Query psy15193
Match_columns 106
No_of_seqs 33 out of 35
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 22:57:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bs9_A Nucleolysin TIA-1 isofo 95.6 0.011 3.7E-07 35.4 3.2 28 20-47 60-87 (87)
2 3md1_A Nuclear and cytoplasmic 95.4 0.011 3.8E-07 35.1 2.7 28 21-48 56-83 (83)
3 2bz2_A Negative elongation fac 95.2 0.0096 3.3E-07 39.5 2.2 34 21-54 86-119 (121)
4 2dgx_A KIAA0430 protein; RRM d 94.9 0.022 7.7E-07 35.4 3.2 28 21-48 65-92 (96)
5 1x5p_A Negative elongation fac 94.9 0.036 1.2E-06 34.3 4.1 31 20-50 61-91 (97)
6 1whw_A Hypothetical protein ri 94.4 0.037 1.3E-06 34.0 3.2 30 21-50 63-92 (99)
7 3mdf_A Peptidyl-prolyl CIS-tra 94.0 0.032 1.1E-06 33.1 2.4 24 21-44 62-85 (85)
8 2err_A Ataxin-2-binding protei 93.9 0.037 1.3E-06 35.4 2.7 28 21-48 82-109 (109)
9 2e5j_A Methenyltetrahydrofolat 93.8 0.026 8.9E-07 35.0 1.8 27 21-47 69-95 (97)
10 4fxv_A ELAV-like protein 1; RN 93.7 0.039 1.3E-06 35.2 2.4 24 21-44 74-97 (99)
11 2x1f_A MRNA 3'-END-processing 93.6 0.069 2.4E-06 32.8 3.4 31 21-51 57-87 (96)
12 1x4g_A Nucleolysin TIAR; struc 93.6 0.059 2E-06 34.0 3.1 31 20-50 73-103 (109)
13 1wg1_A KIAA1579 protein, homol 93.5 0.12 4E-06 31.5 4.4 31 20-50 52-82 (88)
14 2lcw_A RNA-binding protein FUS 92.6 0.013 4.5E-07 37.4 0.0 30 21-50 70-99 (116)
15 2dnp_A RNA-binding protein 14; 93.5 0.048 1.7E-06 33.2 2.6 29 20-48 55-83 (90)
16 2dgt_A RNA-binding protein 30; 93.5 0.058 2E-06 32.9 2.9 30 20-49 56-85 (92)
17 2cpd_A Apobec-1 stimulating pr 93.4 0.078 2.7E-06 32.7 3.5 28 21-48 64-91 (99)
18 3md3_A Nuclear and cytoplasmic 93.3 0.047 1.6E-06 34.9 2.4 26 20-45 141-166 (166)
19 4a8x_A RNA-binding protein wit 93.2 0.062 2.1E-06 32.0 2.7 26 21-46 60-85 (88)
20 1why_A Hypothetical protein ri 93.2 0.063 2.2E-06 33.1 2.8 29 20-48 65-95 (97)
21 1nu4_A U1A RNA binding domain; 93.2 0.06 2E-06 32.8 2.6 28 21-48 64-91 (97)
22 1oo0_B CG8781-PA, drosophila Y 93.1 0.059 2E-06 33.8 2.5 27 21-47 81-107 (110)
23 2do4_A Squamous cell carcinoma 93.0 0.066 2.2E-06 33.0 2.7 28 21-48 71-98 (100)
24 2jvr_A Nucleolar protein 3; RN 93.0 0.08 2.7E-06 35.2 3.3 29 20-48 79-107 (111)
25 2cpi_A CCR4-NOT transcription 93.0 0.09 3.1E-06 33.5 3.4 29 20-48 75-103 (111)
26 2cq3_A RNA-binding protein 9; 93.0 0.066 2.3E-06 33.2 2.7 30 21-50 68-97 (103)
27 2fc9_A NCL protein; structure 93.0 0.069 2.4E-06 33.0 2.8 29 20-48 65-93 (101)
28 2e5h_A Zinc finger CCHC-type a 93.0 0.066 2.2E-06 32.5 2.6 24 21-44 71-94 (94)
29 2xnq_A Nuclear polyadenylated 93.0 0.064 2.2E-06 33.7 2.6 28 20-47 69-96 (97)
30 2fc8_A NCL protein; structure 92.9 0.067 2.3E-06 33.0 2.6 28 21-48 67-94 (102)
31 1p27_B RNA-binding protein 8A; 92.9 0.067 2.3E-06 33.2 2.6 27 21-47 78-104 (106)
32 2cqh_A IGF-II mRNA-binding pro 92.8 0.072 2.5E-06 32.4 2.6 28 21-48 57-85 (93)
33 3s8s_A Histone-lysine N-methyl 92.7 0.066 2.2E-06 34.9 2.5 27 21-47 61-87 (110)
34 2cpe_A RNA-binding protein EWS 92.7 0.068 2.3E-06 33.7 2.4 29 21-49 78-106 (113)
35 2cqp_A RNA-binding protein 12; 92.6 0.1 3.5E-06 31.9 3.1 28 20-47 69-96 (98)
36 2cqb_A Peptidyl-prolyl CIS-tra 92.6 0.099 3.4E-06 32.2 3.0 29 21-49 67-95 (102)
37 2cq0_A Eukaryotic translation 92.6 0.1 3.5E-06 32.3 3.1 28 21-48 70-97 (103)
38 2d9p_A Polyadenylate-binding p 92.4 0.063 2.2E-06 33.3 2.0 28 21-48 68-95 (103)
39 2fy1_A RNA-binding motif prote 92.4 0.12 4.2E-06 33.5 3.4 28 21-48 61-88 (116)
40 2hvz_A Splicing factor, argini 92.4 0.086 3E-06 32.5 2.6 28 21-48 50-77 (101)
41 2cpz_A CUG triplet repeat RNA- 92.3 0.081 2.8E-06 33.5 2.5 30 21-50 80-109 (115)
42 2dnq_A RNA-binding protein 4B; 92.2 0.067 2.3E-06 32.5 1.9 29 21-49 55-83 (90)
43 2cpj_A Non-POU domain-containi 92.2 0.067 2.3E-06 33.1 1.9 31 20-50 63-93 (99)
44 2dgo_A Cytotoxic granule-assoc 92.2 0.085 2.9E-06 33.3 2.4 29 21-49 70-98 (115)
45 1x5t_A Splicing factor 3B subu 92.0 0.12 4E-06 31.4 2.8 28 21-48 61-88 (96)
46 2cqc_A Arginine/serine-rich sp 91.9 0.11 3.8E-06 31.4 2.6 25 21-45 70-94 (95)
47 2dgu_A Heterogeneous nuclear r 91.9 0.13 4.4E-06 32.1 2.9 28 21-48 58-85 (103)
48 1x4c_A Splicing factor, argini 91.9 0.19 6.6E-06 31.7 3.8 29 20-48 62-95 (108)
49 2dgw_A Probable RNA-binding pr 91.8 0.17 5.7E-06 30.7 3.3 28 20-48 62-89 (91)
50 2cph_A RNA binding motif prote 91.7 0.13 4.4E-06 31.8 2.8 30 21-50 71-101 (107)
51 2dgv_A HnRNP M, heterogeneous 91.7 0.084 2.9E-06 31.9 1.9 29 20-48 60-88 (92)
52 2cqi_A Nucleolysin TIAR; RNA r 91.7 0.14 4.8E-06 31.7 2.9 28 21-48 68-95 (103)
53 2jvo_A Nucleolar protein 3; nu 91.6 0.14 4.9E-06 32.8 3.1 29 20-48 77-105 (108)
54 2cpf_A RNA binding motif prote 91.6 0.095 3.2E-06 32.1 2.1 29 21-49 63-91 (98)
55 1fjc_A Nucleolin RBD2, protein 91.6 0.11 3.6E-06 31.7 2.3 29 20-48 65-93 (96)
56 2dnz_A Probable RNA-binding pr 91.6 0.11 3.9E-06 31.4 2.4 28 21-48 60-87 (95)
57 3p5t_L Cleavage and polyadenyl 91.5 0.077 2.6E-06 32.5 1.6 30 21-50 58-87 (90)
58 1x4a_A Splicing factor, argini 91.5 0.16 5.5E-06 31.8 3.1 29 20-48 73-101 (109)
59 1x5s_A Cold-inducible RNA-bind 91.5 0.078 2.7E-06 32.7 1.6 28 21-48 67-94 (102)
60 2dnm_A SRP46 splicing factor; 91.4 0.087 3E-06 32.6 1.8 28 21-48 68-95 (103)
61 1p1t_A Cleavage stimulation fa 91.3 0.051 1.7E-06 33.5 0.6 31 21-51 63-93 (104)
62 1wf1_A RNA-binding protein RAL 91.2 0.11 3.9E-06 32.7 2.2 28 21-48 75-102 (110)
63 1fje_B Nucleolin RBD12, protei 91.2 0.12 4.3E-06 33.8 2.4 28 20-47 148-175 (175)
64 2khc_A Testis-specific RNP-typ 91.1 0.092 3.1E-06 33.3 1.7 24 21-44 95-118 (118)
65 2kt5_A RNA and export factor-b 90.9 0.26 8.7E-06 31.7 3.7 30 21-50 89-118 (124)
66 2dnr_A Synaptojanin-1; RRM dom 90.9 0.094 3.2E-06 35.7 1.7 22 23-45 64-85 (91)
67 2la4_A Nuclear and cytoplasmic 90.9 0.099 3.4E-06 32.3 1.6 26 21-46 76-101 (101)
68 2do0_A HnRNP M, heterogeneous 90.8 0.16 5.4E-06 31.9 2.6 29 20-48 68-96 (114)
69 2cpx_A Hypothetical protein FL 90.7 0.11 3.8E-06 32.6 1.8 29 21-49 80-108 (115)
70 2jrs_A RNA-binding protein 39; 90.7 0.098 3.3E-06 33.6 1.5 27 21-47 81-107 (108)
71 1u6f_A Tcubp1, RNA-binding pro 90.6 0.25 8.5E-06 32.1 3.5 28 21-48 97-124 (139)
72 1whx_A Hypothetical protein ri 90.6 0.22 7.5E-06 32.0 3.1 30 21-50 59-88 (111)
73 2la6_A RNA-binding protein FUS 90.5 0.17 5.8E-06 31.2 2.5 24 21-44 76-99 (99)
74 4f25_A Polyadenylate-binding p 90.4 0.24 8.3E-06 31.8 3.3 28 21-48 58-85 (115)
75 3ex7_B RNA-binding protein 8A; 90.4 0.13 4.4E-06 33.0 1.9 28 21-48 77-104 (126)
76 2ywk_A Putative RNA-binding pr 90.3 0.16 5.6E-06 30.7 2.3 25 21-45 70-94 (95)
77 1wex_A Hypothetical protein (r 90.2 0.18 6E-06 32.9 2.5 37 20-56 63-101 (104)
78 2cq2_A Hypothetical protein LO 90.2 0.24 8.2E-06 33.8 3.2 31 21-51 76-111 (114)
79 2ytc_A PRE-mRNA-splicing facto 90.1 0.13 4.3E-06 30.6 1.6 24 21-44 61-85 (85)
80 2kvi_A Nuclear polyadenylated 89.9 0.11 3.8E-06 32.1 1.3 29 20-48 57-85 (96)
81 3ulh_A THO complex subunit 4; 89.9 0.21 7.1E-06 31.0 2.5 24 21-44 83-106 (107)
82 3egn_A RNA-binding protein 40; 89.5 0.23 7.8E-06 32.6 2.6 26 21-46 105-130 (143)
83 2ki2_A SS-DNA binding protein 89.2 0.084 2.9E-06 31.8 0.3 30 21-50 55-84 (90)
84 2e44_A Insulin-like growth fac 89.2 0.19 6.4E-06 30.6 1.9 26 21-46 67-92 (96)
85 2kn4_A Immunoglobulin G-bindin 89.2 0.31 1.1E-05 32.2 3.1 28 21-48 125-152 (158)
86 3pgw_A U1-A; protein-RNA compl 89.1 0.24 8.1E-06 35.3 2.6 25 21-45 257-282 (282)
87 1rk8_A CG8781-PA, CG8781-PA pr 89.1 0.32 1.1E-05 32.9 3.2 29 20-48 126-154 (165)
88 1x5u_A Splicing factor 3B subu 89.0 0.24 8.3E-06 30.6 2.3 30 20-49 69-98 (105)
89 1wi8_A EIF-4B, eukaryotic tran 88.7 0.36 1.2E-05 29.9 3.0 28 20-48 69-96 (104)
90 2dnh_A Bruno-like 5, RNA bindi 88.5 0.29 9.9E-06 30.2 2.4 29 20-48 68-99 (105)
91 2div_A TRNA selenocysteine ass 88.4 0.23 7.9E-06 30.3 1.9 28 21-48 65-96 (99)
92 2lea_A Serine/arginine-rich sp 88.0 0.15 5.1E-06 34.1 0.9 28 21-48 102-129 (135)
93 3zzy_A Polypyrimidine tract-bi 87.9 0.43 1.5E-05 33.3 3.3 28 21-48 79-108 (130)
94 2a3j_A U1 small nuclear ribonu 87.9 0.18 6.2E-06 34.1 1.3 29 21-49 85-113 (127)
95 4f02_A Polyadenylate-binding p 87.8 0.26 8.8E-06 34.3 2.1 29 20-48 155-183 (213)
96 2i2y_A Fusion protein consists 87.8 0.23 7.8E-06 32.9 1.7 27 21-47 123-149 (150)
97 2kxn_B Transformer-2 protein h 87.2 0.29 1E-05 32.5 2.0 27 21-47 101-127 (129)
98 2yh0_A Splicing factor U2AF 65 87.1 0.41 1.4E-05 31.7 2.7 28 21-48 169-196 (198)
99 2qfj_A FBP-interacting repress 87.1 0.43 1.5E-05 32.0 2.8 29 20-48 179-207 (216)
100 2nlw_A Eukaryotic translation 87.0 0.28 9.5E-06 30.9 1.7 25 21-45 74-99 (105)
101 3ns6_A Eukaryotic translation 87.0 0.27 9.2E-06 30.8 1.7 25 21-45 67-92 (100)
102 1fj7_A Nucleolin RBD1, protein 87.0 0.22 7.5E-06 30.7 1.2 27 21-48 71-97 (101)
103 2dng_A Eukaryotic translation 86.8 0.45 1.5E-05 29.4 2.6 28 20-48 68-95 (103)
104 2e5i_A Heterogeneous nuclear r 86.7 0.35 1.2E-05 33.1 2.3 27 21-47 75-103 (124)
105 2dnn_A RNA-binding protein 12; 86.6 0.45 1.5E-05 31.3 2.7 31 20-51 68-98 (109)
106 2ghp_A U4/U6 snRNA-associated 86.6 0.34 1.2E-05 34.6 2.2 26 21-47 267-292 (292)
107 1x4h_A RNA-binding protein 28; 86.6 0.88 3E-05 28.1 3.9 31 20-50 69-105 (111)
108 2ek1_A RNA-binding protein 12; 86.5 0.59 2E-05 28.2 3.0 25 20-44 69-93 (95)
109 1h2v_Z 20 kDa nuclear CAP bind 86.5 0.43 1.5E-05 31.7 2.5 28 21-48 94-121 (156)
110 2cq4_A RNA binding motif prote 86.4 0.31 1.1E-05 30.7 1.7 27 21-48 80-106 (114)
111 2dgp_A Bruno-like 4, RNA bindi 86.2 0.51 1.7E-05 29.1 2.6 28 21-48 68-98 (106)
112 3n9u_C Cleavage and polyadenyl 86.2 0.44 1.5E-05 32.9 2.5 28 21-48 112-139 (156)
113 2lkz_A RNA-binding protein 5; 85.9 0.5 1.7E-05 30.3 2.5 25 21-45 66-94 (95)
114 1qm9_A Polypyrimidine tract-bi 85.8 0.29 1E-05 32.9 1.4 26 21-46 171-197 (198)
115 2jwn_A Embryonic polyadenylate 85.6 0.56 1.9E-05 29.8 2.6 27 21-48 91-117 (124)
