Your job contains 1 sequence.
>psy15193
MVYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTT
WSAIACHQSLKGNHKDKRHQVIYDDDIFGEEPPLEDPDSIAMETDK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15193
(106 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0017430 - symbol:Nelf-E "Negative elongation facto... 175 1.6e-23 2
UNIPROTKB|Q95ZE9 - symbol:Nelf-E "Negative elongation fac... 167 1.8e-22 2
UNIPROTKB|K7GQ47 - symbol:RDBP "Uncharacterized protein" ... 151 3.7e-10 1
UNIPROTKB|Q0V898 - symbol:RDBP "Negative elongation facto... 151 3.7e-10 1
UNIPROTKB|F1RQW5 - symbol:RDBP "Uncharacterized protein" ... 151 3.8e-10 1
UNIPROTKB|B4DUN1 - symbol:NELFE "cDNA FLJ52247, highly si... 148 6.8e-10 1
UNIPROTKB|P18615 - symbol:NELFE "Negative elongation fact... 148 8.2e-10 1
UNIPROTKB|B4DYX9 - symbol:NELFE "cDNA FLJ56180, highly si... 148 8.5e-10 1
UNIPROTKB|F1LP40 - symbol:Rdbp "Protein Rdbp" species:101... 141 3.8e-09 1
RGD|1303325 - symbol:Nelfe "negative elongation factor co... 141 4.5e-09 1
MGI|MGI:102744 - symbol:Nelfe "negative elongation factor... 141 4.6e-09 1
ZFIN|ZDB-GENE-040718-69 - symbol:nelfe "negative elongati... 131 5.8e-08 1
>FB|FBgn0017430 [details] [associations]
symbol:Nelf-E "Negative elongation factor E" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding"
evidence=ISS;IDA] [GO:0007070 "negative regulation of transcription
from RNA polymerase II promoter during mitosis" evidence=IDA]
[GO:0017053 "transcriptional repressor complex" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032021 "NELF
complex" evidence=IPI] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0017053
GO:GO:0005694 EMBL:AE014296 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0034244
GO:GO:0007070 GO:GO:0032021 eggNOG:NOG86140
GeneTree:ENSGT00630000089917 KO:K15182 EMBL:Y10015 EMBL:Y10016
EMBL:AY071061 RefSeq:NP_648241.1 UniGene:Dm.20046
ProteinModelPortal:P92204 SMR:P92204 IntAct:P92204 MINT:MINT-779659
STRING:P92204 PaxDb:P92204 PRIDE:P92204 EnsemblMetazoa:FBtr0076650
GeneID:38982 KEGG:dme:Dmel_CG5994 CTD:38982 FlyBase:FBgn0017430
InParanoid:P92204 OMA:ARRQPQI OrthoDB:EOG4KD535 PhylomeDB:P92204
GenomeRNAi:38982 NextBio:811294 Bgee:P92204 GermOnline:CG5994
Uniprot:P92204
Length = 280
Score = 175 (66.7 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G +V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277
Score = 112 (44.5 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 22/27 (81%), Positives = 24/27 (88%)
Query: 1 MVYIHFPSNHTEEEITLQAKYQKLKRK 27
MVYIHFP+N TEEE LQAKYQKLK+K
Sbjct: 1 MVYIHFPNNLTEEEQMLQAKYQKLKKK 27
>UNIPROTKB|Q95ZE9 [details] [associations]
symbol:Nelf-E "Negative elongation factor E" species:7244
"Drosophila virilis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0007070 "negative regulation of transcription from RNA
polymerase II promoter during mitosis" evidence=ISS] [GO:0017053
"transcriptional repressor complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0017053 GO:GO:0005694 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0007070
eggNOG:NOG86140 OrthoDB:EOG4KD535 EMBL:AJ306692
ProteinModelPortal:Q95ZE9 STRING:Q95ZE9 FlyBase:FBgn0044888
InParanoid:Q95ZE9 Uniprot:Q95ZE9
Length = 281
Score = 167 (63.8 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
+++G V G+ L+V LARRQ ++ PINDA+SS WS+IA +S KG+HKD R V Y+DD
Sbjct: 219 EMHGKSVTGIVLQVQLARRQPQIVPINDASSSAVWSSIAASKSQKGSHKDLRQMVQYNDD 278
Score = 112 (44.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 22/27 (81%), Positives = 24/27 (88%)
Query: 1 MVYIHFPSNHTEEEITLQAKYQKLKRK 27
MVYIHFP+N TEEE LQAKYQKLK+K
Sbjct: 1 MVYIHFPNNLTEEEHMLQAKYQKLKKK 27
>UNIPROTKB|K7GQ47 [details] [associations]
symbol:RDBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00630000089917 EMBL:CT956038
Ensembl:ENSSSCT00000032936 Uniprot:K7GQ47
Length = 373
Score = 151 (58.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 30/65 (46%), Positives = 46/65 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 307 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 362
Query: 86 DIFGE 90
D++ E
Sbjct: 363 DVYKE 367
>UNIPROTKB|Q0V898 [details] [associations]
symbol:RDBP "Negative elongation factor E" species:9913
"Bos taurus" [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0032021 "NELF complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0034244 GO:GO:0032021
