Query psy1519
Match_columns 210
No_of_seqs 80 out of 82
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 22:52:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4579 Isocitrate dehydrogena 40.6 12 0.00026 37.1 0.8 43 24-67 460-502 (578)
2 COG5628 Predicted acetyltransf 31.9 4.1 8.8E-05 34.2 -3.4 25 16-40 69-93 (143)
3 PTZ00328 eukaryotic initiation 30.0 63 0.0014 27.9 3.4 58 43-108 39-101 (166)
4 KOG3271|consensus 24.4 2.6E+02 0.0057 24.1 6.1 93 30-140 30-127 (156)
5 cd05822 TLP_HIUase HIUase (5-h 22.6 1.3E+02 0.0028 24.0 3.8 74 5-81 33-111 (112)
6 PRK02946 aceK bifunctional iso 20.2 36 0.00078 34.5 0.1 43 24-67 461-503 (575)
7 COG5139 Uncharacterized conser 14.0 1.2E+02 0.0025 29.2 1.9 30 15-44 233-269 (397)
8 PF12109 CXCR4_N: CXCR4 Chemok 12.5 78 0.0017 20.9 0.2 11 38-48 16-26 (33)
9 PRK03757 hypothetical protein; 12.3 3.4E+02 0.0075 22.8 4.1 35 40-86 101-135 (191)
10 KOG0419|consensus 12.0 1.7E+02 0.0038 24.9 2.2 34 152-196 51-84 (152)
No 1
>COG4579 Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms]
Probab=40.64 E-value=12 Score=37.06 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=29.5
Q ss_pred CCCCccceEEEecccccCCCCceEEEEEEeeccCCCCCCCCCCC
Q psy1519 24 LKGYGVGRLLYRQRFQRYPEPCYFKILKVQPVQHDGNLENPHEN 67 (210)
Q Consensus 24 L~nfGVGRlVtR~~~~r~pEP~Yw~ItkV~p~~~~~~~~~~~~g 67 (210)
++||||-|- -|..|-.|+|=||++=..++-.|.|-+.++.+.+
T Consensus 460 ~KNFGVTRH-GRVVFYDYDEIcYlTevNfRdiP~PR~pEdEMss 502 (578)
T COG4579 460 FKNFGVTRH-GRVVFYDYDEICYMTEVNFRDIPPPRYPEDEMAS 502 (578)
T ss_pred HhhcCcccc-ceEEEeeccceeeeeecccccCCCCCCchhhhcc
Confidence 589999442 2333667899999999888877765444444444
No 2
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=31.87 E-value=4.1 Score=34.22 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.4
Q ss_pred cHHHHHhcCCCCccceEEEeccccc
Q psy1519 16 TLWEILGNLKGYGVGRLLYRQRFQR 40 (210)
Q Consensus 16 ~L~eIl~~L~nfGVGRlVtR~~~~r 40 (210)
+=+-|++.-++.||||.+++..|+-
T Consensus 69 ~efFIi~k~~~~GvGR~aaK~If~~ 93 (143)
T COG5628 69 AEFFIVRKHRRRGVGRAAAKAIFGS 93 (143)
T ss_pred hheEeeehhhccchhHHHHHHHHHH
Confidence 3456899999999999999999864
No 3
>PTZ00328 eukaryotic initiation factor 5a; Provisional
Probab=30.03 E-value=63 Score=27.92 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=41.3
Q ss_pred CCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEeeeeeccCceEEeccc-----CCCCCeeeeCcchHH
Q psy1519 43 EPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEPEVQEIFAT-----SYKPDYRLIPKHEEQ 108 (210)
Q Consensus 43 EP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~TfRGkt~~~~~eI~~~-----~yK~DWrLvPKhEE~ 108 (210)
+|| +|+.+..+-+ .+ ||.-|++.-|+-.|-|++.+...-.... -.|.+|+||--.++.