116 2j76_E EIF-4B, EIF4B, eukaryot 85.3 0.37 1.3E-05 30.0 1.6 27 20-47 73-99 (100)
117 3ucg_A Polyadenylate-binding p 85.3 0.4 1.4E-05 28.5 1.7 24 21-45 61-84 (89)
118 2dhg_A TRNA selenocysteine ass 85.2 0.24 8.1E-06 30.6 0.7 28 21-48 64-92 (104)
119 3tyt_A Heterogeneous nuclear r 85.1 0.52 1.8E-05 33.5 2.5 28 21-48 55-82 (205)
120 1b7f_A Protein (SXL-lethal pro 85.1 0.33 1.1E-05 31.2 1.4 24 20-43 143-168 (168)
121 2lxi_A RNA-binding protein 10; 85.1 0.5 1.7E-05 29.3 2.2 29 22-50 58-87 (91)
122 2g4b_A Splicing factor U2AF 65 85.0 0.55 1.9E-05 30.4 2.4 23 21-43 149-171 (172)
123 2dis_A Unnamed protein product 84.8 0.46 1.6E-05 29.4 1.9 30 21-50 65-96 (109)
124 3lqv_A PRE-mRNA branch site pr 84.6 0.46 1.6E-05 29.8 1.9 28 21-48 60-87 (115)
125 2wbr_A GW182, gawky, LD47780P; 84.4 0.63 2.2E-05 31.3 2.6 23 21-43 56-78 (89)
126 2adc_A Polypyrimidine tract-bi 84.3 0.46 1.6E-05 33.4 1.9 26 21-46 202-228 (229)
127 2dgs_A DAZ-associated protein 83.9 0.76 2.6E-05 28.1 2.6 29 21-50 65-93 (99)
128 2ku7_A MLL1 PHD3-CYP33 RRM chi 83.9 0.66 2.3E-05 29.6 2.4 24 20-43 117-140 (140)
129 2dit_A HIV TAT specific factor 83.6 0.66 2.3E-05 29.6 2.3 28 21-48 77-104 (112)
130 1fxl_A Paraneoplastic encephal 83.5 0.59 2E-05 29.7 2.1 23 21-43 143-167 (167)
131 2diu_A KIAA0430 protein; struc 83.4 0.64 2.2E-05 31.8 2.3 29 22-50 60-88 (96)
132 2pe8_A Splicing factor 45; RRM 83.4 0.71 2.4E-05 30.0 2.4 28 21-48 69-96 (105)
133 3q2s_C Cleavage and polyadenyl 83.2 0.27 9.3E-06 35.8 0.4 27 21-47 125-151 (229)
134 3smz_A Protein raver-1, ribonu 82.5 0.84 2.9E-05 32.5 2.7 28 21-48 239-266 (284)
135 1x4d_A Matrin 3; structural ge 81.5 0.86 2.9E-05 29.9 2.3 30 21-50 65-96 (102)
136 3pgw_S U1-70K; protein-RNA com 81.4 1.7 5.9E-05 34.8 4.5 28 21-48 157-184 (437)
137 1sjr_A Polypyrimidine tract-bi 80.9 0.69 2.3E-05 33.6 1.8 28 21-48 97-126 (164)
138 3pgw_A U1-A; protein-RNA compl 80.6 1.2 4E-05 31.7 2.9 28 21-48 65-92 (282)
139 1fxl_A Paraneoplastic encephal 80.3 1.2 4.1E-05 28.3 2.6 28 21-48 57-84 (167)
140 3s6e_A RNA-binding protein 39; 79.2 1.1 3.8E-05 29.9 2.3 29 21-49 68-96 (114)
141 3v4m_A Splicing factor U2AF 65 78.8 1.3 4.5E-05 28.6 2.5 28 21-48 72-99 (105)
142 2cq1_A PTB-like protein L; RRM 78.8 2 7E-05 27.7 3.4 29 21-49 64-94 (101)
143 1jmt_A Splicing factor U2AF 35 78.7 1.1 3.7E-05 28.9 2.0 23 21-43 81-103 (104)
144 2yh0_A Splicing factor U2AF 65 77.8 4.6 0.00016 26.5 5.0 26 22-48 65-90 (198)
145 1qm9_A Polypyrimidine tract-bi 77.7 1.1 3.7E-05 30.1 1.9 28 21-48 54-81 (198)
146 1b7f_A Protein (SXL-lethal pro 77.6 1.6 5.5E-05 27.9 2.6 28 21-48 58-85 (168)
147 2cqd_A RNA-binding region cont 77.4 2.1 7.3E-05 26.8 3.1 27 21-48 72-98 (116)
148 2m2b_A RNA-binding protein 10; 76.7 0.8 2.7E-05 29.8 1.0 26 21-46 79-108 (131)
149 2f3j_A RNA and export factor b 76.3 1.8 6.2E-05 30.2 2.8 30 21-50 142-171 (177)
150 1x4e_A RNA binding motif, sing 74.5 0.51 1.8E-05 28.0 -0.4 24 21-44 60-83 (85)
151 3r27_A HnRNP L, heterogeneous 74.1 1.5 5E-05 29.2 1.7 28 20-47 69-98 (100)
152 3md3_A Nuclear and cytoplasmic 73.9 3.3 0.00011 26.2 3.3 29 20-48 53-81 (166)
153 1sjq_A Polypyrimidine tract-bi 73.9 2.1 7.2E-05 28.6 2.5 29 21-49 65-95 (105)
154 1wel_A RNA-binding protein 12; 73.5 0.57 1.9E-05 30.2 -0.4 30 21-51 80-109 (124)
155 2dh8_A DAZ-associated protein 72.5 2.8 9.4E-05 25.7 2.6 27 21-48 71-97 (105)
156 2e5g_A U6 snRNA-specific termi 72.1 1.7 5.8E-05 26.4 1.6 27 21-48 58-84 (94)
157 2ad9_A Polypyrimidine tract-bi 72.1 2.3 7.8E-05 28.8 2.4 30 21-50 80-111 (119)
158 2adc_A Polypyrimidine tract-bi 71.7 4.8 0.00016 28.1 4.0 28 21-48 85-112 (229)
159 1x5o_A RNA binding motif, sing 71.4 2 7E-05 26.7 1.9 24 21-44 79-110 (114)
160 1fje_B Nucleolin RBD12, protei 70.3 2.7 9.2E-05 27.3 2.3 27 21-48 67-93 (175)
161 1ufw_A Synaptojanin 2; RNP dom 69.9 2.4 8.2E-05 29.0 2.1 19 23-42 73-91 (95)
162 2krb_A Eukaryotic translation 69.0 0.82 2.8E-05 27.1 -0.4 21 21-41 60-81 (81)
163 2db1_A Heterogeneous nuclear r 68.6 2.7 9.3E-05 27.0 2.0 27 21-48 74-100 (118)
164 1x4b_A Heterogeneous nuclear r 68.3 3.6 0.00012 25.8 2.5 27 21-48 82-108 (116)
165 3u1l_A PRE-mRNA-splicing facto 67.7 2.2 7.4E-05 32.4 1.7 28 21-48 192-231 (240)
166 3ue2_A Poly(U)-binding-splicin 66.0 3.9 0.00013 27.2 2.5 25 21-45 84-108 (118)
167 3beg_B Splicing factor, argini 62.1 4.6 0.00016 25.7 2.2 26 20-45 63-93 (115)
168 2cpy_A RNA-binding protein 12; 62.1 4.3 0.00015 25.7 2.0 29 21-50 70-98 (114)
169 3smz_A Protein raver-1, ribonu 61.5 5.5 0.00019 28.2 2.7 28 21-48 150-177 (284)
170 2mss_A Protein (musashi1); RNA 61.4 2.2 7.6E-05 24.5 0.5 21 22-43 55-75 (75)
171 3nmr_A Cugbp ELAV-like family 60.8 3.7 0.00013 26.2 1.6 24 20-43 148-174 (175)
172 2ghp_A U4/U6 snRNA-associated 60.2 5.6 0.00019 28.3 2.5 28 21-48 172-199 (292)
173 1uaw_A Mouse-musashi-1; RNP-ty 58.6 3.5 0.00012 23.6 1.0 22 21-43 55-76 (77)
174 2lmi_A GRSF-1, G-rich sequence 58.4 2.3 7.8E-05 26.7 0.2 29 21-50 68-96 (107)
175 2qfj_A FBP-interacting repress 57.6 4.9 0.00017 26.8 1.8 28 21-48 83-110 (216)
176 3s7r_A Heterogeneous nuclear r 57.1 7.2 0.00024 22.9 2.3 21 22-43 67-87 (87)
177 2cjk_A Nuclear polyadenylated 56.8 5.4 0.00018 25.5 1.8 24 22-46 143-166 (167)
178 2hzc_A Splicing factor U2AF 65 55.4 7.4 0.00025 22.7 2.1 20 21-41 66-85 (87)
179 1x4f_A Matrin 3; structural ge 53.9 4.4 0.00015 27.2 1.0 29 21-49 75-105 (112)
180 3sde_A Paraspeckle component 1 52.3 8.6 0.00029 27.4 2.4 27 21-47 71-97 (261)
181 2rs2_A Musashi-1, RNA-binding 51.9 11 0.00039 23.6 2.8 27 21-48 80-106 (109)
182 2g4b_A Splicing factor U2AF 65 51.2 7.1 0.00024 25.0 1.7 25 22-47 65-89 (172)
183 2hgl_A HNRPF protein, heteroge 48.9 6.6 0.00023 26.7 1.3 27 21-48 101-127 (136)
184 4f02_A Polyadenylate-binding p 47.8 12 0.00042 25.7 2.6 30 21-50 70-99 (213)
185 3sjb_C Golgi to ER traffic pro 47.6 8.4 0.00029 26.5 1.7 29 6-34 16-45 (93)
186 1wg5_A Heterogeneous nuclear r 45.6 14 0.00047 22.9 2.3 29 21-50 70-98 (104)
187 3vlc_E Golgi to ER traffic pro 44.1 18 0.0006 24.9 2.9 28 8-35 26-53 (94)
188 3l07_A Bifunctional protein fo 42.7 20 0.00068 28.2 3.4 35 2-42 67-102 (285)
189 2j8a_A Histone-lysine N-methyl 42.5 14 0.00048 26.7 2.3 23 22-44 70-94 (136)
190 4a5o_A Bifunctional protein fo 41.9 21 0.00071 28.1 3.4 35 2-42 68-103 (286)
191 4a26_A Putative C-1-tetrahydro 41.8 21 0.00071 28.3 3.4 35 2-42 70-105 (300)
192 3dxb_A Thioredoxin N-terminall 40.6 13 0.00044 25.8 1.8 23 21-43 188-210 (222)
193 1l3k_A Heterogeneous nuclear r 40.4 19 0.00065 23.5 2.5 28 22-50 160-187 (196)
194 1wez_A HnRNP H', FTP-3, hetero 39.5 14 0.00048 23.1 1.7 26 21-47 68-93 (102)
195 1iqt_A AUF1, heterogeneous nuc 38.4 8.4 0.00029 21.9 0.5 21 22-43 55-75 (75)
196 2cqg_A TDP-43, TAR DNA-binding 37.4 34 0.0012 20.6 3.2 26 22-49 71-96 (103)
197 3i38_A Putative chaperone DNAJ 36.8 37 0.0013 22.4 3.5 21 4-24 76-96 (109)
198 2fb9_A D-alanine:D-alanine lig 34.9 87 0.003 23.0 5.6 52 5-58 240-292 (322)
199 3p2o_A Bifunctional protein fo 34.9 24 0.00081 27.8 2.7 35 2-42 66-101 (285)
200 1s79_A Lupus LA protein; RRM, 33.0 8.3 0.00029 24.5 -0.2 23 21-44 65-87 (103)
201 2xs2_A Deleted in azoospermia- 32.0 22 0.00075 21.4 1.6 27 22-50 64-90 (102)
202 3d2w_A TAR DNA-binding protein 31.2 32 0.0011 20.8 2.3 21 27-47 63-85 (89)
203 2g0c_A ATP-dependent RNA helic 30.2 23 0.00077 21.2 1.5 24 22-45 53-76 (76)
204 1wf0_A TDP-43, TAR DNA-binding 30.0 29 0.001 20.3 2.0 22 27-48 57-80 (88)
205 1j8b_A YBAB; hypothetical prot 28.1 54 0.0018 22.2 3.2 27 10-36 13-39 (112)
206 3f42_A Protein HP0035; helicob 27.9 50 0.0017 22.1 3.0 29 15-43 13-45 (99)
207 2hgn_A Heterogeneous nuclear r 27.8 15 0.00053 24.9 0.4 27 21-48 99-125 (139)
208 3sja_C Golgi to ER traffic pro 26.4 36 0.0012 22.0 2.0 25 10-34 4-28 (65)
209 2dha_A FLJ20171 protein; RRM d 26.2 18 0.0006 24.1 0.5 29 21-50 81-109 (123)
210 2pvp_A D-alanine-D-alanine lig 24.8 1.2E+02 0.0041 23.1 5.0 52 5-58 275-327 (367)
211 2d9o_A DNAJ (HSP40) homolog, s 24.6 23 0.00079 22.8 0.8 25 22-48 68-92 (100)
212 3b2e_E Golgi to ER traffic pro 30.0 16 0.00055 24.5 0.0 29 7-35 15-43 (84)
213 2jo8_A Serine/threonine-protei 23.9 8 0.00027 24.2 -1.5 41 5-54 5-50 (51)
214 4h3o_A Lectin; cadmium, plant 23.7 22 0.00074 22.9 0.6 34 54-87 67-102 (105)
215 3tht_A Alkylated DNA repair pr 22.5 53 0.0018 26.0 2.7 27 21-47 69-100 (345)
216 1ehi_A LMDDL2, D-alanine:D-lac 22.5 2.5E+02 0.0086 21.1 6.4 53 5-58 270-323 (377)
217 4fxw_B Splicing factor 1; UHM, 21.2 99 0.0034 21.9 3.6 30 4-33 30-62 (124)
218 4e05_I Salivary anti-thrombin 20.2 23 0.0008 22.9 0.1 21 81-101 10-30 (61)
No 1
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=95.58 E-value=0.011 Score=35.43 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
.-++|++.|||..+.|-.|+|++|+.+|
T Consensus 60 ~A~~A~~~l~g~~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 60 DAENAIQQMGGQWLGGRQIRTNWATRKP 87 (87)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred HHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence 3467899999999999999999999987
No 2
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.36 E-value=0.011 Score=35.07 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=25.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+.+++
T Consensus 56 a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 83 (83)
T 3md1_A 56 AQNAMDSMQGQDLNGRPLRINWAAKLEH 83 (83)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred HHHHHHHhcCCeeCCcEEEEEecCcCCC
Confidence 4678899999999999999999998763
No 3
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=95.16 E-value=0.0096 Score=39.55 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=26.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVAPIND 54 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld~ind 54 (106)
-++|+.+|||..+.|-.|+|++|+.++..++++.
