BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15190
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 9 CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKN 50
C T+ GH V + ++PSGQ + S S+D+T R+ ++ N
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN 228
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 9 CVTV-GGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTC 67
CV+V H V+ + W PS + + S S D T +L+ ++ W A + H +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE--EEDDWVCCATLEGHESTVWS 199
Query: 68 LALI-STFVFASGADEKVVRAFR 89
LA S AS +D++ VR +R
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIWR 222
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQT 39
T+ GH V+ + W PSG + + S D++
Sbjct: 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTT 40
GH VR + W P G ++ S S D TT
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATT 85
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLH--------APFVGKNTWYEMARPQVHG 62
T+ GH V + P+G I+S S D+T ++ F G W M RP G
Sbjct: 187 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYD 64
T+ GH V+DI ++ SG+ + S S D T +L F G +E R +HG+D
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW-DFQG----FECIR-TMHGHD 192
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+T+ GH VR + + G+FI+S ++D+T R+
Sbjct: 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH VR + + P GQ I S S+D+T +L
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 124
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH VR + + P GQ I S S+D+T +L
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH VR + + P GQ I S S+D+T +L
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH VR + + P GQ I S S+D+T +L
Sbjct: 458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 493
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH VR + + P GQ I S S+D+T +L
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH V + + P GQ I S S+D+T +L
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 15 HFGPVRDIQWEPSGQFIISVSEDQTTRL 42
H VR + + P GQ I S S+D+T +L
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKL 42
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH V + + P GQ I S S+D+T +L
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH V + + P GQ I S S+D+T +L
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 83
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH V + + P GQ I S S+D+T +L
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH V + + P GQ I S S+D+T +L
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH V + + P GQ I S S+D+T +L
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH V + + P GQ I S S D+T +L
Sbjct: 540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
Q T+ GH V + + P Q I S S+D+T +L
Sbjct: 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 14/53 (26%)
Query: 9 CVTVGGHFGPVRDIQWEPSGQFIISVSED--------------QTTRLHAPFV 47
C T+ GH G V + W P +I+S S+D +LH P+V
Sbjct: 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV 111
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
T GH G + +++ P GQ + S+D T RL
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 12 VGGHFGPVRDIQWEPSGQFIISVSEDQTTRLH 43
V GHFGP+ + P G S ED RLH
Sbjct: 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRLH 342
>pdb|2JBM|A Chain A, Qprtase Structure From Human
pdb|2JBM|B Chain B, Qprtase Structure From Human
pdb|2JBM|C Chain C, Qprtase Structure From Human
pdb|2JBM|D Chain D, Qprtase Structure From Human
pdb|2JBM|E Chain E, Qprtase Structure From Human
pdb|2JBM|F Chain F, Qprtase Structure From Human
pdb|2JBM|G Chain G, Qprtase Structure From Human
pdb|2JBM|H Chain H, Qprtase Structure From Human
pdb|2JBM|I Chain I, Qprtase Structure From Human
pdb|2JBM|J Chain J, Qprtase Structure From Human
pdb|2JBM|K Chain K, Qprtase Structure From Human
pdb|2JBM|L Chain L, Qprtase Structure From Human
Length = 299
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 61 HGYDLTCLALIS-TFVFASGADEKVVRAFRTTQNFVDNIQRLC 102
H YDL L ++ V A+G EK VRA R +F ++ C
Sbjct: 162 HRYDLGGLVMVKDNHVVAAGGVEKAVRAARQAADFALKVEVEC 204
>pdb|3LAR|A Chain A, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|B Chain B, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|C Chain C, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|D Chain D, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|E Chain E, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|F Chain F, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
Length = 305
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 61 HGYDLTCLALIS-TFVFASGADEKVVRAFRTTQNFVDNIQRLC 102
H YDL L ++ V A+G EK VRA R +F ++ C
Sbjct: 160 HRYDLGGLVMVKDNHVVAAGGVEKAVRAARQAADFALKVEVEC 202
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein
Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein
Wdr5
Length = 308
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 52
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 56 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 94
