RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15191
(312 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 99.7 bits (249), Expect = 2e-24
Identities = 86/313 (27%), Positives = 115/313 (36%), Gaps = 70/313 (22%)
Query: 19 TLTNHKSKVMAVK-------------------WNGEGGKVLYTLTNHKSKVMAVKWVLNT 59
TL H V V W+ E G++L TL H V V +
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 60 SLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRDDSKQLH----------LLSCSMDK 109
+ L S S DKT LW E + + + L S S DK
Sbjct: 64 TY------LASGSSDKTIRLWDL--ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK 115
Query: 110 SIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWK 168
+I VW D TG + + G+T F P G ++ + G++ L D+ T K
Sbjct: 116 TIKVW--DVETGK-----CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168
Query: 169 QIQTLPCHQLTITQLAFSPDDTHLVSVSRD---RRWGLYKRQSSGRLSLVACSDKTNGVH 225
+ TL H + +AFSPD L+S S D + W L + G L H
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR----------GH 218
Query: 226 KRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYS 285
+ + VA+S D + S DG VW DL VQ L GH + S
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVW---------DLRTGEC---VQTLSGHTNSVTS 266
Query: 286 LAASHDGTLLASA 298
LA S DG LAS
Sbjct: 267 LAWSPDGKRLASG 279
Score = 87.8 bits (218), Expect = 4e-20
Identities = 62/219 (28%), Positives = 89/219 (40%), Gaps = 41/219 (18%)
Query: 8 VVNGEGGKVLYTLTNHKSKVMAVK-------------------WNGEGGKVLYTLTNHKS 48
+ + E G+ + TLT H S V +V W+ E GK L TL H
Sbjct: 77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136
Query: 49 KVMAVKWVLNTSLDPEHKDLVSCSLDKTAILW-------KYVSEGNYLP-YHMRDDSKQL 100
V +V + P+ + S S D T LW G+ +
Sbjct: 137 WVNSVAF------SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190
Query: 101 HLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSL 160
LLS S D +I +W D +TG L T R G+ G F P G + + G++
Sbjct: 191 KLLSSSSDGTIKLW--DLSTGKCLGTLR-----GHENGVNSVAFSPDGYLLASGSEDGTI 243
Query: 161 HL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRD 198
+ D+ T + +QTL H ++T LA+SPD L S S D
Sbjct: 244 RVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282
Score = 87.0 bits (216), Expect = 9e-20
Identities = 75/278 (26%), Positives = 109/278 (39%), Gaps = 56/278 (20%)
Query: 8 VVNGEGGKVLYTLTNHKSKVMAVK-------------------WNGEGGKVLYTLTNHKS 48
V + E G++L TL H V V W+ E G+ + TLT H S
Sbjct: 35 VWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS 94
Query: 49 KVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNY---LPYHMRD------DSKQ 99
V +V + P+ + L S S DKT +W V G L H
Sbjct: 95 YVSSVAF------SPDGRILSSSSRDKTIKVWD-VETGKCLTTLRGHTDWVNSVAFSPDG 147
Query: 100 LHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGS 159
+ S S D +I +W D TG + T G+T F P G+ +++ G+
Sbjct: 148 TFVASSSQDGTIKLW--DLRTGKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSSDGT 200
Query: 160 LHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRR---WGLYKRQSSGRLSLV 215
+ L D++T K + TL H+ + +AFSPD L S S D W L + LS
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG- 259
Query: 216 ACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
H + +AWS D + + S DG +W
Sbjct: 260 ---------HTNSVTSLAWSPDGKRLASGSADGTIRIW 288
Score = 69.3 bits (170), Expect = 2e-13
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 27/200 (13%)
Query: 101 HLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSL 160
L + S D +I VW D TG L T + G+T G Y+ + ++
Sbjct: 23 LLATGSGDGTIKVW--DLETGELLRT-----LKGHTGPVRDVAASADGTYLASGSSDKTI 75
Query: 161 HL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSD 219
L D+ T + ++TL H ++ +AFSPD L S SRD+ ++ ++ L+ +
Sbjct: 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-- 133
Query: 220 KTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGH 279
H + VA+S D + + S+DG +W DL V L GH
Sbjct: 134 -----HTDWVNSVAFSPDGTFVASSSQDGTIKLW---------DLRTGKC---VATLTGH 176
Query: 280 GYEIYSLAASHDGTLLASAC 299
E+ S+A S DG L S+
Sbjct: 177 TGEVNSVAFSPDGEKLLSSS 196
Score = 61.2 bits (149), Expect = 8e-11
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 170 IQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRII 229
