RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1519
(210 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-05
Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 66/203 (32%)
Query: 52 VQPVQ-HDGNLEN----PHENYRKVMVYVASVFRGVLEPEVQEIFATSYKPDYRLIPKHE 106
+P+ G+LE+ P ++ ++AS + E F +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASF-----FIASQLQ--------EQFNKILPEPTEGFAADD 52
Query: 107 EQEWLRRTGKGE---KKIQYIDPWVD------MPPLLKKV----------------VARD 141
E T E K + Y+ V+ +L +A
Sbjct: 53 EP-----TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 142 LELENKTPEPNSFRMKVSFLETCNNLKREADENHPA---------DIKIESFF---GTPL 189
L EN T + + +++ KR D+ + + ++ + F G
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 190 SP-----ELYEI-KPEVAEYFKQ 206
+LY+ V + K
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKF 190
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 5e-04
Identities = 31/208 (14%), Positives = 59/208 (28%), Gaps = 55/208 (26%)
Query: 49 ILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEPEVQEIFATSYKPDYRLIPKHEEQ 108
IL + + H ++ ++ E VQ+ + +Y+ + +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLF----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 109 EWLRRTGKGEKKIQYIDP-WVDMPPLLKKVVARD---LELENK----TPEPN-------- 152
E + + I+ D + D K V+R L+L P N
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 153 ------------SFRMKVSF------------------LETCNNLKREADENHPADIKIE 182
S++++ LE L + D N + + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSD 218
Query: 183 SFFGTPLSPELYEIKPEVAEYFKQKKPY 210
L I+ E+ K KPY
Sbjct: 219 HSSNIKLRIH--SIQAELRRLLKS-KPY 243
Score = 29.8 bits (66), Expect = 0.81
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 36/145 (24%)
Query: 33 LYRQRFQRYPEPCYFKILKVQPVQHDGNLENPHENYRKVMVYVASVFRGVLEPEVQEIFA 92
L+R Y P F D + + Y ++ + + PE +F
Sbjct: 445 LHRSIVDHYNIPKTF--------DSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFR 494
Query: 93 TSYKPDYRLIPKHEEQEWLRRTGKGEKKIQYID-PWVDMPPLLKKVVARDLELENK--TP 149
+ D+R +L E+KI++ W +L + + L+
Sbjct: 495 MVFL-DFR---------FL------EQKIRHDSTAWNASGSILNTL--QQLKFYKPYICD 536
Query: 150 EPNSFRMKVS----FLETCN-NLKR 169
+ V+ FL NL
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLIC 561
Score = 28.7 bits (63), Expect = 1.6
Identities = 20/153 (13%), Positives = 40/153 (26%), Gaps = 41/153 (26%)
Query: 83 LEPEVQEIFATSYKPDYRLIPKHEEQEWLRRTGKGEK-KIQYI------DPWV------- 128
++P S R+ H Q LRR K + + + +
Sbjct: 209 IDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 129 --------------DMPPLLKKVVARDLELENKTPEPNSFRMKVSFLET-CNNLKREADE 173
+ ++ D TP+ + + +L+ +L RE
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLT 324
Query: 174 NHPADIKIESFFGTPLSPELYEIKPEVAEYFKQ 206
+P + I E + +K
Sbjct: 325 TNPRRLSI---IA-----ESIRDGLATWDNWKH 349
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 31.9 bits (73), Expect = 0.14
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 167 LKREADENHPADIKIESFFGTPLSPELYEIKPEVA-EYFKQKKPY 210
+ A ++ P+D + L +LY+I P V E K K P+
Sbjct: 331 QREFALKHLPSDPMFK------LVAQLYKIVPNVLLEQGKAKNPW 369
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.30
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 9/36 (25%)
Query: 150 EPNSFRMKVSFLETCNNLKREADENHPA-DIK--IE 182
E + + K L+ +LK AD++ PA IK +E
