BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15195
         (232 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZXE|B Chain B, Crystal Structure Of The Sodium - Potassium Pump In The
           E2.2k+.Pi State
          Length = 305

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 16/138 (11%)

Query: 2   GSQKDIDGRLSNFVQDSHTTSITNSSGPTSLSVQDLWLKPQAVTTVSFPDCVKWLTV--- 58
           G  K+ DG    F+ DS        +G +   +   +L         F   ++ L +   
Sbjct: 4   GKSKETDGGWKKFLWDSEKKEFLGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLS 63

Query: 59  EFDPKC-------GTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVL 111
           +F+PK        G   A   ++  I     NP    S++   HKL + Y +  Q     
Sbjct: 64  DFEPKYQDRVAPPGLSHAPYAIKTEISFSISNPKSYESFVKSMHKLMDLYNESSQ----- 118

Query: 112 PGNEVIFTL-ETASDYVK 128
            GN       +T +DY+K
Sbjct: 119 AGNSPFEDCSDTPADYIK 136


>pdb|3A3Y|B Chain B, Crystal Structure Of The Sodium-potassium Pump With Bound
           Potassium And Ouabain
          Length = 305

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 16/138 (11%)

Query: 2   GSQKDIDGRLSNFVQDSHTTSITNSSGPTSLSVQDLWLKPQAVTTVSFPDCVKWLTV--- 58
           G  K+ DG    F+ DS        +G +   +   +L         F   ++ L +   
Sbjct: 4   GKSKETDGGWKKFLWDSEKKEFLGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLS 63

Query: 59  EFDPKC-------GTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVL 111
           +F+PK        G   A   ++  I     NP    S++   HKL + Y +  Q     
Sbjct: 64  DFEPKYQDRVAPPGLSHAPYAIKTEISFSISNPKSYESFVKSMHKLMDLYNESSQ----- 118

Query: 112 PGNEVIFTL-ETASDYVK 128
            GN       +T +DY+K
Sbjct: 119 AGNSPFEDCSDTPADYIK 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,815,494
Number of Sequences: 62578
Number of extensions: 250756
Number of successful extensions: 606
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 9
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)