T Consensus 39 rPC--KIveistSKt----GK--HGhAK~~ivaidIFTgkK~edi~Ps~hnv~VP~V~r~~yqli~I~~d~ 101 (166)
T PTZ00328 39 RPC--KVIDLSVSKT----GK--HGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNE 101 (166)
T ss_pred eee--EEEEEecCCC----Cc--CCceEEEEEEEecCCCCEEeeecCccceeEeeeEEeeEEEEEEEcCCC
Confidence 577 7888866643 55 8988899999999999987543222111 146789999887764
No 4
>KOG3271|consensus
Probab=24.43 E-value=2.6e+02 Score=24.06 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=56.8
Q ss_pred ceEEEecccccCCCCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEeeeeeccCceEEecccC-----CCCCeeeeCc
Q psy1519 30 GRLLYRQRFQRYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEPEVQEIFATS-----YKPDYRLIPK 104 (210)
Q Consensus 30 GRlVtR~~~~r~pEP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~TfRGkt~~~~~eI~~~~-----yK~DWrLvPK 104 (210)
|..|+|+. || +|+.+..+- +=.||.-||-.=++-.|-|++.....--...+ .+.||.||--
T Consensus 30 G~vviK~r------pc--kivEmSTsK------tGKHGhAKvh~vaidifTgkk~edI~psthn~dVp~vkr~~yqLidI 95 (156)
T KOG3271|consen 30 GHVVIKGR------PC--KIVEMSTSK------TGKHGHAKVHIVAIDIFTGKKLEDICPSTHNMDVPVVKRVDYQLIDI 95 (156)
T ss_pred CEEEEcCC------Cc--eEEEeeccc------CCcCCceEEEEEEEEeecCcccccccCCCCccccCccccceeEEEEe
Confidence 45666665 66 675554443 34488888999999999999976433222222 4678999987
Q ss_pred chHHHHHHhcCCCCcccccCCCcccCCHHHHHHHHH
Q psy1519 105 HEEQEWLRRTGKGEKKIQYIDPWVDMPPLLKKVVAR 140 (210)
Q Consensus 105 hEE~~f~~~~~~~~~~i~~~P~~v~~PPLlr~~i~~ 140 (210)
++- |+++....-+.- ..-..|.--|...+...
T Consensus 96 sd~--~~sl~t~sG~~k--dDlklp~~el~~~i~~~ 127 (156)
T KOG3271|consen 96 SDG--YLSLMTDSGETK--DDLKLPEGELGNQIRQG 127 (156)
T ss_pred cCC--eEEEEcCCCCcc--hhccCcchhHHHHHHHh
Confidence 765 888876332222 22344554555554433
No 5
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=22.61 E-value=1.3e+02 Score=23.98 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=50.2
Q ss_pred eeccc-CCCCCCcHHHHHhcCCCC--ccceEEEecc--cccCCCCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEee
Q psy1519 5 YIGRT-TDFAGKTLWEILGNLKGY--GVGRLLYRQR--FQRYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVF 79 (210)
Q Consensus 5 yIGr~-~~~~GK~L~eIl~~L~nf--GVGRlVtR~~--~~r~pEP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~Tf 79 (210)
.|+.. ||..|..-.-++. -..+ |+=+++-... |..-..++|+-..-|.+.-+. +++..|-|--+--||.-||
T Consensus 33 ~i~~~~Td~DGR~~~~~~~-~~~~~~G~Y~l~F~~~~Yf~~~~~~~F~p~V~i~F~i~~--~~~HYHvPlLlSP~sYSTY 109 (112)
T cd05822 33 LLATGVTNADGRCDDLLPP-GAQLAAGTYKLTFDTGAYFAARGQESFYPEVEVRFTITD--PTEHYHVPLLLSPFGYSTY 109 (112)
T ss_pred EEEEEEECCCCCccCcccc-cccCCCeeEEEEEEhhhhhhhcCCCccceeeEEEEEECC--CCCCEEEeEEecCCceecc
Confidence 45553 7888876432222 1234 5555555544 434557899999888888652 4678888888999999999
Q ss_pred ee
Q psy1519 80 RG 81 (210)
Q Consensus 80 RG 81 (210)
||
T Consensus 110 RG 111 (112)
T cd05822 110 RG 111 (112)
T ss_pred cC
Confidence 99
No 6
>PRK02946 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated
Probab=20.23 E-value=36 Score=34.50 Aligned_cols=43 Identities=26% Similarity=0.413 Sum_probs=30.2
Q ss_pred CCCCccceEEEecccccCCCCceEEEEEEeeccCCCCCCCCCCC
Q psy1519 24 LKGYGVGRLLYRQRFQRYPEPCYFKILKVQPVQHDGNLENPHEN 67 (210)
Q Consensus 24 L~nfGVGRlVtR~~~~r~pEP~Yw~ItkV~p~~~~~~~~~~~~g 67 (210)
