RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15189
         (150 letters)



>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli
           [TaxId: 562]}
          Length = 71

 Score = 25.9 bits (57), Expect = 0.86
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 110 LSRQGARKLTQARPLSNLLPVDEFL--PLLSG 139
           LS   AR L Q RP      VD+FL  PLL+ 
Sbjct: 24  LSPVQARALLQQRPAKGWEDVDQFLAQPLLAD 55


>d2jpoa1 a.39.2.1 (A:1-142) Moth pheromone-binding protein, PBP
          {Polyphemus moth (Antheraea polyphemus) [TaxId: 7120]}
          Length = 142

 Score = 24.9 bits (54), Expect = 3.2
 Identities = 6/45 (13%), Positives = 15/45 (33%)

Query: 19 IGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKE 63
          I C  +  ++ +   + +H            +    Q+L  I+  
Sbjct: 52 INCLATKLDVVDPDGNLHHGNAKDFAMKHGADETMAQQLVDIIHG 96


>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 316

 Score = 25.3 bits (55), Expect = 3.2
 Identities = 14/119 (11%), Positives = 37/119 (31%), Gaps = 14/119 (11%)

Query: 41  MVLEDDVRFESFFRQKLATILKELKT-------KTLPAWDLIYLGRKK----LSEKPDTW 89
           + L    +       +   + + ++             + +++L        + +  + +
Sbjct: 157 LTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRF 216

Query: 90  VSGSRYLVEAS---YSYWTLGYLLSRQGARKLTQARPLSNLLPVDEFLPLLSGKHPEDL 145
                  V+ S   Y    L   L R G   +T  +PLS  +  D +       +  ++
Sbjct: 217 HPYEGTKVKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEI 275


>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 128

 Score = 24.7 bits (53), Expect = 4.0
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 29  WNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLI---YLGRKKLSEK 85
           +N ++ N+    +V    ++F+  ++ + ATIL+    K +PAW+     Y G+K  S+ 
Sbjct: 59  YNTIISNSLSFDIV-NKSLQFK--YKTQKATILEASLKKLIPAWEFTIIPYNGQKHQSDI 115

Query: 86  PD 87
            D
Sbjct: 116 TD 117


>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 188

 Score = 24.0 bits (52), Expect = 8.7
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 6/56 (10%)

Query: 28  IWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLS 83
           I  E+  +       +      +     +L  +L     +     D IY+  +KLS
Sbjct: 70  IL-ELFWHPD-----ILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLS 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 592,711
Number of extensions: 25877
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 8
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)