BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15190
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7K4B3|ELP2_DROME Probable elongator complex protein 2 OS=Drosophila melanogaster
GN=Elp2 PE=1 SV=1
Length = 794
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
Query: 8 PCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFV--GKN-TWYEMARPQVHGYD 64
P V VGGH+G VRD+ WE SG ++++ S DQTTRLHAP++ G N TW+E+ARPQ+HGYD
Sbjct: 378 PGVIVGGHYGEVRDLAWEHSGAYLMTASADQTTRLHAPWLQDGANPTWHELARPQIHGYD 437
Query: 65 LTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLD 105
+ LAL+S + FASGA+EK+VR F+ NF++N + + G++
Sbjct: 438 MQALALLSRYKFASGAEEKIVRTFQAPANFIENFRHISGIE 478
>sp|Q5EBD9|ELP2_XENTR Elongator complex protein 2 OS=Xenopus tropicalis GN=elp2 PE=2 SV=1
Length = 824
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 4/98 (4%)
Query: 8 PCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKN----TWYEMARPQVHGY 63
P V + GHF V+D++W+P GQF+I+VS DQTTRL P+ K TW+E+ARPQ+HGY
Sbjct: 377 PMVIISGHFDSVQDMRWDPDGQFVITVSADQTTRLFGPWKKKGQSHVTWHEIARPQIHGY 436
Query: 64 DLTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRL 101
D+ CLA+I F F SGADEKV+R F +NF++N +
Sbjct: 437 DMQCLAMIGRFQFVSGADEKVLRVFAAPRNFIENFSNI 474
>sp|Q05AM5|ELP2_DANRE Elongator complex protein 2 OS=Danio rerio GN=elp2 PE=2 SV=1
Length = 821
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 71/106 (66%), Gaps = 4/106 (3%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKN----TWYEMARPQVHG 62
+P V + GHF V+D+ W+P G+FII+V DQTTRL P+ K TW+E++RPQ+HG
Sbjct: 367 RPSVVISGHFNAVQDMSWDPEGEFIITVGSDQTTRLFTPWTRKGSSQITWHEISRPQIHG 426
Query: 63 YDLTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQ 108
YD+ CL ++ F F SGADEKV+R F+ +NFV+N + G +
Sbjct: 427 YDMQCLTMVGRFQFVSGADEKVLRVFKAPRNFVENFAHISGTSLEK 472
>sp|Q6IA86|ELP2_HUMAN Elongator complex protein 2 OS=Homo sapiens GN=ELP2 PE=1 SV=2
Length = 826
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 72/100 (72%), Gaps = 4/100 (4%)
Query: 8 PCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKN----TWYEMARPQVHGY 63
P + + GHF V+D+ W+P G+FII+V DQTTRL AP+ K+ TW+E+ARPQ+HGY
Sbjct: 380 PEIVISGHFDGVQDLVWDPEGEFIITVGTDQTTRLFAPWKRKDQSQVTWHEIARPQIHGY 439
Query: 64 DLTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCG 103
DL CLA+I+ F F SGADEKV+R F +NFV+N + G
Sbjct: 440 DLKCLAMINRFQFVSGADEKVLRVFSAPRNFVENFCAITG 479
>sp|Q496Z0|ELP2_RAT Elongator complex protein 2 OS=Rattus norvegicus GN=Elp2 PE=2 SV=1
Length = 821
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 71/98 (72%), Gaps = 6/98 (6%)
Query: 4 WAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKN----TWYEMARPQ 59
WA P + + GHF V+D+ W+P G+FII+ S DQTTRL AP+ KN TW+E+ARPQ
Sbjct: 377 WA--PEIVISGHFDGVQDLIWDPEGEFIITTSTDQTTRLFAPWKKKNQSQVTWHEIARPQ 434
Query: 60 VHGYDLTCLALISTFVFASGADEKVVRAFRTTQNFVDN 97
+HGY+L CLA+I F F SGADEKV+R F +NFV+N
Sbjct: 435 IHGYNLKCLAMIDRFQFVSGADEKVLRVFSAPRNFVEN 472
>sp|Q91WG4|ELP2_MOUSE Elongator complex protein 2 OS=Mus musculus GN=Elp2 PE=1 SV=1
Length = 831
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 71/101 (70%), Gaps = 9/101 (8%)
Query: 4 WAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKN-------TWYEMA 56
WA P + + GHF V+D+ W+P G+FII+ S DQTTRL AP+ K+ TW+E+A
Sbjct: 377 WA--PEIVISGHFDGVQDLMWDPEGEFIITTSTDQTTRLFAPWKKKDQKDRSQVTWHEIA 434
