BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15195
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TPH6|MYCB2_MOUSE Probable E3 ubiquitin-protein ligase MYCBP2 OS=Mus musculus GN=Mycbp2
PE=1 SV=2
Length = 4711
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 126/204 (61%), Gaps = 13/204 (6%)
Query: 40 KPQAVT--TVSFPDCVKWLTVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKL 97
KP V V+FP+CV+W+T+EFDP+CGT Q+ED ++L IP+R S + + H+
Sbjct: 1989 KPACVMHYKVTFPECVRWMTIEFDPQCGTAQSEDVIRLLIPVRTIQNSGYGAKLTSVHEN 2048
Query: 98 SN---------GYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYEWYY 148
N G + WP +VLPGNE +F+LETASDYVKDD+A YGFKC GYE+
Sbjct: 2049 LNSWVELKKYSGSSGWPTMVLVLPGNEALFSLETASDYVKDDKASFYGFKCFAIGYEFSP 2108
Query: 149 NPGEGLHRLESELSFLGAMCAASLLKKDLILPPTGEELDEEWGESLEDLMENVYSKHSQL 208
P EG+ +LE EL+ LG +CAA+L+KKDL LP E ++ L V HS +
Sbjct: 2109 GPDEGVIQLEKELANLGGVCAAALMKKDLALPVGNELEEDLEILEEAAL--QVCKTHSGI 2166
Query: 209 LSKGFALSSIPTIHQALDGVLPYR 232
L KG ALS PTI +AL+G LP +
Sbjct: 2167 LGKGLALSHSPTILEALEGNLPLQ 2190
>sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2
PE=1 SV=3
Length = 4640
Score = 177 bits (450), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 125/204 (61%), Gaps = 13/204 (6%)
Query: 40 KPQAVT--TVSFPDCVKWLTVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKL 97
KP V V+FP+CV+W+T+EFDP+CGT Q+ED L+L IP+R S + H+
Sbjct: 1992 KPACVMHYKVTFPECVRWMTIEFDPQCGTAQSEDVLRLLIPVRTVQNSGYGPKLTSVHEN 2051
Query: 98 SN---------GYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYEWYY 148
N G + WP +VLPGNE +F+LETASDYVKDD+A YGFKC GYE+
Sbjct: 2052 LNSWIELKKFSGSSGWPTMVLVLPGNEALFSLETASDYVKDDKASFYGFKCFAIGYEFSP 2111
Query: 149 NPGEGLHRLESELSFLGAMCAASLLKKDLILPPTGEELDEEWGESLEDLMENVYSKHSQL 208
P EG+ +LE EL+ LG +CAA+L+KKDL LP E ++ L V HS +
Sbjct: 2112 GPDEGVIQLEKELANLGGVCAAALMKKDLALPIGNELEEDLEILEEAAL--QVCKTHSGI 2169
Query: 209 LSKGFALSSIPTIHQALDGVLPYR 232
L KG ALS PTI +AL+G LP +
Sbjct: 2170 LGKGLALSHSPTILEALEGNLPLQ 2193
>sp|Q9NB71|HIW_DROME E3 ubiquitin-protein ligase highwire OS=Drosophila melanogaster
GN=hiw PE=1 SV=2
Length = 5233
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 100/176 (56%), Gaps = 20/176 (11%)
Query: 62 PKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLE 121
P CG +P+R ++P++ +I V K N + W ++LPGN V F+LE
Sbjct: 2620 PGCGNAPGSAAAPSSMPLRSQDPNDRE-WIVV--KKFNTASTWLHNVLILPGNCVEFSLE 2676
Query: 122 TASDYVKDDRAPSYGFKCLVTGYEWYYNP------GEGLHRLESELSFLGAMCAASLLKK 175
TAS Y +D YGFKCLV GY+ NP L RLE EL++LG MC+A+L+KK
Sbjct: 2677 TASLYAQDPHNNRYGFKCLVVGYD---NPTSINASNSCLIRLEQELAYLGGMCSANLMKK 2733
