BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15193
(106 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242025524|ref|XP_002433174.1| Negative elongation factor E, putative [Pediculus humanus corporis]
gi|212518715|gb|EEB20436.1| Negative elongation factor E, putative [Pediculus humanus corporis]
Length = 273
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 49/62 (79%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G+ V GV+LKVSLARRQ V INDA+SS+TWS IA S KGNHKDKR ++Y++D
Sbjct: 211 EMDGSMVSGVQLKVSLARRQPVVEAINDASSSSTWSTIAASHSQKGNHKDKRDVIVYEED 270
Query: 87 IF 88
+F
Sbjct: 271 LF 272
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 1 MVYIHFPSNHTEEEITLQA 19
MVY+HFPSN TEEE+ LQA
Sbjct: 1 MVYLHFPSNLTEEELMLQA 19
>gi|321457448|gb|EFX68534.1| hypothetical protein DAPPUDRAFT_301427 [Daphnia pulex]
Length = 277
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 48/62 (77%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
++NG+ V G++LKVSLARRQ + PINDA+SS TWS IA S KG++KDKR V Y+++
Sbjct: 216 EMNGSMVSGIQLKVSLARRQPVIEPINDASSSATWSTIAARNSQKGSYKDKRDLVTYEEE 275
Query: 87 IF 88
+F
Sbjct: 276 LF 277
>gi|91078286|ref|XP_971953.1| PREDICTED: similar to Negative elongation factor E CG5994-PA
[Tribolium castaneum]
gi|270003949|gb|EFA00397.1| hypothetical protein TcasGA2_TC003247 [Tribolium castaneum]
Length = 270
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 46/59 (77%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDD 85
+++G+ V G++LKV+LARRQ ++ PINDA+SS W+ +A S KGNH+DKR+ V YDD
Sbjct: 209 EMDGSMVSGIQLKVTLARRQPQIEPINDASSSAAWATLASSHSQKGNHRDKRNLVSYDD 267
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 1 MVYIHFPSNHTEEEITL 17
MVYIHFP+N TEEE+ L
Sbjct: 1 MVYIHFPANFTEEELML 17
>gi|157133920|ref|XP_001663073.1| hypothetical protein AaeL_AAEL003077 [Aedes aegypti]
gi|108881442|gb|EAT45667.1| AAEL003077-PA [Aedes aegypti]
Length = 279
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 33 VQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYD-DDIF 88
V G++L+V LARRQ ++ PINDA SS+TWSA+A ++S KG HKD R V YD DDIF
Sbjct: 223 VGGIQLQVQLARRQPQINPINDAGSSSTWSALATYRSQKGKHKDNRELVCYDHDDIF 279
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 1 MVYIHFPSNHTEEEITL 17
MVYIHFPSN TEEE+ L
Sbjct: 1 MVYIHFPSNLTEEELML 17
>gi|194865848|ref|XP_001971633.1| GG15071 [Drosophila erecta]
gi|190653416|gb|EDV50659.1| GG15071 [Drosophila erecta]
Length = 280
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277
Query: 87 IF 88
Sbjct: 278 FL 279
>gi|195326059|ref|XP_002029748.1| GM24927 [Drosophila sechellia]
gi|194118691|gb|EDW40734.1| GM24927 [Drosophila sechellia]
Length = 280
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277
Query: 87 IF 88
Sbjct: 278 FL 279
>gi|195491140|ref|XP_002093434.1| GE21294 [Drosophila yakuba]
gi|194179535|gb|EDW93146.1| GE21294 [Drosophila yakuba]
Length = 280
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277
Query: 87 IF 88
Sbjct: 278 FL 279
>gi|24661022|ref|NP_648241.1| negative elongation factor E [Drosophila melanogaster]
gi|38372288|sp|P92204.1|NELFE_DROME RecName: Full=Negative elongation factor E
gi|1749772|emb|CAA71123.1| ANON-66Da protein [Drosophila melanogaster]
gi|1749776|emb|CAA71120.1| ANON-66Da protein [Drosophila melanogaster]
gi|7295068|gb|AAF50394.1| negative elongation factor E [Drosophila melanogaster]
gi|17945251|gb|AAL48683.1| RE14181p [Drosophila melanogaster]
gi|220947970|gb|ACL86528.1| Nelf-E-PA [synthetic construct]
gi|220957250|gb|ACL91168.1| Nelf-E-PA [synthetic construct]
Length = 280
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277
Query: 87 IF 88
Sbjct: 278 FL 279
>gi|195125830|ref|XP_002007378.1| GI12420 [Drosophila mojavensis]
gi|193918987|gb|EDW17854.1| GI12420 [Drosophila mojavensis]
Length = 281
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V YDDD
Sbjct: 219 EMHGKNVNGIVLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDLRQMVQYDDD 278
Query: 87 IF 88
Sbjct: 279 FL 280
>gi|225717970|gb|ACO14831.1| Negative elongation factor E [Caligus clemensi]
Length = 294
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 31 THVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 88
T G+++KVS ARRQ++V PINDA+SS TWS+IA S KG DKR+ VIYD++IF
Sbjct: 237 TTTHGIQIKVSKARRQIQVDPINDASSSATWSSIAASHSQKGAFSDKRNLVIYDEEIF 294
>gi|195588803|ref|XP_002084147.1| GD12975 [Drosophila simulans]
gi|194196156|gb|EDX09732.1| GD12975 [Drosophila simulans]
Length = 418
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V YD+D
Sbjct: 356 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 415
Query: 87 IF 88
Sbjct: 416 FL 417
>gi|170027620|ref|XP_001841695.1| negative elongation factor E [Culex quinquefasciatus]
gi|167862265|gb|EDS25648.1| negative elongation factor E [Culex quinquefasciatus]
Length = 281
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 19 AKYQKLKRKVNGTH---VQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHK 75
+K + R ++ H V G++L+V LARRQ ++ PINDA SS WSA+A ++S KG HK
Sbjct: 208 SKTESADRAISDLHSKTVGGIQLQVQLARRQPQINPINDAGSSAAWSALATNRSQKGKHK 267
Query: 76 DKRHQVIYD-DDIF 88
D R V YD DDIF
Sbjct: 268 DNRELVCYDHDDIF 281