Query: 57 RPQVHGYDLTCLALISTFVFASGADEKVVRAFRTTQNFVDN 97
RPQ+HGY++ CLA+I F F SGADEKV+R F +NFV+N
Sbjct: 435 RPQIHGYNIKCLAMIDRFQFVSGADEKVLRVFSAPRNFVEN 475
>sp|O94533|ELP2_SCHPO Elongator complex protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=elp2 PE=3 SV=1
Length = 760
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 4 WAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGY 63
W Q P ++ GH V+ + W+P G+F +S DQTTRL A F N W+EMARPQ+HGY
Sbjct: 360 WLQLP--SISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLFARFKKDNAWHEMARPQIHGY 417
Query: 64 DLTCLALISTFV-FASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQH 109
DLT ++ + + + F S ADEKV R F+ + V + RLC + +
Sbjct: 418 DLTSISCMPSRIGFLSCADEKVSRVFKFPKTIVRLLYRLCDTNIGEE 464
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 4 WAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHG- 62
W QQ + GH V I++ P ++I+S D+ LH + A + H
Sbjct: 568 WNQQQ--VLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAENLLDYNNFASIKAHSR 625
Query: 63 --YDLTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPTNILF 115
+D + + FA+ + +K V+ ++ N I + L FS T + F
Sbjct: 626 IIWDASWAPKEMGYFFATASRDKFVKFWKINDN--KKICDVAALQFSDAVTAVDF 678
>sp|Q86H45|ELP2_DICDI Probable elongator complex protein 2 OS=Dictyostelium discoideum
GN=elp2 PE=3 SV=1
Length = 901
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 20/124 (16%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKN--------------TW 52
+P + V GHFGPV+D+ W P + IS S D+T RL + + N +W
Sbjct: 428 EPQIVVSGHFGPVQDLMWSPDYSYFISCSTDRTLRLFSEWKRNNNNNNLENNKEQQIISW 487
Query: 53 YEMARPQVHGYDLTCLALIS--TFVFASGADEKVVRAFRTTQNFVDNIQRLCGL----DF 106
E+ARPQ+HGYDL C I+ T V SGA+EK++RAF +QNFVD + + + D
Sbjct: 488 NEIARPQIHGYDLECFTFINKKTHVIVSGAEEKIMRAFVGSQNFVDTLLNISKVQPVNDG 547
Query: 107 SQHP 110
+Q P
Sbjct: 548 TQRP 551
>sp|P42935|ELP2_YEAST Elongator complex protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ELP2 PE=1 SV=1
Length = 788
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 12 VGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFV----GKN----TWYEMARPQVHGY 63
+ G V DI W PSG+++++ S DQTTRL AP++ G+ TW+E +RPQ+HGY
Sbjct: 381 ISGATKDVTDIAWSPSGEYLLATSLDQTTRLFAPWIYDASGRKREIATWHEFSRPQIHGY 440
Query: 64 DLTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQ 108
D+ C+ ++ F SG DEK++R+F + +Q+ G+ F +
Sbjct: 441 DMICVETVTDTRFVSGGDEKILRSFDLPKGVAGMLQKFVGIQFEE 485
>sp|F4I1S7|ELP2_ARATH Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1
SV=1
Length = 838
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 10/110 (9%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNT-------WYEMARPQVHGYDLT 66
GHF V D+ W +G++++SVS+DQTTR+ + + W+E+ARPQVHG+D+
Sbjct: 411 GHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKNDEGNEAEDEHWHELARPQVHGHDIN 470
Query: 67 CLALI---STFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPTNI 113
C+A++ F SGA+EKVVR F +F+ + C P ++
Sbjct: 471 CVAMVQGKGNHRFVSGAEEKVVRVFEAPLSFLKTLNHTCAGGEGSFPEDL 520
>sp|B7QKS1|CIAO1_IXOSC Probable cytosolic iron-sulfur protein assembly protein OS=Ixodes
scapularis GN=ISCW023049 PE=3 SV=1
Length = 315
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQ-VHGYDL 65
+ C T+ GH V+ W PSG+F+ + S D+T + VG++ +E A Q H D
Sbjct: 93 ESCATLEGHENEVKACGWSPSGRFLATCSRDKTVWIWE--VGEDEEFECASVQTCHSQD- 149
