RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15193
(106 letters)
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 27.7 bits (61), Expect = 0.098
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 2 VYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQ 46
+ + P N + ++NGT V+ V+LKV++AR+Q
Sbjct: 33 LSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 77
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.4 bits (55), Expect = 0.83
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLARRQLKVA 50
QK +++ G V G KL+V ++ R K A
Sbjct: 57 QKALKQLQGHTVDGHKLEVRISERATKPA 85
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 24.9 bits (54), Expect = 1.2
Identities = 3/24 (12%), Positives = 13/24 (54%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLARR 45
++ +N ++G +++ ++R
Sbjct: 56 ERALDTMNFDVIKGKPVRIMWSQR 79
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 24.7 bits (53), Expect = 1.4
Identities = 6/51 (11%), Positives = 13/51 (25%)
Query: 1 MVYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAP 51
Y+ + + Q + + +G L V L +
Sbjct: 33 YCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCS 83
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 24.7 bits (53), Expect = 1.7
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 14 EITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAP 51
++ + Q +NG + G ++++L++ Q P
Sbjct: 46 QMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLP 83
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 24.4 bits (53), Expect = 1.8
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLARRQ 46
+ +G + G L ++LA
Sbjct: 64 RAAVAGEDGRMIAGQVLDINLAAEP 88
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 24.2 bits (52), Expect = 2.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLAR 44
Q+ + +NG V+ +LKVS AR
Sbjct: 58 QRAIKVLNGITVRNKRLKVSYAR 80
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 24.2 bits (52), Expect = 2.5
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 2 VYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQ 46
+ + ++ + VNGT ++G +K +
Sbjct: 48 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 23.9 bits (51), Expect = 3.5
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLAR 44
+ +G G +L+V R
Sbjct: 67 EDAVYGRDGYDYDGYRLRVEFPR 89
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 23.6 bits (50), Expect = 4.0
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLAR 44
+ K+NG ++G L ++
Sbjct: 57 RYCVEKLNGLKIEGYTLVTKVSN 79
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 23.5 bits (50), Expect = 4.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLARRQ 46
Q + +NG + +LKV L R +
Sbjct: 74 QAAIQSMNGFQIGMKRLKVQLKRSK 98
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 23.5 bits (50), Expect = 4.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLAR 44
+K +NG +Q +KVS AR
Sbjct: 58 EKAINTLNGLRLQTKTIKVSYAR 80
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 23.5 bits (50), Expect = 4.7
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLARRQ 46
R + G +++ A+
Sbjct: 60 TNALRSMQGFPFYDKPMRIQYAKTD 84
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 23.6 bits (50), Expect = 4.9
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 21 YQKLKRKVNGTHVQGVKLKVSLARRQ 46
+ RK++ T + + + S R
Sbjct: 63 MEYALRKLDDTKFRSHEGETSYIRVY 88
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 23.2 bits (49), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLARRQ 46
+ +G QG KLKVSLAR++
Sbjct: 72 KAAVEWFDGKDFQGSKLKVSLARKK 96
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 23.1 bits (49), Expect = 6.2
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLARRQ 46
++ K+NG + K+ V + +
Sbjct: 62 ERAIEKMNGMLLNDRKVFVGRFKSR 86
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 23.1 bits (49), Expect = 6.3
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 14 EITLQAKYQKLKRKVNGTHVQGVKLKVSLA 43
+ + +N + K+K+ L
Sbjct: 57 AFESRDEATAAVIDLNDRPIGSRKVKLVLG 86
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 23.0 bits (49), Expect = 6.3
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 24 LKRKVNGTHVQGVKLKVSLARRQLKV 49
+ TH+ G +L + A ++ V
Sbjct: 68 FNALCHSTHLYGRRLVLEWADSEVTV 93
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 23.2 bits (49), Expect = 6.7
Identities = 5/42 (11%), Positives = 11/42 (26%)
Query: 5 HFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQ 46
+ + VNG + G L + + +
Sbjct: 57 GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 98
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 22.6 bits (48), Expect = 7.1
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLA 43
K ++ NG + G + + L
Sbjct: 55 LKAMKQYNGVPLDGRPMNIQLV 76
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 23.1 bits (49), Expect = 7.1
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLARRQ 46
K +V+G QG L V + +
Sbjct: 64 VKAYAEVDGQVFQGRMLHVLPSTIK 88
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 22.7 bits (48), Expect = 7.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLAR 44
+ V+G + L V A+
Sbjct: 64 ARAIAGVSGFGYDHLILNVEWAK 86
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 22.6 bits (48), Expect = 9.3
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 22 QKLKRKVNGTHVQGVKLKVSLAR 44
+ K +++ ++G +L+V A
Sbjct: 58 EIAKVELDNMPLRGKQLRVRFAC 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.374
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 389,470
Number of extensions: 14957
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 38
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.3 bits)