T Consensus 86 A~~Ai~~lng~~~~g~~l~V~~a~~~~~~~~~~g 119 (121)
T 2bz2_A 86 ADQAVAELNGTQVESVQLKVNIARKQPMLDAATG 119 (121)
T ss_dssp HHHHHHHHTTCBCSSCBCEEEECCSSCC------
T ss_pred HHHHHHHhCCCEECCeEEEEEEeCCCCCCCCCCC
Confidence 4678999999999999999999999999885543
No 4
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.86 E-value=0.022 Score=35.43 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=25.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|++|+..|.
T Consensus 65 A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 65 AIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp HHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 4688999999999999999999988775
No 5
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.86 E-value=0.036 Score=34.34 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
.-++|+++|||..+.|-.|+|++|+.++..+
T Consensus 61 ~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 61 SADQAVAELNGTQVESVQLKVNIARKQPMLD 91 (97)
T ss_dssp HHHHHHHHTTTEEETTEEEEEECCSSCCCCC
T ss_pred HHHHHHHHhCCCeECCeEEEEEECCCCCCCC
Confidence 3578899999999999999999999998865
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.36 E-value=0.037 Score=34.04 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=26.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|+++|||..+.|-.|+|++|+.++...
T Consensus 63 a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 63 AVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92 (99)
T ss_dssp HHHHHHHTTTEESSSCEEEEEECCCCSTTC
T ss_pred HHHHHHHhCCCEECCcEEEEEEcCCCcccc
Confidence 467889999999999999999999988754
No 7
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=94.04 E-value=0.032 Score=33.15 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=22.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeec
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiAR 44 (106)
-++|+++|||..+.|-.|+|++||
T Consensus 62 a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 62 AAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhCCCEECCcEEEEEEcC
Confidence 467889999999999999999997
No 8
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.93 E-value=0.037 Score=35.39 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=25.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+.+++
T Consensus 82 A~~Ai~~l~g~~~~g~~l~V~~a~~~~l 109 (109)
T 2err_A 82 ADRAREKLHGTVVEGRKIEVNNATARVM 109 (109)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCSCC
T ss_pred HHHHHHHcCCCEECCEEEEEEECCCCcC
Confidence 4678999999999999999999998874
No 9
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.81 E-value=0.026 Score=34.95 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=24.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|+++|||..+.|-.|+|++|+.++
T Consensus 69 a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 69 AQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp HHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 478899999999999999999999875
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=93.65 E-value=0.039 Score=35.16 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=22.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeec
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiAR 44 (106)
-++|+++|||..+.|-.|+|++||
T Consensus 74 A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 74 AERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp HHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhCCCEECCEEEEEEEee
Confidence 467899999999999999999996
No 11
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=93.62 E-value=0.069 Score=32.83 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=27.5
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVAP 51 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld~ 51 (106)
-++|++.|||..+.|-.|+|++|+..+...+
T Consensus 57 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 87 (96)
T 2x1f_A 57 SASAVRNLNGYQLGSRFLKCGYSSNSDISGV 87 (96)
T ss_dssp HHHHHHHHTTCEETTEECEEEECSCSSGGGH
T ss_pred HHHHHHHhCCCeECCeEEEEEEcCCCCCCCc
Confidence 4678999999999999999999999887653
No 12
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.57 E-value=0.059 Score=33.97 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
.-++|++.|||..+.|-.|+|++|+.+|...
T Consensus 73 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 73 SAAHAIVSVNGTTIEGHVVKCYWGKESPDMT 103 (109)
T ss_dssp HHHHHHHHHTTCEETTEECEEECCCCCCSSC
T ss_pred HHHHHHHHcCCCEECCcEEEEEecCCCCCCC
Confidence 3478899999999999999999999998754
No 13
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=93.52 E-value=0.12 Score=31.49 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
.-++|+++|||..+.|-.|+|++|....++-
T Consensus 52 ~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 82 (88)
T 1wg1_A 52 QAQNAIQMFHQYSFRGKDLIVQLQPTDALLC 82 (88)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEECCCCCCCS
T ss_pred HHHHHHHHhCCCeECCcEEEEEEcCCCceEe
Confidence 4578899999999999999999999988765
No 14
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=92.61 E-value=0.013 Score=37.42 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=26.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|+++|||..+.|-.|+|++|+.++.-.
T Consensus 70 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 70 AKAAIDWFDGKEFSGNPIKVSFATRRADFN 99 (116)
Confidence 467889999999999999999999998754
No 15
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.51 E-value=0.048 Score=33.17 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|++.|||..+.|-.|+|++|+.++.
T Consensus 55 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 55 DAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 34788999999999999999999998765
No 16
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.48 E-value=0.058 Score=32.94 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
.-++|++.|||..+.|-.|+|++|+..+.-
T Consensus 56 ~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 56 DAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred HHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 457889999999999999999999887763
No 17
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.41 E-value=0.078 Score=32.74 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=25.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+.++.
T Consensus 64 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 64 AVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp HHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 4788999999999999999999998765
No 18
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=93.34 E-value=0.047 Score=34.94 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeecc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARR 45 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARR 45 (106)
.-++|+++|||..+.|-.|+|++|+|
T Consensus 141 ~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 141 DAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHhCCCccCCcEEEEEecCC
Confidence 34688999999999999999999986
No 19
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=93.24 E-value=0.062 Score=31.95 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=23.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQ 46 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQ 46 (106)
-++|+++|||..+.|-.|+|++|+.+
T Consensus 60 a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 60 AEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp HHHHHHHHTTCEETTEECEEEEECCC
T ss_pred HHHHHHHcCCCeECCeEEEEEECCCC
Confidence 46788999999999999999999754
No 20
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.23 E-value=0.063 Score=33.07 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCceee--eeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQ--GVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~--gIqLKVSiARRQP~ 48 (106)
.-++|++.|||..+. |-.|+|++|+.+|.
T Consensus 65 ~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 65 AAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp HHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred HHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 357899999999999 99999999998774
No 21
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=93.17 E-value=0.06 Score=32.82 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=25.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|+.|+.++.
T Consensus 64 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 64 ATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred HHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 4678899999999999999999998765
No 22
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=93.05 E-value=0.059 Score=33.79 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=24.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|++.|||..+.|-.|+|++|+.++
T Consensus 81 A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 81 ALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp HHHHHHHHTTCEETTEECEEEESEESS
T ss_pred HHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 467889999999999999999998776
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.05 E-value=0.066 Score=33.04 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|.+|+.++.
T Consensus 71 a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 71 ASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp HHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred HHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 4678999999999999999999987764
No 24
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=93.05 E-value=0.08 Score=35.24 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|+++|||+.+.|-.|+|.+|+..|-
T Consensus 79 ~A~~Ai~~lng~~l~Gr~i~V~~a~~~p~ 107 (111)
T 2jvr_A 79 ILVEALERLNNIEFRGSVITVERDDNPPP 107 (111)
T ss_dssp HHHHHHHHTTTEEETTEEEEEEESCC---
T ss_pred HHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 35688999999999999999999997764
No 25
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.04 E-value=0.09 Score=33.54 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|++.|||..+.|-.|+|++|+..|.
T Consensus 75 ~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 75 DALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp HHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred HHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 34789999999999999999999999885
No 26
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.02 E-value=0.066 Score=33.18 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|+++|||..+.|-.|+|.+|+.++.-.
T Consensus 68 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 68 ADRAREKLHGTVVEGRKIEVNNATARVMTN 97 (103)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCSSCCCC
T ss_pred HHHHHHHhCCCEECCEEEEEEEcccCCCCC
Confidence 467889999999999999999999988744
No 27
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.02 E-value=0.069 Score=33.00 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|++.|||..+.|-.|+|.+|+.++.
T Consensus 65 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 65 DAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp HHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred HHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 34788999999999999999999998865
No 28
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.00 E-value=0.066 Score=32.46 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=22.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeec
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiAR 44 (106)
-++|++.|||..+.|-.|+|++||
T Consensus 71 A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 71 AQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHHHHHcCCCeeCCcEEEEEecC
Confidence 467889999999999999999997
No 29
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=92.99 E-value=0.064 Score=33.71 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
.-++|+++|||..+.|-.|+|++|+.++
T Consensus 69 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 69 SVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp HHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 3578899999999999999999998765
No 30
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.94 E-value=0.067 Score=33.00 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=25.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+..+.
T Consensus 67 A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 67 AKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred HHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 4688999999999999999999987665
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=92.91 E-value=0.067 Score=33.22 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=24.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|++.|||..+.|-.|+|++|+.+|
T Consensus 78 a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 78 AQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred HHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 468899999999999999999999876
No 32
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.83 E-value=0.072 Score=32.45 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=24.9
Q ss_pred HHHHHHHhcC-ceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNG-THVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnG-t~V~gIqLKVSiARRQP~ 48 (106)
-++|+++||| ..+.|-.|+|++|+.++.
T Consensus 57 A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 57 AIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp HHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred HHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 4688999999 999999999999987665
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=92.71 E-value=0.066 Score=34.90 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|+++|||+.+.|-.|+|.+|++..
T Consensus 61 A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 61 AKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred HHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 468899999999999999999997643
No 34
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.66 E-value=0.068 Score=33.66 Aligned_cols=29 Identities=38% Similarity=0.469 Sum_probs=25.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.|||..+.|-.|+|++|+..+..
T Consensus 78 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 78 AKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp HHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred HHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 46789999999999999999999988763
No 35
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.61 E-value=0.1 Score=31.94 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
.-++|+++|||..+.|-.|+|.+|+..+
T Consensus 69 ~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 69 EATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp HHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred HHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 3578899999999999999999998654
No 36
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.58 E-value=0.099 Score=32.21 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.|||..+.|-.|+|++|+.++.-
T Consensus 67 A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 67 AAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp HHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 46788899999999999999999987763
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.55 E-value=0.1 Score=32.30 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=25.4
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|.+|+.++.
T Consensus 70 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 70 AARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp HHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred HHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 4678899999999999999999998876
No 38
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.42 E-value=0.063 Score=33.29 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=25.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+.++.
T Consensus 68 A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 68 ATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred HHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 4688899999999999999999998765
No 39
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=92.39 E-value=0.12 Score=33.46 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=25.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+..+.
T Consensus 61 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp HHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred HHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 4678899999999999999999998775
No 40
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=92.38 E-value=0.086 Score=32.55 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=25.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+..+.
T Consensus 50 a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 50 AEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp HHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred HHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 4678899999999999999999998874
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=92.35 E-value=0.081 Score=33.52 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=26.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|+++|||..+.|-.|+|++|+.++.-.
T Consensus 80 a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 80 AQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 109 (115)
T ss_dssp HHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred HHHHHHHcCCCEECCEEEEEEEcCCCCcCC
Confidence 467889999999999999999999876633
No 42
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.22 E-value=0.067 Score=32.51 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.|||..+.|-.|+|.+|+.++.-
T Consensus 55 A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 55 AEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp HHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred HHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 47888999999999999999999988773
No 43
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.21 E-value=0.067 Score=33.06 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
.-++|++.|||..+.|-.|+|++|+.++.+.
T Consensus 63 ~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 93 (99)
T 2cpj_A 63 LAEIAKVELDNMPLRGKQLRVRFACHSASLT 93 (99)
T ss_dssp HHHHHHHHHTTCCBTTBCCEEEESSCCSCCC
T ss_pred HHHHHHHHhCCCEeCCceEEEEEcCCCCCCC
Confidence 3577899999999999999999999988755
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=92.18 E-value=0.085 Score=33.30 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=26.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.|||..+.|-.|+|.+|+..+.-
T Consensus 70 a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 70 AENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp HHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred HHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 46788999999999999999999988764
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.98 E-value=0.12 Score=31.45 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=25.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+.++.