Query: 66 TCLALISTFVFASGADEKVVRAFRTTQNF----VDNIQRLCGLDFSQHPTNI 113
+ ++ DE ++ T F VD+ Q C LD +H + +
Sbjct: 150 -----VKKVLWHPDRDELASASYDNTIRFFCEEVDDWQCYCTLD--KHASTV 194
>sp|Q6DRF9|WDR55_DANRE WD repeat-containing protein 55 OS=Danio rerio GN=wdr55 PE=2 SV=2
Length = 387
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 13 GGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTCLALIS 72
G H R + + GQ + SVS+D+ + GK E P+ H + + LI
Sbjct: 78 GHHLKSCRKVLFSSDGQKLFSVSKDKAIHIMDVEAGK---LETRIPKAHKVPINAMLLID 134
Query: 73 TFVFASGADEKVVRAF--RTTQNFVD 96
+FA+G DE ++ + R +F+D
Sbjct: 135 ENIFATGDDEGTLKVWDMRKGTSFMD 160
>sp|Q5E959|STRAP_BOVIN Serine-threonine kinase receptor-associated protein OS=Bos taurus
GN=STRAP PE=2 SV=1
Length = 350
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK--NTWY---------EMARPQVH 61
GHFGP+ +++ P G+ S SED T RL VGK W E+A+P+++
Sbjct: 263 GHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKIN 321
>sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-associated protein OS=Homo sapiens
GN=STRAP PE=1 SV=1
Length = 350
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK--NTWY---------EMARPQV 60
GHFGP+ +++ P G+ S SED T RL VGK W E+A+P++
Sbjct: 263 GHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKI 320
>sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-associated protein OS=Mus musculus
GN=Strap PE=1 SV=2
Length = 350
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK--NTWY---------EMARPQV 60
GHFGP+ +++ P G+ S SED T RL VGK W E+A+P++
Sbjct: 263 GHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKI 320
>sp|Q5XIG8|STRAP_RAT Serine-threonine kinase receptor-associated protein OS=Rattus
norvegicus GN=Strap PE=1 SV=1
Length = 350
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK--NTWY---------EMARPQV 60
GHFGP+ +++ P G+ S SED T RL VGK W E+A+P++
Sbjct: 263 GHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKI 320
>sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b
PE=2 SV=1
Length = 470
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 1 MLVWAQQP---CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMAR 57
+++W +P GH V +Q+ PSG + S S+D+T RL AP N E +
Sbjct: 42 VMIWNFKPQSRAYKYPGHKEAVTCVQFSPSGHLVASSSKDRTVRLWAP----NIKGESSV 97
Query: 58 PQVHGYDLTCLALIST-FVFASGADEKVVRAF 88
+ H + C+ S F + +D+K ++A+
Sbjct: 98 LKAHTAVVRCVNFSSDGHTFITASDDKSIKAW 129
>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila
melanogaster GN=Taf5 PE=1 SV=1
Length = 704
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 27/97 (27%)
Query: 1 MLVWAQQPCV-TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAP--------FVGKNT 51
+L W+ CV T GH PV D+++ P G + +S S D+T RL A FVG
Sbjct: 479 LLTWS---CVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVG--- 532
Query: 52 WYEMARPQVHGYDLTCLAL--ISTFVFASGADEKVVR 86
H D+ C+ S +V A+G+ ++ VR
Sbjct: 533 ---------HLSDVDCVQFHPNSNYV-ATGSSDRTVR 559
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTCLALIS- 72
GH GPV + P ++S SED T RL + TW + + H Y + +
Sbjct: 448 GHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLL----TWSCVVTYRGHVYPVWDVRFAPH 503
Query: 73 TFVFASGADEKVVRAFRTTQN 93
+ F S + +K R + T N
Sbjct: 504 GYYFVSCSYDKTARLWATDSN 524
>sp|Q5ZL33|STRAP_CHICK Serine-threonine kinase receptor-associated protein OS=Gallus