+TL H +T +AFSPD L + S D ++ ++ L +T H +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-------RTLKGHTGPV 54
Query: 230 WGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAAS 289
VA S D Y + S D +W DL V+ L GH + S+A S
Sbjct: 55 RDVAASADGTYLASGSSDKTIRLW---------DLETGEC---VRTLTGHTSYVSSVAFS 102
Query: 290 HDGTLLASA 298
DG +L+S+
Sbjct: 103 PDGRILSSS 111
Score = 45.8 bits (109), Expect = 1e-05
Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 33/135 (24%)
Query: 8 VVNGEGGKVLYTLTNHKSKVMAVKWNGEG-------------------GKVLYTLTNHKS 48
+ + GK + TLT H +V +V ++ +G GK L TL H++
Sbjct: 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220
Query: 49 KVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNY--LPYH------MRDDSKQL 100
V +V + P+ L S S D T +W + L H +
Sbjct: 221 GVNSVAF------SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274
Query: 101 HLLSCSMDKSIIVWA 115
L S S D +I +W
Sbjct: 275 RLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 68.2 bits (165), Expect = 8e-13
Identities = 70/306 (22%), Positives = 115/306 (37%), Gaps = 45/306 (14%)
Query: 7 DVVNGEGGKVLYTLTNHKSKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHK 66
+ GK+L + ++ + W+ GK L TL H V ++ + + L
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIK--LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL---- 213
Query: 67 DLVSCSLDKTAILWKYVSE---GNYLPYHMRDDSKQLH-----LLSCSMDKSIIVWAPDP 118
+ S S D T LW + + L H L S S D +I +W
Sbjct: 214 -IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRS 272
Query: 119 TTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIAHGFQGSLHL-DVTTWKQIQ--TLPC 175
++ L + G++ F P G + + G++ L D+ T K + TL
Sbjct: 273 SSSLLRTLS------GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326
Query: 176 HQLTITQLAFSPDDTHLV-SVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAW 234
H+ ++ L+FSPD + LV S D L+ ++ L + + V++
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN--------VLSVSF 378
Query: 235 SHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAASHDGTL 294
S D R + S DG +W + T ++ L GH + SL S DG
Sbjct: 379 SPDGRVVSSGSTDGTVRLW---DLSTGS---------LLRNLDGHTSRVTSLDFSPDGKS 426
Query: 295 LASACK 300
LAS
Sbjct: 427 LASGSS 432
Score = 62.0 bits (149), Expect = 1e-10
Identities = 70/288 (24%), Positives = 104/288 (36%), Gaps = 40/288 (13%)
Query: 25 SKVMAVKWNGEGGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVS 84
+ + + H S V + S D L S SLD T LW +
Sbjct: 87 GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS---SPDGNSILLASSSLDGTVKLWDLST 143
Query: 85 EG---NYLPYH-------MRDDSKQLHLLSCSMDKSIIVWAPDPTTGLWLETARVGEVGG 134
G L H +L S+D +I +W L G
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-------G 196
Query: 135 NTLGFYGCKFGPRGDYIIA-HGFQGSLHL-DVTTWKQIQ-TLPCHQLTITQLAFSPDDTH 191
+T F P G +IA G++ L D++T K ++ TL H ++ +FSPD +
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSL 255
Query: 192 LVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCV 251
L S S D L+ +SS L +T H + VA+S D + + S DG
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLL------RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309
Query: 252 VWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLAASHDGTLLASAC 299
+W ++ L GH + SL+ S DG+LL S
Sbjct: 310 LW----------DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347
Score = 43.5 bits (101), Expect = 9e-05
Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 10/192 (5%)
Query: 36 GGKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWKYVSEGNYLPYHMRD 95
+L TL+ H S V++V + P+ K L S S D T LW + ++
Sbjct: 273 SSSLLRTLSGHSSSVLSVAF------SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326
Query: 96 DSKQLHLLSCSMDKSIIVWA--PDPTTGLWLETARVGEVGGNTLGFYGCKFGPRGDYIIA 153
+ LS S D S++V D T LW +++
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVS 386
Query: 154 HGF-QGSLHL-DVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGR 211
G G++ L D++T ++ L H +T L FSPD L S S D L+ ++S +
Sbjct: 387 SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
Query: 212 LSLVACSDKTNG 223
+ K
Sbjct: 447 SVSFSPDGKVLA 458
Score = 39.3 bits (90), Expect = 0.002
Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 19/134 (14%)
Query: 171 QTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLSLVACSDKTNGVHKRIIW 230
