRM 107 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHH
Confidence 34589999999999988865443
No 61
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=25.50 E-value=77 Score=20.62 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=14.4
Q ss_pred CCcCchhHHHHHHHHHHHhhhCCCCCccEEE
Q psy15189 46 DVRFESFFRQKLATILKELKTKTLPAWDLIY 76 (150)
Q Consensus 46 D~~l~~~f~~~l~~~l~~~~~~~~~~~dii~ 76 (150)
|-.|+..+.+.+.++|+ ++ ||-+|-
T Consensus 55 d~~fp~~IrdAVsqVLk-----GY-DWtLVP 79 (84)
T PF12444_consen 55 DDRFPVCIRDAVSQVLK-----GY-DWTLVP 79 (84)
T ss_pred cccccHHHHHHHHHHhc-----cC-Cceeee
Confidence 44455555555555543 66 998874
No 62
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=25.01 E-value=3.3e+02 Score=21.04 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=47.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccE
Q psy15189 9 YHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDL 74 (150)
Q Consensus 9 ~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~di 74 (150)
|.+.+=-.=.+|-..+=+..|..+...|.++.|=+|| ........+..+.+++.+.+.+. +||=
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieD-tD~~R~~~~~~~~I~~dL~wlGl-~wd~ 69 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIED-TDPERSRPEYVESILEDLKWLGL-DWDE 69 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCc-CCCCCCChHHHHHHHHHHHHcCC-CCCC
Confidence 4444444557888888889999999998888888886 33344455567778888888888 8884
No 63
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=24.61 E-value=3.6e+02 Score=23.57 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCcc
Q psy15189 4 GYADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWD 73 (150)
Q Consensus 4 ~~~~~~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~d 73 (150)
..+.+|.+.+--.=.+|=+.+=+-.|-.+...|..+.|=+||- .....-.+..+.+++.+.+.+. +||
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-D~~R~~~~~~~~i~~~L~WLGl-~wD 71 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-DKERSTKEAVEAIFSGLKWLGL-DWN 71 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-CccccChHHHHHHHHHHHHcCC-CCC
Confidence 4455666776667789999999999999999988999999985 3333444556778888888888 898
No 64
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=24.42 E-value=56 Score=25.68 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.6
Q ss_pred ceeEEeeecHHHHHHHHhhC
Q psy15189 103 YWTLGYLLSRQGARKLTQAR 122 (150)
Q Consensus 103 ~~t~aY~Is~~~A~klL~~~ 122 (150)
.+-+=|.||++|+++++++.
T Consensus 58 ~gR~~Y~iTkkG~e~l~~~~ 77 (260)
T COG1497 58 EGRGEYEITKKGAEWLLEQL 77 (260)
T ss_pred cCCeeEEEehhHHHHHHHHH
Confidence 34567999999999999874
No 65
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=23.77 E-value=1.4e+02 Score=22.47 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=27.3
Q ss_pred HHHHHHHH-cCCCeEEEEccCCcCc-hhHHHHHHHHHHHhhhCCCCCccEEEe
Q psy15189 27 NIWNEVVD-NNHDIVMVLEDDVRFE-SFFRQKLATILKELKTKTLPAWDLIYL 77 (150)
Q Consensus 27 ~~w~~~~~-~~~~~~lIlEDD~~l~-~~f~~~l~~~l~~~~~~~~~~~dii~L 77 (150)
.+++++++ ++.++.+-+=||+.+. .+|.+.+.+.++ +.+ ++.++=+
T Consensus 44 ~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~---~~~--~~G~iGv 91 (217)
T PF13712_consen 44 AAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFE---EDP--NIGMIGV 91 (217)
T ss_dssp THHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHH---H-T--TEEEEES
T ss_pred HHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHh---hCC--CccEEEe
Confidence 45666664 4568999999999996 456544444433 222 6777743
No 66
>PF11972 HTH_13: HTH DNA binding domain; InterPro: IPR021068 The proteins in this entry have not been characterised. They contain a C-terminal helix-turn-helix DNA binding domain.
Probab=23.69 E-value=63 Score=19.22 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.5
Q ss_pred eecHHHHHHHHhhC
Q psy15189 109 LLSRQGARKLTQAR 122 (150)
Q Consensus 109 ~Is~~~A~klL~~~ 122 (150)
=||+++|+++++..
T Consensus 24 ~vT~~~A~~li~eL 37 (54)
T PF11972_consen 24 GVTPQAAQRLIAEL 37 (54)
T ss_pred CCCHHHHHHHHHHh
Confidence 37999999999763
No 67
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=22.96 E-value=2.7e+02 Score=20.81 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=19.5
Q ss_pred cCCCeEEEEccCCcCchhHHHHHHH
Q psy15189 35 NNHDIVMVLEDDVRFESFFRQKLAT 59 (150)
Q Consensus 35 ~~~~~~lIlEDD~~l~~~f~~~l~~ 59 (150)
.+.++++++..|..+++++...+..
