BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15191
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 130/339 (38%), Gaps = 75/339 (22%)
Query: 14 GKVLYTLTNHKSKVMAVKWNGEG------------------GKVLYTLTNHKSKVMAVKW 55
G++L TLT H S V V ++ +G G++L TLT H S V V
Sbjct: 47 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV-- 104
Query: 56 VLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWA 115
+ P+ + + S S DKT LW + L + S + ++ S D I A
Sbjct: 105 ----AFSPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPDGQTIASA 157
Query: 116 PD-PTTGLWLETARVGE-VGGNTLGFYGCKFGPRGDYIIAHGFQGSLHLDVTTWKQIQTL 173
D T LW ++ + + G++ +G F P G I + ++ L + +QTL
Sbjct: 158 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 217
Query: 174 PCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGV--------- 224
H ++ +AFSPD + S S D+ L+ R +L S NGV
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTI 277
Query: 225 ------------------------HKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPT 260
H +WGVA+S D + + S D +W
Sbjct: 278 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW------- 330
Query: 261 EEDLVQNTLWPEVQKLYGHGYEIYSLAASHDGTLLASAC 299
N +Q L GH ++ +A S DG +ASA
Sbjct: 331 ------NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 124/306 (40%), Gaps = 50/306 (16%)
Query: 14 GKVLYTLTNHKSKVMAVKWNGEG------------------GKVLYTLTNHKSKVMAVKW 55
G++L TLT H S V V + +G G++L TLT H S V V
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV-- 309
Query: 56 VLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWA 115
+ P+ + + S S DKT LW G +L + S + ++ S D I A
Sbjct: 310 ----AFSPDGQTIASASDDKTVKLWNR--NGQHLQT-LTGHSSSVWGVAFSPDGQTIASA 362
Query: 116 PD-PTTGLWLETARVGE-VGGNTLGFYGCKFGPRGDYIIAHGFQGSLHLDVTTWKQIQTL 173
D T LW ++ + + G++ G F P G I + ++ L + +QTL
Sbjct: 363 SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 422
Query: 174 PCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVA 233
H ++ +AFSPDD + S S D+ L+ R +L H + GVA
Sbjct: 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTG--------HSSSVRGVA 474
Query: 234 WSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAASHDGT 293
+S D + + S D +W N +Q L GH + +A S DG
Sbjct: 475 FSPDGQTIASASDDKTVKLW-------------NRNGQLLQTLTGHSSSVRGVAFSPDGQ 521
Query: 294 LLASAC 299
+ASA
Sbjct: 522 TIASAS 527
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 105/259 (40%), Gaps = 35/259 (13%)
Query: 14 GKVLYTLTNHKSKVMAVKWNGEG------------------GKVLYTLTNHKSKVMAVKW 55
G+ L TLT H S V V ++ +G G++L TLT H S V V
Sbjct: 334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV-- 391
Query: 56 VLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWA 115
+ P+ + + S S DKT LW G L S + D++I +
Sbjct: 392 ----AFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS 445
Query: 116 PDPTTGLWLETARVGE-VGGNTLGFYGCKFGPRGDYIIAHGFQGSLHLDVTTWKQIQTLP 174
D T LW ++ + + G++ G F P G I + ++ L + +QTL
Sbjct: 446 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505
Query: 175 CHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAW 234
H ++ +AFSPD + S S D+ L+ R +L H +WGVA+
Sbjct: 506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--------HSSSVWGVAF 557
Query: 235 SHDSRYFLTISRDGVCVVW 253
S D + + S D +W
Sbjct: 558 SPDGQTIASASSDKTVKLW 576
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 109/270 (40%), Gaps = 33/270 (12%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
WN G++L TLT H S V V + P+ + + S S DKT LW L
Sbjct: 43 WN-RNGQLLQTLTGHSSSVWGV------AFSPDGQTIASASDDKTVKLWN---RNGQLLQ 92
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAP-DPTTGLWLETARVGE-VGGNTLGFYGCKFGPRGD 149
+ S + ++ S D I A D T LW ++ + + G++ +G F P G
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 152
Query: 150 YIIAHGFQGSLHLDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSS 209
I + ++ L + +QTL H ++ +AFSPD + S S D+ L+ R
Sbjct: 153 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 212
Query: 210 GRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTL 269
+L H + GVA+S D + + S D +W N
Sbjct: 213 LLQTLTG--------HSSSVRGVAFSPDGQTIASASDDKTVKLW-------------NRN 251
Query: 270 WPEVQKLYGHGYEIYSLAASHDGTLLASAC 299
+Q L GH + +A DG +ASA
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 104/266 (39%), Gaps = 32/266 (12%)
Query: 36 GGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRD 95
G K L H S V V + P+ + + S S DKT LW L +
Sbjct: 5 GVKERNRLEAHSSSVRGV------AFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTG 55
Query: 96 DSKQLHLLSCSMDKSIIVWAP-DPTTGLWLETARVGE-VGGNTLGFYGCKFGPRGDYIIA 153
S + ++ S D I A D T LW ++ + + G++ G F P G I +
Sbjct: 56 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 115
Query: 154 HGFQGSLHLDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLS 213
++ L + +QTL H ++ +AFSPD + S S D+ L+ R +
Sbjct: 116 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 175
Query: 214 LVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEV 273
L H +WGVA+S D + + S D +W N +
Sbjct: 176 LTG--------HSSSVWGVAFSPDGQTIASASDDKTVKLW-------------NRNGQLL 214
Query: 274 QKLYGHGYEIYSLAASHDGTLLASAC 299
Q L GH + +A S DG +ASA
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASAS 240
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 102 LLSCSMDKSIIVW---APDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQG 158
LLS S DK++I W D G+ + + + G++ C G Y ++ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDK 87
Query: 159 SLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVAC 217
+L L DV T + Q H+ + + + ++S SRD+ ++ + +L+
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 218 SDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLY 277
+D + V R++ DS ++ D + W L + E D +
Sbjct: 148 NDWVSQV--RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI------------ 193
Query: 278 GHGYEIYSLAASHDGTLLASACK 300
GH I +L AS DGTL+ASA K
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK 216
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 32/173 (18%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW----------- 80
W+ G+ HKS VM+V +D + ++S S DKT +W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSV------DIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 81 ---KYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGG-NT 136
+VS+ +P DD + ++S DK + W + +E +G NT
Sbjct: 146 GHNDWVSQVRVVPNEKADDD-SVTIISAGNDKMVKAWNLNQ---FQIEADFIGHNSNINT 201
Query: 137 LGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPD 188
L P G I + G G + L ++ K + TL Q + LAFSP+
Sbjct: 202 L-----TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPN 248
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 102 LLSCSMDKSIIVW---APDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQG 158
LLS S DK++I W D G+ + + + G++ C G Y ++ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDK 87
Query: 159 SLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVAC 217
+L L DV T + Q H+ + + + ++S SRD+ ++ + +L+
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 218 SDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLY 277
+D + V R++ DS ++ D + W L + E D +
Sbjct: 148 NDWVSQV--RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI------------ 193
Query: 278 GHGYEIYSLAASHDGTLLASACK 300
GH I +L AS DGTL+ASA K
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK 216
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 32/173 (18%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW----------- 80
W+ G+ HKS VM+V +D + ++S S DKT +W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSV------DIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 81 ---KYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGG-NT 136
+VS+ +P DD + ++S DK + W + +E +G NT
Sbjct: 146 GHNDWVSQVRVVPNEKADDD-SVTIISAGNDKMVKAWNLNQ---FQIEADFIGHNSNINT 201
Query: 137 LGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPD 188
L P G I + G G + L ++ K + TL Q + LAFSP+
Sbjct: 202 L-----TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPN 248
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 102 LLSCSMDKSIIVW---APDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQG 158
LLS S DK++I W D G+ + + + G++ C G Y ++ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDK 87
Query: 159 SLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVAC 217
+L L DV T + Q H+ + + + ++S SRD+ ++ + +L+
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 218 SDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLY 277
+D + V R++ DS ++ D + W L + E D +
Sbjct: 148 NDWVSQV--RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI------------ 193
Query: 278 GHGYEIYSLAASHDGTLLASACK 300
GH I +L AS DGTL+ASA K
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK 216
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 32/173 (18%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW----------- 80
W+ G+ HKS VM+V +D + ++S S DKT +W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSV------DIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 81 ---KYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGG-NT 136
+VS+ +P DD + ++S DK + W + +E +G NT
Sbjct: 146 GHNDWVSQVRVVPNEKADDD-SVTIISAGNDKMVKAWNLNQ---FQIEADFIGHNSNINT 201
