RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15190
(117 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 38.6 bits (88), Expect = 5e-05
Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 4/112 (3%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLT 66
T GH + I + P+G + S+D T RL + + G
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 67 CLALISTFVFASGADEKV----VRAFRTTQNFVDNIQRLCGLDFSQHPTNIL 114
+ + A D + R+ L + +
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Score = 37.0 bits (84), Expect = 2e-04
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+ GH V + G + + S D ++
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 34.3 bits (77), Expect = 0.002
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTW 52
T+ GH + + W + ++S S+D + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH 91
Score = 32.4 bits (72), Expect = 0.008
Identities = 8/84 (9%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 4 WAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGY 63
+ + + + + SG+ +++ +D + H
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD----RAGVLAGHDN 313
Query: 64 DLTCLALIST-FVFASGADEKVVR 86
++CL + A+G+ + ++
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLK 337
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 37.4 bits (85), Expect = 1e-04
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLT 66
+T+ GH VR + + G+FI+S ++D+T R+ M H + +T
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY----KNKRCMKTLNAHEHFVT 293
Query: 67 CLALISTF-VFASGADEKVVR 86
L T +G+ ++ V+
Sbjct: 294 SLDFHKTAPYVVTGSVDQTVK 314
Score = 35.5 bits (80), Expect = 7e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
GH PV + + P ++S SED T ++
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKV 43
Score = 35.5 bits (80), Expect = 7e-04
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+ T+ H V + + + ++++ S DQT ++
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315
Score = 26.6 bits (57), Expect = 0.80
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 1 MLVWAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQV 60
V T GH VR ++ G I S S DQT R+ T A +
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV----ATKECKAELRE 183
Query: 61 HGYDLTCLA 69
H + + C++
Sbjct: 184 HRHVVECIS 192
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 35.7 bits (80), Expect = 6e-04
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 3/96 (3%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTCLALIST 73
GH + + G+ + S + G + P VH +T + S
Sbjct: 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR---VFPDVHATMITGIKTTSK 66
Query: 74 FVFASGADEKVVRAFRTTQNFVDNIQRLCGLDFSQH 109
+ + + ++ + VD+ + + SQ
Sbjct: 67 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 102
Score = 25.7 bits (54), Expect = 1.4
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 4 WAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+ P + G H + + I+S +D +
Sbjct: 256 PSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 35.6 bits (80), Expect = 6e-04
Identities = 7/57 (12%), Positives = 14/57 (24%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTC 67
+ H G V + W P I++ D+ + +
Sbjct: 46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102
Score = 31.0 bits (68), Expect = 0.026
Identities = 7/70 (10%), Positives = 19/70 (27%), Gaps = 3/70 (4%)
Query: 18 PVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTCLALIST-FVF 76
P+ W I + ++ N W ++ + H +T +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYE--KSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66
Query: 77 ASGADEKVVR 86
+ ++
Sbjct: 67 VTCGTDRNAY 76
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 34.1 bits (76), Expect = 0.002
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTCLA 69
+ DI+ PS ++ S D + ++ + ++ + + + L C
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-DLLQSLRYKHPLLCCN 63
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 34.0 bits (76), Expect = 0.003
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 9 CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+ V ++I++ S D+ +
Sbjct: 299 SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332
Score = 25.5 bits (54), Expect = 1.8
Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 4 WAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGY 63
+ + H V +++ G++ +S +D G + +
Sbjct: 253 VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-----SKESS 307
Query: 64 DLTCLALI--STFVFASGADEKV 84
+ + ++ D+K
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKA 330
Score = 24.8 bits (52), Expect = 3.4
Identities = 6/58 (10%), Positives = 11/58 (18%)
Query: 10 VTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTC 67
+ +R + P G +I E T +
Sbjct: 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 33.3 bits (74), Expect = 0.004
Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 13/97 (13%)
Query: 8 PCVTVG-GHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLT 66
G H + + F +S S D ++ + N + +
Sbjct: 5 ATANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 67 CLALIS----------TFVFASGADEKVVRAFRTTQN 93
+ + A+ + + +R T+
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 32.1 bits (71), Expect = 0.009
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 6 QQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEM 55
+ GH V + + GQ ++S S D++ +L N
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Score = 30.9 bits (68), Expect = 0.026
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 1 MLVWAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQV 60
+ VT GH V + + ++I+S S+D+ G + Q