L H+ +IT +AFSPD L+S S D + L+ G+H +
Sbjct: 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGT--IKLWDLDNGEKLIK---SLEGLHDSSVS 113
Query: 231 GVAW-SHDSRYFLTI--SRDGVCVVWGLGEPPTEEDLVQNTLWPEVQKLYGHGYEIYSLA 287
+A S D L S DG +W L +T ++ L GH + SLA
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDL-----------STPGKLIRTLEGHSESVTSLA 162
Query: 288 ASHDGTLLASACKA 301
S DG LLAS
Sbjct: 163 FSPDGKLLASGSSL 176
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 39.6 bits (93), Expect = 6e-05
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 166 TWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYK 205
+ + ++TL H +T +AFSPD +L S S D L+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 36.1 bits (84), Expect = 8e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 225 HKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
H + VA+S D +Y + S DG +W
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 34.6 bits (80), Expect = 0.003
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 37 GKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWK 81
G++L TL H V +V + P+ K L S S D T LW
Sbjct: 2 GELLKTLKGHTGPVTSVAF------SPDGKYLASGSDDGTIKLWD 40
Score = 30.0 bits (68), Expect = 0.14
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 270 WPEVQKLYGHGYEIYSLAASHDGTLLASACK 300
++ L GH + S+A S DG LAS
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSD 32
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 36.6 bits (85), Expect = 5e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 167 WKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDR 199
K ++TL H +T +AFSPD L S S D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDG 33
Score = 35.4 bits (82), Expect = 0.001
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 37 GKVLYTLTNHKSKVMAVKWVLNTSLDPEHKDLVSCSLDKTAILWK 81
GK+L TL H V +V + P+ L S S D T +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAF------SPDGNLLASGSDDGTVRVWD 39
Score = 35.0 bits (81), Expect = 0.002
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 225 HKRIIWGVAWSHDSRYFLTISRDGVCVVW 253
H + VA+S D + S DG VW
Sbjct: 10 HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 30.0 bits (68), Expect = 0.13
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 270 WPEVQKLYGHGYEIYSLAASHDGTLLASACK 300
++ L GH + S+A S DG LLAS
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSD 31
>gnl|CDD|235472 PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate
reductoisomerase; Provisional.
Length = 385
Score = 33.5 bits (78), Expect = 0.12
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 266 QNTLWPEVQKLYGHGYEIYSLAASHDGTLLASACKATKPEHAAI 309
TL +V + + + +L+A + LLA + +P++ +
Sbjct: 15 TQTL--DVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVV 56
>gnl|CDD|217176 pfam02670, DXP_reductoisom, 1-deoxy-D-xylulose 5-phosphate
reductoisomerase. This is a family of
1-deoxy-D-xylulose 5-phosphate reductoisomerases. This
enzyme catalyzes the formation of
2-C-methyl-D-erythritol 4-phosphate from
1-deoxy-D-xylulose-5-phosphate in the presence of NADPH.
This reaction is part of the terpenoid biosynthesis
pathway.
Length = 129
Score = 32.1 bits (74), Expect = 0.13
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 266 QNTLWPEVQKLYGHGYEIYSLAASHDGTLLASACKATKPEHAAI 309
TL +V + +E+ +L+A + LLA K KP++ A+
Sbjct: 12 TQTL--DVIRRNPDRFEVVALSAGRNVELLAEQIKEFKPKYVAV 53
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 29.6 bits (66), Expect = 2.1
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 26/89 (29%)
Query: 143 KFGPRGDYIIAHGFQGSLHLDVTTWKQ------IQTLPCHQLTITQL------------- 183
KF G YI++ + L V W I+T+P H + +L
Sbjct: 287 KFSDNGRYILSRDY-----LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341
Query: 184 --AFSPDDTHLVSVSRDRRWGLYKRQSSG 210
+FS DD H++S S +G+Y SSG
Sbjct: 342 EISFSGDDKHVLSGSYSNNFGIYPTDSSG 370
>gnl|CDD|217449 pfam03242, LEA_3, Late embryogenesis abundant protein. Members of
this family are similar to late embryogenesis abundant
proteins. Members of the family have been isolated in a
number of different screens. However, the molecular
function of these proteins remains obscure.