Query: 137 LGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPD 188
L P G I + G G + L ++ K + TL Q + LAFSP+
Sbjct: 202 L-----TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPN 248
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 102 LLSCSMDKSIIVW---APDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQG 158
LLS S DK++I W D G+ + + + G++ C G Y ++ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDK 87
Query: 159 SLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVAC 217
+L L DV T + Q H+ + + + ++S SRD+ ++ + +L+
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 218 SDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLY 277
+D + V R++ DS ++ D + W L + E D +
Sbjct: 148 NDWVSQV--RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI------------ 193
Query: 278 GHGYEIYSLAASHDGTLLASACK 300
GH I +L AS DGTL+ASA K
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK 216
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 32/173 (18%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW----------- 80
W+ G+ HKS VM+V +D + ++S S DKT +W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSV------DIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 81 ---KYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGG-NT 136
+VS+ +P DD + ++S DK + W + +E +G NT
Sbjct: 146 GHNDWVSQVRVVPNEKADDD-SVTIISAGNDKMVKAWNLNQ---FQIEADFIGHNSNINT 201
Query: 137 LGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPD 188
L P G I + G G + L ++ K + TL Q + LAFSP+
Sbjct: 202 L-----TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPN 248
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 23/203 (11%)
Query: 102 LLSCSMDKSIIVW---APDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQG 158
LLS S DK++I W D G+ + + + G++ C G Y ++ +
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDK 81
Query: 159 SLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVAC 217
+L L DV T + Q H+ + + + ++S SRD+ ++ + +L+
Sbjct: 82 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH 141
Query: 218 SDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLY 277
+D + V R++ DS ++ D + W L + E D +
Sbjct: 142 NDWVSQV--RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI------------ 187
Query: 278 GHGYEIYSLAASHDGTLLASACK 300
GH I +L AS DGTL+ASA K
Sbjct: 188 GHNSNINTLTASPDGTLIASAGK 210
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 32/173 (18%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW----------- 80
W+ G+ HKS VM+V +D + ++S S DKT +W
Sbjct: 86 WDVATGETYQRFVGHKSDVMSV------DIDKKASMIISGSRDKTIKVWTIKGQCLATLL 139
Query: 81 ---KYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGG-NT 136
+VS+ +P DD + ++S DK + W + +E +G NT
Sbjct: 140 GHNDWVSQVRVVPNEKADDD-SVTIISAGNDKMVKAWNLNQ---FQIEADFIGHNSNINT 195
Query: 137 LGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPD 188
L P G I + G G + L ++ K + TL Q + LAFSP+
Sbjct: 196 L-----TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPN 242
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)
Query: 102 LLSCSMDKSIIVW---APDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQG 158
LLS S DK++I W D G+ + + + G++ C G Y ++ +
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDK 87
Query: 159 SLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVAC 217
+L L DV T + Q H+ + + + ++S SRD+ ++ + +L+
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 218 SDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLY 277
+D + V R++ DS ++ D W L + E D +
Sbjct: 148 NDWVSQV--RVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFI------------ 193
Query: 278 GHGYEIYSLAASHDGTLLASACK 300
GH I +L AS DGTL+ASA K
Sbjct: 194 GHNSNINTLTASPDGTLIASAGK 216
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 32/173 (18%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW----------- 80
W+ G+ HKS V +V +D + ++S S DKT +W
Sbjct: 92 WDVATGETYQRFVGHKSDVXSV------DIDKKASXIISGSRDKTIKVWTIKGQCLATLL 145
Query: 81 ---KYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGG-NT 136
+VS+ +P DD + ++S DK + W + +E +G NT
Sbjct: 146 GHNDWVSQVRVVPNEKADDD-SVTIISAGNDKXVKAWNLNQ---FQIEADFIGHNSNINT 201
Query: 137 LGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPD 188
L P G I + G G + L ++ K TL Q + LAFSP+
Sbjct: 202 L-----TASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA-QDEVFSLAFSPN 248
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 78/213 (36%), Gaps = 32/213 (15%)
Query: 46 HKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLH---- 101
H+ V V W P L S S D T +WK + + ++
Sbjct: 60 HQRTVRKVAW------SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAW 113
Query: 102 ------LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHG 155
L +CS DKS+ VW D E V + +T + P + + +
Sbjct: 114 APSGNLLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWHPSQELLASAS 169
Query: 156 FQGSLHL---DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL 212
+ ++ L + W TL H+ T+ LAF P L S S DR ++++ G
Sbjct: 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229
Query: 213 SLVACSDKT---------NGVHKRIIWGVAWSH 236
VACS +G H R I+ +AW
Sbjct: 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 183 LAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFL 242
LA++P T L S DRR ++ + + C + H+R + VAWS Y
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWI----CKSVLSEGHQRTVRKVAWSPCGNYLA 77
Query: 243 TISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAASHDGTLLASACK 300
+ S D +W + E V L GH E+ S+A + G LLA+ +
Sbjct: 78 SASFDATTCIWKKNQDDFE----------CVTTLEGHENEVKSVAWAPSGNLLATCSR 125
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 176 HQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWS 235
HQ T+ ++A+SP +L S S D ++K+ C G H+ + VAW+
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD----FECVTTLEG-HENEVKSVAWA 114
Query: 236 HDSRYFLTISRDGVCVVWGLGEPPTEEDL-VQNTLWPEVQKLYGHGYEIYSLAASHDGTL 294
T SRD VW + E E + V N+ +V+ + H + +AS+D T+
Sbjct: 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 31/205 (15%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L SC D+ I +W + + W+ + + E G+ + P G+Y+ + F +
Sbjct: 31 LASCGGDRRIRIWGTEGDS--WICKSVLSE--GHQRTVRKVAWSPCGNYLASASFDAT-- 84
Query: 162 LDVTTWKQIQ-------TLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSL 214
WK+ Q TL H+ + +A++P L + SRD+ +++
Sbjct: 85 --TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 215 VACSDKTNGVHKRIIWGVAWSHDSRYFL-TISRDGVCVVWGLGEPPTEEDLVQNTLWPEV 273
V+ + K ++W H S+ L + S D ++ EED W
Sbjct: 143 VSVLNSHTQDVKHVVW-----HPSQELLASASYDDTVKLYR-----EEEDD-----WVCC 187
Query: 274 QKLYGHGYEIYSLAASHDGTLLASA 298
L GH ++SLA G LAS
Sbjct: 188 ATLEGHESTVWSLAFDPSGQRLASC 212
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 9/134 (6%)
Query: 170 IQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRII 229
+ L H + + + P L S S D LY+ + V C+ T H+ +
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED---DWVCCA--TLEGHESTV 197
Query: 230 WGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLV---QNTLWPEVQKLYG-HGYEIYS 285
W +A+ + + S D +W P E+ + + W + L G H IY
Sbjct: 198 WSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYD 257
Query: 286 LAASHDGTLLASAC 299
+A LA+AC
Sbjct: 258 IAWCQLTGALATAC 271
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 72 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 114
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 115 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 144
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 205 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 241
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 20/196 (10%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 60 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 112
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 113 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 172
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWP-EVQKLYG 278
+ VH ++ D ++ S DG+C +W + L+ + P K
Sbjct: 173 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224
Query: 279 HGYEIYSLAASHDGTL 294
+G Y LAA+ D TL
Sbjct: 225 NGK--YILAATLDNTL 238
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 89
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDV 116
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 74 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 116
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 117 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 146
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 207 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 243
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 20/196 (10%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 62 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 114
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 115 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 174
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWP-EVQKLYG 278
+ VH ++ D ++ S DG+C +W + L+ + P K
Sbjct: 175 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 226
Query: 279 HGYEIYSLAASHDGTL 294
+G Y LAA+ D TL
Sbjct: 227 NGK--YILAATLDNTL 240
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 91