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 104
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core
Complex Assembly And Regulation
Length = 317
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 61
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 65 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 103
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5
Module Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein
Wdr5
Length = 311
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 55
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 59 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 97
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 57
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 99
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 77 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 115
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 104
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 59
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 78
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 120
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 80
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 122
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ S S D+ ++ + GK
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 104
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH + D+ W ++S S+D+T ++ GK
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 101
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ GH V +++ P+G+++ + S D+ ++ + GK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK 59
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 6 QQPCVTV-GGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYD 64
+ C++V H V+ + W PS + S S D T R+ + + W +A H
Sbjct: 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY--DDDWECVAVLNGHEGT 199
Query: 65 LTCLALIST---FVFASGADEKVVRAFRTTQNFVDNIQR 100
+ T F SG+D+ VR ++ + D+ Q
Sbjct: 200 VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.5 bits (62), Expect = 0.86, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 11 TVGGHFGPVRDIQWEPS---GQFIISVSEDQT 39
T+ GH VRD+ W P+ ++ SVS+D+T
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 13 GGHFGPVRDIQWEPSGQFII-SVSEDQTTRL 42
GGH + D W P+ +II SVSED ++
Sbjct: 375 GGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 13 GGHFGPVRDIQWEPSGQFII-SVSEDQTTRL 42
GGH + D W P+ +II SVSED ++
Sbjct: 379 GGHTAKISDFSWNPNEPWIICSVSEDNIMQV 409
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 13 GGHFGPVRDIQWEPSGQFII-SVSEDQTTRL 42
GGH + D W P+ +II SVSED ++
Sbjct: 377 GGHTAKISDFSWNPNEPWIICSVSEDNIMQV 407
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 11 TVGGHFGPVRDIQWEPS---GQFIISVSEDQT 39
T+ GH VRD+ W P+ ++ SVS+D+T
Sbjct: 201 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 13 GGHFGPVRDIQWEPSGQFII-SVSEDQTTRL 42
GGH + D W P+ ++I SVSED ++
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIXQI 403
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 13 GGHFGPVRDIQWEPSGQFII-SVSEDQTTRL 42
GGH + D W P+ ++I SVSED ++
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQI 403
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 23/109 (21%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLH-------APFVGKNTWYEMAR--PQVHGYD 64
GH V + + IIS S D+T ++ A +G N W R P D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 65 LTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPTNI 113
+ S ++K+V+A+ Q ++ DF H +NI
Sbjct: 165 -------DSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNI 199
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 23/109 (21%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLH-------APFVGKNTWYEMAR--PQVHGYD 64
GH V + + IIS S D+T ++ A +G N W R P D
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 158
Query: 65 LTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPTNI 113
+ S ++K+V+A+ Q ++ DF H +NI
Sbjct: 159 -------DSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNI 193
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 23/109 (21%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLH-------APFVGKNTWYEMAR--PQVHGYD 64
GH V + + IIS S D+T ++ A +G N W R P D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 65 LTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPTNI 113
+ S ++K+V+A+ Q ++ DF H +NI
Sbjct: 165 -------DSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNI 199
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 23/109 (21%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLH-------APFVGKNTWYEMAR--PQVHGYD 64
GH V + + IIS S D+T ++ A +G N W R P D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 65 LTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPTNI 113
+ S ++K+V+A+ Q ++ DF H +NI
Sbjct: 165 -------DSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNI 199
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 23/109 (21%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLH-------APFVGKNTWYEMAR--PQVHGYD 64
