BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15193
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92204|NELFE_DROME Negative elongation factor E OS=Drosophila melanogaster GN=Nelf-E
PE=1 SV=1
Length = 280
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277
Query: 87 IF 88
Sbjct: 278 FL 279
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 1 MVYIHFPSNHTEEEITL 17
MVYIHFP+N TEEE L
Sbjct: 1 MVYIHFPNNLTEEEQML 17
>sp|Q95ZE9|NELFE_DROVI Negative elongation factor E OS=Drosophila virilis GN=Nelf-E PE=3
SV=1
Length = 281
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V Y+DD
Sbjct: 219 EMHGKSVTGIVLQVQLARRQPQIVPINDASSSAVWSSIAASKSQKGSHKDLRQMVQYNDD 278
Query: 87 IF 88
Sbjct: 279 FL 280
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 1 MVYIHFPSNHTEEE 14
MVYIHFP+N TEEE
Sbjct: 1 MVYIHFPNNLTEEE 14
>sp|Q0V898|NELFE_BOVIN Negative elongation factor E OS=Bos taurus GN=RDBP PE=2 SV=1
Length = 374
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 308 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 363
Query: 86 DIFGE 90
D++ E
Sbjct: 364 DVYKE 368
>sp|P18615|NELFE_HUMAN Negative elongation factor E OS=Homo sapiens GN=RDBP PE=1 SV=3
Length = 380
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 314 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369
Query: 86 DIFGE 90
D++ E
Sbjct: 370 DVYKE 374
>sp|P19426|NELFE_MOUSE Negative elongation factor E OS=Mus musculus GN=Rdbp PE=1 SV=2
Length = 375
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 318 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 373
Query: 86 DI 87
D+
Sbjct: 374 DL 375
>sp|A0PM81|RL18_MYCUA 50S ribosomal protein L18 OS=Mycobacterium ulcerans (strain Agy99)
GN=rplR PE=3 SV=1
Length = 122
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRH 79
++ +L++++ GT Q +L V + R + V +NDA +T +A + ++G DK+
Sbjct: 16 RHARLRKRIAGTQ-QRPRLVVHRSARHIHVQLVNDANGTTVAAASSIETDVRGLDGDKKA 74
Query: 80 QVIYDDDIFGEEPPLEDPDSIAME 103
+ + + E D D++ +
Sbjct: 75 RSVRVGQLIAERAKAADIDTVVFD 98
>sp|A6W5V4|RL18_KINRD 50S ribosomal protein L18 OS=Kineococcus radiotolerans (strain ATCC
BAA-149 / DSM 14245 / SRS30216) GN=rplR PE=3 SV=1
Length = 127
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 16 TLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHK 75
+L+ ++ ++++KV GT V+ +L V+ + R + V I+DAA T SA L+ +
Sbjct: 17 SLKRRHTRVRKKVVGTAVR-PRLVVTRSTRHVFVQVIDDAAGHTLASASTMEADLRASGD 75
Query: 76 DKRHQVIYDDDIFGEEPPLEDPDSIAME 103
DK + + GE D++ +
Sbjct: 76 DKSAKAKAVGVLVGERAKAAGIDAVVFD 103
>sp|B2HCT7|RL18_MYCMM 50S ribosomal protein L18 OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=rplR PE=3 SV=1
Length = 135
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRH 79
++ +L++++ GT Q +L V + R + V +NDA +T +A + ++G DK+
Sbjct: 29 RHARLRKRIAGTQ-QRPRLVVHRSARHIHVQLVNDANGTTVAAASSIETDVRGLDGDKKA 87
Query: 80 QVIYDDDIFGEEPPLEDPDSIAME 103
+ + + E D++ +
Sbjct: 88 RSVRVGQLIAERAKAAGIDTVVFD 111
>sp|O32999|RL18_MYCLE 50S ribosomal protein L18 OS=Mycobacterium leprae (strain TN)
GN=rplR PE=3 SV=1
Length = 122
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRH 79
++ +L++KV+GT + +L V+ + R + V +ND +T +A + ++G DK+
Sbjct: 16 RHARLRKKVSGTS-ERPRLVVNRSARHIHVQLVNDVTGTTVAAASSIEADVRGLQGDKKV 74
Query: 80 QVIYDDDIFGEEPPLEDPDSIAME 103
+ + + E +++ +
Sbjct: 75 RSVRVGQLIAERAKAAGINTVVFD 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,785,948
Number of Sequences: 539616
Number of extensions: 1336212
Number of successful extensions: 2369
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2353
Number of HSP's gapped (non-prelim): 30
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)