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----PLLMLQG 348
Query: 61 HGYDLTCLALISTF-------VFASGADEKVVRAFR 89
H + +A+ + VFA+G+ + R ++
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 24.8 bits (52), Expect = 3.4
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQT 39
H V +++ G+++ + T
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGCNKTT 85
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 30.6 bits (67), Expect = 0.032
Identities = 7/53 (13%), Positives = 12/53 (22%)
Query: 3 VWAQQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEM 55
V + H + PSG + S R+ +
Sbjct: 45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT 97
Score = 23.3 bits (48), Expect = 9.9
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 13 GGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
G + + + Q ++S+S +
Sbjct: 278 VGTRIEDQQLGIIWTKQALVSISANGFINF 307
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 30.6 bits (67), Expect = 0.036
Identities = 2/29 (6%), Positives = 9/29 (31%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+ D++ + ++ +D
Sbjct: 312 EVKNNLTDLRLSADRKTVMVRKDDGKIYT 340
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 29.9 bits (65), Expect = 0.050
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 6 QQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+ + H V ++ WE ++S D +
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR 283
Score = 25.7 bits (54), Expect = 1.5
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 6 QQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
+ T+ GH + + P +IS S D
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIME 35
>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1
(VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 29.2 bits (64), Expect = 0.066
Identities = 7/61 (11%), Positives = 13/61 (21%)
Query: 9 CVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTCL 68
C + +I + S + + + G L C
Sbjct: 23 CSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCR 82
Query: 69 A 69
A
Sbjct: 83 A 83
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 29.4 bits (64), Expect = 0.079
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 8 PCVTVGGHFGPVRDIQWEPSGQFIISVSEDQT 39
+ GG G V I+ + S + T
Sbjct: 297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328
Score = 27.1 bits (58), Expect = 0.59
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 14 GHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
GH V + G I+S S+D T ++
Sbjct: 14 GHDDHVITC-LQFCGNRIVSGSDDNTLKV 41
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 29.0 bits (63), Expect = 0.10
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 7 QPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRL 42
T+ H G V +Q+ I+S S D T +
Sbjct: 258 LCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 25.6 bits (54), Expect = 2.0
Identities = 3/38 (7%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 6 QQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLH 43
+ + + + ++ + +V +D + L
Sbjct: 314 KLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350
Score = 24.9 bits (52), Expect = 2.8
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 11 TVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDLTCLAL 70
T+ GH V + ++I+ ++D+ R++ + + H + L
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDS----INKKFLLQLSGHDGGVWALKY 61
Query: 71 ISTFVFASGAD 81
+ SG+
Sbjct: 62 AHGGILVSGST 72
Score = 24.1 bits (50), Expect = 5.8
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 6 QQPCVTVGGHFGPVRDIQWEPSGQFIISVSEDQTTRLHAPFVGKNTWYEMARPQVHGYDL 65
++ + + GH G V +++ G ++S S D+T R+ G T
Sbjct: 43 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101
Query: 66 TCLALISTFVFASGADEKV 84
++ D +
Sbjct: 102 IVEYKNIKYIVTGSRDNTL 120
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 24.9 bits (52), Expect = 3.3
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 13 GGHFGPVRDIQWEP--SGQFIISVSEDQTTRLHAPFVGKNTW----YEMARPQVHGYDLT 66
G V +++ P Q++ S E + K + + QV ++
Sbjct: 60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119
Query: 67 CLA 69
++
Sbjct: 120 DIS 122
>d1r5ja_ c.77.1.5 (A:) Phosphotransacetylase Pta {Streptococcus
pyogenes [TaxId: 1314]}
Length = 329
Score = 23.9 bits (51), Expect = 5.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 75 VFASGADEKVVRA 87
VF G DE+VVRA
Sbjct: 22 VFPEGNDERVVRA 34
>d1vmia_ c.77.1.5 (A:) Ethanolamine utilization protein EutD
{Escherichia coli [TaxId: 562]}
Length = 329
Score = 23.9 bits (51), Expect = 7.3
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 75 VFASGADEKVVRA 87
VF D++V++A
Sbjct: 24 VFPDALDQRVLKA 36
>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus
subtilis [TaxId: 1423]}
Length = 324
Score = 23.5 bits (50), Expect = 7.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 75 VFASGADEKVVRA 87
VF G DE+++ A
Sbjct: 21 VFPEGLDERILEA 33
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta
{Methanosarcina thermophila [TaxId: 2210]}
Length = 332
Score = 23.5 bits (50), Expect = 7.7
Identities = 2/13 (15%), Positives = 5/13 (38%)
Query: 75 VFASGADEKVVRA 87
D + ++A
Sbjct: 19 ALPETEDIRTLQA 31
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 23.2 bits (50), Expect = 8.1
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 76 FASGADEKVVRAFRTTQNFVDNI 98
+ + R +R N +
Sbjct: 37 PLTTGPPEFERVYRAQVNCSEYF 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.138 0.449
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,397
Number of extensions: 16949
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 46
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)