gallus GN=STRAP PE=2 SV=2
Length = 350
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
GHFGP+ +++ P G+ S SED T RL VGK
Sbjct: 263 GHFGPIHCVRFSPDGELYASGSEDGTLRLWQTTVGK 298
>sp|Q6ZD63|FAS2_ORYSJ Chromatin assembly factor 1 subunit FAS2 homolog OS=Oryza sativa
subsp. japonica GN=FAS2 PE=2 SV=1
Length = 505
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHA 44
GH V+ + W+P GQ+I S+S D+T R++A
Sbjct: 152 GHLHYVQGVAWDPLGQYIASLSSDRTCRIYA 182
>sp|B6H7A3|CIAO1_PENCW Probable cytosolic iron-sulfur protein assembly protein 1
OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075
/ Wisconsin 54-1255) GN=cia1 PE=3 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 9 CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPF-VGKNTWYEMARPQVHGYDLTC 67
V + GH V+ + W SG + + S D++ + G N + +A Q HG D+ C
Sbjct: 143 AVLLDGHDSEVKSVSWSASGMLLATCSRDKSIWIWEDLDDGDNNFETVAVMQEHGGDVKC 202
Query: 68 LAL-ISTFVFASGADEKVVRAFRTTQNFVDNIQRLC 102
++ S ASG+ + +R +R ++ D Q C
Sbjct: 203 VSWHPSEECLASGSYDDTIRLWR--EDLDDWGQVAC 236
>sp|B8PD53|LIS12_POSPM Nuclear distribution protein PAC1-2 OS=Postia placenta (strain ATCC
44394 / Madison 698-R) GN=PAC1-2 PE=3 SV=1
Length = 427
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 3 VWAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHG 62
V + Q TV GH +R + + PSG+ ++S S+D+T R+ G+ M + H
Sbjct: 328 VHSGQELRTVSGHNDWIRGLVFHPSGKHLLSASDDKTIRVWELSTGRC----MXVVEAHS 383
Query: 63 YDLTCLA 69
+ +TCLA
Sbjct: 384 HFITCLA 390
>sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3
Length = 515
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 6 QQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDL 65
Q P T+ GH+ V + W P G+ I + S D T RL P G+ + + H +
Sbjct: 176 QTPMHTLKGHYNWVLCVSWSPDGEVIATGSMDNTIRLWDPKSGQCLGDAL---RGHSKWI 232
Query: 66 TCLALISTFVFASGADEKVVRAFRT-TQNFVDNIQRLCGLDFSQHPTNI 113
T L+ + G+ ++ + + T D + R+C S H ++
Sbjct: 233 TSLSWEPIHLVKPGSKPRLASSSKDGTIKIWDTVSRVCQYTMSGHTNSV 281
>sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae
GN=BRAFLDRAFT_59218 PE=3 SV=1
Length = 406
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+T+ GH VR + W P G++IIS S+D+T R+
Sbjct: 328 MTLVGHDNWVRGVVWHPGGKYIISASDDKTIRV 360
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLH--------APFVGKNTWYEMAR 57
T+ GH V + + P+G F+IS S D+T ++ F G W R
Sbjct: 185 TMHGHDHNVSSVHFMPNGDFLISASRDKTIKMWELATGYCVKTFTGHREWVRTVR 239
>sp|Q4V7Z1|POC1B_XENLA POC1 centriolar protein homolog B OS=Xenopus laevis GN=poc1b PE=1
SV=1
Length = 468
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 1 MLVWAQQP---CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMAR 57
+++W +P GH V +Q+ PSG + S S+D+T RL AP N E
Sbjct: 42 VMIWNFKPQSRAYKYPGHKEAVTCVQFSPSGHLVASSSKDRTVRLWAP----NIKGESTV 97
Query: 58 PQVHGYDLTCLALIS---TFVFASGADEKVVRAF 88
+ H + C+ S TF+ AS D+K ++A+
Sbjct: 98 LKAHTAVVRCVNFSSDGQTFITAS--DDKSIKAW 129
>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG
PE=1 SV=2
Length = 931
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSED 37
++ GH P+ + W+PSG F+ SVSED
Sbjct: 813 SLQGHANPINSVCWDPSGDFLASVSED 839
>sp|Q8NBT0|POC1A_HUMAN POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1
SV=2
Length = 407
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 40/136 (29%)
Query: 3 VWA---QQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQ 59