GH V + + IIS S D+T ++ A +G N W R P D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 65 LTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPTNI 113
+ S ++K+V+A+ Q ++ DF H +NI
Sbjct: 165 -------DSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNI 199
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 13 GGHFGPVRDIQWEPSGQFII-SVSEDQTTRL 42
GGH + D W P+ ++I SVSED ++
Sbjct: 371 GGHTAKISDFSWNPNEPWVICSVSEDNIMQV 401
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 6 QQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+ P + GH GP+ +++ + + ++S S+D T R+
Sbjct: 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL----HAPFVG 48
T+ GH P+R + + P Q +++ S+D ++ HA G
Sbjct: 201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
GH V + + P G ++ S+DQT RL
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 15 HFGPVRDIQWEPSGQFIISVSEDQTTRL 42
H GPV D+ W G + + S D+T ++
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKM 112
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 11 TVGGHFGPVRDIQWEPS---GQFIISVSEDQT 39
T+ GH VRD+ W P+ ++ SVS+D+T
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
GH V + + P G ++ S+DQT R+
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
GH V + + P G ++ S+DQT R+
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 11 TVGGHFGPVRDIQWEPS---GQFIISVSEDQT 39
T+ GH VRD+ W P+ ++ SVS+D+T
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 8/118 (6%)
Query: 5 AQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYD 64
A+ T+ GH V ++W P G+ + S D + G+ W + H
Sbjct: 139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 198
Query: 65 LTCLALI----STFVFASGADEKVVRAFRTTQ----NFVDNIQRLCGLDFSQHPTNIL 114
+ +A + G ++ +R + + VD ++C + +S H ++
Sbjct: 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELI 256
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
H G V + W P G I S S D+T ++
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKI 265
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 26/72 (36%)
Query: 17 GPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTCLALISTFVF 76
GPV+DI W+ + I +V E + H T Q + F
Sbjct: 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI 163
Query: 77 ASGADEKVVRAF 88
SG+D+ V F
Sbjct: 164 ISGSDDNTVAIF 175
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 23/109 (21%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLH-------APFVGKNTWYEMAR--PQVHGYD 64
GH V + + IIS S D+T ++ A +G N W R P D
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 65 LTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPTNI 113
+ S ++K V+A+ Q ++ DF H +NI
Sbjct: 165 -------DSVTIISAGNDKXVKAWNLNQFQIE-------ADFIGHNSNI 199
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 12 VGGHFGPVRDIQWEPSGQFII-SVSEDQT 39
V GH PV DI W P +I S SED T
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCT 105
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 8 PCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTC 67
P + GH V D+ GQF +S S D T RL G T R H D+
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT----RRFVGHTKDVLS 133
Query: 68 LALIS-TFVFASGADEKVVRAFRT 90
+A S SG+ +K ++ + T
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNT 157
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 11 TVGGHFGPVRDIQWEPS---GQFIISVSEDQT 39
T+ GH VRD+ W P+ + SVS+D+T
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYXASVSQDRT 230
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 8 PCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTC 67
P + GH V D+ GQF +S S D T RL G T R H D+
Sbjct: 55 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT----RRFVGHTKDVLS 110
Query: 68 LALIS-TFVFASGADEKVVRAFRT 90
+A S SG+ +K ++ + T
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLWNT 134
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 11 TVGGHFGPVRDIQWE-PSGQFIIS 33
T GH+ PV IQ E P+G FI S
Sbjct: 14 TTNGHYAPVTYIQVEAPTGTFIAS 37
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 5 AQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTW 52
A+ T+ GH V ++W P G+ + S D + G+ W
Sbjct: 230 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 277
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease
From Staphylococcus Aureus
Length = 268
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 11 TVGGHFGPVRDIQWE-PSGQFIIS 33
T GH+ PV IQ E P+G FI S
Sbjct: 14 TTNGHYAPVTYIQVEAPTGTFIAS 37
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 5 AQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTW 52
A+ T+ GH V ++W P G+ + S D + G+ W
Sbjct: 219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 266
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 12 VGGHFGPVRDIQWEPSGQFII-SVSEDQT 39
V GH PV DI W P +I S SED T
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCT 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,605,268
Number of Sequences: 62578
Number of extensions: 128969
Number of successful extensions: 503
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 156
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)