>gi|158295598|ref|XP_316305.4| AGAP006237-PA [Anopheles gambiae str. PEST]
gi|157016115|gb|EAA10770.4| AGAP006237-PA [Anopheles gambiae str. PEST]
Length = 275
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 33 VQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYD-DDIF 88
V G++L+V LARRQ ++ PINDA SS WSA+A ++S KG HKD R V YD DDIF
Sbjct: 219 VGGIQLQVQLARRQPQINPINDAGSSAVWSALATNRSQKGKHKDNRELVCYDHDDIF 275
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/18 (83%), Positives = 16/18 (88%)
Query: 1 MVYIHFPSNHTEEEITLQ 18
MVYIHFPSN TEEE+ LQ
Sbjct: 1 MVYIHFPSNLTEEELMLQ 18
>gi|125978160|ref|XP_001353113.1| GA19284 [Drosophila pseudoobscura pseudoobscura]
gi|195173466|ref|XP_002027512.1| GL10297 [Drosophila persimilis]
gi|54641864|gb|EAL30614.1| GA19284 [Drosophila pseudoobscura pseudoobscura]
gi|194114413|gb|EDW36456.1| GL10297 [Drosophila persimilis]
Length = 282
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V Y+DD
Sbjct: 220 EMHGKNVTGIVLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVKYNDD 279
Query: 87 IF 88
Sbjct: 280 FL 281
>gi|38372380|sp|Q95ZE9.1|NELFE_DROVI RecName: Full=Negative elongation factor E
gi|14422299|emb|CAC41628.1| hypothetical protein [Drosophila virilis]
Length = 281
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V Y+DD
Sbjct: 219 EMHGKSVTGIVLQVQLARRQPQIVPINDASSSAVWSSIAASKSQKGSHKDLRQMVQYNDD 278
Query: 87 IF 88
Sbjct: 279 FL 280
>gi|195375929|ref|XP_002046750.1| Nelf-E [Drosophila virilis]
gi|194153908|gb|EDW69092.1| Nelf-E [Drosophila virilis]
Length = 281
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V Y+DD
Sbjct: 219 EMHGKSVTGIVLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDLRQMVQYNDD 278
Query: 87 IF 88
Sbjct: 279 FL 280
>gi|195435816|ref|XP_002065875.1| GK20547 [Drosophila willistoni]
gi|194161960|gb|EDW76861.1| GK20547 [Drosophila willistoni]
Length = 279
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V Y++D
Sbjct: 217 EMHGKSVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYNED 276
Query: 87 IF 88
Sbjct: 277 FL 278
>gi|195013756|ref|XP_001983899.1| GH16149 [Drosophila grimshawi]
gi|193897381|gb|EDV96247.1| GH16149 [Drosophila grimshawi]
Length = 281
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G + + L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD+R V Y+DD
Sbjct: 219 EMHGKSINSIVLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDQRQMVQYNDD 278
Query: 87 IF 88
Sbjct: 279 FL 280
>gi|312378489|gb|EFR25051.1| hypothetical protein AND_09950 [Anopheles darlingi]
Length = 298
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 33 VQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYD-DDIF 88
V G+ L+V LARRQ +++PIN+A SS WSA+A ++S KG HKD R V YD +D+F
Sbjct: 242 VGGILLQVQLARRQPQISPINEAGSSAVWSALATNRSQKGKHKDNRELVCYDHEDVF 298
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 21/25 (84%)
Query: 1 MVYIHFPSNHTEEEITLQAKYQKLK 25
MVYIHFPSN TEEE+ LQAKY L+
Sbjct: 1 MVYIHFPSNLTEEELMLQAKYAMLR 25
>gi|194748947|ref|XP_001956902.1| GF10157 [Drosophila ananassae]
gi|190624184|gb|EDV39708.1| GF10157 [Drosophila ananassae]
Length = 281
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ INDA+SS WS+IA +S KG+HKD R V Y++D
Sbjct: 219 EMHGKNVNGINLQVQLARRQPQIEAINDASSSAVWSSIAASKSQKGSHKDHREMVHYNED 278
Query: 87 IF 88
Sbjct: 279 FL 280
>gi|332023297|gb|EGI63551.1| Negative elongation factor E [Acromyrmex echinatior]
Length = 271
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G+ V ++LKVSLARRQ + P++D SS+ WS IA + S K HKD+R +Y++D
Sbjct: 209 EMDGSMVSSIQLKVSLARRQPIIEPVSDTMSSSMWSPIAANYSQKSAHKDRRELKVYEED 268
Query: 87 IF 88
+F
Sbjct: 269 LF 270
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 16/18 (88%)
Query: 1 MVYIHFPSNHTEEEITLQ 18
MVY+HFPSN TEEE+ LQ
Sbjct: 1 MVYLHFPSNLTEEELMLQ 18
>gi|350396568|ref|XP_003484595.1| PREDICTED: negative elongation factor E-like [Bombus impatiens]
Length = 275
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G+ V ++LKVSLARRQ + + DA SS+ WS IA + S K HKD+R ++Y++D
Sbjct: 213 EMDGSMVSSIQLKVSLARRQPIIEAMTDATSSSMWSPIAANYSQKSAHKDRRDLIVYEED 272
Query: 87 IF 88
+F
Sbjct: 273 LF 274
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 1 MVYIHFPSNHTEEEITLQA 19
MVY+HFPSN TEEE+ LQA
Sbjct: 4 MVYLHFPSNLTEEELMLQA 22
>gi|340716737|ref|XP_003396851.1| PREDICTED: negative elongation factor E-like [Bombus terrestris]
Length = 275
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G+ V ++LKVSLARRQ + + DA SS+ WS IA + S K HKD+R ++Y++D
Sbjct: 213 EMDGSMVSSIQLKVSLARRQPIIEAMTDATSSSMWSPIAANYSQKSAHKDRRDLIVYEED 272
Query: 87 IF 88
+F
Sbjct: 273 LF 274
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 1 MVYIHFPSNHTEEEITLQA 19
MVY+HFPSN TEEE+ LQA
Sbjct: 4 MVYLHFPSNLTEEELMLQA 22
>gi|307176913|gb|EFN66240.1| Negative elongation factor E [Camponotus floridanus]
Length = 271
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G+ V ++LKVSLARRQ + P++D SS+ WS IA + S K HKD+R +Y++D
Sbjct: 209 EMDGSMVSSIQLKVSLARRQPIIEPVSDTMSSSMWSPIAANYSQKSAHKDRRDLKVYEED 268
Query: 87 IF 88
+F
Sbjct: 269 LF 270
Score = 34.7 bits (78), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 1 MVYIHFPSNHTEEEITLQAKYQ 22
MVY+HFPS+ TEEE+ LQAKY