VWA Q+ ++ H VR ++ P G+ I+S S+D+T +L W + +R
Sbjct: 129 VWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKL---------WDKSSREC 179
Query: 60 VHGY--------------DLTCLALISTFVFASGADEKV----VRAFRTTQNFVDNIQRL 101
VH Y TC+A A+G D V VR R Q++ + +
Sbjct: 180 VHSYCEHGGFVTYVDFHPSGTCIA-------AAGMDNTVKVWDVRTHRLLQHYQLHSAAV 232
Query: 102 CGLDFSQHPT-NILFT 116
GL F HP+ N L T
Sbjct: 233 NGLSF--HPSGNYLIT 246
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 1 MLVWAQQP---CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFV-GKNTWYEMA 56
++VW +P GH V + + PSG + S S D+T R+ P V G++T +
Sbjct: 43 LMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAH 102
Query: 57 RPQVHGYDLTCLALISTFVFASGADEKVVRAFRT 90
V +FV AS D+K V+ + T
Sbjct: 103 TATVRSVHFCSDG--QSFVTAS--DDKTVKVWAT 132
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 15 HFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYD--LTCLALIS 72
H V + + PSG ++I+ S D T ++ G+ + +HG+ T +A
Sbjct: 228 HSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLY------TLHGHQGPATTVAFSR 281
Query: 73 T-FVFASGADEKVVRAFRTTQNFVDN 97
T FASG ++ V +++ + VD+
Sbjct: 282 TGEYFASGGSDEQVMVWKSNFDIVDH 307
>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf73 PE=1 SV=1
Length = 642
Score = 36.2 bits (82), Expect = 0.070, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL----HAP----FVGKNTWYEMARPQVH 61
V GH P+ D+Q+ P G + + S DQT RL HA FVG H
Sbjct: 439 VKYAGHNAPIWDVQFSPFGYYFATASHDQTARLWDVEHAAPLRVFVG------------H 486
Query: 62 GYDLTCLALISTFVF-ASGADEKVVR 86
D+ C++ + A+G+ + R
Sbjct: 487 QNDVDCVSFHPNAAYLATGSSDHTTR 512
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
GH PV + P +FI+S SED TRL
Sbjct: 401 GHTRPVFGVSISPQKEFILSCSEDGFTRL 429
>sp|B8P4B0|LIS11_POSPM Nuclear distribution protein PAC1-1 OS=Postia placenta (strain ATCC
44394 / Madison 698-R) GN=PAC1-1 PE=3 SV=1
Length = 438
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 3 VWAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHG 62
V + Q T+ GH +R + + PSG+ ++S S+D+T R+ G+ M + H
Sbjct: 328 VHSGQELRTLSGHNDWIRGLVFHPSGKHLLSASDDKTIRVWELSTGRC----MKVVEAHS 383
Query: 63 YDLTCLA 69
+ +TCLA
Sbjct: 384 HFITCLA 390
>sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3
SV=1
Length = 417
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL--------HAPFVGKNTWYEMARPQVHG 62
T+ GH V + + PSG F++S S D+T ++ F+G W RP G
Sbjct: 201 TLTGHDHNVSSVAFLPSGDFLVSASRDKTIKMWEVSTGYCTKTFIGHTEWIRSVRPSPEG 260
Query: 63 YDLTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPTNI 113
L + T S + R ++ V+ I ++ HP N+
Sbjct: 261 NLLASCSNDHTIRIWSVESRECQVVLRGHEHVVECIA------WASHPQNL 305
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
T+ GH V+D+ ++PSG+F+ S S D +L
Sbjct: 159 TLKGHTDSVQDVAFDPSGKFLASCSADMQVKL 190
>sp|B4P7Q3|CIAO1_DROYA Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Drosophila yakuba GN=Ciao1 PE=3 SV=1
Length = 335
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
GH +R+IQW P GQ++ S S D TT + + G+
Sbjct: 57 GHKRTIREIQWSPCGQYLASASFDATTAIWSKSSGE 92
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTW 52
T+ GH G + + W P G S ED+ R+ + + NTW
Sbjct: 9 TLQGHKGRIWGVAWHPKGNVFASCGEDKAIRIWS--LTGNTW 48
>sp|B3MJV8|WDR12_DROAN Ribosome biogenesis protein WDR12 homolog OS=Drosophila ananassae
GN=GF14067 PE=3 SV=1