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDV 118
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 56 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 98
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 99 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 128
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 189 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 225
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 44 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 157 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 207
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 208 PNGKYILAATLDNTL 222
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 73
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDV 100
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 56 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 98
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 99 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 128
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 189 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 225
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 44 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 157 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 207
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 208 PNGKYILAATLDNTL 222
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 73
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDV 100
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 46 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 88
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 89 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 118
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 179 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 215
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 34 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 86
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 87 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 146
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 147 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 197
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 198 PNGKYILAATLDNTL 212
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 63
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDV 90
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 67 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 109
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 110 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 139
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 200 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 236
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 55 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 107
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 108 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 167
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 168 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 218
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 219 PNGKYILAATLDNTL 233
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 84
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDV 111
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 55 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 97
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 98 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 127
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 188 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 224
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 43 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 95
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 96 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 155
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 156 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 206
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 207 PNGKYILAATLDNTL 221
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 72
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDV 99
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 56 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 98
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 99 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 128
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 189 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 225
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 44 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 157 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 207
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 208 PNGKYILAATLDNTL 222
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 73
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDV 100
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 53 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 95
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 96 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 125
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 186 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 222
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 20/196 (10%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 41 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWP-EVQKLYG 278
+ VH ++ D ++ S DG+C +W + L+ + P K
Sbjct: 154 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 279 HGYEIYSLAASHDGTL 294
+G Y LAA+ D TL
Sbjct: 206 NGK--YILAATLDNTL 219
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 70
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVW 253
I VAWS DS ++ S D +W
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIW 95
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 49 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 91
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 92 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 121
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 182 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 218
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 37 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 89
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 90 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 149
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 150 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 200
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 201 PNGKYILAATLDNTL 215
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 66
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDV 93
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 53 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 95
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 96 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 125
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 186 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 222
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L + S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 41 LAASSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 154 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 204
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 205 PNGKYILAATLDNTL 219
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L + S D+ WG Y G+ +KT HK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY----DGKF------EKTISGHKLG 70
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVW 253
I VAWS DS ++ S D +W
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIW 95
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 53 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 95
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 96 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 125
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 186 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 222
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 20/196 (10%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 41 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWP-EVQKLYG 278
+ VH ++ D ++ S DG+C +W + L+ + P K
Sbjct: 154 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 279 HGYEIYSLAASHDGTL 294
+G Y LAA+ D TL
Sbjct: 206 NGK--YILAATLDNTL 219
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 70
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVW 253
I VAWS DS ++ S D +W
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIW 95
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 50 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 92
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 93 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 122
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 183 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 219
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 38 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 151 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 201