Sbjct: 1 MVYLHFPSSLTEEELMLQAKYN 22
>gi|363743130|ref|XP_003642781.1| PREDICTED: negative elongation factor E-like [Gallus gallus]
Length = 310
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 5/64 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTT-WSAIACHQSLKGNHKDKRHQVIYDD 85
++NG VQ V+L+VS+AR+Q P+ DAA+ + W ++A S KG+H+DKR QV+Y++
Sbjct: 249 ELNGAVVQDVQLRVSIARKQ----PLLDAATGKSLWGSLAVKNSAKGSHRDKRAQVVYNE 304
Query: 86 DIFG 89
D+FG
Sbjct: 305 DLFG 308
>gi|327266490|ref|XP_003218038.1| PREDICTED: negative elongation factor E-like [Anolis carolinensis]
Length = 359
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 47/63 (74%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NG V+ ++LKVS+AR+Q P+ DAA+ + W ++A S+KG+H+DKR QVIY++
Sbjct: 301 ELNGKVVEDIQLKVSIARKQ----PMLDAATGKSVWGSLAVRNSVKGSHRDKRSQVIYNE 356
Query: 86 DIF 88
DIF
Sbjct: 357 DIF 359
>gi|380018252|ref|XP_003693047.1| PREDICTED: negative elongation factor E-like [Apis florea]
Length = 275
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G+ V ++LKVSLARRQ + + DA SS+ WS IA + S K HKD+R +Y++D
Sbjct: 213 EMDGSMVSSIQLKVSLARRQPIIESMTDATSSSMWSPIAANYSQKSAHKDRRDLKVYEED 272
Query: 87 IF 88
+F
Sbjct: 273 LF 274
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 1 MVYIHFPSNHTEEEITLQA 19
MVY+HFPSN TEEE+ LQA
Sbjct: 4 MVYLHFPSNLTEEELMLQA 22
>gi|328790245|ref|XP_394669.2| PREDICTED: negative elongation factor E [Apis mellifera]
Length = 275
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G+ V ++LKVSLARRQ + + DA SS+ WS IA + S K HKD+R +Y++D
Sbjct: 213 EMDGSMVSSIQLKVSLARRQPIIESMTDATSSSMWSPIAANYSQKSAHKDRRDLKVYEED 272
Query: 87 IF 88
+F
Sbjct: 273 LF 274
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 1 MVYIHFPSNHTEEEITLQA 19
MVY+HFPSN TEEE+ LQA
Sbjct: 4 MVYLHFPSNLTEEELMLQA 22
>gi|326933589|ref|XP_003212884.1| PREDICTED: negative elongation factor E-like [Meleagris gallopavo]
Length = 271
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 5/64 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTT-WSAIACHQSLKGNHKDKRHQVIYDD 85
++NG VQ V+L+VS+AR+Q P+ DAA+ + W A S KG+H+DKR QV+Y++
Sbjct: 210 ELNGAVVQDVQLRVSIARKQ----PLLDAATGKSLWGTTAVKNSAKGSHRDKRAQVVYNE 265
Query: 86 DIFG 89
D+FG
Sbjct: 266 DLFG 269
>gi|194374161|dbj|BAG62393.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 284 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 339
Query: 86 DIFGE 90
D++ E
Sbjct: 340 DVYKE 344
>gi|397523113|ref|XP_003831586.1| PREDICTED: negative elongation factor E isoform 3 [Pan paniscus]
Length = 352
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 286 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 341
Query: 86 DIFGE 90
D++ E
Sbjct: 342 DVYKE 346
>gi|351713164|gb|EHB16083.1| Negative elongation factor E [Heterocephalus glaber]
Length = 342
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 276 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 331
Query: 86 DIFGE 90
D++ E
Sbjct: 332 DVYKE 336
>gi|426352527|ref|XP_004043763.1| PREDICTED: negative elongation factor E isoform 3 [Gorilla gorilla
gorilla]
Length = 348
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 282 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 337
Query: 86 DIFGE 90
D++ E
Sbjct: 338 DVYKE 342
>gi|297290491|ref|XP_001113834.2| PREDICTED: negative elongation factor E isoform 2 [Macaca mulatta]
Length = 350
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 284 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 339
Query: 86 DIFGE 90
D++ E
Sbjct: 340 DVYKE 344
>gi|297677759|ref|XP_002816722.1| PREDICTED: negative elongation factor E isoform 2 [Pongo abelii]
Length = 352
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 286 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 341
Query: 86 DIFGE 90
D++ E
Sbjct: 342 DVYKE 346
>gi|332823612|ref|XP_003311228.1| PREDICTED: negative elongation factor E isoform 2 [Pan troglodytes]
Length = 352
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 286 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 341
Query: 86 DIFGE 90
D++ E
Sbjct: 342 DVYKE 346
>gi|432089455|gb|ELK23397.1| Negative elongation factor E [Myotis davidii]
Length = 440
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y+D
Sbjct: 374 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYND 429
Query: 86 DIFGE 90
D++ E
Sbjct: 430 DVYKE 434
>gi|146332117|gb|ABQ22564.1| negative elongation factor E-like protein [Callithrix jacchus]
Length = 218
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 152 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 207
Query: 86 DIFGE 90
D++ E
Sbjct: 208 DVYKE 212
>gi|148694799|gb|EDL26746.1| RD RNA-binding protein, isoform CRA_b [Mus musculus]
Length = 313
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 256 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 311
Query: 86 DI 87
D+
Sbjct: 312 DL 313
>gi|440907636|gb|ELR57757.1| Negative elongation factor E, partial [Bos grunniens mutus]
Length = 373
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 307 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 362
Query: 86 DIFGE 90
D++ E
Sbjct: 363 DVYKE 367