Length = 419
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 10 VTVGGHFGPVRDIQW----EPSGQFIISVSEDQTTRLHAPFVGKNT 51
+T+ GH P++ + W E SG+F +S S+DQT L VG NT
Sbjct: 138 LTISGHTAPIKAVDWISLDEESGRF-VSSSQDQTAMLWQWNVGSNT 182
>sp|O17468|HIRA_DROME Protein HIRA homolog OS=Drosophila melanogaster GN=Hira PE=1 SV=2
Length = 1047
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 1 MLVWAQQP----CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+++W Q T+ GH G V+ + W+P G+F+ S S+D++ ++
Sbjct: 153 VIIWDAQAFPHSVATLKGHTGLVKGVSWDPLGRFLASQSDDRSIKI 198
>sp|Q6NZH4|LIS1_XENTR Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+T+ GH VR +Q+ P G+FI+S ++D+T R+
Sbjct: 332 MTLVGHDNWVRGVQFHPGGKFILSCADDKTIRI 364
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLH--------APFVGKNTWYEMARPQVHG 62
T+ GH V + P+G I+S S D+T ++ F G W M RP G
Sbjct: 187 TMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYD 64
T+ GH V+DI ++ SG+ + S S D T +L F G +E R +HG+D
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW-DFQG----FECIR-TMHGHD 192
>sp|A7S338|LIS1_NEMVE Lissencephaly-1 homolog OS=Nematostella vectensis GN=v1g242515 PE=3
SV=1
Length = 409
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
VT+ GH VR + + P G+FI+S S+D+T R+
Sbjct: 331 VTLVGHDNWVRAVMFHPGGKFIVSCSDDKTLRI 363
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLH--------APFVGKNTWYEMARPQVHG 62
T+ GH V I + PSG ++S S D+T ++ F G W RP G
Sbjct: 185 TLHGHDHNVSSISFLPSGDHLVSASRDKTIKMWEIATGYCVKTFQGHGEWVRRVRPNADG 244
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYD 64
T+ GH V+D+ ++ +G+F+ S S D T +L F G +E R +HG+D
Sbjct: 143 TLKGHTDAVQDLAFDHTGKFLASSSADMTIKLW-DFQG----FECIR-TLHGHD 190
>sp|Q90ZL4|LIS1_XENLA Lissencephaly-1 homolog OS=Xenopus laevis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+T+ GH VR +Q+ P G+FI+S ++D+T R+
Sbjct: 332 MTLVGHDNWVRGVQFHPGGKFILSCADDKTIRI 364
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLH--------APFVGKNTWYEMARPQVHG 62
T+ GH V + P+G I+S S D+T ++ F G W M RP G
Sbjct: 187 TMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYD 64
T+ GH V+DI ++ SG+ + S S D T +L F G +E R +HG+D
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW-DFQG----FECLR-TMHGHD 192
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 4 WAQQPCV-TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
W Q C+ T+ GH V DI + P G+ + S S DQT R+ GK
Sbjct: 1133 WQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGK 1179
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK--NTWY---EMARPQVHGYDL 65
T+ GH V + + P GQ + VS DQ+ RL G+ WY + A P D
Sbjct: 889 TLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDR 948
Query: 66 TCLALISTFVFASGADEKVVR 86
+ ASG+++K V+
Sbjct: 949 Q--------ILASGSNDKTVK 961
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
T+ H + + W P GQ + S S DQ+ RL G+
Sbjct: 1057 TLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGR 1095
>sp|Q9C1X1|PWP2_SCHPO Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC713.04c PE=1 SV=1
Length = 854
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHA 44
GHF + I W +F IS S+D T RLH+
Sbjct: 144 GHFDDIVSISWSADSRFFISTSKDLTARLHS 174
>sp|A8WVX8|EIF3I_CAEBR Eukaryotic translation initiation factor 3 subunit I
OS=Caenorhabditis briggsae GN=eif-3.I PE=3 SV=1
Length = 327
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLH 43