+|||||-|- -|..|=.|+|=||+|=...+-.|.+-|.++.+.|
T Consensus 461 ~KNFGVTRh-gRVVFYDYDEI~ylTd~nFR~iP~pr~~e~ems~ 503 (575)
T PRK02946 461 FKNFGVTRH-GRVVFYDYDEICYLTECNFRDIPPPRYPEDEMSS 503 (575)
T ss_pred ccccCcccc-ceEEEecccceeeecccccccCCCCCChhHhhcc
Confidence 699999542 2333777999999998888877776554554444
No 7
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=14.03 E-value=1.2e+02 Score=29.22 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=21.9
Q ss_pred CcHHHHHhcCC-------CCccceEEEecccccCCCC
Q psy1519 15 KTLWEILGNLK-------GYGVGRLLYRQRFQRYPEP 44 (210)
Q Consensus 15 K~L~eIl~~L~-------nfGVGRlVtR~~~~r~pEP 44 (210)
|.|++||..|| .-||||+|.=.+-..-+|+
T Consensus 233 ksL~dvL~~lpI~tEHL~eSgvGrIV~FYtiskk~e~ 269 (397)
T COG5139 233 KSLLDVLKTLPIHTEHLVESGVGRIVYFYTISKKEEK 269 (397)
T ss_pred HHHHHHHhhCCchHHHhhhcCCceEEEEEecCCcccH
Confidence 67999999876 5699999986554444443
No 8
>PF12109 CXCR4_N: CXCR4 Chemokine receptor N terminal; InterPro: IPR022726 This entry represents the N-terminal region of the CXC type 4 chemokine receptor. CXCR4 and its ligand stromal cell-derived factor-1 (a.k.a. CXCL12) are essential for proper fetal development. CXCR4 is also the major coreceptor for T-tropic strains of Human immunodeficiency virus 1, and SDF-1 inhibits HIV-1 infection. Additionally, SDF-1 and CXCR4 mediate cancer cell migration and metastasis. The N-terminal domain of most chemokine receptors is the ligand binding domain and so the N-terminal domain of CXCR4 is the binding site for SDF-1 [].; PDB: 3OE9_B 3OE0_A 3ODU_A 2K03_D 3OE8_A 2K05_D 3OE6_A 2K04_B.
Probab=12.53 E-value=78 Score=20.85 Aligned_cols=11 Identities=36% Similarity=1.174 Sum_probs=4.9
Q ss_pred cccCCCCceEE
Q psy1519 38 FQRYPEPCYFK 48 (210)
Q Consensus 38 ~~r~pEP~Yw~ 48 (210)
+..|.|||||.
T Consensus 16 y~~~kEpCf~~ 26 (33)
T PF12109_consen 16 YDSYKEPCFRE 26 (33)
T ss_dssp SSBS-S--SS-
T ss_pred cccccCccccc
Confidence 45578999974
No 9
>PRK03757 hypothetical protein; Provisional
Probab=12.29 E-value=3.4e+02 Score=22.83 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=24.9
Q ss_pred cCCCCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEeeeeeccCc
Q psy1519 40 RYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEPE 86 (210)
Q Consensus 40 r~pEP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~TfRGkt~~~ 86 (210)
+||+-+ ++.++|..... ..+.+-|.+|.+|++.+-
T Consensus 101 ~yP~a~-F~st~v~~~~~-----------~~~~v~G~LTi~GvTkpv 135 (191)
T PRK03757 101 KFPQAT-FTSTSVKKDGD-----------GTLDITGDLTLNGVTKPV 135 (191)
T ss_pred cCCEEE-EEEEEEEECCC-----------ceEEEEEEEEECCEeEEE
Confidence 466654 46777775432 345999999999999854
No 10
>KOG0419|consensus
Probab=12.01 E-value=1.7e+02 Score=24.93 Aligned_cols=34 Identities=24% Similarity=0.564 Sum_probs=24.2
Q ss_pred ccceeeEEEecCccccccccccCCCCceeEeecCCCcCChhhhcc
Q psy1519 152 NSFRMKVSFLETCNNLKREADENHPADIKIESFFGTPLSPELYEI 196 (210)
Q Consensus 152 ~~~~l~l~~~~~~~~~~r~A~ege~pt~~~~~~~g~~~~p~l~~~ 196 (210)
-+++|.|+|...+.+ ..|+|+|-+ +++-|..|+.
T Consensus 51 gtFkLtl~FteeYpn--------kPP~VrFvs---~mFHPNvya~ 84 (152)
T KOG0419|consen 51 GTFKLTLEFTEEYPN--------KPPTVRFVS---KMFHPNVYAD 84 (152)
T ss_pred ceEEEEEEcccccCC--------CCCeeEeee---eccCCCcCCC
Confidence 357899999887764 489999944 4566666654
Done!