>gi|115495421|ref|NP_001069672.1| negative elongation factor E [Bos taurus]
gi|122146333|sp|Q0V898.1|NELFE_BOVIN RecName: Full=Negative elongation factor E; Short=NELF-E; AltName:
Full=RNA-binding protein RD
gi|110665662|gb|ABG81477.1| RD RNA-binding protein [Bos taurus]
gi|111304919|gb|AAI20073.1| RD RNA binding protein [Bos taurus]
gi|296474276|tpg|DAA16391.1| TPA: negative elongation factor E [Bos taurus]
Length = 374
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 308 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 363
Query: 86 DIFGE 90
D++ E
Sbjct: 364 DVYKE 368
>gi|395533839|ref|XP_003768960.1| PREDICTED: negative elongation factor E [Sarcophilus harrisii]
Length = 386
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 48/65 (73%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ ++ W ++A S KG H+DKR Q++Y+D
Sbjct: 320 ELNGTKVESVQLKVSIARKQ----PMLDAATGNSVWGSLAVQSSPKGCHRDKRTQIVYND 375
Query: 86 DIFGE 90
D++ E
Sbjct: 376 DVYKE 380
>gi|426250505|ref|XP_004018976.1| PREDICTED: negative elongation factor E isoform 1 [Ovis aries]
Length = 370
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 304 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 359
Query: 86 DIFGE 90
D++ E
Sbjct: 360 DVYKE 364
>gi|126309585|ref|XP_001368988.1| PREDICTED: hypothetical protein LOC100023768 isoform 1 [Monodelphis
domestica]
Length = 400
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 48/65 (73%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ ++ W ++A S KG H+DKR Q++Y+D
Sbjct: 334 ELNGTKVESVQLKVSIARKQ----PMLDAATGNSVWGSLAVQSSPKGCHRDKRTQIVYND 389
Query: 86 DIFGE 90
D++ E
Sbjct: 390 DVYKE 394
>gi|431921549|gb|ELK18903.1| Negative elongation factor E [Pteropus alecto]
Length = 374
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 308 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 363
Query: 86 DIFGE 90
D++ E
Sbjct: 364 DVYKE 368
>gi|156120154|ref|NP_001095295.1| negative elongation factor E [Sus scrofa]
gi|148724907|emb|CAN87695.1| RD RNA binding protein [Sus scrofa]
Length = 378
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 312 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 367
Query: 86 DIFGE 90
D++ E
Sbjct: 368 DVYKE 372
>gi|148724908|emb|CAN87696.1| RD RNA binding protein [Sus scrofa]
Length = 373
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 307 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 362
Query: 86 DIFGE 90
D++ E
Sbjct: 363 DVYKE 367
>gi|57094373|ref|XP_532087.1| PREDICTED: negative elongation factor E isoform 2 [Canis lupus
familiaris]
Length = 374
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 308 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 363
Query: 86 DIFGE 90
D++ E
Sbjct: 364 DVYKE 368
>gi|410958800|ref|XP_003986002.1| PREDICTED: negative elongation factor E isoform 1 [Felis catus]
gi|410958802|ref|XP_003986003.1| PREDICTED: negative elongation factor E isoform 2 [Felis catus]
Length = 380
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 314 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369
Query: 86 DIFGE 90
D++ E
Sbjct: 370 DVYKE 374
>gi|301788520|ref|XP_002929676.1| PREDICTED: negative elongation factor E-like [Ailuropoda
melanoleuca]
Length = 382
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 316 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 371
Query: 86 DIFGE 90
D++ E
Sbjct: 372 DVYKE 376
>gi|426250507|ref|XP_004018977.1| PREDICTED: negative elongation factor E isoform 2 [Ovis aries]
Length = 340
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 274 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 329
Query: 86 DIFGE 90
D++ E
Sbjct: 330 DVYKE 334
>gi|149732070|ref|XP_001492762.1| PREDICTED: negative elongation factor E-like [Equus caballus]
Length = 382
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 316 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 371
Query: 86 DIFGE 90
D++ E
Sbjct: 372 DVYKE 376
>gi|307202249|gb|EFN81733.1| Negative elongation factor E [Harpegnathos saltator]
Length = 272
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G+ V ++LKVSLARRQ + P+ D SS+ WS IA + S K HKD+R +Y++D
Sbjct: 211 EMDGSMVSSIQLKVSLARRQPIIEPVTDM-SSSMWSPIAANYSQKSVHKDRRDLKVYEED 269
Query: 87 IF 88
+F
Sbjct: 270 LF 271
>gi|354492829|ref|XP_003508547.1| PREDICTED: negative elongation factor E-like [Cricetulus griseus]
Length = 376
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 319 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 374
Query: 86 DI 87
D+
Sbjct: 375 DL 376
>gi|410958804|ref|XP_003986004.1| PREDICTED: negative elongation factor E isoform 3 [Felis catus]
Length = 350
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 284 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 339
Query: 86 DIFGE 90
D++ E
Sbjct: 340 DVYKE 344
>gi|345778400|ref|XP_003431725.1| PREDICTED: negative elongation factor E isoform 1 [Canis lupus
familiaris]
Length = 344
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 278 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 333
Query: 86 DIFGE 90
D++ E
Sbjct: 334 DVYKE 338
>gi|348519377|ref|XP_003447207.1| PREDICTED: hypothetical protein LOC100705150 [Oreochromis