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 202 PNGKYILAATLDNTL 216
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 67
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDV 94
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 50 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 92
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 93 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 122
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 183 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 219
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 38 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 151 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 201
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 202 PNGKYILAATLDNTL 216
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 67
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDV 94
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 54/223 (24%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W GK T++ HK + V W +++L LVS S DKT +W
Sbjct: 51 WGAYDGKFEKTISGHKLGISDVAWSSDSNL------LVSASDDKTLKIW----------- 93
Query: 92 HMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYI 151
D ++G L+T + G++ + C F P+ + I
Sbjct: 94 -------------------------DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLI 123
Query: 152 IAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
++ F S+ + DV T K ++TLP H ++ + F+ D + +VS S D ++ S
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
L + D + V +S + +Y L + D +W
Sbjct: 184 CLKTLIDDDNPP------VSFVKFSPNGKYILAATLDNTLKLW 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
L S S DK I +W G + +T + G+ LG + + +++ +L
Sbjct: 39 LASSSADKLIKIWGA--YDGKFEKT-----ISGHKLGISDVAWSSDSNLLVSASDDKTLK 91
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRL-SLVACSD 219
+ DV++ K ++TL H + F+P +VS S D ++ ++ L +L A SD
Sbjct: 92 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 151
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
+ VH ++ D ++ S DG+C +W + L+ + P V +
Sbjct: 152 PVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFS 202
Query: 280 GYEIYSLAASHDGTL 294
Y LAA+ D TL
Sbjct: 203 PNGKYILAATLDNTL 217
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRI 228
TL H ++ + FSP+ L S S D+ WG Y G+ +KT HK
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKF------EKTISGHKLG 68
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGL 255
I VAWS DS ++ S D +W +
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDV 95
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 73/258 (28%)
Query: 16 VLYTLTNHKSKVMAVKW--NGE-----------------GGKVLYTLTNHKSKVMAVKWV 56
+++TL H V +VK+ NGE GK T++ HK + V W
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 57 LNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAP 116
+++L LVS S DKT +W
Sbjct: 78 SDSNL------LVSASDDKTLKIW------------------------------------ 95
Query: 117 DPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPC 175
D ++G L+T + G++ + C F P+ + I++ F S+ + DV T ++TLP
Sbjct: 96 DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 176 HQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWS 235
H ++ + F+ D + +VS S D ++ S L + D + V +S
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP------VSFVKFS 204
Query: 236 HDSRYFLTISRDGVCVVW 253
+ +Y L + D +W
Sbjct: 205 PNGKYILAATLDNTLKLW 222
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 99/265 (37%), Gaps = 72/265 (27%)
Query: 39 VLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW--------KYVSEGNYLP 90
+++TL H V +VK P + L S S DK +W K +S
Sbjct: 18 LMFTLAGHTKAVSSVK------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 91 YHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDY 150
+ S L+S S DK++ +W D ++G L+T + G++ + C F P+ +
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 124
Query: 151 IIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSS 209
I++ F S+ + DV T ++TLP H
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAH--------------------------------- 151
Query: 210 GRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTL 269
SD + VH ++ D ++ S DG+C +W + L+ +
Sbjct: 152 --------SDPVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 270 WPEVQKLYGHGYEIYSLAASHDGTL 294
P V + Y LAA+ D TL
Sbjct: 196 -PPVSFVKFSPNGKYILAATLDNTL 219
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 67/203 (33%)
Query: 16 VLYTLTNHKSKVMAVKW--NGE-----------------GGKVLYTLTNHKSKVMAVKWV 56
+++TL H V +VK+ NGE GK T++ HK + V W
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 57 LNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAP 116
+++L LVS S DKT +W
Sbjct: 78 SDSNL------LVSASDDKTLKIW------------------------------------ 95
Query: 117 DPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPC 175
D ++G L+T + G++ + C F P+ + I++ F S+ + DV T ++TLP
Sbjct: 96 DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 176 HQLTITQLAFSPDDTHLVSVSRD 198
H ++ + F+ D + +VS S D
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYD 173
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 72/265 (27%)
Query: 39 VLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW--------KYVSEGNYLP 90
+++TL H V +VK P + L S S DK +W K +S
Sbjct: 18 LMFTLAGHTKAVSSVK------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 91 YHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDY 150
+ S L+S S DK++ +W D ++G L+T + G++ + C F P+ +
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 124
Query: 151 IIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSS 209
I++ F S+ + DV T ++TLP H
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAH--------------------------------- 151
Query: 210 GRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTL 269
SD + VH ++ D ++ S DG+C +W + L+ +
Sbjct: 152 --------SDPVSAVH--------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 270 WPEVQKLYGHGYEIYSLAASHDGTL 294
P V + Y LAA+ D L
Sbjct: 196 -PPVSFVKFSPNGKYILAATLDNDL 219
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 35/229 (15%)
Query: 54 KWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLP-------------YHMRDDSKQL 100
K VL+ + +++ +VS S D+T LW + E Y ++ Q
Sbjct: 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532
Query: 101 HLLSCSMDKSIIVWAPDPTTGLWLETARV-GEVGGNTLGFYGCKFGPRGDYIIAHGFQGS 159
++S S DK++ VW L ++ + G+T P G + G G
Sbjct: 533 TIVSASWDKTVKVWN--------LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 160 LHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRD--RRWGLYKRQ--SSGRLSL 214
+ L D+ K++ +L + + I L FSP+ L + + + W L + ++ L
Sbjct: 585 VLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDL 643
Query: 215 VACSDKTN-----GVHKRIIW--GVAWSHDSRYFLTISRDGVCVVWGLG 256
A ++K + +++I+ + WS D + DGV VWG+G
Sbjct: 644 KAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 21/202 (10%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
++S S DKSII+W + R + G++ G + ++ + G L
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQR--RLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDK 220
L D+ + H + +AFS D+ +VS SRDR L+ + ++ S+
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI---SEG 512
Query: 221 TNGVHKRIIWGVAWSHDSRY--FLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYG 278
G H+ + V +S ++ ++ S D VW L L G
Sbjct: 513 GEG-HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA------------G 559
Query: 279 HGYEIYSLAASHDGTLLASACK 300
H + ++A S DG+L AS K
Sbjct: 560 HTGYVSTVAVSPDGSLCASGGK 581
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 115/318 (36%), Gaps = 56/318 (17%)
Query: 19 TLTNHKSKVMAVKWNGE---------GGKVLY--TLTNHKSKVMAV--KWVLNTSLDPEH 65
TL H KV ++ W E G+++ LT+ K+ + + WV+ + P
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 66 KDLVSCSLDKTAILWKYVSEGNY---LPYHMRDDSKQLHLLSCS----MDKSIIVWAPDP 118
+ + LD ++ S+ + +P + + SC + +I + D
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 119 TTGLWLETARVGEVGGNTLGFYGCKFGPRG----------DYIIAHGF-QGSLHLDVTTW 167
T LW T G + +G +F P G + + A+ F GS V W
Sbjct: 181 TCVLWDVTT------GQRISIFGSEF-PSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 168 ------KQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKT 221
+ ++T H+ I + F PD + S D L+ ++ +L +
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293
Query: 222 NGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWG--LGEPPTEEDLVQNTLWPEVQKLYGH 279
N I+ VA+S R +G C VW L E +QN+ H
Sbjct: 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS----------H 343
Query: 280 GYEIYSLAASHDGTLLAS 297
I L S DG+ L +
Sbjct: 344 EGRISCLGLSSDGSALCT 361
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 97/262 (37%), Gaps = 36/262 (13%)
Query: 44 TNHKSKVMAVK----WVLNTSLDPEHKDLVSCSLDKTAILW--KYVSEGNYLPYHMRDDS 97
T+ +SKV + WV P+ ++ S D+T LW K V + + + D
Sbjct: 875 TDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVD- 933
Query: 98 KQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYG-CKFGPRGDYIIAHGF 156
+ ++V A D L L R G++ T C P YI
Sbjct: 934 ------VVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDE 987
Query: 157 QGSLH-LDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLV 215
G++ L++ + Q+ H+ T+ + F+ D+ L+S S D ++ Q + L