Length = 94
Score = 27.5 bits (61), Expect = 2.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 114 WAPDPTTGLWLETARVGEV 132
W PDP TG + E+
Sbjct: 65 WVPDPVTGYYRPENHANEI 83
>gnl|CDD|162945 TIGR02604, Piru_Ver_Nterm, putative membrane-bound dehydrogenase
domain. All proteins that score above the trusted
cutoff score of 45 to this model are large proteins of
either Pirellula sp. 1 or Verrucomicrobium spinosum.
These proteins all contain, in addition to this domain,
several hundred residues of highly variable sequence,
and then a well-conserved C-terminal domain (TIGR02603)
that features a putative cytochrome c-type heme binding
motif CXXCH. The membrane-bound L-sorbosone
dehydrogenase from Acetobacter liquefaciens
(Gluconacetobacter liquefaciens) (SP|Q44091) is
homologous to this domain but lacks additional sequence
regions shared by members of this family and belongs to
a different clade of the larger family of homologs. It
and its closely related homologs are excluded from the
this model by scoring between the trusted (45) and noise
(18) cutoffs.
Length = 367
Score = 29.3 bits (66), Expect = 2.9
Identities = 28/123 (22%), Positives = 38/123 (30%), Gaps = 23/123 (18%)
Query: 151 IIAHGFQGSLHLDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQS-S 209
++AHGFQ V +W + DD L V+ G QS +
Sbjct: 178 VVAHGFQNPYGHSVDSWGDV------------FFCDNDDPPLCRVTPVAEGGRNGYQSFN 225
Query: 210 GRLSLVACSDKTNGVHKRIIWGVAWSHDSRYFLTISRDGVCVVWGLGEPPTEEDLVQNTL 269
GR A H+ + W D R T+ V G G P +
Sbjct: 226 GRRYDHA---DRGADHE--VPTGEWRQDDRGVETVGD-----VAGGGTAPCGIAFYRGDA 275
Query: 270 WPE 272
PE
Sbjct: 276 LPE 278
>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional.
Length = 433
Score = 28.5 bits (64), Expect = 4.9
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 184 AFSPDDTHLVSVS-RDRRWGLYKRQ-SSGRLSLVACSDKTNGVHKRIIWGVAWSHD-SRY 240
A+SPD L VS R +Y + ++G+ LVA NG ++S D R
Sbjct: 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-------APSFSPDGRRL 262
Query: 241 FLTISRDG 248
LT+SRDG
Sbjct: 263 ALTLSRDG 270
>gnl|CDD|216201 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal
region. This family is an alignment of the region to
the N-terminal side of the active site. The Prosite
motif does not correspond to this Pfam entry.
Length = 348
Score = 28.4 bits (64), Expect = 5.0
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 154 HGFQGSLHLDVTTWKQIQTLPCHQLTITQLAFSPDDTHLVSVSRDRRWGLYKRQSSGRLS 213
H + S ++ ++ LP + I +SPD L V R LY R+ +
Sbjct: 19 HSYTASYYIYDLETGTVEPLPPGEGKIQYAKWSPDGHKLAYV---RDNNLYVRELATGKE 75
Query: 214 LVACSDKTNGVHKRII-W-----------GVAWSHDSRYFLTISRD 247
SD +NG+ + W WS D + D
Sbjct: 76 TQITSDGSNGIFNGLADWVYEEEVFGSNSAYWWSPDGSRLAFLRFD 121
>gnl|CDD|182156 PRK09939, PRK09939, putative oxidoreductase; Provisional.
Length = 759
Score = 28.1 bits (62), Expect = 7.8
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 187 PDDTHLVSVSRDRRWGLYKRQSSGRLSLVACS----DKTNGVHKRIIWGVAWSHDSRYFL 242
P HL++ + +RRW SG+ + + D ++ + +++ SHD +Y
Sbjct: 601 PGGFHLINAAAERRW----MTPSGKANFITSKGLLEDPSSAFNSKLVMATVRSHD-QYNT 655
Query: 243 TI 244
TI
Sbjct: 656 TI 657
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 27.5 bits (62), Expect = 8.7
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 87 NYLPYHMRDDSKQLHLLSCSMDKSIIVWA---PDPTTGL 122
N L +R + L++ ++D++++V+A PD +T L
Sbjct: 64 NLL---VRPPIFKSKLIAANVDQAVLVFAAKEPDFSTDL 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.436
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,556,132
Number of extensions: 1425960
Number of successful extensions: 1107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 40
Length of query: 312
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 215
Effective length of database: 6,635,264
Effective search space: 1426581760
Effective search space used: 1426581760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)