niloticus]
Length = 356
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V V +KVS+AR+Q P+ DAA+ + W+++A S KG+++DKR+QV+Y +
Sbjct: 296 ELNGTTVGDVHIKVSIARKQ----PMLDAATGKSVWASLAVQNSTKGSYRDKRNQVVYSE 351
Query: 86 DIF 88
D+F
Sbjct: 352 DLF 354
>gi|281345622|gb|EFB21206.1| hypothetical protein PANDA_019914 [Ailuropoda melanoleuca]
Length = 358
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 292 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 347
Query: 86 DIFGE 90
D++ E
Sbjct: 348 DVYKE 352
>gi|291395819|ref|XP_002714359.1| PREDICTED: RD RNA-binding protein [Oryctolagus cuniculus]
Length = 388
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y+D
Sbjct: 322 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYND 377
Query: 86 DIFGE 90
D++ E
Sbjct: 378 DVYKE 382
>gi|441594538|ref|XP_003271972.2| PREDICTED: negative elongation factor E [Nomascus leucogenys]
Length = 331
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 265 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 320
Query: 86 DIFGE 90
D++ E
Sbjct: 321 DVYKE 325
>gi|296197762|ref|XP_002746415.1| PREDICTED: negative elongation factor E [Callithrix jacchus]
Length = 386
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 320 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 375
Query: 86 DIFGE 90
D++ E
Sbjct: 376 DVYKE 380
>gi|410925192|ref|XP_003976065.1| PREDICTED: negative elongation factor E-like [Takifugu rubripes]
Length = 343
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 47/63 (74%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NG+ V + +KVS+AR+Q P+ DAA+ + W+++A S KG+++DKR+QV+Y++
Sbjct: 285 ELNGSTVGDIYIKVSIARKQ----PMLDAATGKSVWASLAVQNSTKGSYRDKRNQVVYNE 340
Query: 86 DIF 88
D+F
Sbjct: 341 DLF 343
>gi|402866535|ref|XP_003897435.1| PREDICTED: negative elongation factor E [Papio anubis]
Length = 393
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 327 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 382
Query: 86 DIFGE 90
D++ E
Sbjct: 383 DVYKE 387
>gi|383615295|gb|AFH41798.1| negative elongation factor E [Homo sapiens]
Length = 380
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 314 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369
Query: 86 DIFGE 90
D++ E
Sbjct: 370 DVYKE 374
>gi|297290488|ref|XP_002803722.1| PREDICTED: negative elongation factor E [Macaca mulatta]
Length = 387
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 321 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 376
Query: 86 DIFGE 90
D++ E
Sbjct: 377 DVYKE 381
>gi|35913|emb|CAA34231.1| unnamed protein product [Homo sapiens]
Length = 325
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 259 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 314
Query: 86 DIFGE 90
D++ E
Sbjct: 315 DVYKE 319
>gi|344239161|gb|EGV95264.1| Negative elongation factor E [Cricetulus griseus]
Length = 67
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 10 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 65
Query: 86 DI 87
D+
Sbjct: 66 DL 67
>gi|395832057|ref|XP_003789094.1| PREDICTED: negative elongation factor E isoform 1 [Otolemur
garnettii]
gi|395832059|ref|XP_003789095.1| PREDICTED: negative elongation factor E isoform 2 [Otolemur
garnettii]
Length = 380
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 314 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369
Query: 86 DIFGE 90
D++ E
Sbjct: 370 DVYKE 374
>gi|444721129|gb|ELW61882.1| Negative elongation factor E [Tupaia chinensis]
Length = 432
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 366 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 421
Query: 86 DIFGE 90
D++ E
Sbjct: 422 DVYKE 426
>gi|348576450|ref|XP_003474000.1| PREDICTED: negative elongation factor E-like [Cavia porcellus]
Length = 382
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 316 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 371
Query: 86 DIFGE 90
D++ E
Sbjct: 372 DVYKE 376
>gi|344307276|ref|XP_003422308.1| PREDICTED: negative elongation factor E-like [Loxodonta africana]
Length = 380
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 314 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369
Query: 86 DIFGE 90
D++ E
Sbjct: 370 DVYKE 374
>gi|426352525|ref|XP_004043762.1| PREDICTED: negative elongation factor E isoform 2 [Gorilla gorilla
gorilla]
Length = 385
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 319 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 374
Query: 86 DIFGE 90
D++ E
Sbjct: 375 DVYKE 379
>gi|194380248|dbj|BAG63891.1| unnamed protein product [Homo sapiens]
Length = 387
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 321 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 376
Query: 86 DIFGE 90
D++ E
Sbjct: 377 DVYKE 381
>gi|297677761|ref|XP_002816723.1| PREDICTED: negative elongation factor E isoform 3 [Pongo abelii]
Length = 389
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 323 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 378
Query: 86 DIFGE 90
D++ E
Sbjct: 379 DVYKE 383
>gi|397523111|ref|XP_003831585.1| PREDICTED: negative elongation factor E isoform 2 [Pan paniscus]