Sbjct: 18 EKQALK-K---LQ--ASLKLYADDSAPALAIKATME 47
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A
{Xanthomonas campestris PV}
Length = 266
Score = 29.9 bits (68), Expect = 0.47
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 50 LKVQPVQHDGNLENPHENYRKVMVYVASVFRG---VLEPEVQEIFATSYKPDYRLI---P 103
L++ VQ +P N + + V+ PE F + + +
Sbjct: 4 LRISLVQGSTRWHDPAGNRDYYGALLEPLAGQSDLVILPET---FTSGFSNEAIDKAEDM 60
Query: 104 KHEEQEWLRR 113
W+R
Sbjct: 61 DGPTVAWIRT 70
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of
alpha-helices, structural protein; 1.60A {Mus musculus}
SCOP: d.109.1.2
Length = 142
Score = 27.3 bits (60), Expect = 2.1
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 20/128 (15%)
Query: 85 PEVQEIFATSYKPDYRLIPKHEEQEWLRRTGKGEKKIQYIDPWVD-MPPLLKKVVAR--- 140
+V+EIFA + YRL+ E E L + + + PLL+
Sbjct: 11 EDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVL 70
Query: 141 -DLELENK----------TPEPNSFRMKVSFLETCNNLKREADENHPADIKIESFFGTP- 188
L+ +N +P+ + R K+ + T LK+E H IK E F
Sbjct: 71 FRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGH---IKDEVFGTVKE 127
Query: 189 -LSPELYE 195
+S Y+
Sbjct: 128 DVSLHGYK 135
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus
aureus subsp}
Length = 281
Score = 27.2 bits (61), Expect = 3.9
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 48 KILKVQPVQHDGNLENPHENYRKVMVYVASVFRG-----VLEPEVQEIFATSYKPDYRLI 102
+KVQ Q + +N ++ + VL PE+ + Y ++ +
Sbjct: 19 SHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVL-PEM---WNNGYDLEH--L 72
Query: 103 PKHEE------QEWLRR 113
+ + +++
Sbjct: 73 NEKADNNLGQSFSFIKH 89
>1rv9_A Conserved hypothetical protein NMB0706; alpha-beta-BETA-alpha
structure, structural genomics, PSI, P structure
initiative; 1.53A {Neisseria meningitidis} SCOP:
d.194.1.2
Length = 259
Score = 26.5 bits (59), Expect = 6.6
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 170 EADENHPADIKIESFFGTPLSPELYEIKPEVAEYFKQKKP 209
A + P ++ + G +S + +E+ +V + F P
Sbjct: 151 AAMKVPPVEMMA--YLGPAISADAFEVGQDVFDAFCTPMP 188
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 26.1 bits (58), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 109 EWLRRTGKGEKKIQY 123
EWL+ G GEKK+ Y
Sbjct: 203 EWLQDRGLGEKKVSY 217
>1xfj_A Conserved hypothetical protein; structural genomics, protein
structure initiative (PSI), HYP protein,
alpha-beta-BETA-alpha; 1.75A {Caulobacter vibrioides}
SCOP: d.194.1.2
Length = 261
Score = 26.5 bits (59), Expect = 7.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 190 SPELYEIKPEVAEYFKQKKP 209
P+ YE+ E F+ P
Sbjct: 168 GPKSYEVGLEFLHRFEADCP 187
>1z9t_A Hypothetical UPF0124 protein YFIH; putative laccase, structural
genomics, joint center for STRU genomics, JCSG, protein
structure initiative; HET: CIT; 1.54A {Escherichia coli}
PDB: 1xaf_A 1u05_A 1rw0_A
Length = 255
Score = 26.1 bits (58), Expect = 7.5
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 175 HPADIKIESFFGTPLSPELYEIKPEVAEYFKQKKP 209
+P +I + G + P +E+ EV E F
Sbjct: 157 NPENILA--WLGPAIGPRAFEVGGEVREAFMAVDA 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.426
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,423,181
Number of extensions: 201962
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 23
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)