T Consensus 61 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 61 SDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp HHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 4678899999999999999999998775
No 46
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.93 E-value=0.11 Score=31.37 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARR 45 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARR 45 (106)
-++|+++|||..+.|-.|+|++|+.
T Consensus 70 A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 70 AKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHHHHHHTTEEETTEEEEEECCSC
T ss_pred HHHHHHHhCCCEECCEEEEEEecCC
Confidence 4678899999999999999999974
No 47
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=91.89 E-value=0.13 Score=32.09 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=25.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+.++.
T Consensus 58 a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 58 AVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp HHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred HHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 4788999999999999999999988766
No 48
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.88 E-value=0.19 Score=31.73 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCceeee-----eEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQG-----VKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~g-----IqLKVSiARRQP~ 48 (106)
..++|+++|||..+.| -.|+|.+|+..+.
T Consensus 62 ~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 62 DMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp HHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred HHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 4578999999999999 9999999987554
No 49
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.76 E-value=0.17 Score=30.65 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
..++|++ |||..+.|-.|+|.+|+.+|.
T Consensus 62 ~a~~A~~-~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 62 EVKQALK-CNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp HHHHHHH-SCSEEETTEEEEEEEESSCCC
T ss_pred HHHHHHH-hCCceeCCcEEEEEECCcCCC
Confidence 3467888 999999999999999999875
No 50
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.71 E-value=0.13 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHHHHHHh-cCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKV-NGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~em-nGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|++.| ||..+.|-.|+|++|+.++..+
T Consensus 71 a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 71 AKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp HHHHHHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred HHHHHHHhccCCeECCCEEEEEeCCCCCCCC
Confidence 46889999 9999999999999999988755
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=91.67 E-value=0.084 Score=31.85 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|+++|||..+.|-.|+|++|+.+..
T Consensus 60 ~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 60 VAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp HHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred HHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 34678899999999999999999988654
No 52
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.67 E-value=0.14 Score=31.69 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|.+|+.++.
T Consensus 68 a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 68 AAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp HHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred HHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 4678899999999999999999998765
No 53
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=91.64 E-value=0.14 Score=32.84 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|++.|||..+.|-.|+|++|+.++.
T Consensus 77 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 77 SAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp HHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred HHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 35788999999999999999999998764
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.62 E-value=0.095 Score=32.07 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=25.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.|||..+.|-.|+|++|+..+.-
T Consensus 63 a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 63 AQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp HHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred HHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 46788999999999999999999987763
No 55
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=91.58 E-value=0.11 Score=31.73 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|++.|||..+.|-.|+|.+|+.++.
T Consensus 65 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 65 DAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp HHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred HHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 35788999999999999999999987654
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.56 E-value=0.11 Score=31.43 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|++|+.++.
T Consensus 60 a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 60 ARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp HHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred HHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 4678899999999999999999998776
No 57
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=91.54 E-value=0.077 Score=32.47 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=21.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|++.|||..+.|-.|+|+.|+..|...
T Consensus 58 a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~~ 87 (90)
T 3p5t_L 58 SKKLMDLLPKRELHGQNPVVTPSNKLEHHH 87 (90)
T ss_dssp HHHHHHHGGGSCSSSCCCEECCC-------
T ss_pred HHHHHHHcCCCeeCCEEEEEEECCCCcccc
Confidence 457899999999999999999999877643
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.53 E-value=0.16 Score=31.82 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|+++|||..+.|-.|+|++|+..+.
T Consensus 73 ~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 73 DAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp HHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred HHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 34788999999999999999999987664
No 59
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.47 E-value=0.078 Score=32.69 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=25.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|++|+..+.
T Consensus 67 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 67 AKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp HHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred HHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 4678899999999999999999998775
No 60
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.42 E-value=0.087 Score=32.64 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=24.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|.+|+..+.
T Consensus 68 A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 68 AQDAEAAMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp HHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred HHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence 4678899999999999999999997654
No 61
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.27 E-value=0.051 Score=33.54 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=26.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVAP 51 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld~ 51 (106)
-++|++.|||..+.|-.|+|++|+.+..-..
T Consensus 63 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 93 (104)
T 1p1t_A 63 ALSAMRNLNGREFSGRALRVDNAASEKNKEE 93 (104)
T ss_dssp HHHHHHHSSSBSCSSSCBEEEETTCTTHHHH
T ss_pred HHHHHHHhCCCeeCCcEEEEEeCCCccchhh
Confidence 4678899999999999999999998877553
No 62
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=91.21 E-value=0.11 Score=32.67 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=24.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|.+|+....
T Consensus 75 A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 75 ARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 4688999999999999999999986543
No 63
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=91.16 E-value=0.12 Score=33.84 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
..++|+++|||..+.|-.|+|++|+..|
T Consensus 148 ~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 148 DAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 3568899999999999999999998654
No 64
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=91.15 E-value=0.092 Score=33.28 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.4
Q ss_pred HHHHHHHhcCceeeeeEEEeeeec
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiAR 44 (106)
-++++++|||..+.|-.|+|++||
T Consensus 95 A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 95 AQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp HHHHHHHCCCCEETTEECCEEEC-
T ss_pred HHHHHHHcCCCEECCEEEEEEecC
Confidence 478899999999999999999997
No 65
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=90.87 E-value=0.26 Score=31.65 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=26.5
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|++.|||..+.|-.|+|++|...+...
T Consensus 89 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 89 ALKAMKQYKGVPLDGRPMDIQLVASQIDLE 118 (124)
T ss_dssp HHHHHHHHTTEESSSCEEEEEEECCTTCCC
T ss_pred HHHHHHHcCCCEECCcEEEEEEeCCCCCCC
Confidence 467899999999999999999999877654
No 66
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.87 E-value=0.094 Score=35.66 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=19.4
Q ss_pred HHHHHhcCceeeeeEEEeeeecc
Q psy15193 23 KLKRKVNGTHVQGVKLKVSLARR 45 (106)
Q Consensus 23 klk~emnGt~V~gIqLKVSiARR 45 (106)
+|+. |||..|+|-.|||++|+.
T Consensus 64 aAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 64 NVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHh-cCCeEeCCeEEEEEeCCC
Confidence 4565 999999999999999984
No 67
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=90.86 E-value=0.099 Score=32.28 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=23.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQ 46 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQ 46 (106)
-++|++.|||..+.|-.|+|+.|+.+
T Consensus 76 A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 76 AAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp HHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred HHHHHHHhCCCeECCeEEEEEeccCC
Confidence 46888999999999999999999853
No 68
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.84 E-value=0.16 Score=31.86 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|+++|||..+.|-.|+|.+|++...
T Consensus 68 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 68 EAVQAISMFNGQLLFDRPMHVKMDERALP 96 (114)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECSCCCC
T ss_pred HHHHHHHHhCCCEeCCCEEEEEEcccCCC
Confidence 34678899999999999999999986543
No 69
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.72 E-value=0.11 Score=32.64 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.|||..+.|-.|+|++|+.++.-
T Consensus 80 a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 80 AWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp HHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred HHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 46788999999999999999999987763
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=90.68 E-value=0.098 Score=33.55 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|++.|||..+.|-.|+|++|+.++
T Consensus 81 A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 81 AKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp HHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred HHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 467889999999999999999998764
No 71
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=90.62 E-value=0.25 Score=32.10 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=24.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|++|+..+.
T Consensus 97 a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 97 AQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp HHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred HHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 4678899999999999999999997765
No 72
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.55 E-value=0.22 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.052 Sum_probs=26.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|++.|||..+.|-.|+|.+|+...+..
T Consensus 59 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 88 (111)
T 1whx_A 59 ARKAFRHLAYSKFHHVPLYLEWAPIGVFGA 88 (111)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEEEETTTTCC
T ss_pred HHHHHHHhCCCEECCeEEEEEECCCCccCC
Confidence 478899999999999999999999877754
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=90.49 E-value=0.17 Score=31.17 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeec
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiAR 44 (106)
-++|++.|||..+.|-.|+|++|+
T Consensus 76 a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 76 AKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHhCCCEeCCcEEEEEecC
Confidence 467889999999999999999986
No 74
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=90.39 E-value=0.24 Score=31.78 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=24.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|+.|+.++.
T Consensus 58 A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 58 AERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp HHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred HHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 4678999999999999999999986543
No 75
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=90.39 E-value=0.13 Score=32.96 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=25.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+.++.
T Consensus 77 a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 77 AQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred HHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 4678899999999999999999987776
No 76
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=90.31 E-value=0.16 Score=30.69 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.4
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARR 45 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARR 45 (106)
-++|++.|||..+.|-.|+|++|+.
T Consensus 70 a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 70 VSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp HHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHhCCCEECCCEEEEEEcCC
Confidence 4678999999999999999999973
No 77
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.24 E-value=0.18 Score=32.90 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCc--eeeeeEEEeeeeccccccccccccc
Q psy15193 20 KYQKLKRKVNGT--HVQGVKLKVSLARRQLKVAPINDAA 56 (106)
Q Consensus 20 ~~qklk~emnGt--~V~gIqLKVSiARRQP~ld~indA~ 56 (106)
.-++|++.|||. .+.|-.|+|++|++++.-.|.|+..
T Consensus 63 ~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~~~~~~~ 101 (104)
T 1wex_A 63 SAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGP 101 (104)
T ss_dssp HHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCCSCC
T ss_pred HHHHHHHHhccCCceECCEEEEEEEccCccccCCCCCCC
Confidence 346788888765 4999999999999998877777643
No 78
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.20 E-value=0.24 Score=33.81 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=26.9
Q ss_pred HHHHHHHhcCcee-----eeeEEEeeeecccccccc
Q psy15193 21 YQKLKRKVNGTHV-----QGVKLKVSLARRQLKVAP 51 (106)
Q Consensus 21 ~qklk~emnGt~V-----~gIqLKVSiARRQP~ld~ 51 (106)
-++|+++|||+.+ .|..|.|.+|+.-|...|
T Consensus 76 A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 76 SKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWSGP 111 (114)
T ss_dssp HHHHHHHTTTCEEECTTSCEEECEEEEESCCCCSSC
T ss_pred HHHHHHHhCCCEEccccCCCcEEEEEecccCcccCC
Confidence 4688999999999 799999999998887553
No 79
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.10 E-value=0.13 Score=30.60 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.6
Q ss_pred HHHHHHHh-cCceeeeeEEEeeeec
Q psy15193 21 YQKLKRKV-NGTHVQGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~em-nGt~V~gIqLKVSiAR 44 (106)
-++|+++| ||..+.|-.|+|+.||
T Consensus 61 A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 61 AEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHHhcCCeeECCCEEEEEecC
Confidence 46788889 9999999999999997
No 80
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=89.94 E-value=0.11 Score=32.10 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|+++|||..+.|-.|+|.+|+..+.
T Consensus 57 ~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 57 SVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp HHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred HHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 35788999999999999999999987665
No 81
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=89.88 E-value=0.21 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeec
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiAR 44 (106)
-++|+++|||..+.|-.|+|++|.
T Consensus 83 a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 83 ALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHhCCCEeCCcEEEEEEeC
Confidence 467899999999999999999985
No 82
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=89.50 E-value=0.23 Score=32.63 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQ 46 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQ 46 (106)
-++|++.|||..+.|-.|+|++|+..
T Consensus 105 A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 105 AAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 46788999999999999999999764
No 83
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=89.25 E-value=0.084 Score=31.83 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=21.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|++.|||..+.|-.|+|+.|...+...
T Consensus 55 a~~a~~~l~g~~~~g~~l~V~~a~~~~~~~ 84 (90)
T 2ki2_A 55 VSEAIAKLDNTDFMGRTIRVTEANPKKSLE 84 (90)
T ss_dssp HHHHHHTSCSSCCSSSSCSEEEC-------
T ss_pred HHHHHHHhCCCEECCeEEEEEEcCCCCCCC
Confidence 357889999999999999999999887644
No 84
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.25 E-value=0.19 Score=30.60 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQ 46 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQ 46 (106)
-++|+++|||..+.|-.|+|++|+..
T Consensus 67 a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 67 ARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 46788999999999999999999865
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=89.18 E-value=0.31 Score=32.16 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|++|+.+.-
T Consensus 125 a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 125 AEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 4678999999999999999999987643
No 86
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=89.10 E-value=0.24 Score=35.31 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.8
Q ss_pred HHHHHHHhcCceee-eeEEEeeeecc
Q psy15193 21 YQKLKRKVNGTHVQ-GVKLKVSLARR 45 (106)
Q Consensus 21 ~qklk~emnGt~V~-gIqLKVSiARR 45 (106)
-++|++.|||..+. |-.|+|++|||
T Consensus 257 A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 257 AGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred HHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 46789999999999 99999999986
No 87
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=89.07 E-value=0.32 Score=32.94 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|+..|||..+.|-.|+|.+|+.++.
T Consensus 126 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 126 QALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 35678999999999999999999998765
No 88
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.96 E-value=0.24 Score=30.56 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
.-++|++.|||..+.|-.|+|++|+..+.-
T Consensus 69 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 69 DADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp HHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred HHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 347888999999999999999999987763
No 89
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.69 E-value=0.36 Score=29.91 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
..++|+ +|||..+.|-.|+|.+|+..+.
T Consensus 69 ~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 69 SLLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp HHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred HHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 356788 9999999999999999998766
No 90
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=88.46 E-value=0.29 Score=30.21 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCceeee---eEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQG---VKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~g---IqLKVSiARRQP~ 48 (106)
.-++|++.|||..+.| -.|+|.+|+.++.
T Consensus 68 ~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 68 EAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp HHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred HHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 3568899999999998 9999999988765
No 91
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.36 E-value=0.23 Score=30.34 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.2
Q ss_pred HHHHHHHhcCceeeeeE----EEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVK----LKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIq----LKVSiARRQP~ 48 (106)
-++|++.|||..+.|-. |+|+.|+.+..