Length = 389
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 323 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 378
Query: 86 DIFGE 90
D++ E
Sbjct: 379 DVYKE 383
>gi|14670268|ref|NP_002895.3| negative elongation factor E [Homo sapiens]
gi|1350554|sp|P18615.3|NELFE_HUMAN RecName: Full=Negative elongation factor E; Short=NELF-E; AltName:
Full=RNA-binding protein RD
gi|190974|gb|AAC37523.1| RD protein [Homo sapiens]
gi|2347135|gb|AAB67979.1| RD [Homo sapiens]
gi|19263637|gb|AAH25235.1| RD RNA binding protein [Homo sapiens]
gi|29791860|gb|AAH50617.1| RD RNA binding protein [Homo sapiens]
gi|119623958|gb|EAX03553.1| RD RNA binding protein, isoform CRA_c [Homo sapiens]
gi|124000675|gb|ABM87846.1| RD RNA binding protein [synthetic construct]
Length = 380
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 314 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369
Query: 86 DIFGE 90
D++ E
Sbjct: 370 DVYKE 374
>gi|426352523|ref|XP_004043761.1| PREDICTED: negative elongation factor E isoform 1 [Gorilla gorilla
gorilla]
Length = 378
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 312 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 367
Query: 86 DIFGE 90
D++ E
Sbjct: 368 DVYKE 372
>gi|355561556|gb|EHH18188.1| hypothetical protein EGK_14739 [Macaca mulatta]
gi|380816498|gb|AFE80123.1| negative elongation factor E [Macaca mulatta]
gi|383421563|gb|AFH33995.1| negative elongation factor E [Macaca mulatta]
gi|384949418|gb|AFI38314.1| negative elongation factor E [Macaca mulatta]
Length = 382
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 316 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 371
Query: 86 DIFGE 90
D++ E
Sbjct: 372 DVYKE 376
>gi|297677757|ref|XP_002816721.1| PREDICTED: negative elongation factor E isoform 1 [Pongo abelii]
Length = 382
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 316 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 371
Query: 86 DIFGE 90
D++ E
Sbjct: 372 DVYKE 376
>gi|119623957|gb|EAX03552.1| RD RNA binding protein, isoform CRA_b [Homo sapiens]
Length = 336
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 270 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 325
Query: 86 DIFGE 90
D++ E
Sbjct: 326 DVYKE 330
>gi|109070546|ref|XP_001113911.1| PREDICTED: negative elongation factor E isoform 4 [Macaca mulatta]
Length = 380
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 314 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369
Query: 86 DIFGE 90
D++ E
Sbjct: 370 DVYKE 374
>gi|397523109|ref|XP_003831584.1| PREDICTED: negative elongation factor E isoform 1 [Pan paniscus]
Length = 382
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 316 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 371
Query: 86 DIFGE 90
D++ E
Sbjct: 372 DVYKE 376
>gi|332823610|ref|XP_003311227.1| PREDICTED: negative elongation factor E isoform 1 [Pan troglodytes]
Length = 389
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 323 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 378
Query: 86 DIFGE 90
D++ E
Sbjct: 379 DVYKE 383
>gi|332823608|ref|XP_527349.3| PREDICTED: negative elongation factor E isoform 3 [Pan troglodytes]
gi|410211804|gb|JAA03121.1| RD RNA binding protein [Pan troglodytes]
gi|410249090|gb|JAA12512.1| RD RNA binding protein [Pan troglodytes]
gi|410296512|gb|JAA26856.1| RD RNA binding protein [Pan troglodytes]
gi|410358721|gb|JAA44628.1| RD RNA binding protein [Pan troglodytes]
Length = 382
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 316 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 371
Query: 86 DIFGE 90
D++ E
Sbjct: 372 DVYKE 376
>gi|410358719|gb|JAA44627.1| RD RNA binding protein [Pan troglodytes]
Length = 377
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 311 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 366
Query: 86 DIFGE 90
D++ E
Sbjct: 367 DVYKE 371
>gi|405966258|gb|EKC31565.1| Negative elongation factor E [Crassostrea gigas]
Length = 264
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYD-D 85
+VNG V+G++LKV++ARRQ ND S+ +WS+IA S K ++KDKR V YD +
Sbjct: 203 EVNGAMVEGIQLKVTMARRQPSFDQNNDQ-STKSWSSIAASNSQKSSYKDKREIVSYDAE 261
Query: 86 DIF 88
DIF
Sbjct: 262 DIF 264
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 1 MVYIHFPSNHTEEEITLQAKYQKL 24
MVY++FP N TEEE+ L+ KY L
Sbjct: 1 MVYVNFPQNLTEEELILKQKYATL 24
>gi|355762474|gb|EHH61972.1| hypothetical protein EGM_20126 [Macaca fascicularis]
Length = 382
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 316 ELNGTQVESVQLKVNIARQQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 371
Query: 86 DIFGE 90
D++ E
Sbjct: 372 DVYKE 376
>gi|50539818|ref|NP_001002375.1| negative elongation factor E [Danio rerio]
gi|49903853|gb|AAH76037.1| RD RNA binding protein [Danio rerio]
Length = 346
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V V +KVS+AR+Q P+ DAA+ + W+++A S KG+++DKR QV+Y +
Sbjct: 288 ELNGTTVGDVNIKVSIARKQ----PMLDAATGKSVWASLAVQNSAKGSYRDKRSQVVYSE 343
Query: 86 DIF 88
D
Sbjct: 344 DFL 346
>gi|94733401|emb|CAK04563.1| novel protein (zgc:92496) [Danio rerio]
Length = 346
