BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15193
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BZ2|A Chain A, Solution Structure Of Nelf E Rrm
pdb|2JX2|A Chain A, Solution Conformation Of Rna-Bound Nelf-E Rrm
Length = 121
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 4/32 (12%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS 58
++NGT V+ V+LKV++AR+Q P+ DAA+
Sbjct: 92 ELNGTQVESVQLKVNIARKQ----PMLDAATG 119
>pdb|1X5P|A Chain A, Solution Structure Of Rrm Domain In Parp14
Length = 97
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 4/33 (12%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASST 59
++NGT V+ V+LKV++AR+Q P+ D+ S+
Sbjct: 68 ELNGTQVESVQLKVNIARKQ----PMLDSGPSS 96
>pdb|2CPE|A Chain A, Solution Structure Of The Rna Recognition Motif Of Ewing
Sarcoma(Ews) Protein
Length = 113
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 28 VNGTHVQGVKLKVSLARRQLKVAPINDAASS 58
+G QG KLKVSLAR++ P+N SS
Sbjct: 85 FDGKDFQGSKLKVSLARKK---PPMNSGPSS 112
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 33 VQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRH 79
+ KLKVS K+A I+D W + K N+ D H
Sbjct: 279 ICNFKLKVSKGSNDCKIAWISDTGLVIVWPNRRLADTFKLNYNDDEH 325
>pdb|1GVE|A Chain A, Aflatoxin Aldehyde Reductase (Akr7a1) From Rat Liver
pdb|1GVE|B Chain B, Aflatoxin Aldehyde Reductase (Akr7a1) From Rat Liver
Length = 327
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 1 MVYIHFPSNHTEEEITLQAKYQ 22
+ Y+HFP + T E TLQA +Q
Sbjct: 105 LFYLHFPDHGTPIEETLQACHQ 126
>pdb|3BEQ|A Chain A, Neuraminidase Of ABREVIG MISSION11918 H1N1 STRAIN
pdb|3BEQ|B Chain B, Neuraminidase Of ABREVIG MISSION11918 H1N1 STRAIN
pdb|3B7E|A Chain A, Neuraminidase Of ABREVIG MISSION11918 H1N1 STRAIN IN
COMPLEX WITH Zanamivir
pdb|3B7E|B Chain B, Neuraminidase Of ABREVIG MISSION11918 H1N1 STRAIN IN
COMPLEX WITH Zanamivir
Length = 385
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 50 APINDAASSTTWSAIACHQSL 70
+P N S WSA ACH +
Sbjct: 86 SPYNSRFESVAWSASACHDGM 106
>pdb|3CYE|A Chain A, Cyrstal Structure Of The Native 1918 H1n1 Neuraminidase
From A Crystal With Lattice-Translocation Defects
pdb|3CYE|B Chain B, Cyrstal Structure Of The Native 1918 H1n1 Neuraminidase
From A Crystal With Lattice-Translocation Defects
Length = 387
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 50 APINDAASSTTWSAIACHQSL 70
+P N S WSA ACH +
Sbjct: 86 SPYNSRFESVAWSASACHDGM 106
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 2 VYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLK 48
V + P E+ I + K + R ++ V+ VKL+++LAR +K
Sbjct: 376 VLVQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNWVK 422
>pdb|4B7R|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7R|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7R|C Chain C, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7R|D Chain D, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 387
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 50 APINDAASSTTWSAIACHQSL 70
+P N S WSA ACH +
Sbjct: 86 SPYNSRFESVAWSASACHDGI 106
>pdb|3NSS|A Chain A, The 2009 Pandemic H1n1 Neuraminidase N1 Lacks The
150-Cavity In Its Active Sites
pdb|3NSS|B Chain B, The 2009 Pandemic H1n1 Neuraminidase N1 Lacks The
150-Cavity In Its Active Sites
pdb|3TI3|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir
pdb|3TI3|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir
pdb|3TI4|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TI4|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Laninamivir Octanoate
pdb|3TI5|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Zanamivir
pdb|3TI5|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Zanamivir
pdb|3TI6|A Chain A, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Oseltamivir
pdb|3TI6|B Chain B, Crystal Structure Of 2009 Pandemic H1n1 Neuraminidase
Complexed With Oseltamivir
Length = 388
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 50 APINDAASSTTWSAIACHQSL 70
+P N S WSA ACH +
Sbjct: 87 SPYNSRFESVAWSASACHDGI 107
>pdb|4B7J|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7N|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 469
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 50 APINDAASSTTWSAIACHQSL 70
+P N S WSA ACH +
Sbjct: 168 SPYNSRFESVAWSASACHDGI 188
>pdb|4B7Q|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7Q|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7Q|C Chain C, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7Q|D Chain D, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 469
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 50 APINDAASSTTWSAIACHQSL 70
+P N S WSA ACH +
Sbjct: 168 SPYNSRFESVAWSASACHDGI 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,201,231
Number of Sequences: 62578
Number of extensions: 107028
Number of successful extensions: 225
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 15
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)