Query psy1519
Match_columns 210
No_of_seqs 80 out of 82
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 22:53:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kl0_A Putative thiamin biosyn 19.3 1E+02 0.0035 21.3 3.4 25 1-25 1-25 (73)
2 2fgs_A Putative periplasmic pr 16.5 1.3E+02 0.0043 23.9 3.7 34 40-85 77-110 (179)
3 1wub_A Conserved hypothetical 14.7 1.3E+02 0.0045 23.6 3.4 34 40-85 76-109 (178)
4 2lnb_A Z-DNA-binding protein 1 14.2 23 0.00078 26.3 -1.1 30 12-50 46-75 (80)
5 3qir_A PIWI-like protein 2; st 12.9 1.3E+02 0.0043 23.7 2.8 35 164-207 38-74 (148)
6 3o7v_X PIWI-like protein 1; PI 11.3 1.3E+02 0.0046 22.9 2.4 35 164-207 38-74 (124)
7 3eps_A Isocitrate dehydrogenas 11.2 20 0.00068 34.9 -2.8 39 24-63 460-498 (578)
8 2zkr_f 60S ribosomal protein L 10.7 55 0.0019 28.8 0.0 39 15-55 29-69 (266)
9 1y0g_A Protein YCEI; lipid bin 10.5 2.3E+02 0.0079 22.5 3.7 33 41-86 102-134 (191)
10 4drr_A Outer capsid protein VP 9.9 3.3E+02 0.011 22.4 4.4 37 77-113 114-158 (163)
No 1
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=19.35 E-value=1e+02 Score=21.28 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.9
Q ss_pred CCeeeecccCCCCCCcHHHHHhcCC
Q psy1519 1 MPIKYIGRTTDFAGKTLWEILGNLK 25 (210)
Q Consensus 1 ~~IkyIGr~~~~~GK~L~eIl~~L~ 25 (210)
|.|..-|....+.|.+|.++|..|.
T Consensus 1 M~I~vNG~~~e~~~~Tl~~LL~~l~ 25 (73)
T 2kl0_A 1 MLVTINGEQREVQSASVAALMTELD 25 (73)
T ss_dssp CCEEETTEEECCCCSBHHHHHHHTT
T ss_pred CEEEECCEEEEcCCCcHHHHHHHcC
Confidence 7788889987779999999999885
No 2
>2fgs_A Putative periplasmic protein; lipid binding protein, structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Campylobacter jejuni}
Probab=16.47 E-value=1.3e+02 Score=23.93 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=24.2
Q ss_pred cCCCCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEeeeeeccC
Q psy1519 40 RYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEP 85 (210)
Q Consensus 40 r~pEP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~TfRGkt~~ 85 (210)
+||+-+ ++.++|++... ...++-|.||.+|++.+
T Consensus 77 ~~P~at-F~st~v~~~g~-----------~~~~v~G~LTi~GvTkp 110 (179)
T 2fgs_A 77 KYPDMT-FTMKKYEKIDN-----------EKGKMTGTLTIAGVSKD 110 (179)
T ss_dssp TCCEEE-EEEEEEEESSS-----------SEEEEEEEEEETTEEEE
T ss_pred cCCEEE-EEEEEEEECCC-----------ceEEEEEEEEECcEeEE
Confidence 456544 46778876532 24599999999999984
No 3
>1wub_A Conserved hypothetical protein TT1927B; beta-barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: OTP; 1.65A {Thermus thermophilus} SCOP: b.61.6.1
Probab=14.74 E-value=1.3e+02 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=24.2
Q ss_pred cCCCCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEeeeeeccC
Q psy1519 40 RYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEP 85 (210)