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V V +KVS+AR+Q P+ DAA+ + W+++A S KG+++DKR QV+Y +
Sbjct: 288 ELNGTTVGDVNIKVSIARKQ----PMLDAATGKSVWASLAVQNSAKGSYRDKRSQVVYSE 343
Query: 86 DIF 88
D
Sbjct: 344 DFL 346
>gi|37362276|gb|AAQ91266.1| class III histocompatibility antigen RD [Danio rerio]
Length = 346
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V V +KVS+AR+Q P+ DAA+ + W+++A S KG+++DKR QV+Y +
Sbjct: 288 ELNGTTVGDVNIKVSIARKQ----PMLDAATGKSVWASLAVQNSAKGSYRDKRSQVVYSE 343
Query: 86 DIF 88
D
Sbjct: 344 DFL 346
>gi|386949|gb|AAA36308.1| MHC HLA-RD protein, partial [Homo sapiens]
Length = 382
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LK ++AR+Q P+ DAA+ + W A+A S KG H+DKR Q++Y D
Sbjct: 316 ELNGTQVESVQLKDNIARKQ----PMLDAATGKSVWGALAVQNSPKGCHRDKRTQIVYSD 371
Query: 86 DIFGE 90
D++ E
Sbjct: 372 DVYKE 376
>gi|148694798|gb|EDL26745.1| RD RNA-binding protein, isoform CRA_a [Mus musculus]
gi|148694800|gb|EDL26747.1| RD RNA-binding protein, isoform CRA_c [Mus musculus]
gi|148694802|gb|EDL26749.1| RD RNA-binding protein, isoform CRA_a [Mus musculus]
gi|148694804|gb|EDL26751.1| RD RNA-binding protein, isoform CRA_a [Mus musculus]
Length = 367
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 310 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 365
Query: 86 DI 87
D+
Sbjct: 366 DL 367
>gi|38372876|sp|P19426.2|NELFE_MOUSE RecName: Full=Negative elongation factor E; Short=NELF-E; AltName:
Full=RNA-binding protein RD
Length = 375
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 318 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 373
Query: 86 DI 87
D+
Sbjct: 374 DL 375
>gi|114052226|ref|NP_613046.2| negative elongation factor E [Mus musculus]
gi|114052228|ref|NP_001039328.1| negative elongation factor E [Mus musculus]
gi|114052414|ref|NP_001039329.1| negative elongation factor E [Mus musculus]
gi|12849099|dbj|BAB28206.1| unnamed protein product [Mus musculus]
gi|22028165|gb|AAH34867.1| RD RNA-binding protein [Mus musculus]
gi|74150941|dbj|BAE27605.1| unnamed protein product [Mus musculus]
gi|74203476|dbj|BAE20893.1| unnamed protein product [Mus musculus]
Length = 367
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 310 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 365
Query: 86 DI 87
D+
Sbjct: 366 DL 367
>gi|47087107|ref|NP_997713.1| RD RNA-binding protein [Rattus norvegicus]
gi|259906426|ref|NP_001159373.1| RD RNA-binding protein [Rattus norvegicus]
gi|46237593|emb|CAE83971.1| RD RNA-binding protein [Rattus norvegicus]
gi|50927106|gb|AAH79427.1| Rdbp protein [Rattus norvegicus]
gi|149027988|gb|EDL83439.1| rCG38266, isoform CRA_a [Rattus norvegicus]
gi|149027990|gb|EDL83441.1| rCG38266, isoform CRA_a [Rattus norvegicus]
gi|149027993|gb|EDL83444.1| rCG38266, isoform CRA_a [Rattus norvegicus]
Length = 369
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 312 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 367
Query: 86 DI 87
D+
Sbjct: 368 DL 369
>gi|199608|gb|AAA39680.1| 42 kd polypeptide (RD), (first expressed exon) [Mus musculus]
Length = 375
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 318 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 373
Query: 86 DI 87
D+
Sbjct: 374 DL 375
>gi|3986765|gb|AAC84161.1| RD [Mus musculus]
Length = 342
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 285 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 340
Query: 86 DI 87
D+
Sbjct: 341 DL 342
>gi|229366046|gb|ACQ58003.1| Negative elongation factor E [Anoplopoma fimbria]
Length = 376
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NG V V +KVS+AR+Q P+ DAA+ + W+++A S KG+++DKR+QV+Y++
Sbjct: 318 ELNGATVGDVHIKVSIARKQ----PMLDAATGKSVWASLAVQNSTKGSYRDKRNQVVYNE 373
Query: 86 DIF 88
D
Sbjct: 374 DFL 376
>gi|346469153|gb|AEO34421.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDD- 85
++NG V G+KL+VS ARRQ + P S TW+++A + S KG + D R V+Y+D
Sbjct: 223 EMNGATVSGIKLRVSFARRQ-PLIPQQSDGSPATWTSMAANYSQKGGNADTRKAVLYNDL 281
Query: 86 DIF 88
D+F
Sbjct: 282 DLF 284
>gi|291229550|ref|XP_002734734.1| PREDICTED: RD RNA-binding protein-like [Saccoglossus kowalevskii]
Length = 282
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 7/63 (11%)
Query: 28 VNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYD-D 85
+NGT V+GV LKVS+ARRQ P+ ++A+ ++ WS++A S K HKD+R V+YD D
Sbjct: 224 INGTLVEGVHLKVSMARRQ----PMLESATDNSPWSSVAAGIS-KNAHKDRRQMVVYDAD 278
Query: 86 DIF 88
D+F
Sbjct: 279 DLF 281
>gi|387017252|gb|AFJ50744.1| Negative elongation factor E [Crotalus adamanteus]
Length = 338
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAA-SSTTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ VKL VS+AR+Q P+ D A ++ W +A ++ G+H+DKR QVIY +
Sbjct: 280 QLNGTVVEDVKLTVSIARKQ----PMLDVAIGNSVWGTLAVINTINGSHQDKRSQVIYKE 335
Query: 86 DIF 88
D F
Sbjct: 336 DNF 338
>gi|47190437|emb|CAG14780.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NG+ V V +KVS+AR+Q P+ DAA+ + W+++A S KG+++DKR+QV+Y +
Sbjct: 70 ELNGSTVGDVYIKVSIARKQ----PMLDAATGKSVWASLAVQNSTKGSYRDKRNQVVYSE 125
Query: 86 DI 87
D
Sbjct: 126 DF 127
>gi|148225378|ref|NP_001091150.1| uncharacterized protein LOC100036904 [Xenopus laevis]
gi|120537990|gb|AAI29627.1| LOC100036904 protein [Xenopus laevis]