GHFGP+ + W PSG I + ED R+
Sbjct: 285 GHFGPINTMAWHPSGSIIATGGEDGYVRIQ 314
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 15 HFGPVRDIQWEPSGQFIISVSEDQTTR-LHAPFVGKNTWYEMARP 58
H ++D+Q P G F+IS S D+T L + K Y+ RP
Sbjct: 189 HRYSIQDLQLSPRGDFLISASRDKTAALLDVNDLKKLKQYKSERP 233
>sp|Q54MP8|Y5837_DICDI Bromodomain and WD repeat-containing DDB_G0285837 OS=Dictyostelium
discoideum GN=DDB_G0285837 PE=4 SV=1
Length = 2200
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLT--C 67
+ V GH P +Q++ SG+ + S+D ++ + + G+ +A + H D+T C
Sbjct: 348 LIVYGHKAPTYCLQFDKSGRLYFTGSDDHLVKVWSTYSGR----LIATLRGHLGDITDMC 403
Query: 68 LALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQHPT 111
+ ++ + A+ +++ V+R + N D+I L G D S + T
Sbjct: 404 TSFDNS-LLATASNDNVIRIWNLNSNQYDSIASLTGHDPSVNNT 446
>sp|C7Z6H2|LIS1_NECH7 Nuclear distribution protein PAC1 OS=Nectria haematococca (strain
77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI) GN=PAC1 PE=3
SV=1
Length = 448
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTR 41
T+ GH VR + + PSG+F++SVS+D+T R
Sbjct: 342 TLIGHDNWVRSLVFHPSGKFLLSVSDDKTIR 372
>sp|B6GZD3|LIS12_PENCW Nuclear distribution protein nudF 2 OS=Penicillium chrysogenum
(strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255)
GN=nudF-2 PE=3 SV=1
Length = 464
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTR 41
+T+ GH VR I + P G++++SVS+D+T R
Sbjct: 340 MTLTGHASWVRAIAFHPGGKYLLSVSDDKTMR 371
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
T+ H G VRDI GQF++S +D T RL
Sbjct: 238 TIEDHTGWVRDISPSFDGQFLLSTGDDMTVRL 269
>sp|C5FWH1|LIS1_ARTOC Nuclear distribution protein PAC1 OS=Arthroderma otae (strain ATCC
MYA-4605 / CBS 113480) GN=PAC1 PE=3 SV=1
Length = 461
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 9 CV-TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
CV T+ GH VRD+ P G+F++S +D T RL
Sbjct: 245 CVRTLQGHTAWVRDVYPSPDGRFLLSTGDDSTARL 279
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTR 41
+T+ GH +R + + P G+++ SVS+D+T R
Sbjct: 353 MTLVGHDNWIRALAFHPGGKYLFSVSDDRTLR 384
>sp|Q5M7T1|CIAO1_RAT Probable cytosolic iron-sulfur protein assembly protein CIAO1
OS=Rattus norvegicus GN=Ciao1 PE=2 SV=1
Length = 339
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 9 CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKN 50
C T+ GH V I ++PSGQ + S S+D+T R+ ++ N
Sbjct: 187 CATLEGHESTVWSIAFDPSGQRLASCSDDRTVRIWRQYLPGN 228
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 9 CVTV-GGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTC 67
CV+V H V+ + W PS + + S S D T +L+ + W A + H +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYQE--EGDDWVCCATLEGHESTVWS 199
Query: 68 LALI-STFVFASGADEKVVRAFR 89
+A S AS +D++ VR +R
Sbjct: 200 IAFDPSGQRLASCSDDRTVRIWR 222
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQT 39
T+ GH V+ + W PSG + + S D++
Sbjct: 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
>sp|Q9UT85|YIPC_SCHPO Uncharacterized WD repeat-containing protein C343.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC343.04c PE=4 SV=1
Length = 507
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTC 67
GH V I+W P ++++S S D++ L F G E R HG+ ++C
Sbjct: 253 GHIDTVAYIRWSPDDRYLLSCSCDKSVILWDAFTG-----EKLRDYKHGFSVSC 301