T Consensus 65 a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 65 AEKCLHKINGKPLPGATPAKRFKLNYATYSGP 96 (99)
T ss_dssp HHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred HHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence 46788999999999999 99999987653
No 92
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=88.01 E-value=0.15 Score=34.08 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=25.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+.++-
T Consensus 102 A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 102 AEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp HHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred HHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 4678899999999999999999998765
No 93
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=87.91 E-value=0.43 Score=33.26 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=24.3
Q ss_pred HHHHHHHhcCceeee--eEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQG--VKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~g--IqLKVSiARRQP~ 48 (106)
-++|++.|||..+.| +.|+|.+||..-.
T Consensus 79 A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 79 AQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp HHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred HHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 468999999999998 9999999997643
No 94
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=87.85 E-value=0.18 Score=34.13 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.|||..+.|-.|+|++|+.++..
T Consensus 85 A~~Ai~~lng~~l~gr~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 85 AQAFVEAFQGYPFQGNPLVITFSETPQSQ 113 (127)
T ss_dssp HHHHHHHSTTCCCTTSCCEEEECCCCCHH
T ss_pred HHHHHHHHCCCEeCCCEEEEEEccCcchh
Confidence 46789999999999999999999987653
No 95
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=87.82 E-value=0.26 Score=34.33 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|+++|||..+.|-.|+|+.|+....
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 34688999999999999999999976543
No 96
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=87.77 E-value=0.23 Score=32.89 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=23.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|+..|||..+.|-.|+|++|+.++
T Consensus 123 a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 123 AADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 467889999999999999999998764
No 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=87.16 E-value=0.29 Score=32.48 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=23.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|+++|||..+.|-.|+|++|+.++
T Consensus 101 A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 101 AKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp HHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred HHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 467899999999999999999998654
No 98
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=87.08 E-value=0.41 Score=31.72 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=24.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|++|+..+.
T Consensus 169 a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 169 TDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 4678889999999999999999986543
No 99
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=87.07 E-value=0.43 Score=32.02 Aligned_cols=29 Identities=21% Similarity=0.072 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
..++|+++|||..+.|-.|+|+.|+..|.
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 35788999999999999999999998766
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=87.03 E-value=0.28 Score=30.92 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=22.2
Q ss_pred HHHHHHHhcCceeeee-EEEeeeecc
Q psy15193 21 YQKLKRKVNGTHVQGV-KLKVSLARR 45 (106)
Q Consensus 21 ~qklk~emnGt~V~gI-qLKVSiARR 45 (106)
-++|++.|||..+.|- .|+|++|+.
T Consensus 74 A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 74 AVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp HHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred HHHHHHHhCCcccCCCceEEEEEcch
Confidence 4678999999999998 999999974
No 101
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=87.01 E-value=0.27 Score=30.83 Aligned_cols=25 Identities=12% Similarity=0.196 Sum_probs=22.2
Q ss_pred HHHHHHHhcCceeee-eEEEeeeecc
Q psy15193 21 YQKLKRKVNGTHVQG-VKLKVSLARR 45 (106)
Q Consensus 21 ~qklk~emnGt~V~g-IqLKVSiARR 45 (106)
-++|++.|||..+.| -.|+|++|+.
T Consensus 67 A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 67 AKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHhCCcccCCCeEEEEEECch
Confidence 467889999999999 9999999964
No 102
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=86.96 E-value=0.22 Score=30.68 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++ |||..+.|-.|+|++|+.++.
T Consensus 71 a~~A~~-l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 71 LEKALE-LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp HHHHHH-GGGCCBTTBCCEEECCSCCCC
T ss_pred HHHHHh-cCCcEECCcEEEEEEcCCCCC
Confidence 467787 999999999999999987654
No 103
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=86.79 E-value=0.45 Score=29.44 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|+ +|||..+.|-.|+|.+|+..+.
T Consensus 68 ~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 68 SLKEAL-TYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp HHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred HHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence 346777 8999999999999999987765
No 104
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=86.75 E-value=0.35 Score=33.06 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.2
Q ss_pred HHHHHHHhcCceeee--eEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQG--VKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~g--IqLKVSiARRQP 47 (106)
-++|++.|||..+.| +.|+|+.||..-
T Consensus 75 A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 75 AQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 467889999999987 799999998654
No 105
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.63 E-value=0.45 Score=31.26 Aligned_cols=31 Identities=23% Similarity=0.018 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeecccccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVAP 51 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld~ 51 (106)
..++|+ +|||..+.|-.|+|..|....++.+
T Consensus 68 ~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~~ 98 (109)
T 2dnn_A 68 DTFEAL-KRNRMLMIQRYVEVSPATERQWVAA 98 (109)
T ss_dssp HHHHHH-HTTTEEETTEEEEEEECCHHHHHHH
T ss_pred HHHHHH-hcCCCeECCeEEEEEECCccchhhc
Confidence 345677 7999999999999999998877663
No 106
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=86.62 E-value=0.34 Score=34.64 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=23.5
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|+ +|||..+.|-.|+|++|++.|
T Consensus 267 A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 267 AERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 46788 999999999999999999876
No 107
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.56 E-value=0.88 Score=28.13 Aligned_cols=31 Identities=32% Similarity=0.334 Sum_probs=26.4
Q ss_pred HHHHHHHHhc------CceeeeeEEEeeeeccccccc
Q psy15193 20 KYQKLKRKVN------GTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 20 ~~qklk~emn------Gt~V~gIqLKVSiARRQP~ld 50 (106)
.-++|++.|| |..+.|-.|+|++|+.++.-.
T Consensus 69 ~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 69 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp HHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred HHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCC
Confidence 3478899999 999999999999999876643
No 108
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=86.52 E-value=0.59 Score=28.17 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeec
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiAR 44 (106)
.-++|+++|||..+.|-.|+|++|.
T Consensus 69 ~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 69 EATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHhCCCeECCcEEEEEecc
Confidence 3567899999999999999999885
No 109
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=86.49 E-value=0.43 Score=31.72 Aligned_cols=28 Identities=14% Similarity=0.187 Sum_probs=24.4
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+..+.
T Consensus 94 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 94 AENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp HHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred HHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 4678899999999999999999986544
No 110
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.42 E-value=0.31 Score=30.72 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=24.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.++|+ +|||..+.|-.|+|++|+..+.
T Consensus 80 a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 106 (114)
T 2cq4_A 80 VPLAI-GLTGQRLLGVPIIVQASQAEKN 106 (114)
T ss_dssp HHHHH-HHTTEEETTEEEEEEEHHHHHH
T ss_pred HHHHH-HcCCCEeCCeEEEEEecCCCcc
Confidence 46788 9999999999999999988765
No 111
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=86.22 E-value=0.51 Score=29.12 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=24.8
Q ss_pred HHHHHHHhcCcee---eeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHV---QGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V---~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+ .|-.|+|+.|+.+..
T Consensus 68 A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 68 ALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp HHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred HHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 4688999999998 999999999988765
No 112
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=86.17 E-value=0.44 Score=32.86 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=24.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|+.|+++..
T Consensus 112 A~~Ai~~lng~~~~Gr~l~V~~a~~~~~ 139 (156)
T 3n9u_C 112 VHKLLELLPGKVLNGEKVDVRPATRQNL 139 (156)
T ss_dssp HHHHHHHSTTCEETTEECEEEECCHHHH
T ss_pred HHHHHHHcCCCEECCeEeEEEEcCCCcc
Confidence 4688999999999999999999987654
No 113
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=85.90 E-value=0.5 Score=30.26 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.6
Q ss_pred HHHHHHHhcCc----eeeeeEEEeeeecc
Q psy15193 21 YQKLKRKVNGT----HVQGVKLKVSLARR 45 (106)
Q Consensus 21 ~qklk~emnGt----~V~gIqLKVSiARR 45 (106)
-++|++.|||+ .++|-.|+|++||.
T Consensus 66 A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 66 ASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 36788999998 59999999999984
No 114
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=85.79 E-value=0.29 Score=32.90 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=23.3
Q ss_pred HHHHHHHhcCceee-eeEEEeeeeccc
Q psy15193 21 YQKLKRKVNGTHVQ-GVKLKVSLARRQ 46 (106)
Q Consensus 21 ~qklk~emnGt~V~-gIqLKVSiARRQ 46 (106)
-++|++.|||..+. |-.|+|++|+.+
T Consensus 171 A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 171 AVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 46788999999999 999999999865
No 115
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=85.58 E-value=0.56 Score=29.82 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+ +|||..+.|-.|+|++|+..+-
T Consensus 91 a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 91 VDAAV-AMDETVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp HHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred HHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence 45677 8999999999999999986543
No 116
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=85.34 E-value=0.37 Score=29.99 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
..++|+ +|||..+.|-.|+|+.|+..+
T Consensus 73 ~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 73 SLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp HHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred HHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 346778 899999999999999998754
No 117
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=85.27 E-value=0.4 Score=28.50 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARR 45 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARR 45 (106)
-++|+ +|||..+.|-.|+|+.||.
T Consensus 61 a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 61 VRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHHHG-GGTTCEETTEECEEEETTT
T ss_pred HHHHH-hcCCCEECCcEEEEEEccC
Confidence 35677 8999999999999999985
No 118
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.23 E-value=0.24 Score=30.57 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=24.3
Q ss_pred HHHHHHHhcCce-eeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTH-VQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~-V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||.. +.|-.|+|++|+..+.
T Consensus 64 a~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 64 QKRALTECQGAVGLGSKPVRLSVAIPKAS 92 (104)
T ss_dssp HHHHHHHTTTCCSSSSSCCCCCBCCCCCS
T ss_pred HHHHHHHccCCcccCCEeEEEEEccCCCc
Confidence 467889999999 9999999999977654
No 119
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=85.13 E-value=0.52 Score=33.51 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+.+..
T Consensus 55 A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 55 VDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp HHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred HHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 4679999999999999999999997654
No 120
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=85.10 E-value=0.33 Score=31.23 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCceeee--eEEEeeee
Q psy15193 20 KYQKLKRKVNGTHVQG--VKLKVSLA 43 (106)
Q Consensus 20 ~~qklk~emnGt~V~g--IqLKVSiA 43 (106)
..++|+++|||..+.| ..|+|++|
T Consensus 143 ~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 143 EAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 4578899999999977 99999987
No 121
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=85.09 E-value=0.5 Score=29.28 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHh-cCceeeeeEEEeeeeccccccc
Q psy15193 22 QKLKRKV-NGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 22 qklk~em-nGt~V~gIqLKVSiARRQP~ld 50 (106)
++|++.| ||..+.|-+|+|++|+.+|..+
T Consensus 58 ~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 58 TRWMEANQHSLNILGQKVSMHYSDPKPKIN 87 (91)
T ss_dssp HHHHHTTTTEEEETTEEEEEECCCSCCCCS
T ss_pred HHHHHhcCCCeEECCEEEEEEEcCCCCCCC
Confidence 4566666 5678999999999999888754
No 122
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=84.97 E-value=0.55 Score=30.40 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeee
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLA 43 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiA 43 (106)
-++|+++|||..+.|-.|+|+.|
T Consensus 149 A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 149 TDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHcCCCEECCeEEEEEeC
Confidence 46889999999999999999987
No 123
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.85 E-value=0.46 Score=29.44 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=25.1
Q ss_pred HHHHHHHhc--CceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVN--GTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emn--Gt~V~gIqLKVSiARRQP~ld 50 (106)
-++|++.|| +..+.|-.|+|.+|+.++..+
T Consensus 65 A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~~ 96 (109)
T 2dis_A 65 AAMARRKLMPGRIQLWGHQIAVDWAEPEIDVD 96 (109)
T ss_dssp HHHHHTTTTTCCSCBTTBCCEEEESCSSCSTT
T ss_pred HHHHHHHhhCCCceecCCeEEEEEcCCCCCcC
Confidence 467888996 599999999999999887654
No 124
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=84.58 E-value=0.46 Score=29.82 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=24.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+..|||..+.|-.|+|++|+....
T Consensus 60 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 60 AKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp HHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred HHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 4678899999999999999999986544
No 125
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=84.41 E-value=0.63 Score=31.25 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=21.4
Q ss_pred HHHHHHHhcCceeeeeEEEeeee
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLA 43 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiA 43 (106)
-++|++.|||..+.|-.|+|.+|
T Consensus 56 A~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 56 ANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp HHHHHHHHTTEEETTEEEEEECC
T ss_pred HHHHHHHhcCCEECCcEEEEEEC
Confidence 46889999999999999999999
No 126
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=84.29 E-value=0.46 Score=33.39 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=23.3
Q ss_pred HHHHHHHhcCceee-eeEEEeeeeccc
Q psy15193 21 YQKLKRKVNGTHVQ-GVKLKVSLARRQ 46 (106)
Q Consensus 21 ~qklk~emnGt~V~-gIqLKVSiARRQ 46 (106)
-++|+++|||..+. |-.|+|++|+.+
T Consensus 202 A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 202 AVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 46788999999999 999999999865
No 127
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.93 E-value=0.76 Score=28.07 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=24.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|++ |||..+.|-.|+|++|+.++.-.
T Consensus 65 a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 65 VDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp HHHHHH-HCCCBSSSCBCEEEECCCCCCCC
T ss_pred HHHHHH-hCCCEECCeEEEEEECCCCcccC
Confidence 456776 99999999999999999877633
No 128
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=83.93 E-value=0.66 Score=29.64 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCceeeeeEEEeeee
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLA 43 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiA 43 (106)
.-++|++.|||..+.|-.|+|++|
T Consensus 117 ~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 117 DAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHHHhCCCEECCEEEEEEeC
Confidence 357889999999999999999987
No 129
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.60 E-value=0.66 Score=29.57 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=23.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|++|+..+.