Sbjct: 988 NGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR 1047
Query: 216 ACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQK 275
H+ + +SR L+ S DG VW + E+D V
Sbjct: 1048 G--------HQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFV---------- 1088
Query: 276 LYGHGYEIYSLAASHDGTLLAS 297
H + S SHD T +S
Sbjct: 1089 --CHQGTVLSCDISHDATKFSS 1108
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 87/265 (32%), Gaps = 61/265 (23%)
Query: 10 NGEGGKVLYTLTNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTS--------- 60
N G++++T H +V + +L L S W LN
Sbjct: 691 NSMTGELVHTYDEHSEQVNCCHFTNSSHHLL--LATGSSDCFLKLWDLNQKECRNTMFGH 748
Query: 61 --------LDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSII 112
P+ K L SCS D T LW S +++ L+L D +I
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVK--QFFLNLEDPQEDMEVI 806
Query: 113 V----WAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHLDVTTWK 168
V W+ D AR+ N + + I G G +H
Sbjct: 807 VKCCSWSADG--------ARIMVAAKNKIFLFD---------IHTSGLLGEIHTG----- 844
Query: 169 QIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRI 228
H TI FSP + HL V+ ++ + + R + C + VH
Sbjct: 845 -------HHSTIQYCDFSPQN-HLAVVALS-QYCVELWNTDSRSKVADCRGHLSWVH--- 892
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVW 253
GV +S D FLT S D +W
Sbjct: 893 --GVMFSPDGSSFLTSSDDQTIRLW 915
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 18/167 (10%)
Query: 56 VLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDD--------SKQLHLLSCSM 107
V + + + + SC DKT ++K + L +D + + +CS+
Sbjct: 624 VYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSV 683
Query: 108 DKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHL---DV 164
DK + +W + TG + T N C F +++ L D+
Sbjct: 684 DKKVKIW--NSMTGELVHTYDEHSEQVNC-----CHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 165 TTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGR 211
+ T+ H ++ FSPDD L S S D L+ S+
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE 783
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 118/310 (38%), Gaps = 48/310 (15%)
Query: 15 KVLYTLTNHKSKVMAVKW---------NGEGGKVL----YTLTNHKSKVMAVKWVLNTSL 61
K TL H +KV+ + W + + GKV+ +T + M WV+ +
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 62 DPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLH---LLSCSM---DKSIIVWA 115
P + LD ++ + N + S +H L +CS D I+ +
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNE-NMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 116 PDPTTGLW-LETARVGE-VGGNTLGFYGCKFGPR--GDYIIAHGF-QGSLHLDVTTWKQI 170
D T LW +E+ ++ + G+ P G+ ++ G + ++ D+ + + +
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233
Query: 171 QTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIW 230
Q H+ + + + P S S D LY ++ +++ + + II+
Sbjct: 234 QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS--------KESIIF 285
Query: 231 G---VAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLA 287
G V +S R D VW D+++ + V L+GH + +L
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVW---------DVLKGS---RVSILFGHENRVSTLR 333
Query: 288 ASHDGTLLAS 297
S DGT S
Sbjct: 334 VSPDGTAFCS 343
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 17/233 (7%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNY-LP 90
WN + G+ Y H V++V + P+++ +VS D +W E + L
Sbjct: 94 WNLQNGQCQYKFLGHTKDVLSV------AFSPDNRQIVSGGRDNALRVWNVKGECMHTLS 147
Query: 91 YHMRDDSKQLHLLSCSMDKSIIVWAP-DPTTGLW-LETAR-VGEVGGNTLGFYGCKFGPR 147
D S S+D +IV D +W L T R V ++ G+T P
Sbjct: 148 RGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD 207
Query: 148 GDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKR 206
G + G L D+T + + + I Q+ FSP+ + + + G+
Sbjct: 208 GSLCASSDKDGVARLWDLTKGEALSEMAAGA-PINQICFSPNRYWMCAATEK---GIRIF 263
Query: 207 QSSGRLSLVACSDKTNGVHKRI--IWGVAWSHDSRYFLTISRDGVCVVWGLGE 257
+ +V + + G K + +AWS D + D V VWG+ E
Sbjct: 264 DLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 39/212 (18%)
Query: 102 LLSCSMDKSIIVWAPDP-----TTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGF 156
++S S DK+++ W P+P L R+ G++ G++ ++ +
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLE---GHSAFVSDVALSNNGNFAVSASW 87
Query: 157 QGSLHLDVTTWKQIQTLPC------HQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
SL L W +Q C H + +AFSPD+ +VS RD ++ +
Sbjct: 88 DHSLRL----W-NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC 142
Query: 211 RLSLVACSDKTNGVHKRIIWGVAWSH--DSRYFLTISRDGVCVVWGLGEPPTEEDLVQNT 268
+L + G H + V +S D+ ++ D + VW DL
Sbjct: 143 MHTL------SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW---------DLATGR 187
Query: 269 LWPEVQKLYGHGYEIYSLAASHDGTLLASACK 300
L V L GH + S+ S DG+L AS+ K
Sbjct: 188 L---VTDLKGHTNYVTSVTVSPDGSLCASSDK 216
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 163 DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTN 222
D+ KQI+++ + LAFSPD +L + + + ++ +S + S T
Sbjct: 108 DLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK----EYSLDTR 163
Query: 223 GVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYE 282
G + I +A+S D +Y + + DG+ ++ D+ L + L GH
Sbjct: 164 G---KFILSIAYSPDGKYLASGAIDGIINIF---------DIATGKL---LHTLEGHAMP 208
Query: 283 IYSLAASHDGTLLASAC 299
I SL S D LL +A
Sbjct: 209 IRSLTFSPDSQLLVTAS 225
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 101 HLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSL 160
+L S ++D I ++ D TG L T G+ + F P ++ G +
Sbjct: 178 YLASGAIDGIINIF--DIATGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDGYI 230
Query: 161 HL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHL 192
+ DV TL H + +AF PDDTH
Sbjct: 231 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 38/255 (14%)
Query: 23 HKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEH--------KDLVSCSLD 74
++ + K G+ G++ N K+ + V+ D + + + SC D
Sbjct: 584 YRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGAD 643
Query: 75 KTAILWKYVSEGNYLPYHMRDD--------SKQLHLLSCSMDKSIIVWAPDPTTGLWLET 126
KT ++K + L +D S ++ +CS DK + +W D TG + T
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHT 701
Query: 127 ARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHL---DVTTWKQIQTLPCHQLTITQL 183
N C F + ++++ L D+ + T+ H ++
Sbjct: 702 YDEHSEQVNC-----CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 184 AFSPDDTHLVSVSRD---RRWGLYKRQSSGRLSL------VACSDKTNGVHKRIIWGVAW 234
FSPDD L S S D R W + R ++ R S+ ++ D V + I+ +W
Sbjct: 757 RFSPDDELLASCSADGTLRLWDV--RSANERKSINVKRFFLSSEDPPEDV-EVIVKCCSW 813
Query: 235 SHDSRYFLTISRDGV 249
S D + +++ V
Sbjct: 814 SADGDKIIVAAKNKV 828
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 88/262 (33%), Gaps = 63/262 (24%)
Query: 14 GKVLYTLTNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTS------------- 60
GK+++T H +V + + +L L + W LN
Sbjct: 696 GKLVHTYDEHSEQVNCCHFTNKSNHLL--LATGSNDFFLKLWDLNQKECRNTMFGHTNSV 753
Query: 61 ----LDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAP 116
P+ + L SCS D T LW S ++ K +++ K + +
Sbjct: 754 NHCRFSPDDELLASCSADGTLRLWDVRSA---------NERKSINV------KRFFLSSE 798
Query: 117 DPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHLDVTTWKQIQTLPC- 175
DP + + C + GD II L D+ T + +
Sbjct: 799 DPPEDV-------------EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 845
Query: 176 HQLTITQLAFSPDDTHLVSVSRDRR----WGLYKRQSSGRLSLVACSDKTNGVHKRIIWG 231
H TI FSP D HL ++ + W + RL + C + VH G
Sbjct: 846 HHSTIQYCDFSPYD-HLAVIALSQYCVELWNI-----DSRLKVADCRGHLSWVH-----G 894
Query: 232 VAWSHDSRYFLTISRDGVCVVW 253
V +S D FLT S D VW
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVW 916
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 132 VGGNTLGFYGCKFGPRGDYIIAHGFQGSLH-LDVTTWKQIQTLPCHQLTITQLAFSPDDT 190
V +T Y F G I + G +L T +++ + H+ + AFS DD+
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 191 HLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFL--TISRDG 248
++ + S D++ ++ ++G+L T H + +++ S + L T S D
Sbjct: 678 YIATCSADKKVKIWD-SATGKLV------HTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 730
Query: 249 VCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAASHDGTLLASACKA 301
+W L + +NT ++GH + S D LLAS C A
Sbjct: 731 FLKLWDLNQKE-----CRNT-------MFGHTNSVNHCRFSPDDELLAS-CSA 770
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 32/249 (12%)
Query: 53 VKWVLNTSLDPEHKDLVSCSLDKTAILW--KYVSEGNYLPYHMRDDSKQLHLLSCSMDKS 110
+ WV P+ ++ S D+T +W K V + + + D +
Sbjct: 889 LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID-------VVFQENE 941
Query: 111 IIVWAPDPTTGLWLETARVGEVGG-NTLGFYGCKFGPRGDYIIAHGFQGSLH-LDVTTWK 168
+V A D GL L + G++ C P +Y+ G++ +++ +
Sbjct: 942 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 1001
Query: 169 QIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRI 228
+ H+ + + F+ D L+S S D ++ Q+ + L A H+
Sbjct: 1002 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA--------HQET 1053
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAA 288
+ DSR L+ S DG VW + E D H + S A
Sbjct: 1054 VKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFT------------CHQGTVLSCAI 1100
Query: 289 SHDGTLLAS 297
S D T +S
Sbjct: 1101 SSDATKFSS 1109
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 38/255 (14%)
Query: 23 HKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEH--------KDLVSCSLD 74