EMBL:BT026321 EMBL:BC120072 IPI:IPI00699932 RefSeq:NP_001069672.1
UniGene:Bt.36000 ProteinModelPortal:Q0V898 SMR:Q0V898 STRING:Q0V898
PRIDE:Q0V898 Ensembl:ENSBTAT00000009802 GeneID:540158
KEGG:bta:540158 CTD:7936 eggNOG:NOG86140
GeneTree:ENSGT00630000089917 HOGENOM:HOG000232089
HOVERGEN:HBG052598 InParanoid:Q0V898 KO:K15182 OMA:GYEERSG
OrthoDB:EOG4PNXJ1 NextBio:20878458 Uniprot:Q0V898
Length = 374
Score = 151 (58.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 30/65 (46%), Positives = 46/65 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 308 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 363
Query: 86 DIFGE 90
D++ E
Sbjct: 364 DVYKE 368
>UNIPROTKB|F1RQW5 [details] [associations]
symbol:RDBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0032021 "NELF complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0034244 GO:GO:0032021
GeneTree:ENSGT00630000089917 OMA:GYEERSG EMBL:CT956038
Ensembl:ENSSSCT00000001565 ArrayExpress:F1RQW5 Uniprot:F1RQW5
Length = 378
Score = 151 (58.2 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 30/65 (46%), Positives = 46/65 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKVS+AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 312 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 367
Query: 86 DIFGE 90
D++ E
Sbjct: 368 DVYKE 372
>UNIPROTKB|B4DUN1 [details] [associations]
symbol:NELFE "cDNA FLJ52247, highly similar to Negative
elongation factor E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003746 "translation
elongation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003746
EMBL:AL645922 HOGENOM:HOG000232089 HOVERGEN:HBG052598
UniGene:Hs.423935 HGNC:HGNC:13974 EMBL:AK300717 IPI:IPI00921016
SMR:B4DUN1 STRING:B4DUN1 Ensembl:ENST00000444811 UCSC:uc011dot.2
Uniprot:B4DUN1
Length = 350
Score = 148 (57.2 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 29/65 (44%), Positives = 46/65 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 284 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 339
Query: 86 DIFGE 90
D++ E
Sbjct: 340 DVYKE 344
>UNIPROTKB|P18615 [details] [associations]
symbol:NELFE "Negative elongation factor E" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0034244 "negative regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008150
"biological_process" evidence=ND] [GO:0032021 "NELF complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
Reactome:REACT_116125 GO:GO:0016032 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006368 EMBL:AL049547
GO:GO:0034244 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
EMBL:AF019413 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR388219 EMBL:AL645922 EMBL:CR753845
GO:GO:0032021 CTD:7936 eggNOG:NOG86140 HOGENOM:HOG000232089
HOVERGEN:HBG052598 KO:K15182 OrthoDB:EOG4PNXJ1 EMBL:M33231
EMBL:M32274 EMBL:M32275 EMBL:M32276 EMBL:M33230 EMBL:L03411
EMBL:BC025235 EMBL:BC050617 EMBL:X16105 IPI:IPI00941607 PIR:S36789
RefSeq:NP_002895.3 UniGene:Hs.423935 PDB:1X5P PDB:2BZ2 PDB:2JX2
PDBsum:1X5P PDBsum:2BZ2 PDBsum:2JX2 ProteinModelPortal:P18615
SMR:P18615 DIP:DIP-32669N IntAct:P18615 MINT:MINT-1033320
STRING:P18615 PhosphoSite:P18615 DMDM:1350554 PaxDb:P18615
PRIDE:P18615 DNASU:7936 Ensembl:ENST00000375429
Ensembl:ENST00000383174 Ensembl:ENST00000383343
Ensembl:ENST00000429857 Ensembl:ENST00000448628
Ensembl:ENST00000457397 GeneID:7936 KEGG:hsa:7936 UCSC:uc003nyk.3
GeneCards:GC06M031922 HGNC:HGNC:13974 HPA:HPA007187 MIM:154040
neXtProt:NX_P18615 PharmGKB:PA134974984 InParanoid:P18615
PhylomeDB:P18615 EvolutionaryTrace:P18615 GenomeRNAi:7936
NextBio:30439 ArrayExpress:P18615 Bgee:P18615 CleanEx:HS_RDBP
Genevestigator:P18615 GermOnline:ENSG00000204356 Uniprot:P18615
Length = 380
Score = 148 (57.2 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 29/65 (44%), Positives = 46/65 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 314 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369
Query: 86 DIFGE 90
D++ E
Sbjct: 370 DVYKE 374
>UNIPROTKB|B4DYX9 [details] [associations]
symbol:NELFE "cDNA FLJ56180, highly similar to Negative
elongation factor E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003746 "translation
elongation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003746
EMBL:AL844853 EMBL:AL662849 EMBL:BX005143 EMBL:CR759782
EMBL:CR388219 EMBL:AL645922 EMBL:CR753845 HOGENOM:HOG000232089