T Consensus 77 A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 77 ADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 4678999999999999999999976543
No 130
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=83.51 E-value=0.59 Score=29.74 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.7
Q ss_pred HHHHHHHhcCceeee--eEEEeeee
Q psy15193 21 YQKLKRKVNGTHVQG--VKLKVSLA 43 (106)
Q Consensus 21 ~qklk~emnGt~V~g--IqLKVSiA 43 (106)
-++|+++|||..+.| +.|+|+.|
T Consensus 143 A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 143 AEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCccCCCccceEEEeC
Confidence 567899999999999 67888876
No 131
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.43 E-value=0.64 Score=31.84 Aligned_cols=29 Identities=14% Similarity=0.391 Sum_probs=26.2
Q ss_pred HHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
+.|+++|||..+-|=.++|++|+..+-+-
T Consensus 60 ~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 60 ERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp HHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred HHHHHHhcCCccCCceEEEEecCCCccee
Confidence 58999999999999999999999888644
No 132
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=83.39 E-value=0.71 Score=30.02 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=24.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||....|-.|+|++|+..-+
T Consensus 69 A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f 96 (105)
T 2pe8_A 69 AIKAVVDLNGRYFGGRVVKACFYNLDKF 96 (105)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCHHHH
T ss_pred HHHHHHHHCCCEECCcEEEEEEcCHHHh
Confidence 4689999999999999999999976443
No 133
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=83.21 E-value=0.27 Score=35.83 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
.++|+++|||+.+.|-.|+|++|+++-
T Consensus 125 a~~Ai~~lng~~~~Gr~l~V~~a~~~~ 151 (229)
T 3q2s_C 125 SKKLMDLLPKRELHGQNPVVTPVNKQF 151 (229)
T ss_dssp HHHHHTTSTTSCBTTBCCEEEECCHHH
T ss_pred HHHHHHHcCCCeECCEEeEEEECCCCc
Confidence 467899999999999999999998764
No 134
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=82.48 E-value=0.84 Score=32.46 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|++|+..+.
T Consensus 239 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 239 AEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 4678999999999999999999987664
No 135
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.52 E-value=0.86 Score=29.90 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=24.2
Q ss_pred HHHHHHHhcCc--eeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGT--HVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt--~V~gIqLKVSiARRQP~ld 50 (106)
-++|++.|||. .+.|-.|+|++|++.+.+.
T Consensus 65 A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 96 (102)
T 1x4d_A 65 AQAAVDYYTTTPALVFGKPVRVHLSQKYKRIK 96 (102)
T ss_dssp HHHHHHHHHHSCCEETTEECEEEEECCCTTSS
T ss_pred HHHHHHHHcCCCceECCcEEEEEECCCCCCCC
Confidence 46788888865 5999999999999776654
No 136
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=81.39 E-value=1.7 Score=34.81 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=24.5
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.++|+..|||..+.|-.|+|.+|+..+.
T Consensus 157 A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 157 MHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 4678889999999999999999986654
No 137
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=80.89 E-value=0.69 Score=33.60 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=23.8
Q ss_pred HHHHHHHhcCceeee--eEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQG--VKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~g--IqLKVSiARRQP~ 48 (106)
-++|++.|||..+.| ..|+|++||....
T Consensus 97 A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 97 AQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp HHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred HHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 467899999999965 9999999997643
No 138
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=80.62 E-value=1.2 Score=31.67 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|..|+|..|+..+.
T Consensus 65 a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 65 ATNALRSMQGFPFYDKPMRIQYAKTDSD 92 (282)
T ss_pred HHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence 3678899999999999999999988764
No 139
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=80.35 E-value=1.2 Score=28.29 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=23.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|+.|+..+.
T Consensus 57 A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 57 AEKAINTLNGLRLQTKTIKVSYARPSSA 84 (167)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred HHHHHHHcCCCccCCceEEEEecCCCcc
Confidence 4678889999999999999999986543
No 140
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=79.17 E-value=1.1 Score=29.91 Aligned_cols=29 Identities=7% Similarity=0.003 Sum_probs=24.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.|||...+|=.|+|+++...-+.
T Consensus 68 A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 68 AIAAVNALHGRWFAGKMITAAYVPLPTYH 96 (114)
T ss_dssp HHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred HHHHHHHhCCCEECCEEEEEEEEcHHHHH
Confidence 46899999999999999999999765543
No 141
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=78.82 E-value=1.3 Score=28.63 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=24.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||....|=.|+|+++....+
T Consensus 72 A~~Ai~~lnG~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 72 CQKAMQGLTGRKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp HHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred HHHHHHHhCCCEeCCCEEEEEEeCHHHH
Confidence 4689999999999999999999865544
No 142
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.82 E-value=2 Score=27.68 Aligned_cols=29 Identities=3% Similarity=-0.003 Sum_probs=23.6
Q ss_pred HHHHHHHh--cCceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKV--NGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~em--nGt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.| ++..+.|-.|+|++|+.+++-
T Consensus 64 A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 64 AITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp HHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred HHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 45677766 577899999999999998873
No 143
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=78.68 E-value=1.1 Score=28.90 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeee
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLA 43 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiA 43 (106)
-++|++.|||..+.|=.|+|++|
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHHCCCEECCEEEEEEEc
Confidence 46789999999999999999876
No 144
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=77.84 E-value=4.6 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.0
Q ss_pred HHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
++|+ +|||..+.|-.|+|..|+....
T Consensus 65 ~~Al-~l~g~~~~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 65 TQAM-AFDGIIFQGQSLKIRRPHDYQP 90 (198)
T ss_dssp HHHG-GGTTEEETTEEEEEECCCCCCC
T ss_pred HHHH-HhcCCEEcCceEEEeCCCCCCC
Confidence 5667 8999999999999999987643
No 145
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=77.73 E-value=1.1 Score=30.07 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|..|+.++.
T Consensus 54 a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 54 AQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp HHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred HHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 4678889999999999999999998753
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=77.57 E-value=1.6 Score=27.90 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=23.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|+.|+.++.
T Consensus 58 A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 58 SQRAIKVLNGITVRNKRLKVSYARPGGE 85 (168)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCCSS
T ss_pred HHHHHHhcCCCEeCCcEEEEEecCCCcc
Confidence 4577889999999999999999986543
No 147
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.35 E-value=2.1 Score=26.82 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.||+ .+.|-.|+|.+|+..+.
T Consensus 72 a~~Ai~~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 72 AERACKDPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp HHHHHTCSSC-EETTEECEEEESTTTCC
T ss_pred HHHHHHhCCC-cCCCEEEEEEEcccCCC
Confidence 4678899999 89999999999977544
No 148
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=76.67 E-value=0.8 Score=29.84 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=22.9
Q ss_pred HHHHHHHhcCc----eeeeeEEEeeeeccc
Q psy15193 21 YQKLKRKVNGT----HVQGVKLKVSLARRQ 46 (106)
Q Consensus 21 ~qklk~emnGt----~V~gIqLKVSiARRQ 46 (106)
-++++..|||. .+.|-.|+|++|+..
T Consensus 79 a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 79 AAQLLQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp HHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred HHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence 35788999999 999999999999754
No 149
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=76.27 E-value=1.8 Score=30.22 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=25.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|+++|||..+.|-.|+|.+|...+...
T Consensus 142 A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~~ 171 (177)
T 2f3j_A 142 ALKAMKQYKGVPLDGRPMDIQLVASQIDLE 171 (177)
T ss_dssp HHHHHHHSTTCBCSSSBCEEEEESSGGGGC
T ss_pred HHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 468899999999999999999998776644
No 150
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.47 E-value=0.51 Score=27.97 Aligned_cols=24 Identities=25% Similarity=0.079 Sum_probs=20.4
Q ss_pred HHHHHHHhcCceeeeeEEEeeeec
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiAR 44 (106)
-++|+++|||..+.|-.|||+-+|
T Consensus 60 a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 60 AQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHHHHHhcCCeEeeEEEeecCCC
Confidence 467889999999999988888765
No 151
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=74.10 E-value=1.5 Score=29.22 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCce--eeeeEEEeeeecccc
Q psy15193 20 KYQKLKRKVNGTH--VQGVKLKVSLARRQL 47 (106)
Q Consensus 20 ~~qklk~emnGt~--V~gIqLKVSiARRQP 47 (106)
.-++|++.|||.. +.|-.|+|++|++|=
T Consensus 69 ~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 69 GACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 3568899999986 779999999999874
No 152
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=73.94 E-value=3.3 Score=26.19 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.-++|++.|||..+.|-.|+|..|+..+.
T Consensus 53 ~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 53 DANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred HHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 34678889999999999999999977654
No 153
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.85 E-value=2.1 Score=28.58 Aligned_cols=29 Identities=3% Similarity=0.060 Sum_probs=24.4
Q ss_pred HHHHHHHhc--CceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVN--GTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emn--Gt~V~gIqLKVSiARRQP~l 49 (106)
-++|++.|+ |..+.|-.|+|++|+.++.-
T Consensus 65 A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 65 ANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred HHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 467888886 47899999999999998873
No 154
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.48 E-value=0.57 Score=30.19 Aligned_cols=30 Identities=7% Similarity=-0.011 Sum_probs=25.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVAP 51 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld~ 51 (106)
.++|++ |||..+.|-.|+|..|.++.+++.
T Consensus 80 a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~~ 109 (124)
T 1wel_A 80 YKAALC-RHKQYMGNRFIQVHPITKKGMLEK 109 (124)
T ss_dssp HHHHHT-SCSBCSTTSCBEEEEECHHHHHHH
T ss_pred HHHHHH-hCCCeECCcEEEEEECCHHHHHHH
Confidence 467788 999999999999999999887653
No 155
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.47 E-value=2.8 Score=25.74 Aligned_cols=27 Identities=4% Similarity=-0.025 Sum_probs=22.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++. ||..+.|-.|+|..|+..+.
T Consensus 71 a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 71 VGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp HHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred HHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 3567777 99999999999999987765
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.12 E-value=1.7 Score=26.39 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=22.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.++|+. |||..+.|-.|+|..|.....
T Consensus 58 a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 58 REAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp HHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred HHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 467888 999999999999998875544
No 157
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.08 E-value=2.3 Score=28.83 Aligned_cols=30 Identities=3% Similarity=0.081 Sum_probs=24.7
Q ss_pred HHHHHHHhcC--ceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNG--THVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnG--t~V~gIqLKVSiARRQP~ld 50 (106)
-++|++.||| ..+.|-.|+|++|+.++.-.
T Consensus 80 A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 80 ANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp HHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred HHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 4678888875 68999999999999988743
No 158
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=71.72 E-value=4.8 Score=28.11 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.4
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|..|+.+..
T Consensus 85 A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 112 (229)
T 2adc_A 85 AQLAMSHLNGHKLHGKPIRITLSKHQNV 112 (229)
T ss_dssp HHHHHHHHTTCBCSSSBCEEECCSCCCC
T ss_pred HHHHHHHhCCCeECCeEEEEEEecCccc
Confidence 4678889999999999999999997743
No 159
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.44 E-value=2 Score=26.74 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.4
Q ss_pred HHHHHHHhcCcee--------eeeEEEeeeec
Q psy15193 21 YQKLKRKVNGTHV--------QGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~emnGt~V--------~gIqLKVSiAR 44 (106)
-++|++.|||..+ .+-.|+|++|+
T Consensus 79 a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 79 CEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 4678899999999 57779999887
No 160
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=70.26 E-value=2.7 Score=27.33 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.5
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+ +|||..+.|-.|+|+.|+..+.
T Consensus 67 a~~A~-~l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 67 LEKAL-ELTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp HHHHH-HGGGEEETTEEEEEECCCCSSC
T ss_pred HHHHH-hcCCCEeCCeEEEEecCCCccc
Confidence 35677 5999999999999999987654
No 161
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.91 E-value=2.4 Score=29.01 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.7
Q ss_pred HHHHHhcCceeeeeEEEeee
Q psy15193 23 KLKRKVNGTHVQGVKLKVSL 42 (106)
Q Consensus 23 klk~emnGt~V~gIqLKVSi 42 (106)
+|++ |||..|+|-.|||++
T Consensus 73 ~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 73 SVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp HHHH-GGGSEETTEEEEEEC
T ss_pred HHHh-cCCeeeCCeEEEEec
Confidence 4566 999999999999986
No 162
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=68.98 E-value=0.82 Score=27.12 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=18.0
Q ss_pred HHHHHHHhcCceeeee-EEEee
Q psy15193 21 YQKLKRKVNGTHVQGV-KLKVS 41 (106)
Q Consensus 21 ~qklk~emnGt~V~gI-qLKVS 41 (106)
-++|+++|||..+.|- .|+||
T Consensus 60 A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 60 AVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHHHHTTSSSCCCSSSSCCCCC
T ss_pred HHHHHHHhcCcccCCceeEEeC
Confidence 4678899999999998 88885
No 163
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=68.59 E-value=2.7 Score=27.04 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=22.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.++|++ |||..+.|-.|+|..|.+..+
T Consensus 74 a~~Al~-~~g~~~~gr~i~V~~a~~~~~ 100 (118)
T 2db1_A 74 VKLALK-KDRESMGHRYIEVFKSHRTEM 100 (118)
T ss_dssp HHHHGG-GTTEEETTEEEEEEEECHHHH
T ss_pred HHHHHh-cCCCeECCeEEEEEECCHHHH
Confidence 456777 899999999999999987664
No 164
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.32 E-value=3.6 Score=25.75 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=23.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++. ||..+.|-.|+|..|+.++-
T Consensus 82 a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 82 VDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp HHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred HHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 4667777 99999999999999988765
No 165
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=67.72 E-value=2.2 Score=32.39 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHHHHHHhcCcee------------eeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHV------------QGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V------------~gIqLKVSiARRQP~ 48 (106)
-++|+..|||..+ .|-.|+|..|+..|.
T Consensus 192 Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 192 AEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp HHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred HHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 3678999999999 899999999998886
No 166
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=65.96 E-value=3.9 Score=27.24 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARR 45 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARR 45 (106)
-++|++.|||....|=.|+|+++.-
T Consensus 84 A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 84 THKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHCCCEECCcEEEEEEcCh
Confidence 4679999999999999999999854
No 167
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=62.06 E-value=4.6 Score=25.75 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCceeeeeE-----EEeeeecc
Q psy15193 20 KYQKLKRKVNGTHVQGVK-----LKVSLARR 45 (106)
Q Consensus 20 ~~qklk~emnGt~V~gIq-----LKVSiARR 45 (106)
.-++|+++|||+.+.|-. ++|..++.
T Consensus 63 ~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 63 DMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp HHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred HHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 456889999999999977 55555554
No 168
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.05 E-value=4.3 Score=25.67 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=23.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
.++|++. ||..+.|-.|+|..|.+.++-.