Q Consensus 40 r~pEP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~TfRGkt~~ 85 (210)
+||+-+ ++.++|.+... ...++-|.||.+|++.+
T Consensus 76 ~~P~~t-F~st~v~~~g~-----------~~~~v~G~LTi~GvTkp 109 (178)
T 1wub_A 76 QYPEIR-FVSTQIEPLGG-----------NRYRIQGNLTIRDITKP 109 (178)
T ss_dssp TCCEEE-EEEEEEEEEET-----------TEEEEEEEEEETTEEEE
T ss_pred cCCEEE-EEEEEEEECCC-----------CcEEEEEEEEECcEeEE
Confidence 456544 46778876532 24599999999999984
No 4
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=14.23 E-value=23 Score=26.34 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=18.2
Q ss_pred CCCCcHHHHHhcCCCCccceEEEecccccCCCCceEEEE
Q psy1519 12 FAGKTLWEILGNLKGYGVGRLLYRQRFQRYPEPCYFKIL 50 (210)
Q Consensus 12 ~~GK~L~eIl~~L~nfGVGRlVtR~~~~r~pEP~Yw~It 50 (210)
..-|-+..++..|+.=|- ++ =|.+|||.|+
T Consensus 46 vdKKeVdKaik~LKkEgk--I~-------SPkRCyw~~~ 75 (80)
T 2lnb_A 46 APKRELNQVLYRMKKELK--VS-------LTSPATWCLG 75 (80)
T ss_dssp SCHHHHHHHHHHHHHTTS--EE-------EEETTEEEES
T ss_pred CCHHHHHHHHHHHHHcCC--cc-------CCCCceeeCC
Confidence 344555666666665443 22 1678999996
No 5
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=12.91 E-value=1.3e+02 Score=23.68 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=24.3
Q ss_pred cccccccccc--CCCCceeEeecCCCcCChhhhccchhHHHHhhhc
Q psy1519 164 CNNLKREADE--NHPADIKIESFFGTPLSPELYEIKPEVAEYFKQK 207 (210)
Q Consensus 164 ~~~~~r~A~e--ge~pt~~~~~~~g~~~~p~l~~~~~~~~~~~~~~ 207 (210)
.|+.|||++= +..|.-.|...-|+ .--++|||+++
T Consensus 38 nnk~YrI~~I~~~~~p~s~F~~~dg~---------~iT~~eYf~~k 74 (148)
T 3qir_A 38 NNRTYRIDDVDWNKTPKDSFTMSDGK---------EITFLEYYSKN 74 (148)
T ss_dssp TCCEEECCEEETTCCTTSEEECTTSC---------EEEHHHHHHHH
T ss_pred CCcEEEEeeecCCCCcCccccCCCCC---------cccHHHHHHHH
Confidence 4789999975 67777777553232 15689999875
No 6
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=11.30 E-value=1.3e+02 Score=22.89 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=22.9
Q ss_pred cccccccccc--CCCCceeEeecCCCcCChhhhccchhHHHHhhhc
Q psy1519 164 CNNLKREADE--NHPADIKIESFFGTPLSPELYEIKPEVAEYFKQK 207 (210)
Q Consensus 164 ~~~~~r~A~e--ge~pt~~~~~~~g~~~~p~l~~~~~~~~~~~~~~ 207 (210)
.|+.|||++= +-.|.-.|...=|+ .--++|||+++
T Consensus 38 nnk~YrI~~I~~~~~p~s~F~~~dg~---------~~T~~eYyk~k 74 (124)
T 3o7v_X 38 NNKTYRVDDIDWDQNPKSTFKKADGS---------EVSFLEYYRKQ 74 (124)
T ss_dssp SSCEEECCEEETTCCTTCEEECTTSC---------EEEHHHHHHHH
T ss_pred CCeEEEEeeeCCCCCccCcccCCCCC---------eeeHHHHHHHH
Confidence 4789999864 46666666542222 15689999875
No 7
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding, glyoxylate bypass, nucleotide-binding, protein phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157} PDB: 3lcb_A* 3lc6_A*
Probab=11.20 E-value=20 Score=34.89 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=25.2