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~ 96 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYK 96 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHH
Confidence 3459999999999999987554443
No 68
>KOG3275|consensus
Probab=22.65 E-value=34 Score=23.83 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=16.8
Q ss_pred HHHHHcCCCeEEEEccCCcCc
Q psy15189 30 NEVVDNNHDIVMVLEDDVRFE 50 (150)
Q Consensus 30 ~~~~~~~~~~~lIlEDD~~l~ 50 (150)
-+|++.+.+.-+|+|||-.+.
T Consensus 21 ~kIi~keIPa~ii~Edd~~lA 41 (127)
T KOG3275|consen 21 CKIIRKEIPAKIIFEDDRCLA 41 (127)
T ss_pred eeeecccCCcceEeeccceEE
Confidence 366777888999999998764
No 69
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=21.92 E-value=1.5e+02 Score=22.03 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=20.7
Q ss_pred CCeEEEEccCCcCchhHHHHHHHHHH
Q psy15189 37 HDIVMVLEDDVRFESFFRQKLATILK 62 (150)
Q Consensus 37 ~~~~lIlEDD~~l~~~f~~~l~~~l~ 62 (150)
.++++++++|..+.+++.+.+.+.+.
T Consensus 72 ~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 72 NDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred CCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 47999999999999987766655544
No 70
>KOG3708|consensus
Probab=21.60 E-value=3.7e+02 Score=23.82 Aligned_cols=69 Identities=25% Similarity=0.394 Sum_probs=44.5
Q ss_pred HHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCceecCcceEEeeCCcceeEEeee
Q psy15189 31 EVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDTWVSGSRYLVEASYSYWTLGYLL 110 (150)
Q Consensus 31 ~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~~~~~~~~l~~~~~~~~t~aY~I 110 (150)
..+-+|.+|.++.-|++.++.- .|..++.+++. +.| +++|-... .+. +.-.+-.||++
T Consensus 92 ~~~~~~YDwFll~~D~tYv~a~---~L~~l~~hmsi----n~d-lymGEe~~--------~gs------~rC~l~~G~LL 149 (681)
T KOG3708|consen 92 NMVHNNYDWFLLAKDSTYVNAF---VLLRLIDHMSI----NED-LYMGEEAE--------DGS------GRCRLDTGMLL 149 (681)
T ss_pred HhhccccceEEEecCcceecHH---HHHHHHhhccc----ccc-cccchhhh--------Ccc------Cccccccceee
Confidence 3356788999999999998763 35566666643 444 45562211 111 11223569999
Q ss_pred cHHHHHHHHhh
Q psy15189 111 SRQGARKLTQA 121 (150)
Q Consensus 111 s~~~A~klL~~ 121 (150)
|+....+|...
T Consensus 150 S~s~l~~lrnn 160 (681)
T KOG3708|consen 150 SQSLLHALRNN 160 (681)
T ss_pred cHHHHHHHHhh
Confidence 99999999765
No 71
>COG4342 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.59 E-value=58 Score=25.88 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=23.2
Q ss_pred eEEeeecHHHHHHHHhhCCCCCCchhhhhhH
Q psy15189 105 TLGYLLSRQGARKLTQARPLSNLLPVDEFLP 135 (150)
Q Consensus 105 t~aY~Is~~~A~klL~~~~~~~~~pvD~~l~ 135 (150)
+.==+|+.+.|++|++-.+.....|+|.|++
T Consensus 92 ~~rgiise~~Ae~lrk~lk~k~~~g~dlyIp 122 (291)
T COG4342 92 TSRGIISEEFAEKLRKPLKVKKSNGVDLYIP 122 (291)
T ss_pred HHcccccHHHHHHHHHHhccCcCCCcceecC
Confidence 4444899999999998765555567888764
No 72
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=21.37 E-value=1e+02 Score=18.93 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=13.8
Q ss_pred CCcCchhHHHHHHHHHHHh
Q psy15189 46 DVRFESFFRQKLATILKEL 64 (150)
Q Consensus 46 D~~l~~~f~~~l~~~l~~~ 64 (150)
||.|+++|...-..+++.+
T Consensus 50 dvdfde~fsdiaddilesl 68 (73)
T PF06076_consen 50 DVDFDENFSDIADDILESL 68 (73)
T ss_pred CcccccchhHHHHHHHHHH
Confidence 5678888887776666655
No 73
>PHA02627 hypothetical protein; Provisional
Probab=21.16 E-value=1e+02 Score=18.88 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=13.8
Q ss_pred CCcCchhHHHHHHHHHHHh
Q psy15189 46 DVRFESFFRQKLATILKEL 64 (150)
Q Consensus 46 D~~l~~~f~~~l~~~l~~~ 64 (150)
||.|+++|...-..+++.+
T Consensus 50 dvdfde~fsdiaddilesl 68 (73)
T PHA02627 50 DVDFDEDFSDIADDVLESL 68 (73)
T ss_pred CcccccchHHHHHHHHHHH
Confidence 5678888887776666655
No 74
>KOG2703|consensus
Probab=20.71 E-value=2e+02 Score=24.44 Aligned_cols=36 Identities=11% Similarity=0.340 Sum_probs=26.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCC
Q psy15189 12 RPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDV 47 (150)
Q Consensus 12 ~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~ 47 (150)
..+..|+..-+.--..=...+++.+.++.|||||-.