T Consensus 70 a~~Al~~-~~~~~~gr~i~v~~a~~~~~~~ 98 (114)
T 2cpy_A 70 ARKSERL-HRKKLNGREAFVHVVTLEDMRE 98 (114)
T ss_dssp HHHHGGG-CSEEETTEEEEEEEECHHHHHH
T ss_pred HHHHHHh-CCCccCCeEEEEEECCHHHHHH
Confidence 3456666 9999999999999999887644
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=61.49 E-value=5.5 Score=28.18 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=24.3
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|+.|+..+.
T Consensus 150 a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 150 AARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 4578889999999999999999987654
No 170
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=61.41 E-value=2.2 Score=24.52 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHHHHhcCceeeeeEEEeeee
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLA 43 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiA 43 (106)
+++.+ |||..+.|-.|+|..|
T Consensus 55 ~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 55 EKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHH-CCCCEECCEEEEEEeC
Confidence 45555 9999999999999876
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=60.85 E-value=3.7 Score=26.24 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCceeee---eEEEeeee
Q psy15193 20 KYQKLKRKVNGTHVQG---VKLKVSLA 43 (106)
Q Consensus 20 ~~qklk~emnGt~V~g---IqLKVSiA 43 (106)
.-++|+++|||..+.+ -.|+|++|
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 3467899999998874 78999987
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=60.19 E-value=5.6 Score=28.26 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=22.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+++|||..+.|-.|+|..|..+..
T Consensus 172 a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 4678889999999999999999985544
No 173
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.60 E-value=3.5 Score=23.59 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=18.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeee
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLA 43 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiA 43 (106)
-++|++.+| ..+.|-.|+|+.|
T Consensus 55 a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 55 VDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHhCC-CccCCEEEEEEec
Confidence 467888888 8999999999887
No 174
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=58.37 E-value=2.3 Score=26.68 Aligned_cols=29 Identities=14% Similarity=-0.111 Sum_probs=23.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
.++|++ |||..+.|-.|+|..|.+..+-.
T Consensus 68 a~~Al~-~~~~~~~gr~i~V~~a~~~~~~~ 96 (107)
T 2lmi_A 68 VQKALE-KHRMYMGQRYVEVYEINNEDVDA 96 (107)
T ss_dssp HHHHHT-TTTCCSSSSCCCCEECCHHHHHH
T ss_pred HHHHHH-hCcceeCCeEEEEEECCHHHHHH
Confidence 456777 89999999999999998776543
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=57.65 E-value=4.9 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.|||..+.|-.|+|..+...+.
T Consensus 83 A~~A~~~l~~~~~~g~~l~v~~~~~~~~ 110 (216)
T 2qfj_A 83 AQLALEQMNSVMLGGRNIKVGRPSNIGQ 110 (216)
T ss_dssp HHHHHHHHSSCCCC-CCCEEECCSCCGG
T ss_pred HHHHHHHccCCeeCCeeEEEecCCCccc
Confidence 4678889999999999999988877654
No 176
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=57.13 E-value=7.2 Score=22.92 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=16.7
Q ss_pred HHHHHHhcCceeeeeEEEeeee
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLA 43 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiA 43 (106)
++|+ +++|..+.|-.|+|..|
T Consensus 67 ~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 67 EKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHH-HSSCEEETTEEEEEEEC
T ss_pred HHHH-HhCCCEECCEEEEEEeC
Confidence 4566 45888999999999876
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=56.78 E-value=5.4 Score=25.46 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=19.6
Q ss_pred HHHHHHhcCceeeeeEEEeeeeccc
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLARRQ 46 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiARRQ 46 (106)
++|++ +||..+.|-.|+|+.|+..
T Consensus 143 ~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 143 DRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHh-CCCEEeCCeEEEEeecCCC
Confidence 45554 8999999999999999753
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=55.36 E-value=7.4 Score=22.66 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.0
Q ss_pred HHHHHHHhcCceeeeeEEEee
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVS 41 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVS 41 (106)
-++|+ +|||..+.|-.|+|+
T Consensus 66 a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 66 TTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp HHHHG-GGTTCEETTEECEEE
T ss_pred HHHHH-hcCCCEECCeEEEEe
Confidence 35677 999999999999986
No 179
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.86 E-value=4.4 Score=27.15 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=22.4
Q ss_pred HHHHHHHhcC--ceeeeeEEEeeeecccccc
Q psy15193 21 YQKLKRKVNG--THVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 21 ~qklk~emnG--t~V~gIqLKVSiARRQP~l 49 (106)
-++|++.||| ..+.|-.|+|++|++...+
T Consensus 75 A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 75 AMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp HHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred HHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 3678888865 5699999999999875543
No 180
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=52.27 E-value=8.6 Score=27.44 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|+++|||..+.|-.|+|..|....
T Consensus 71 A~~A~~~l~g~~i~g~~l~v~~a~~~~ 97 (261)
T 3sde_A 71 AEIAKAELDGTILKSRPLRIRFATHGA 97 (261)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCSS
T ss_pred HHHHHHHcCCcEECCceeEeeecccCC
Confidence 467888999999999999999997543
No 181
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=51.93 E-value=11 Score=23.60 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=21.0
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|++.+ |..+.|-.|+|.+|+..+.
T Consensus 80 A~~Ai~~~-~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 80 VDKVLAQS-RHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp HHHHHHSS-CEEETTEEEEEEECCCCCC
T ss_pred HHHHHHHC-CCcCCCEEEEEEEccCCCC
Confidence 35677766 5999999999999986553
No 182
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=51.21 E-value=7.1 Score=25.00 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=20.6
Q ss_pred HHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
++|+ +|||..+.|-.|+|..++...
T Consensus 65 ~~A~-~~~~~~~~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 65 TQAM-AFDGIIFQGQSLKIRRPHDYQ 89 (172)
T ss_dssp HHHG-GGTTCEETTEECEEECCSSCC
T ss_pred HHHH-HhCCcEecCceeeecCCcccC
Confidence 4566 899999999999999887543
No 183
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=48.94 E-value=6.6 Score=26.65 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=22.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
.++|++ |||+.+.|-.|+|..|.+..+
T Consensus 101 a~~Al~-~~g~~l~gr~i~V~~a~~~e~ 127 (136)
T 2hgl_A 101 VKMALK-KDRESMGHRYIEVFKSHRTEM 127 (136)
T ss_dssp HHHHHT-TTEEESSSSEEEEEECCHHHH
T ss_pred HHHHHh-cCCCEECCEEEEEEECChHHH
Confidence 457777 999999999999999977654
No 184
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=47.79 E-value=12 Score=25.68 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=25.6
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
.++|+++|||..+.|-.|+|..|...+...
T Consensus 70 A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~ 99 (213)
T 4f02_A 70 AERALDTMNFDVIKGKPVRIMWSQRDPSLR 99 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCCTHHH
T ss_pred HHHHHHHhhhhhcCCccccccccccccccc
Confidence 467899999999999999999998776543
No 185
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=47.58 E-value=8.4 Score=26.53 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=22.8
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHHhcCceee
Q psy15193 6 FP-SNHTEEEITLQAKYQKLKRKVNGTHVQ 34 (106)
Q Consensus 6 ~~-~~~~~~~~~~~~~~qklk~emnGt~V~ 34 (106)
+| |..+.++..|++.+.++++||+.+--+
T Consensus 16 ~~~s~~a~~~~~lk~E~~~lk~E~~stSaQ 45 (93)
T 3sjb_C 16 APGNELSKKYLAKVKERHELKEFNNSISAQ 45 (93)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred ccCcHhHHHHHHHHHHHHHHHHHHhccchH
Confidence 45 777889999999999999999987544
No 186
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.63 E-value=14 Score=22.87 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=23.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
-++|+++ ||..+.|-.|+|..|.++.+..
T Consensus 70 a~~A~~~-~~~~~~gr~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 70 AEKALKK-HKERIGHRYIEIFKSSRAEVRT 98 (104)
T ss_dssp HHHHHTT-TTCCSSSSCCEEEEECTTTSCC
T ss_pred HHHHHHh-CcchhCCcEEEEEECCHHHHHH
Confidence 4567777 9999999999999998877643
No 187
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=44.08 E-value=18 Score=24.95 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCceeee
Q psy15193 8 SNHTEEEITLQAKYQKLKRKVNGTHVQG 35 (106)
Q Consensus 8 ~~~~~~~~~~~~~~qklk~emnGt~V~g 35 (106)
|..+.++..|++.+.++++||+.+--+|
T Consensus 26 s~~~~~~~~lk~E~~~lk~E~~stSaQD 53 (94)
T 3vlc_E 26 NELSKKYLAKVKERHELKEFNNSISAQD 53 (94)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred cHhHHHHHHHHHHHHHHHHHHhccchHH
Confidence 7888999999999999999999876543
No 188
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=42.66 E-value=20 Score=28.17 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=26.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHhcCc-eeeeeEEEeee
Q psy15193 2 VYIHFPSNHTEEEITLQAKYQKLKRKVNGT-HVQGVKLKVSL 42 (106)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~qklk~emnGt-~V~gIqLKVSi 42 (106)
.+++||.+.||||+. .+++++|.- .|+||-++.=|
T Consensus 67 ~~~~lp~~~s~~ell------~~I~~lN~d~~v~GIlvqlPl 102 (285)
T 3l07_A 67 QVITLPEHTTESELL------ELIDQLNNDSSVHAILVQLPL 102 (285)
T ss_dssp EEEEECTTCCHHHHH------HHHHHHHTCTTCCEEEECSSC
T ss_pred EEEECCCCCCHHHHH------HHHHHHhCCCCCcEEEEcCCC
Confidence 578999999998753 456777754 89999877543
No 189
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=42.54 E-value=14 Score=26.70 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.4
Q ss_pred HHHHH--HhcCceeeeeEEEeeeec
Q psy15193 22 QKLKR--KVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 22 qklk~--emnGt~V~gIqLKVSiAR 44 (106)
.+|++ +|||..|+|..|+|.|=|
T Consensus 70 ~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 70 FSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHhhhcCCeecCcEEEEEECc
Confidence 45666 899999999999999755
No 190
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=41.88 E-value=21 Score=28.13 Aligned_cols=35 Identities=14% Similarity=0.451 Sum_probs=26.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHhcCc-eeeeeEEEeee
Q psy15193 2 VYIHFPSNHTEEEITLQAKYQKLKRKVNGT-HVQGVKLKVSL 42 (106)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~qklk~emnGt-~V~gIqLKVSi 42 (106)
.+++||.+.||||+. .+++++|.- .|+||-++.=|
T Consensus 68 ~~~~lp~~~s~~ell------~~I~~lN~d~~v~GIlVqlPL 103 (286)
T 4a5o_A 68 QAYDLPAETSQDDLL------ALIDRLNDDPAIDGILVQLPL 103 (286)
T ss_dssp EEEEECTTCCHHHHH------HHHHHHHTCTTCCEEEECSSC
T ss_pred EEEECCCCCCHHHHH------HHHHHHhCCCCCCEEEEcCCC
Confidence 478999999998764 467777765 89999877533
No 191
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=41.85 E-value=21 Score=28.27 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=26.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHhcCc-eeeeeEEEeee
Q psy15193 2 VYIHFPSNHTEEEITLQAKYQKLKRKVNGT-HVQGVKLKVSL 42 (106)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~qklk~emnGt-~V~gIqLKVSi 42 (106)
.+++||.+.||||+. .+++++|.- .|+||-++.=|
T Consensus 70 ~~~~lp~~~s~~ell------~~I~~lN~d~~v~GIlVqlPL 105 (300)
T 4a26_A 70 FNVELPEDISQEVLE------VNVEKLNNDPNCHGIIVQLPL 105 (300)
T ss_dssp EEEEECTTCCHHHHH------HHHHHHHTCTTCCEEEECSCC
T ss_pred EEEECCCCCCHHHHH------HHHHHhcCCCCCCEEEEcCCC
Confidence 478999999998754 467777754 89999877544
No 192
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=40.60 E-value=13 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.9
Q ss_pred HHHHHHHhcCceeeeeEEEeeee
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLA 43 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiA 43 (106)
-++|++.|||....|-+|+|+++
T Consensus 188 a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 188 THKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHhcCceECCeEEEEEEc
Confidence 46899999999999999999986
No 193
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=40.40 E-value=19 Score=23.45 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=18.7
Q ss_pred HHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
++|++. +|..+.|-.|+|+.|.......
T Consensus 160 ~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 160 DKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HHHHHC-SCCEETTEECEEEECC------
T ss_pred HHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 456655 8999999999999998777654
No 194
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.50 E-value=14 Score=23.12 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=21.2
Q ss_pred HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP 47 (106)
-++|+ ++||..+.|-.|+|.+|...+
T Consensus 68 a~~Al-~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 68 AVAAM-AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp HHHHH-TTSSCCSSSSCCEEEEECCCC
T ss_pred HHHHH-HhCCCeECCcEEEEEECCCCC
Confidence 45667 579999999999999988655
No 195
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=38.45 E-value=8.4 Score=21.88 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=15.3
Q ss_pred HHHHHHhcCceeeeeEEEeeee
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLA 43 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiA 43 (106)
++|++ ++|..+.|-.|+|+.|
T Consensus 55 ~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 55 KKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHT-TSSCCBTTBCCCEEEC
T ss_pred HHHHH-hCCCeECCEEEEEEEC
Confidence 45555 3788888888888776
No 196
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.42 E-value=34 Score=20.56 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=19.9
Q ss_pred HHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLARRQLKV 49 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiARRQP~l 49 (106)
++|++ ++..+.|-.|+|.+|+..+..
T Consensus 71 ~~A~~--~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 71 VKVMS--QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp HHHHH--SCEEETTEEEEEECCCTTCCC
T ss_pred HHHHH--cCCeeCCeEEEEEecCCCCcC
Confidence 44555 477899999999999877653
No 197
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=36.78 E-value=37 Score=22.40 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=15.6
Q ss_pred EeCCCCCCHHHHHHHHHHHHH
Q psy15193 4 IHFPSNHTEEEITLQAKYQKL 24 (106)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~qkl 24 (106)
+.||.+||+++..+-.++.++
T Consensus 76 V~~P~~Ls~~q~~~l~~l~~~ 96 (109)
T 3i38_A 76 IVMPTKPDEKARELWQQLAAA 96 (109)
T ss_dssp ECCCSSCCHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhh
Confidence 569999999987766555543
No 198
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=34.93 E-value=87 Score=22.99 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=40.7
Q ss_pred eCCCCCCHH-HHHHHHHHHHHHHHhcCceeeeeEEEeeeecccccccccccccCC
Q psy15193 5 HFPSNHTEE-EITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASS 58 (106)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~qklk~emnGt~V~gIqLKVSiARRQP~ld~indA~s~ 58 (106)
++|..++++ ...+++--.++.+.++-.-+.+|.+.+. ..+|.+-+||.-.|.