HOVERGEN:HBG052598 OMA:GYEERSG UniGene:Hs.423935 HGNC:HGNC:13974
EMBL:AK302652 IPI:IPI00000858 SMR:B4DYX9 STRING:B4DYX9
Ensembl:ENST00000375425 Ensembl:ENST00000548056
Ensembl:ENST00000548988 Ensembl:ENST00000549252
Ensembl:ENST00000551833 Ensembl:ENST00000552869 Uniprot:B4DYX9
Length = 387
Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 29/65 (44%), Positives = 46/65 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 321 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 376
Query: 86 DIFGE 90
D++ E
Sbjct: 377 DVYKE 381
>UNIPROTKB|F1LP40 [details] [associations]
symbol:Rdbp "Protein Rdbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IEA] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1303325 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034244 GO:GO:0032021
GeneTree:ENSGT00630000089917 OMA:GYEERSG IPI:IPI00422013
Ensembl:ENSRNOT00000000478 ArrayExpress:F1LP40 Uniprot:F1LP40
Length = 344
Score = 141 (54.7 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 287 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 342
Query: 86 DI 87
D+
Sbjct: 343 DL 344
>RGD|1303325 [details] [associations]
symbol:Nelfe "negative elongation factor complex member E"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0032021
"NELF complex" evidence=ISO] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1303325 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BX883045 GO:GO:0034244
EMBL:CH474121 GO:GO:0032021 CTD:7936 HOGENOM:HOG000232089
HOVERGEN:HBG052598 KO:K15182 OrthoDB:EOG4PNXJ1 IPI:IPI00422013
EMBL:BC079427 RefSeq:NP_001159373.1 RefSeq:NP_997713.1
UniGene:Rn.16164 SMR:Q6MG75 STRING:Q6MG75 GeneID:294258
KEGG:rno:294258 UCSC:RGD:1303325 eggNOG:NOG247039 InParanoid:Q6MG75
NextBio:637845 Genevestigator:Q6MG75 Uniprot:Q6MG75
Length = 369
Score = 141 (54.7 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 312 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 367
Query: 86 DI 87
D+
Sbjct: 368 DL 369
>MGI|MGI:102744 [details] [associations]
symbol:Nelfe "negative elongation factor complex member E,
Rdbp" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032021 "NELF complex" evidence=ISO] [GO:0034244
"negative regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:102744 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0034244 EMBL:AF109906
UniGene:Mm.653 GO:GO:0032021 CTD:7936 eggNOG:NOG86140
HOGENOM:HOG000232089 HOVERGEN:HBG052598 KO:K15182 OMA:GYEERSG
OrthoDB:EOG4PNXJ1 EMBL:M21332 EMBL:AK012389 EMBL:BC034867
EMBL:U83841 EMBL:U83842 IPI:IPI00395067 IPI:IPI00395068 PIR:A40112
RefSeq:NP_001039328.1 RefSeq:NP_001039329.1 RefSeq:NP_613046.2
UniGene:Mm.279907 ProteinModelPortal:P19426 SMR:P19426
IntAct:P19426 STRING:P19426 PhosphoSite:P19426 PaxDb:P19426
PRIDE:P19426 Ensembl:ENSMUST00000097343 Ensembl:ENSMUST00000165953
Ensembl:ENSMUST00000173357 GeneID:27632 KEGG:mmu:27632
InParanoid:P19426 NextBio:305826 Bgee:P19426 CleanEx:MM_RDBP
Genevestigator:P19426 GermOnline:ENSMUSG00000024369 Uniprot:P19426
Length = 375
Score = 141 (54.7 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V+ V+LKV++AR+Q P+ DAA+ + W ++A S KG H+DKR Q++Y D
Sbjct: 318 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 373
Query: 86 DI 87
D+
Sbjct: 374 DL 375
>ZFIN|ZDB-GENE-040718-69 [details] [associations]
symbol:nelfe "negative elongation factor complex
member E" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040718-69 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089917
EMBL:FP102194 IPI:IPI00934333 Ensembl:ENSDART00000113250
ArrayExpress:F1QK79 Bgee:F1QK79 Uniprot:F1QK79
Length = 378
Score = 131 (51.2 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 27/61 (44%), Positives = 43/61 (70%)
Query: 27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
++NGT V V +KVS+AR+Q P+ DAA+ + W+++A S KG+++DKR QV+Y +
Sbjct: 320 ELNGTTVGDVNIKVSIARKQ----PMLDAATGKSVWASLAVQNSAKGSYRDKRSQVVYSE 375
Query: 86 D 86
D
Sbjct: 376 D 376
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.129 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 106 106 0.00091 102 3 11 23 0.47 30
29 0.39 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 582 (62 KB)
Total size of DFA: 126 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.11u 0.07s 13.18t Elapsed: 00:00:08
Total cpu time: 13.11u 0.07s 13.18t Elapsed: 00:00:08
Start: Thu Aug 15 14:38:19 2013 End: Thu Aug 15 14:38:27 2013