Q ss_pred CCCCccceEEEecccccCCCCceEEEEEEeeccCCCCCCC
Q psy1519 24 LKGYGVGRLLYRQRFQRYPEPCYFKILKVQPVQHDGNLEN 63 (210)
Q Consensus 24 L~nfGVGRlVtR~~~~r~pEP~Yw~ItkV~p~~~~~~~~~ 63 (210)
+|||||-|- -|..|=.|+|=||++=...+-.|.+.+.++
T Consensus 460 ~KNFGVTRh-gRVVFYDYDEI~ylTdcnFR~iP~p~~~Ed 498 (578)
T 3eps_A 460 FKNFGVTRH-GRVVFYDYDEICYMTEVNFRDIPPPRYPED 498 (578)
T ss_dssp GGGEEECTT-CCEEECCGGGCEESTTCEECSSCCCCCC--
T ss_pred cccCCcccc-ceEEEecccceeeecccccccCCCCcChhh
Confidence 689998431 122266789999998777777776544343
No 8
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=10.70 E-value=55 Score=28.80 Aligned_cols=39 Identities=23% Similarity=0.627 Sum_probs=0.0
Q ss_pred CcHHHHHhcCCCCccceEEEecc-cccCCC-CceEEEEEEeec
Q psy1519 15 KTLWEILGNLKGYGVGRLLYRQR-FQRYPE-PCYFKILKVQPV 55 (210)
Q Consensus 15 K~L~eIl~~L~nfGVGRlVtR~~-~~r~pE-P~Yw~ItkV~p~ 55 (210)
..||| .+-+|||+|.-+--+. ..||=. |+|-+|-+=+..
T Consensus 29 npl~e--krpknf~ig~~i~pkrdl~rfvkwp~yirlqrq~~i 69 (266)
T 2zkr_f 29 NPLFE--KRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAI 69 (266)
T ss_dssp -------------------------------------------
T ss_pred Ccccc--cCccccccCCCcccccchHhHhccchHHHHHHHHHH
Confidence 34665 5788999997774433 555543 899988765544
No 9
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=10.52 E-value=2.3e+02 Score=22.48 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCCCceEEEEEEeeccCCCCCCCCCCCceeeEEEEEEeeeeeccCc
Q psy1519 41 YPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEPE 86 (210)
Q Consensus 41 ~pEP~Yw~ItkV~p~~~~~~~~~~~~g~rkvkAwg~~TfRGkt~~~ 86 (210)
||+-+ ++.++|.+... . .++-|.+|.+|++.+-
T Consensus 102 ~P~at-F~st~v~~~g~-----------~-~~v~G~LTi~GvTkpv 134 (191)
T 1y0g_A 102 YPQAT-FTSTSVKKDGD-----------E-LDITGDLTLNGVTKPV 134 (191)
T ss_dssp CCEEE-EEEEEEEEETT-----------E-EEEEEEEEETTEEEEE
T ss_pred CCeEE-EEEEEEEEcCC-----------C-EEEEEEEEECCEEEEE
Confidence 55544 46777775431 2 5999999999999843
No 10
>4drr_A Outer capsid protein VP4; viral protein, cell attachment factor, histo blood antigen, galectin-fold; 1.50A {Rotavirus SP} PDB: 4drv_A* 4ds0_A*
Probab=9.94 E-value=3.3e+02 Score=22.41 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=24.2
Q ss_pred EeeeeeccCceEEecccC--------CCCCeeeeCcchHHHHHHh
Q psy1519 77 SVFRGVLEPEVQEIFATS--------YKPDYRLIPKHEEQEWLRR 113 (210)
Q Consensus 77 ~TfRGkt~~~~~eI~~~~--------yK~DWrLvPKhEE~~f~~~ 113 (210)
+||-|.+-..-..-+.++ -..|+-+||+.+|+.-.++
T Consensus 114 ~ty~GeTPnatt~yytt~N~~~v~i~~~cdFYIIPrsQe~~C~eY 158 (163)
T 4drr_A 114 YWYAGTTPNASESYYLTINNDNSNVSCDAEFYLIPRSQTELCTQY 158 (163)
T ss_dssp EEEEEETTSCEEEEEEECCCTTCEEEESSCEEEEEGGGHHHHHHH
T ss_pred EEEEcCCCCcccceeEeeccCcEEEEEeceEEEecCcHHHHHHHH
Confidence 478887754433322221 2389999999999876654
Done!