T Consensus 376 DS~~~~~~~~~~~F~~~l~~~i~~~~~~tlIldDp~ 411 (460)
T KOG2703|consen 376 DSMDEGQKARWQEFLAKLDDIIAGKLPATLILDDPL 411 (460)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcccceEEEeecCC
Confidence 566777777666666666777777778888888865
No 75
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=20.63 E-value=39 Score=27.64 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHHHHHHcCC-CeEEEEccCCcCch-------hHHHHHHHHHHHhhhCCCCCccEEEecc
Q psy15189 16 KGEIGCFLSHYNIWNEVVDNNH-DIVMVLEDDVRFES-------FFRQKLATILKELKTKTLPAWDLIYLGR 79 (150)
Q Consensus 16 ~geiGC~lSH~~~w~~~~~~~~-~~~lIlEDD~~l~~-------~f~~~l~~~l~~~~~~~~~~~dii~L~~ 79 (150)
.|+..|+++|+..|+..-.+.. +..-|+=|.++.++ +=.+.|..++........ +..++-||.
T Consensus 89 dgk~~g~~~~Ls~~q~~Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd-~i~vicl~N 159 (333)
T PF05894_consen 89 DGKLIGYFIPLSGWQKLKSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRD-RIRVICLSN 159 (333)
T ss_pred CCeEEEEEEecchhhhcccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhccc-ceEEEEEec
Confidence 5899999999999999998875 45566666666543 233445556666555443 777777775
No 76
>PRK11204 N-glycosyltransferase; Provisional
Probab=20.50 E-value=1.8e+02 Score=23.77 Aligned_cols=25 Identities=4% Similarity=0.131 Sum_probs=19.4
Q ss_pred CCCeEEEEccCCcCchhHHHHHHHH
Q psy15189 36 NHDIVMVLEDDVRFESFFRQKLATI 60 (150)
Q Consensus 36 ~~~~~lIlEDD~~l~~~f~~~l~~~ 60 (150)
+.++++++++|..+++++.+.+.+.
T Consensus 134 ~~d~i~~lDaD~~~~~d~L~~l~~~ 158 (420)
T PRK11204 134 RSEYLVCIDGDALLDPDAAAYMVEH 158 (420)
T ss_pred CCCEEEEECCCCCCChhHHHHHHHH
Confidence 4589999999999999875544443
No 77
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=20.28 E-value=93 Score=22.59 Aligned_cols=22 Identities=9% Similarity=0.415 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCCeEEEEccCC
Q psy15189 26 YNIWNEVVDNNHDIVMVLEDDV 47 (150)
Q Consensus 26 ~~~w~~~~~~~~~~~lIlEDD~ 47 (150)
+.-.+++.+...++.||+||-.
T Consensus 133 i~~L~~~~~g~~pfTlIidDP~ 154 (161)
T PF03367_consen 133 IEKLDELIEGKRPFTLIIDDPS 154 (161)
T ss_dssp HHHHHHHHCTSS-EEEEEEETT
T ss_pred HHHHHHHHcCCCCEEEEEECCC
Confidence 4455667777779999999964
No 78
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=20.15 E-value=79 Score=22.09 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=18.1
Q ss_pred cCCCeEEEEccCCcCc--hhHHHHHHHHHHHhhhCC
Q psy15189 35 NNHDIVMVLEDDVRFE--SFFRQKLATILKELKTKT 68 (150)
Q Consensus 35 ~~~~~~lIlEDD~~l~--~~f~~~l~~~l~~~~~~~ 68 (150)
++.+.+||+||+..-. ..|......+...+...+
T Consensus 67 sDqD~alv~~d~~~~~~~~~f~~~a~~~~~~L~~~G 102 (138)
T PF03445_consen 67 SDQDNALVFEDEESEEDRAYFEAFAERLVDALDECG 102 (138)
T ss_pred ccccceeeecCccchhHHHHHHHHHHHHHHHHHHcC
Confidence 4578999999933221 234444444444444333
No 79
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=20.14 E-value=4.2e+02 Score=20.58 Aligned_cols=67 Identities=10% Similarity=-0.014 Sum_probs=47.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEE
Q psy15189 8 PYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIY 76 (150)
Q Consensus 8 ~~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~ 76 (150)
+|.+.+=-.=.+|-..+=+..|..+...+.++.|=+|| ........+..+.+++.+.+.+. +||-++
T Consensus 5 RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieD-tD~~R~~~~~~~~I~~dL~wlGl-~wD~~~ 71 (238)
T cd00807 5 RFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDD-TNPEKEEEEYVDSIKEDVKWLGI-KPYKVT 71 (238)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecC-CCCcccchHHHHHHHHHHHHcCC-CCCCce
Confidence 34444444556788888888899888888788888876 44444455566777888888888 888443
Done!