Length = 335
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 28 VNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+N ++ + +KVS+AR+Q P+ +AA+ + W ++A S+KG+H+DKR QV Y +D
Sbjct: 278 LNNKSIEDIPVKVSIARKQ----PMLEAATGKSVWGSLAVQNSVKGSHRDKRSQVNYSED 333
Query: 87 IF 88
IF
Sbjct: 334 IF 335
>gi|148236769|ref|NP_001089853.1| negative elongation factor complex member E [Xenopus laevis]
gi|80478518|gb|AAI08547.1| MGC131007 protein [Xenopus laevis]
Length = 335
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++N ++ + +KVS+AR+Q P+ +AA+ + W ++A S+KG+H+DKR QV Y +
Sbjct: 277 ELNNKLIEDIPVKVSIARKQ----PMLEAATGKSVWGSLAVQNSVKGSHRDKRSQVNYSE 332
Query: 86 DIF 88
DIF
Sbjct: 333 DIF 335
>gi|432881490|ref|XP_004073808.1| PREDICTED: uncharacterized protein LOC101175662 [Oryzias latipes]
Length = 353
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++N + V V +KVS+AR+Q P+ DAA+ + W+++A S KG+++DKR+QV+Y +
Sbjct: 295 ELNSSVVGDVHIKVSIARKQ----PMLDAATGKSVWASLAVQNSTKGSYRDKRNQVVYSE 350
Query: 86 DIF 88
D
Sbjct: 351 DFL 353
>gi|427792869|gb|JAA61886.1| Putative negative elongation factor e, partial [Rhipicephalus
pulchellus]
Length = 315
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDD- 85
++NG V G+KL+VS ARRQ + P + S W+A+A + KG D R V+Y+D
Sbjct: 254 EMNGATVSGIKLRVSFARRQ-PLIPQSSDGSPANWTAMASNYGQKGGTTDNRKAVLYNDL 312
Query: 86 DIF 88
D+F
Sbjct: 313 DLF 315
>gi|312381883|gb|EFR27517.1| hypothetical protein AND_05739 [Anopheles darlingi]
Length = 462
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 19 AKYQKLKRKVNGTH---VQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHK 75
AK + R + H V G++L+V LARRQ ++ PIN+A SS WSA+ KG +
Sbjct: 264 AKIESADRSIAELHSKTVGGIQLQVQLARRQPQINPINEAGSSAVWSALGHPPEAKGPND 323
Query: 76 DKRHQV 81
+RH +
Sbjct: 324 RERHSI 329
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 24/28 (85%)
Query: 1 MVYIHFPSNHTEEEITLQAKYQKLKRKV 28
MVY+HFPSN TEEE+ LQAKY L++KV
Sbjct: 1 MVYLHFPSNLTEEELMLQAKYAMLRKKV 28
>gi|226443400|ref|NP_001140115.1| Negative elongation factor E [Salmo salar]
gi|221222298|gb|ACM09810.1| Negative elongation factor E [Salmo salar]
Length = 356
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NG+ V V +KVS+AR+Q P+ +AA+ + W+ +A S KG+++DKR+QV+Y +
Sbjct: 298 ELNGSTVGDVPIKVSIARKQ----PMLEAATGKSVWATLAVQNSAKGSYRDKRNQVVYSE 353
Query: 86 DIF 88
D
Sbjct: 354 DFL 356
>gi|383853078|ref|XP_003702051.1| PREDICTED: negative elongation factor E-like [Megachile rotundata]
Length = 275
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G+ V ++LKVSLARRQ + I+D +SS+ WS IA + S K HKD+R +Y++D
Sbjct: 213 EMDGSMVSSIQLKVSLARRQPIIESISDVSSSSMWSPIAANYSQKSVHKDRRDLKVYEED 272
Query: 87 IF 88
+F
Sbjct: 273 LF 274
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 1 MVYIHFPSNHTEEEITLQA 19
MVY+HFPSN TEEE+ LQA
Sbjct: 4 MVYLHFPSNLTEEELMLQA 22
>gi|390341611|ref|XP_789598.2| PREDICTED: negative elongation factor E-like [Strongylocentrotus
purpuratus]
Length = 276
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
++NGT V G+ ++V++ARRQ + + + +S W+ IA + K KD R V+YD+D
Sbjct: 215 EMNGTMVNGMTVRVAMARRQPSLEAVQNNTNS-PWTKIAGGIT-KTRPKDSREVVVYDND 272
>gi|156541485|ref|XP_001600344.1| PREDICTED: negative elongation factor E-like [Nasonia
vitripennis]
Length = 210
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 1 MVYIHFPSNHTEEEITLQA 19
MVY+HFPSN TEEEI LQA
Sbjct: 1 MVYLHFPSNLTEEEIMLQA 19
>gi|322711147|gb|EFZ02721.1| MFS transporter, putative [Metarhizium anisopliae ARSEF 23]
Length = 553
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 18 QAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDA 55
Q + +KLKRK+NG ++G K+++ AR + +V P DA
Sbjct: 72 QMEAEKLKRKLNGATLKGSKMRIEKARPEERVEPTGDA 109
>gi|322697374|gb|EFY89154.1| MFS transporter, putative [Metarhizium acridum CQMa 102]
Length = 597
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 18 QAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDA 55
Q + +KLK+K+NG ++G K+++ AR + +V P DA
Sbjct: 111 QMEAEKLKKKLNGATLKGSKMRIEKARPEERVEPTGDA 148
>gi|358386059|gb|EHK23655.1| hypothetical protein TRIVIDRAFT_230272 [Trichoderma virens
Gv29-8]
Length = 574
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 18 QAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPIND 54
+A +KL++K+NGT ++G K+++ AR + +V P +
Sbjct: 55 EADAEKLRKKLNGTTLKGCKMRIEKARPETRVEPTGE 91
>gi|328719180|ref|XP_001947788.2| PREDICTED: negative elongation factor E-like [Acyrthosiphon
pisum]
Length = 217
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 1 MVYIHFPSNHTEEEITLQ 18
MVY+HFP+N TEEE+ LQ
Sbjct: 1 MVYLHFPTNLTEEELMLQ 18
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,669,121,723
Number of Sequences: 23463169
Number of extensions: 55914632
Number of successful extensions: 111559
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 111251
Number of HSP's gapped (non-prelim): 235
length of query: 106
length of database: 8,064,228,071
effective HSP length: 74
effective length of query: 32
effective length of database: 6,327,953,565
effective search space: 202494514080
effective search space used: 202494514080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)