T Consensus 240 ~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~--~g~~~vlEiN~rpg~ 292 (322)
T 2fb9_A 240 LIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGF 292 (322)
T ss_dssp ESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE--TTEEEEEEEESSCCC
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE--CCcEEEEEEECCCCC
Confidence 578888864 3467777788889998888889999887 677998889984443
No 199
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=34.90 E-value=24 Score=27.75 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=25.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHhcC-ceeeeeEEEeee
Q psy15193 2 VYIHFPSNHTEEEITLQAKYQKLKRKVNG-THVQGVKLKVSL 42 (106)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~qklk~emnG-t~V~gIqLKVSi 42 (106)
.+++||.+.||||+. .+++++|. ..|+||-++.=|
T Consensus 66 ~~~~lp~~~s~~ell------~~I~~lN~d~~v~GIlvqlPl 101 (285)
T 3p2o_A 66 LVYHLNENITQNELL------ALINTLNHDDSVHGILVQLPL 101 (285)
T ss_dssp EEEEECTTCCHHHHH------HHHHHHHHCTTCCEEEECSCC
T ss_pred EEEECCCCCCHHHHH------HHHHHHhCCCCCCEEEecCCC
Confidence 578999999998753 45666664 479998877544
No 200
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.00 E-value=8.3 Score=24.50 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=18.7
Q ss_pred HHHHHHHhcCceeeeeEEEeeeec
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLAR 44 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiAR 44 (106)
-++|+. +||..+.|-.|+|..|+
T Consensus 65 a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 65 AKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp HHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred HHHHHH-cCCCEECCEEEEEEEch
Confidence 356777 89999999999998765
No 201
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=31.98 E-value=22 Score=21.43 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=17.0
Q ss_pred HHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
++|++ ||..++|-.|+|..|.+...+.
T Consensus 64 ~~Ai~--~~~~~~g~~l~v~~a~~~~~~~ 90 (102)
T 2xs2_A 64 QKIVE--SQINFHGKKLKLGPAIRKQNLS 90 (102)
T ss_dssp HHHTT--CCCEETTEECEEEEEEECC---
T ss_pred HHHHh--CCCeECCEEEEEEECCcCcchh
Confidence 34454 7778888888888877655544
No 202
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=31.20 E-value=32 Score=20.80 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=15.0
Q ss_pred HhcCceee--eeEEEeeeecccc
Q psy15193 27 KVNGTHVQ--GVKLKVSLARRQL 47 (106)
Q Consensus 27 emnGt~V~--gIqLKVSiARRQP 47 (106)
+|+|..+. |..|+|+.|+..+
T Consensus 63 ~~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 63 SLCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp HHTTCEEEETTEEEEEEECC---
T ss_pred HHcCCCcccCCEEEEEEEcCCCC
Confidence 58888766 8999999988554
No 203
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=30.23 E-value=23 Score=21.20 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=17.0
Q ss_pred HHHHHHhcCceeeeeEEEeeeecc
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLARR 45 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiARR 45 (106)
+++.+.|++..+.|-+++|+.||+
T Consensus 53 ~~~~~~l~~~~i~g~~~~v~~~~~ 76 (76)
T 2g0c_A 53 PHVLKVMKNTTVKGKQLKVNKANK 76 (76)
T ss_dssp HHHHHHHTTCCC---CCCEEECC-
T ss_pred HHHHHHhccccCcCceEEEEECCC
Confidence 467788999999999999998873
No 204
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.00 E-value=29 Score=20.34 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=16.7
Q ss_pred HhcCcee--eeeEEEeeeeccccc
Q psy15193 27 KVNGTHV--QGVKLKVSLARRQLK 48 (106)
Q Consensus 27 emnGt~V--~gIqLKVSiARRQP~ 48 (106)
+++|..+ .|..|+|+.|+.++.
T Consensus 57 ~~~~~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 57 SLCGEDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp HTTTCEEEETTEEEEEECCCCCCC
T ss_pred HHhcCCceeCCEEEEEEecCCCCC
Confidence 4677655 789999999887655
No 205
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=28.11 E-value=54 Score=22.21 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceeeee
Q psy15193 10 HTEEEITLQAKYQKLKRKVNGTHVQGV 36 (106)
Q Consensus 10 ~~~~~~~~~~~~qklk~emnGt~V~gI 36 (106)
+-..-+.+|++++++..+|....|.|-
T Consensus 13 mmkqaq~mQ~~m~~~QeeL~~~~v~g~ 39 (112)
T 1j8b_A 13 LMKQAQQMQEKMQKMQEEIAQLEVTGE 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccEEEEE
Confidence 334456689999999999999999875
No 206
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=27.91 E-value=50 Score=22.12 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCceeeeeE----EEeeee
Q psy15193 15 ITLQAKYQKLKRKVNGTHVQGVK----LKVSLA 43 (106)
Q Consensus 15 ~~~~~~~qklk~emnGt~V~gIq----LKVSiA 43 (106)
+.+|++.+++.+++....|.|-- ++|.+-
T Consensus 13 q~mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~ 45 (99)
T 3f42_A 13 DGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFN 45 (99)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEGGGTEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEe
Confidence 55899999999999999997753 455443
No 207
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=27.78 E-value=15 Score=24.95 Aligned_cols=27 Identities=7% Similarity=-0.059 Sum_probs=22.8
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
-++|+ ++||..+.|-.|+|.+|...+.
T Consensus 99 A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 99 AVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp HHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred HHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 45667 7899999999999999988765
No 208
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=26.36 E-value=36 Score=21.95 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceee
Q psy15193 10 HTEEEITLQAKYQKLKRKVNGTHVQ 34 (106)
Q Consensus 10 ~~~~~~~~~~~~qklk~emnGt~V~ 34 (106)
.+++...|++.++++++||+.+.-+
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQ 28 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQ 28 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHHHHHHHHHHHHHhccchH
Confidence 3567788999999999999887543
No 209
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.23 E-value=18 Score=24.09 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=23.1
Q ss_pred HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193 21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA 50 (106)
Q Consensus 21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld 50 (106)
.++|+++ ||..+.|-.|+|..|.+..+..
T Consensus 81 A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~ 109 (123)
T 2dha_A 81 AQNALRK-HKDLLGKRYIELFRSTAAEVQQ 109 (123)
T ss_dssp HHHHHTT-TTEESSSCEECCEEECHHHHHH
T ss_pred HHHHHHh-CCCeeCCeEEEEEECCHHHHHH
Confidence 4566666 9999999999999998776544
No 210
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=24.84 E-value=1.2e+02 Score=23.15 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=39.8
Q ss_pred eCCCCCCHHH-HHHHHHHHHHHHHhcCceeeeeEEEeeeecccccccccccccCC
Q psy15193 5 HFPSNHTEEE-ITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASS 58 (106)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~qklk~emnGt~V~gIqLKVSiARRQP~ld~indA~s~ 58 (106)
.+|..++++. ..+++--.++.+.|+-.-+.+|.+.+. ..+|.+-+||.--|.
T Consensus 275 ~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~g~~~vlEiN~rpg~ 327 (367)
T 2pvp_A 275 APKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--ENEVYLNEINPIPGS 327 (367)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--TTEEEEEEEESSCGG
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--CCeEEEEEEeCCCCC
Confidence 4688888653 556777778888888767888888887 677988889986554
No 211
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.65 E-value=23 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=18.3
Q ss_pred HHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193 22 QKLKRKVNGTHVQGVKLKVSLARRQLK 48 (106)
Q Consensus 22 qklk~emnGt~V~gIqLKVSiARRQP~ 48 (106)
++|++.++| ..|-.|+|++|+.+|.
T Consensus 68 ~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 68 ELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp HHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred HHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 455566555 4677899999998886
No 212
>3b2e_E Golgi to ER traffic protein 1; protein-protein interaction, receptor complex, hydrolase, TR protein, ADP binding, coild-coil; HET: ADP; 3.00A {Saccharomyces cerevisiae} PDB: 3zs8_C
Probab=30.03 E-value=16 Score=24.51 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCceeee
Q psy15193 7 PSNHTEEEITLQAKYQKLKRKVNGTHVQG 35 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~qklk~emnGt~V~g 35 (106)
-|.+.+++..|+..++.+++||+++--+|
T Consensus 15 ~s~~~~~~~~Lk~Ei~~lk~E~~stSaQD 43 (84)
T 3b2e_E 15 GNELSKKYLAKVKERHELKEFNNSISAQD 43 (84)
Confidence 36677888899999999999999887655
No 213
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.89 E-value=8 Score=24.16 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=23.2
Q ss_pred eCCCCCCHHHHH-----HHHHHHHHHHHhcCceeeeeEEEeeeeccccccccccc
Q psy15193 5 HFPSNHTEEEIT-----LQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPIND 54 (106)
Q Consensus 5 ~~~~~~~~~~~~-----~~~~~qklk~emnGt~V~gIqLKVSiARRQP~ld~ind 54 (106)
-|=.+|+.||+. |++...+=+.++.+. --|.|||.++.|+.
T Consensus 5 ~fLk~ls~eEL~~rl~~Ld~~Me~Ei~elr~R---------Y~~KRqPIldAi~a 50 (51)
T 2jo8_A 5 EFLKSWTVEDLQKRLLALDPMMEQEIEEIRQK---------YQSKRQPILDAIEA 50 (51)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHccHHHHHHHHHHHHH---------HHHhHhhHHHHHhc
Confidence 355678888753 233333333333322 23789999998773
No 214
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=23.74 E-value=22 Score=22.92 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=19.7
Q ss_pred cccCCccccceeeccCCC--CCCCCCcceeeecccc
Q psy15193 54 DAASSTTWSAIACHQSLK--GNHKDKRHQVIYDDDI 87 (106)
Q Consensus 54 dA~s~s~WsslA~~~SqK--GshkDkR~lV~YddDl 87 (106)
+..+..+|++-....+.. -.-.|...+|+|+.++
T Consensus 67 d~~~~~vWss~t~~~~~~~~l~L~ddGNlVly~~~~ 102 (105)
T 4h3o_A 67 DSSGRSLWASHSTRGSGNYILILQDDGNVIIYGSDI 102 (105)
T ss_dssp CTTCCEEEECCCCCCSSCEEEEECTTSCEEEEESEE
T ss_pred CCCcEEEEEecCCCCCCCEEEEEeCCCeEEEECCcE
Confidence 556778887754322111 1235888888887543
No 215
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=22.54 E-value=53 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=21.3
Q ss_pred HHHHHHHhcCcee-----eeeEEEeeeecccc
Q psy15193 21 YQKLKRKVNGTHV-----QGVKLKVSLARRQL 47 (106)
Q Consensus 21 ~qklk~emnGt~V-----~gIqLKVSiARRQP 47 (106)
-++|++.|||+.+ .++.|.|+++-+-|
T Consensus 69 A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~ 100 (345)
T 3tht_A 69 SKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 100 (345)
T ss_dssp HHHHHHHTTTCEEECTTSCEEECEEEECSSEE
T ss_pred HHHHHHHhCCCccccccCCceEEEEEEeeccc
Confidence 4689999999999 45678899885444
No 216
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=22.49 E-value=2.5e+02 Score=21.11 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=38.6
Q ss_pred eCCCCCCHHH-HHHHHHHHHHHHHhcCceeeeeEEEeeeecccccccccccccCC
Q psy15193 5 HFPSNHTEEE-ITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASS 58 (106)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~qklk~emnGt~V~gIqLKVSiARRQP~ld~indA~s~ 58 (106)
++|..++++. ..+++--.++-+.|+-.-+.+|.+.+. ...+|.+-+||.-.|.
T Consensus 270 ~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~-~~g~~~vlEiN~rpg~ 323 (377)
T 1ehi_A 270 QIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLD-ENNVPYLGEPNTLPGF 323 (377)
T ss_dssp ESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-TTCCEEEEEEESSCCC
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEe-CCCCEEEEEEeCCCCC
Confidence 5688898764 556677778888888877877777764 2356888889986553
No 217
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=21.21 E-value=99 Score=21.87 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=23.8
Q ss_pred EeCCCCCCHHHHH---HHHHHHHHHHHhcCcee
Q psy15193 4 IHFPSNHTEEEIT---LQAKYQKLKRKVNGTHV 33 (106)
Q Consensus 4 ~~~~~~~~~~~~~---~~~~~qklk~emnGt~V 33 (106)
..+|.+||.|++. +|..++.+-.+|....+
T Consensus 30 t~ip~~Lt~eq~~ay~~~~RieeIt~kL~~g~l 62 (124)
T 4fxw_B 30 TVIPPGLTREQERAYIVQLQIEDLTRKLRTGDL 62 (124)
T ss_dssp SBCCSSCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred eecCCCCCHHHHHHHHHHhhHHHHHHHHhcCCc
Confidence 5789999999865 88888888888875543
No 218
>4e05_I Salivary anti-thrombin peptide anophelin; hydrolase-hydrolase inhibitor complex; HET: NAG; 2.30A {Anopheles albimanus} PDB: 4e06_I*
Probab=20.21 E-value=23 Score=22.93 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=0.0
Q ss_pred eeecccccCCCCCCCCCcccc
Q psy15193 81 VIYDDDIFGEEPPLEDPDSIA 101 (106)
Q Consensus 81 V~YddDlF~e~~~~~~~~~~~ 101 (106)
-+||+|.|.++|-.+.-.||.
T Consensus 10 P~YDEdd~d~e~l~phsss~~ 30 (61)
T 4e05_I 10 PSYDEDTDDSDKLVENDTSIT 30 (61)
T ss_dssp ---------------------
T ss_pred CccccccCcccccccCCCCCc
Confidence 479999998888766555553
Done!