BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1519
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JIK9|RT34_MOUSE 28S ribosomal protein S34, mitochondrial OS=Mus musculus GN=Mrps34
PE=2 SV=1
Length = 218
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 27 YGVGRLLYRQRF-QRYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEP 85
+G+GRL+ R+ + ++ EPCY+++ +V+P NL++ + F+G E
Sbjct: 74 FGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGR-------AWGILTFKGKSED 126
Query: 86 EVQEIFATSYKPDYRLIPKHEEQEWLRRTGKGEKKIQYIDPWVDMPPLLKKVV 138
+EI Y D+RL+PKHEE+ + T K E ++ V PPLL+ ++
Sbjct: 127 TAREIEQVMYH-DWRLVPKHEEEAFTAFTAKPEDRLNS----VPYPPLLRAMI 174
>sp|P82929|RT34_BOVIN 28S ribosomal protein S34, mitochondrial OS=Bos taurus GN=MRPS34
PE=1 SV=2
Length = 218
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 17 LWEILGNLKGYGVGRLLYRQRF-QRYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYV 75
L ++LG L +G+GRL+ R+ + ++ EPCY+++ +V+P NL++ +
Sbjct: 64 LLQLLGRLPFFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGK-------AWG 116
Query: 76 ASVFRGVLEPEVQEIFATSYKPDYRLIPKHEEQEWLRRTGKGEKKIQYIDPWVDMPPLLK 135
F+G E E +EI + D+RL+PKHEE + T E+ + V PPLL+
Sbjct: 117 ILTFKGKTESEAREIEQVMHH-DWRLVPKHEEAAFTSFTPAPEETPRP----VPYPPLLR 171
Query: 136 KVV 138
++
Sbjct: 172 AMI 174
>sp|P82930|RT34_HUMAN 28S ribosomal protein S34, mitochondrial OS=Homo sapiens GN=MRPS34
PE=1 SV=2
Length = 218
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 27 YGVGRLLYRQRF-QRYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEP 85
+G+GRL+ R+ + ++ EPCY+++ +V+P NL++ + F+G E
Sbjct: 74 FGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGK-------AWGILTFKGKTES 126
Query: 86 EVQEIFATSYKPDYRLIPKHEEQEWLRRTGKGEKKIQYIDPWVDMPPLLKKVV 138
E +EI Y D+RL+PKHEE+ + T E + V PPLL+ ++
Sbjct: 127 EAREIEHVMYH-DWRLVPKHEEEAFTAFTPAPEDSLAS----VPYPPLLRAMI 174
>sp|B3GYL9|PRMA_ACTP7 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=prmA PE=3
SV=1
Length = 293
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 79 FRGVLEPEVQEIFATSYKPDYRLIPKHEEQEWLRRTG 115
G+L + + + +Y PD+ L P E++EW R TG
Sbjct: 255 LSGILATQAESV-CEAYAPDFNLDPVVEKEEWCRITG 290
>sp|A3N2I5|PRMA_ACTP2 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=prmA PE=3
SV=1
Length = 293
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 79 FRGVLEPEVQEIFATSYKPDYRLIPKHEEQEWLRRTG 115
G+L + + + +Y PD+ L P E++EW R TG
Sbjct: 255 LSGILATQAESV-CEAYAPDFNLDPVVEKEEWCRITG 290
>sp|B0WR18|EIF3L_CULQU Eukaryotic translation initiation factor 3 subunit L OS=Culex
quinquefasciatus GN=CPIJ009242 PE=3 SV=1
Length = 537
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 65 HENYRKVMVYVASVFRGVLEPEVQEIFATSYKPDYRLIPKHEEQEWLRRTGKGEKKIQYI 124
HE+ +K +VY SV +G + E+Q ++ ++ PK EQ + ++ E ++ ++
Sbjct: 33 HEDVKKFLVYFCSVIKGGVVYEIQNLYENTF-------PKLSEQHFEKKAWPSEDEVAHL 85
>sp|Q68Y49|CIPKJ_ORYSJ CBL-interacting protein kinase 19 OS=Oryza sativa subsp. japonica
GN=CIPK19 PE=1 SV=1
Length = 508
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 26/184 (14%)
Query: 21 LGNLKGYGVGRLLYRQRFQRYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFR 80
LG L G+G +Y+ R EP K+L + G + PH R++ ++ R
Sbjct: 39 LGRLLGHGTFAKVYQARSADSGEPVAIKVLDKEKAMRHGLV--PHIK-REI-----AILR 90
Query: 81 GVLEPEVQ---EIFATSYKPDYRLIPKHEEQEWLRRTGKGEKK----IQYIDPWVDMPPL 133
V P + E+ AT K Y ++ E R KG K +Y V
Sbjct: 91 RVRHPNIVRLFEVMATKSKI-YFVMELVRGGELFGRVAKGRLKEDTARRYFQQLVSAVGF 149
Query: 134 L--KKVVARDLELENKTPEPNSFRMKVSFLETCNNLKREADENHPADIKIESFFGTP--L 189
+ V RDL+ EN + + +KVS L AD+ HP D + +F GTP +
Sbjct: 150 CHARGVFHRDLKPENLLVDEHG-DLKVSDF----GLSAVADQFHP-DGLLHTFCGTPSYV 203
Query: 190 SPEL 193
+PE+
Sbjct: 204 APEV 207
>sp|Q8BR21|F180A_MOUSE Protein FAM180A OS=Mus musculus GN=Fam180a PE=2 SV=1
Length = 173
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 138 VARDLELENKTPEPNSFRMKVSFLETCNNL--KREAD--------ENHPADIKIESF 184
++ DLE+ K E S R +SF CNN+ KR D NHP +K E F
Sbjct: 67 ISPDLEISIKDEELASLRKALSFHSICNNIIPKRIPDIRRLSANLANHPGILKKEDF 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,058,107
Number of Sequences: 539616
Number of extensions: 3901858
Number of successful extensions: 8088
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8079
Number of HSP's gapped (non-prelim): 18
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)