++ + K G+ G++ N K+ + V+ D + + + SC D
Sbjct: 577 YRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGAD 636
Query: 75 KTAILWKYVSEGNYLPYHMRDD--------SKQLHLLSCSMDKSIIVWAPDPTTGLWLET 126
KT ++K + L +D S ++ +CS DK + +W D TG + T
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHT 694
Query: 127 ARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHL---DVTTWKQIQTLPCHQLTITQL 183
N C F + ++++ L D+ + T+ H ++
Sbjct: 695 YDEHSEQVNC-----CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 184 AFSPDDTHLVSVSRD---RRWGLYKRQSSGRLSL------VACSDKTNGVHKRIIWGVAW 234
FSPDD L S S D R W + R ++ R S+ ++ D V + I+ +W
Sbjct: 750 RFSPDDELLASCSADGTLRLWDV--RSANERKSINVKRFFLSSEDPPEDV-EVIVKCCSW 806
Query: 235 SHDSRYFLTISRDGV 249
S D + +++ V
Sbjct: 807 SADGDKIIVAAKNKV 821
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 88/262 (33%), Gaps = 63/262 (24%)
Query: 14 GKVLYTLTNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTS------------- 60
GK+++T H +V + + +L L + W LN
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLL--LATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746
Query: 61 ----LDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAP 116
P+ + L SCS D T LW S ++ K +++ K + +
Sbjct: 747 NHCRFSPDDELLASCSADGTLRLWDVRSA---------NERKSINV------KRFFLSSE 791
Query: 117 DPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHLDVTTWKQIQTLPC- 175
DP + + C + GD II L D+ T + +
Sbjct: 792 DPPEDV-------------EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 838
Query: 176 HQLTITQLAFSPDDTHLVSVSRDRR----WGLYKRQSSGRLSLVACSDKTNGVHKRIIWG 231
H TI FSP D HL ++ + W + RL + C + VH G
Sbjct: 839 HHSTIQYCDFSPYD-HLAVIALSQYCVELWNI-----DSRLKVADCRGHLSWVH-----G 887
Query: 232 VAWSHDSRYFLTISRDGVCVVW 253
V +S D FLT S D VW
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVW 909
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 132 VGGNTLGFYGCKFGPRGDYIIAHGFQGSLH-LDVTTWKQIQTLPCHQLTITQLAFSPDDT 190
V +T Y F G I + G +L T +++ + H+ + AFS DD+
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 191 HLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFL--TISRDG 248
++ + S D++ ++ ++G+L T H + +++ S + L T S D
Sbjct: 671 YIATCSADKKVKIWD-SATGKLV------HTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723
Query: 249 VCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAASHDGTLLASACKA 301
+W L + +NT ++GH + S D LLAS C A
Sbjct: 724 FLKLWDLNQKE-----CRNT-------MFGHTNSVNHCRFSPDDELLAS-CSA 763
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 32/249 (12%)
Query: 53 VKWVLNTSLDPEHKDLVSCSLDKTAILW--KYVSEGNYLPYHMRDDSKQLHLLSCSMDKS 110
+ WV P+ ++ S D+T +W K V + + + D +
Sbjct: 882 LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID-------VVFQENE 934
Query: 111 IIVWAPDPTTGLWLETARVGEVGG-NTLGFYGCKFGPRGDYIIAHGFQGSLH-LDVTTWK 168
+V A D GL L + G++ C P +Y+ G++ +++ +
Sbjct: 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994
Query: 169 QIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRI 228
+ H+ + + F+ D L+S S D ++ Q+ + L A H+
Sbjct: 995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA--------HQET 1046
Query: 229 IWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAA 288
+ DSR L+ S DG VW + E D H + S A
Sbjct: 1047 VKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFT------------CHQGTVLSCAI 1093
Query: 289 SHDGTLLAS 297
S D T +S
Sbjct: 1094 SSDATKFSS 1102
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 41/211 (19%)
Query: 102 LLSCSMDKSIIVW--APDPTT-GLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQG 158
+LS S DK+II+W D T G+ R G++ G + ++ + G
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALR-----GHSHFVSDVVISSDGQFALSGSWDG 108
Query: 159 SLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGL--------YKRQSS 209
+L L D+TT + H + +AFS D+ +VS SRD+ L Y Q
Sbjct: 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168
Query: 210 GRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTL 269
V+C + II W D + VW L + + +
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGW------------DKLVKVWNLANCKLKTNHI---- 212
Query: 270 WPEVQKLYGHGYEIYSLAASHDGTLLASACK 300
GH + ++ S DG+L AS K
Sbjct: 213 --------GHTGYLNTVTVSPDGSLCASGGK 235
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 84/229 (36%), Gaps = 25/229 (10%)
Query: 40 LYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLP--------- 90
L T T + V K VL+ + +++ +VS S DKT LW + Y
Sbjct: 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174
Query: 91 --YHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGG-NTLGFYGCKFGPR 147
+S ++SC DK + VW L+T +G G NT+ P
Sbjct: 175 SCVRFSPNSSNPIIVSCGWDKLVKVWN---LANCKLKTNHIGHTGYLNTV-----TVSPD 226
Query: 148 GDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVS--RDRRWGLY 204
G + G G L D+ K + TL + I L FSP+ L + + + W L
Sbjct: 227 GSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLE 285
Query: 205 KRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
+ L S + + +AWS D + D + VW
Sbjct: 286 GKIIVDELKQEVISTSSKAEPPQCT-SLAWSADGQTLFAGYTDNLVRVW 333
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 159 SLHLDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG----RLSL 214
S+ D T + H+ I +A+ P + L + S D ++ ++ S + L
Sbjct: 40 SVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDL 99
Query: 215 VACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQ--NTLWPE 272
+A + H+ + GVAWS+D Y T SRD +W E E + + +
Sbjct: 100 LAIIEG----HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 273 VQKLYGHGYEIYSLAASHDGTL 294
V+ + H E ++S+D T+
Sbjct: 156 VKHVIWHPSEALLASSSYDDTV 177
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 98/256 (38%), Gaps = 34/256 (13%)
Query: 21 TNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW 80
T+ K K+++VK++ + T HK + +V W +TSL L + S D T +W
Sbjct: 32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL------LAAGSFDSTVSIW 85
Query: 81 KYVSEGN---------YLPYHMRD------DSKQLHLLSCSMDKSIIVWAPDPTTGLWLE 125
+ + H + + +L +CS DKS+ +W D + E
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE---E 142
Query: 126 TARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHL--DV-TTWKQIQTLPCHQLTITQ 182
+ + ++ + P + + + ++ + D W+ + L H+ T+
Sbjct: 143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202
Query: 183 LAFSPDD--THLVSVSRD---RRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHD 237
F + L S S D R W + V C VHKR ++ VAW +
Sbjct: 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV-CEAILPDVHKRQVYNVAWGFN 261
Query: 238 SRYFLTISRDGVCVVW 253
++ DGV V+
Sbjct: 262 G-LIASVGADGVLAVY 276
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 16/134 (11%)
Query: 170 IQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRII 229
I++L ++ I FS L + S DR+ L + +L+ D+T HK+ I
Sbjct: 7 IKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDD-FTLIDVLDET--AHKKAI 61
Query: 230 WGVAWSHDSRYFLTISRDGVCVVWGLGEPPT---EEDLVQNTLWPEVQKLYGHGYEIYSL 286
VAW + S D +W E E DL+ + GH E+ +
Sbjct: 62 RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA--------IIEGHENEVKGV 113
Query: 287 AASHDGTLLASACK 300
A S+DG LA+ +
Sbjct: 114 AWSNDGYYLATCSR 127
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 41/211 (19%)
Query: 102 LLSCSMDKSIIVW--APDPTT-GLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQG 158
+LS S DK+II+W D T G+ R G++ G + ++ + G
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALR-----GHSHFVSDVVISSDGQFALSGSWDG 85
Query: 159 SLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGL--------YKRQSS 209
+L L D+TT + H + +AFS D+ +VS SRD+ L Y Q
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 145
Query: 210 GRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTL 269
V+C + II W D + VW L + + +
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGW------------DKLVKVWNLANCKLKTNHI---- 189
Query: 270 WPEVQKLYGHGYEIYSLAASHDGTLLASACK 300
GH + ++ S DG+L AS K
Sbjct: 190 --------GHTGYLNTVTVSPDGSLCASGGK 212
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 84/229 (36%), Gaps = 25/229 (10%)
Query: 40 LYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLP--------- 90
L T T + V K VL+ + +++ +VS S DKT LW + Y
Sbjct: 92 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 151
Query: 91 --YHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGG-NTLGFYGCKFGPR 147
+S ++SC DK + VW L+T +G G NT+ P
Sbjct: 152 SCVRFSPNSSNPIIVSCGWDKLVKVWN---LANCKLKTNHIGHTGYLNTV-----TVSPD 203
Query: 148 GDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVS--RDRRWGLY 204
G + G G L D+ K + TL + I L FSP+ L + + + W L
Sbjct: 204 GSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLE 262
Query: 205 KRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
+ L S + + +AWS D + D + VW
Sbjct: 263 GKIIVDELKQEVISTSSKAEPPQCT-SLAWSADGQTLFAGYTDNLVRVW 310
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 147 RGDYIIAHGFQGSL-HLDVTT-WKQIQTLPCHQLTITQLAFSPDDTHLVSVSRD 198
+G YIIA G + DV+ ++ + ++ H+ +I+ + FSPD T+ ++ SRD
Sbjct: 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 102 LLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLH 161
++S S D +I VW D TG + T + G+T F G + + ++
Sbjct: 123 MVSASEDATIKVW--DYETGDFERTLK-----GHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 162 L-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDK 220