>sp|Q6CG48|LIS1_YARLI Nuclear distribution protein PAC1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=PAC1 PE=3 SV=1
Length = 437
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 3 VWAQQ--PCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQV 60
VW+ + P + + GH VR + P+G++++SVS+D+T R G +
Sbjct: 345 VWSSRGDPLLILRGHDNWVRGVVLHPAGRYLVSVSDDKTMRCWDLEQGGRC---IRVVDA 401
Query: 61 HGYDLTCLA 69
HG+ +TC+A
Sbjct: 402 HGHFVTCVA 410
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYD---LTC 67
T+ GH + +++ SG +IS S D+T R+ + G VHG+ +C
Sbjct: 218 TLTGHDHTISAVKFTASGNHVISASRDKTVRVWSVQSG------YCVRTVHGHTDWVKSC 271
Query: 68 LALISTFVFASGAD 81
AL F+F++G D
Sbjct: 272 AALNEEFIFSAGID 285
>sp|Q9VU65|POC1_DROME POC1 centriolar protein homolog OS=Drosophila melanogaster GN=Poc1
PE=2 SV=1
Length = 391
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 15 HFGPVRDIQWEPSGQFIISVSEDQTTRL 42
H PV D+ + PSG F++S S+D+T R+
Sbjct: 227 HSAPVNDVAFHPSGHFLLSGSDDRTIRI 254
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 9 CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAP 45
C+ H PV + W P G + S D+T ++ P
Sbjct: 53 CIRFASHSAPVNGVAWSPKGNLVASAGHDRTVKIWEP 89
>sp|Q12417|PRP46_YEAST Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP46 PE=1 SV=1
Length = 451
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 8 PCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGK 49
P +T+ GH GP+ +Q P ++S S D T RL GK
Sbjct: 258 PVITLVGHKGPINQVQCTPVDPQVVSSSTDATVRLWDVVAGK 299
>sp|Q99KN2|CIAO1_MOUSE Probable cytosolic iron-sulfur protein assembly protein CIAO1
OS=Mus musculus GN=Ciao1 PE=2 SV=1
Length = 339
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 9 CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKN 50
C T+ GH V I ++PSGQ + S S+D+T R+ ++ N
Sbjct: 187 CATLEGHESTVWSIAFDPSGQRLASCSDDRTVRIWRQYLPGN 228
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 9 CVTV-GGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTC 67
CV+V H V+ + W PS + + S S D T +L+ + W A + H +
Sbjct: 142 CVSVLSSHTQDVKHVVWHPSQELLASASYDDTVKLYQE--EGDDWVCCATLEGHESTVWS 199
Query: 68 LALI-STFVFASGADEKVVRAFR 89
+A S AS +D++ VR +R
Sbjct: 200 IAFDPSGQRLASCSDDRTVRIWR 222
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQT 39
T+ GH V+ + W PSG + + S D++
Sbjct: 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
>sp|B3MEY6|LIS1_DROAN Lissencephaly-1 homolog OS=Drosophila ananassae GN=Lis-1 PE=3 SV=1
Length = 411
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 27/110 (24%)
Query: 9 CV-TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLH--------APFVGKNTWYEMARPQ 59
CV T+ GH V + + P+G +++S S D+T ++ + G W M R
Sbjct: 185 CVKTMHGHDHNVSSVAFVPAGDYVLSASRDRTVKMWEVATGYCVKTYTGHREWVRMVRVH 244
Query: 60 VHGYDLTCLALISTFVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQH 109
+ G +FA+ +++ +R + T R C ++ H
Sbjct: 245 IEGS-----------IFATCSNDHTIRVWLTN-------SRDCKVELRDH 276
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
T+ GH VR + + P+G++++S S+D+T R+
Sbjct: 334 TLNGHDNWVRGLAFHPAGKYLVSASDDKTIRV 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,379,459
Number of Sequences: 539616
Number of extensions: 1565533
Number of successful extensions: 6199
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 4964
Number of HSP's gapped (non-prelim): 1285
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)