L D ++ I+T+ H ++ ++ P+ H+VS SRD+ +++ Q+ + K
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-------K 228
Query: 221 TNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQN 267
T H+ + V + D + S D VW + + +L ++
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 14/91 (15%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W+ E G TL H V + S D K L SCS D T LW +
Sbjct: 135 WDYETGDFERTLKGHTDSVQDI------SFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188
Query: 92 HMRDDSKQL--------HLLSCSMDKSIIVW 114
H D + H++S S DK+I +W
Sbjct: 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 31/163 (19%)
Query: 167 WKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHK 226
+K T H + + ++PD + S D LY + + N H
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 227 RIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTE---------EDLVQNTLW------- 270
++G+ WS D + S D +W + E ED +W
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299
Query: 271 -----------PEV----QKLYGHGYEIYSLAASHDGTLLASA 298
PE+ Q YGH I +L++S DG L SA
Sbjct: 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA 342
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 169 QIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNG--VHK 226
+++T+ H IT +AFS + LV+ + R+ Y ++ L+ TN H
Sbjct: 484 EVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA------HTNSWTFHT 536
Query: 227 RIIWGVAWSHDSRYFLTISRDGVCVVWGLGEP 258
+ V+WS D+ T S D +VW + +P
Sbjct: 537 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 18 YTLTNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTA 77
Y L+ K + + W+ + G L L H++ V++V +SL PE+ + S D A
Sbjct: 324 YILSGSKDRGVLF-WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 382
Query: 78 ILWKY 82
+WKY
Sbjct: 383 RIWKY 387
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 5/170 (2%)
Query: 134 GNTLGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDD-TH 191
G+ Y + P GD +++ ++ + D+ T + TL +T +A SP D +
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKY 221
Query: 192 LVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCV 251
+ + S DR ++ ++ + + +++ HK ++ V ++ D + ++ S D
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 252 VWGLGEPPTEED-LVQNTLWPEVQKLYGHGYEIYSLAASHDGTLLASACK 300
+W L + D N+ EV + GH + S+A + + + S K
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSK 330
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 60/235 (25%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
W+ E K++ L H+ + ++ + P LVS S D+T +W + L
Sbjct: 150 WDIENRKIVMILQGHEQDIYSLDYF------PSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 92 HMRDDSKQL--------HLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCK 143
+ D + ++ + S+D+++ VW D TG +E
Sbjct: 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW--DSETGFLVE------------------ 243
Query: 144 FGPRGDYIIAHGFQGSLHLDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGL 203
LD + ++ H+ ++ + F+ D +VS S DR L
Sbjct: 244 -----------------RLD----SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282
Query: 204 YKRQSSGRLSLVACSDK-----TNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
+ Q++ S + T HK + VA + + Y L+ S+D + W
Sbjct: 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 122/313 (38%), Gaps = 62/313 (19%)
Query: 11 GEGGKVLYTLTNHKSKVMA------VK-WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDP 63
E K +Y L K+++ +K W+ + LT H V+ +++
Sbjct: 130 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-------- 181
Query: 64 EHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHL-------LSCSMDKSIIVWAP 116
+ + +++ S D T +W V+ G L + LHL ++CS D+SI VW
Sbjct: 182 DERVIITGSSDSTVRVWD-VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 240
Query: 117 DPTTGLWLETARVGEVGG-NTLGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLP 174
T + L VG N + F YI++ ++ + + +T + ++TL
Sbjct: 241 ASPTDITLRRVLVGHRAAVNVVDF-------DDKYIVSASGDRTIKVWNTSTCEFVRTLN 293
Query: 175 CHQLTITQLAFSPDDTHLVSVSRD---RRW----GLYKRQSSGRLSLVACSDKTNGVHKR 227
H+ I L + D +VS S D R W G R G LV C N KR
Sbjct: 294 GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---KR 348
Query: 228 IIWGVAWSHDSRYFLTISRDGVCVVW----GLGEPPTEEDLVQNTLWPEVQKLYGHGYEI 283
I+ G + DG VW L L TL +++ ++
Sbjct: 349 IVSG-------------AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE 395
Query: 284 YSL-AASHDGTLL 295
+ + ++SHD T+L
Sbjct: 396 FQIVSSSHDDTIL 408
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 38/244 (15%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY 91
WN E G+ ++TL H S V + K +VS S D T +W + G L
Sbjct: 184 WNAETGECIHTLYGHTSTVRC--------MHLHEKRVVSGSRDATLRVWD-IETGQCLHV 234
Query: 92 HM---------RDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGC 142
M + D ++ ++S + D + VW P+ T L + G+T Y
Sbjct: 235 LMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCL-------HTLQGHTNRVYSL 285
Query: 143 KFGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRW 201
+F G ++++ S+ + DV T I TL HQ + + D LVS + D
Sbjct: 286 QFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTV 341
Query: 202 GLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTE 261
++ ++ C G +K + + +T S DG +W L
Sbjct: 342 KIWDIKTG------QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395
Query: 262 EDLV 265
+LV
Sbjct: 396 RNLV 399
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 37/142 (26%)
Query: 10 NGEGGKVLYTLTNHKSKVMAVK-----------------WNGEGGKVLYTLTNHKSKVMA 52
N E G+ ++TL H S V + W+ E G+ L+ L H + V
Sbjct: 185 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244
Query: 53 VKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEG--------NYLPYHMRDDSKQLHLLS 104
V++ + + +VS + D +W +E Y ++ D +H++S
Sbjct: 245 VQY--------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVS 294
Query: 105 CSMDKSIIVWAPDPTTGLWLET 126
S+D SI VW D TG + T
Sbjct: 295 GSLDTSIRVW--DVETGNCIHT 314
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 15 KVLYTLTNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLD 74
+ + T ++V + +G G K T ++H V V W P+ +V+CS D
Sbjct: 23 RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA------PKSNRIVTCSQD 76
Query: 75 KTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVWAPD 117
+ A +++ +G + + L LL + + + W+P+
Sbjct: 77 RNAYVYEKRPDGTW--------KQTLVLLRLNRAATFVRWSPN 111
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 163 DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSG 210
D WK +T H +T + ++P +V+ S+DR +Y+++ G
Sbjct: 41 DGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 188 DDTHLVSVSRDRR---WGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTI 244
D L+S SRD+ W LY+ + +G + K H + +A S ++ + ++
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGI---PHKALTGHNHFVSDLALSQENCFAISS 94
Query: 245 SRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAASHDGTLLASA 298
S D +W DL T + ++ GH E+YS+A S D + SA
Sbjct: 95 SWDKTLRLW---------DLRTGTTY---KRFVGHQSEVYSVAFSPDNRQILSA 136
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 27/175 (15%)
Query: 46 HKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPY--HMRD-------- 95
HK+ +V + +L E+ +S S DKT LW + Y + H +
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 96 DSKQLHLLSCSMDKSIIVW----------APDPTTGLWLETARVGEVGGNTLGFYGCKFG 145
D++Q +LS ++ I +W A W+ R + + K
Sbjct: 129 DNRQ--ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS-----ANKVQ 181
Query: 146 PRGDYIIAHGFQGSLHLDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRR 200
P Y + G+ G L + T ++ T H+ + L+ SP+ ++ + +D++
Sbjct: 182 PFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 15/122 (12%)
Query: 91 YHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVG-------GNTLGFYGCK 143
+ +++ L+S S DK++++W E + G G G+
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWK-------LYEEEQNGYFGIPHKALTGHNHFVSDLA 83
Query: 144 FGPRGDYIIAHGFQGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWG 202
+ I+ + +L L D+ T + HQ + +AFSPD+ ++S +R
Sbjct: 84 LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK 143
Query: 203 LY 204
L+
Sbjct: 144 LW 145
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 30 VKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYL 89
+ W+ K LY L+ H ++ + T D E K +S S+D T +W E L
Sbjct: 293 IVWDVAQMKCLYILSGHTDRIYS------TIYDHERKRCISASMDTTIRIWDL--ENGEL 344
Query: 90 PYHMRDDSKQLHLLSCSMDKSIIVWAPDPTTGLW 123
Y ++ + + LL S DK ++ A D + W
Sbjct: 345 MYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGW 377
>pdb|3FDR|A Chain A, Crystal Structure Of Tdrd2
Length = 94
Score = 30.8 bits (68), Expect = 1.00, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 112 IVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGD 149
IV AP PT G W +G + L Y FG GD
Sbjct: 33 IVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGD 70
>pdb|2DIQ|A Chain A, Solution Structure Of The Tudor Domain Of Tudor And Kh
Domain Containing Protein
Length = 110
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 112 IVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGD 149
IV AP PT G W +G + L Y FG GD
Sbjct: 38 IVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGD 75
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 14 GKVLYTLTNHKS-KVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKD-LVSC 71
GK L T ++ K+ K+ V+ GE K++ TLT H+ V V W P+ L SC
Sbjct: 21 GKRLATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWA-----HPKFGTILASC 73
Query: 72 SLDKTAILWK 81
S D ++WK
Sbjct: 74 SYDGKVLIWK 83
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 219 DKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTE 261
+K GVH ++ V+ + +I R G CV+ GL PP E
Sbjct: 226 EKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGL--PPEE 266
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 219 DKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTE 261
+K GVH ++ V+ + +I R G CV+ GL PP E
Sbjct: 226 EKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGL--PPEE 266
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 14 GKVLYTLTNHKS-KVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKD-LVSC 71
GK L T ++ K+ K+ V+ GE K++ TLT H+ V V W P+ L SC
Sbjct: 23 GKRLATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWA-----HPKFGTILASC 75
Query: 72 SLDKTAILWK 81
S D ++WK
Sbjct: 76 SYDGKVLIWK 85
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 7 DVVNGEGGKVLYTLTNHKS-KVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEH 65
D V GK L T ++ K+ K+ V+ GE K++ TLT H+ V V W P+
Sbjct: 14 DAVLDYYGKRLATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWA-----HPKF 66
Query: 66 KD-LVSCSLDKTAILWK 81
L SCS D ++WK
Sbjct: 67 GTILASCSYDGKVLIWK 83
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 7 DVVNGEGGKVLYTLTNHKS-KVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEH 65
D V GK + T ++ K+ K+ V+ GE K++ TLT H+ V V W P+
Sbjct: 14 DAVMDYYGKRMATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWA-----HPKF 66
Query: 66 KD-LVSCSLDKTAILWK 81
L SCS D ++WK
Sbjct: 67 GTILASCSYDGKVMIWK 83
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 23/182 (12%)
Query: 73 LDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKSIIVW---APDPTTGLWLETARV 129
L + A+L Y + + + K LSC D I++W P P T R+
Sbjct: 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-------RI 220
Query: 130 GEVGGNTLGFYGCKFGPRGDYIIAHGFQ-GSLHL-DVTTWKQIQTLPCHQLTITQLAFSP 187
+T+ + P D A G + G++ L ++ QT H IT LA+S
Sbjct: 221 DFCASDTIP-TSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSY 279
Query: 188 DDT-HLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSH-DSRYFLTIS 245
+ L S+S D + S ++ H+ + GVAWS D F T+
Sbjct: 280 HSSPFLASISEDCTVAVLDADFSEVFRDLS--------HRDFVTGVAWSPLDHSKFTTVG 331
Query: 246 RD 247
D
Sbjct: 332 WD 333
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 225 HKRIIWGVAWSHDSR-YFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEI 283
H + + VAW ++ L+ D V +VW +G TL P+V H I
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGT-----GAAVLTLGPDV-----HPDTI 179
Query: 284 YSLAASHDGTLLASACK 300
YS+ S DG L+ ++C+
Sbjct: 180 YSVDWSRDGALICTSCR 196
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 162 LDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYK-RQSSGRLSLVACSDK 220
LD Q + H IT+L F P L+S S+D + ++ + S +L+
Sbjct: 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---- 179
Query: 221 TNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPT 260
H+ + +A R L+ S DG +W G T
Sbjct: 180 ----HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 162 LDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYK-RQSSGRLSLVACSDK 220
LD Q + H IT+L F P L+S S+D + ++ + S +L+
Sbjct: 121 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---- 176
Query: 221 TNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPT 260
H+ + +A R L+ S DG +W G T
Sbjct: 177 ----HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 212
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 40 LYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRD--DS 97
LYTL H+ V SL + ++S S DKTA +WK S L H D+
Sbjct: 97 LYTLIGHQGNVC--------SLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDA 148
Query: 98 K-----QLHLLSCSMDKSIIVWAPD 117
K + L+ S DK+I +W D
Sbjct: 149 KVVSFSENKFLTASADKTIKLWQND 173
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 37 GKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDD 96
G VL T H+S V +K + N D+VSC D+T +W E L +
Sbjct: 215 GDVLRTYEGHESFVYCIKLLPN-------GDIVSCGEDRTVRIWS--KENGSLKQVITLP 265
Query: 97 SKQLHLLSCSMDKSIIVWAPD 117
+ + + C + IIV + D
Sbjct: 266 AISIWSVDCXSNGDIIVGSSD 286
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 33/265 (12%)
Query: 1 MKSEPGDVVNGEGGKVLYTLTNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTS 60
+K++ D L +TN+ V ++ + TL H +K+ A+ W ++
Sbjct: 14 LKNQIRDARKACADATLSQITNNIDPVGRIQM-----RTRRTLRGHLAKIYAMHWGTDSR 68
Query: 61 LDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKS---IIVWAPD 117
L LVS S D I+W + +R +++C+ S + D
Sbjct: 69 L------LVSASQDGKLIIWDSYTTNKVHAIPLRSS----WVMTCAYAPSGNYVACGGLD 118
Query: 118 PTTGLWLETARVG------EVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHLDVTTWKQIQ 171
++ R G E+ G+T C+F + + G D+ T +Q
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYK-RQSSGRLSLVACSDKTNGVHKRIIW 230
T H + L+ +PD VS + D L+ R+ R + H+ I
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--------HESDIN 230
Query: 231 GVAWSHDSRYFLTISRDGVCVVWGL 255
+ + + F T S D C ++ L
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 33/265 (12%)
Query: 1 MKSEPGDVVNGEGGKVLYTLTNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTS 60
+K++ D L +TN+ V ++ + TL H +K+ A+ W ++
Sbjct: 25 LKNQIRDARKACADATLSQITNNIDPVGRIQM-----RTRRTLRGHLAKIYAMHWGTDSR 79
Query: 61 LDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKS---IIVWAPD 117
L LVS S D I+W + +R +++C+ S + D
Sbjct: 80 L------LVSASQDGKLIIWDSYTTNKVHAIPLRSS----WVMTCAYAPSGNYVACGGLD 129
Query: 118 PTTGLWLETARVG------EVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHLDVTTWKQIQ 171
++ R G E+ G+T C+F + + G D+ T +Q
Sbjct: 130 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 189
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYK-RQSSGRLSLVACSDKTNGVHKRIIW 230
T H + L+ +PD VS + D L+ R+ R + H+ I
Sbjct: 190 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--------HESDIN 241
Query: 231 GVAWSHDSRYFLTISRDGVCVVWGL 255
+ + + F T S D C ++ L
Sbjct: 242 AICFFPNGNAFATGSDDATCRLFDL 266
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 33/265 (12%)
Query: 1 MKSEPGDVVNGEGGKVLYTLTNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTS 60
+K++ D L +TN+ V ++ + TL H +K+ A+ W ++
Sbjct: 14 LKNQIRDARKACADATLSQITNNIDPVGRIQM-----RTRRTLRGHLAKIYAMHWGTDSR 68
Query: 61 LDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLHLLSCSMDKS---IIVWAPD 117
L LVS S D I+W + +R +++C+ S + D
Sbjct: 69 L------LVSASQDGKLIIWDSYTTNKVHAIPLRSS----WVMTCAYAPSGNYVACGGLD 118
Query: 118 PTTGLWLETARVG------EVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHLDVTTWKQIQ 171
++ R G E+ G+T C+F + + G D+ T +Q
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 172 TLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYK-RQSSGRLSLVACSDKTNGVHKRIIW 230
T H + L+ +PD VS + D L+ R+ R + H+ I
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--------HESDIN 230
Query: 231 GVAWSHDSRYFLTISRDGVCVVWGL 255
+ + + F T S D C ++ L
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDL 255
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 225 HKRIIWGVAWSHDSR-YFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEI 283
H + + VAW ++ L+ D V +VW +G TL P+V H I
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-----GAAVLTLGPDV-----HPDTI 179
Query: 284 YSLAASHDGTLLASACKATK 303
YS+ S DG L+ ++C+ +
Sbjct: 180 YSVDWSRDGALICTSCRDKR 199
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 7 DVVNGEGGKVLYTLTNHKS-KVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEH 65
D V GK T ++ K+ K+ V+ GE K++ TLT H+ V V W P+
Sbjct: 14 DAVXDYYGKRXATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWA-----HPKF 66
Query: 66 KD-LVSCSLDKTAILWK 81
L SCS D +WK
Sbjct: 67 GTILASCSYDGKVXIWK 83
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 225 HKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
H I+ + W DSR L+ S+DG ++W
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIW 82
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 19/115 (16%)
Query: 146 PRGDYIIAHGFQGS--------------LHLDVTTWKQIQTLP----CHQLTITQLAFSP 187
PR DYI+A S + LD K+ Q + H + L F+
Sbjct: 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255
Query: 188 DDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFL 242
D HL++V D R L+ S+G +LV N K + + V+ S +
Sbjct: 256 DGLHLLTVGTDNRMRLWN-SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 225 HKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
H I+ + W DSR L+ S+DG ++W
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIW 82
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 32 WNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVS 84
WN + G +L L H++ +++VKW + D H ++S ++ ILW +S
Sbjct: 135 WN-KTGALLNVLNFHRAPIVSVKW----NKDGTH--IISMDVENVTILWNVIS 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,803,062
Number of Sequences: 62578
Number of extensions: 470056
Number of successful extensions: 1421
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 266
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)