Query: 176 DLILPPTGEELDEEWGESLEDLMENVYSKHSQLLSKGFALSSIP-TIHQALDGVLP 230
+L LP D++ E + + E + + H+ LLSKGFALS T+HQAL+ LP
Sbjct: 2734 ELNLP------DDKDVEDMSGIEETINTHHT-LLSKGFALSEPQLTVHQALESYLP 2782
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 47 VSFPDCVKWLTVEFDPKCGTCQAEDTLQLFIPMRP 81
V FP CV+WLT+EFDP+CGT Q ED L L IPMRP
Sbjct: 2524 VEFPPCVQWLTIEFDPQCGTAQLEDYLLLSIPMRP 2558
>sp|Q17551|RPM1_CAEEL E3 ubiquitin-protein ligase rpm-1 OS=Caenorhabditis elegans GN=rpm-1
PE=1 SV=1
Length = 3766
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 55 WLTVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGN 114
++ V F P C T Q +D L +++ + + SY+ + ++WP Y ++LPGN
Sbjct: 1790 YICVRFSPDCQTAQFDDQLTIYLKI------DEHSYMPIERCYG---SEWPSYPMILPGN 1840
Query: 115 EVIFTLETASDYVKDDRAPSYGFKCLVTGYEWYYNPGEGLHRLESELSFLGAMCAASLLK 174
++F L+ +S +G+ VTGY YN + RLE +L +L A A ++
Sbjct: 1841 CLMFVLDASSAVEGATSEQMFGYHVTVTGYLVGYN--DSTMRLEQDLVWLSAN-ACRIMT 1897
Query: 175 KDLILPPTGEELDEEWGESLEDLMENVYSKHSQLLSKGFALSSIPTIHQ 223
+ I P E L + ED +++ KH LL KG +LS PT+ +
Sbjct: 1898 QLPINPSNIEHLS-----TAEDDTRHLFEKHGSLLKKGLSLSHSPTLSE 1941
>sp|Q5H057|DNLJ_XANOR DNA ligase OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=ligA PE=3 SV=2
Length = 841
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 111 LPGNEVIFTLETASD-YVKDDRAPSYGFKCLVTGYEWYYNPGEG----LHRLESELSFLG 165
L GN V LE + Y+ D + + + G + NP G L +L+S +S
Sbjct: 160 LKGNNVPAILEVRGEVYMPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRIS--- 216
Query: 166 AMCAASLLKKDLILPPTGEELDEEWGESLEDLMENVYSKHSQLLSK----GFALSSIPTI 221
++ L G L + + E++ +++ S HS +L++ GF +SS+ +
Sbjct: 217 -------AQRPLSFFAYGVGLIQVEQDLFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEV 269
Query: 222 HQALDGVLPY 231
Q DG+L Y
Sbjct: 270 VQGSDGLLAY 279
>sp|Q2P334|DNLJ_XANOM DNA ligase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
GN=ligA PE=3 SV=1
Length = 841
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 111 LPGNEVIFTLETASD-YVKDDRAPSYGFKCLVTGYEWYYNPGEG----LHRLESELSFLG 165
L GN V LE + Y+ D + + + G + NP G L +L+S +S
Sbjct: 160 LKGNNVPAILEVRGEVYMPRDGFSEFNKRAMARGEKLLANPRNGAAGSLRQLDSRIS--- 216
Query: 166 AMCAASLLKKDLILPPTGEELDEEWGESLEDLMENVYSKHSQLLSK----GFALSSIPTI 221
++ L G L + + E++ +++ S HS +L++ GF +SS+ +
Sbjct: 217 -------AQRPLSFFAYGVGLIQVEQDLFEEIPQSIASTHSAMLAQLRAWGFPVSSLVEV 269
Query: 222 HQALDGVLPY 231
Q DG+L Y
Sbjct: 270 VQGSDGLLAY 279
>sp|Q8TF30|WHAMM_HUMAN WASP homolog-associated protein with actin, membranes and
microtubules OS=Homo sapiens GN=WHAMM PE=1 SV=2
Length = 809
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 10 RLSNFVQDSHTTSITNSSG--------PTSLSVQDLWLKPQAVTTVSFPDCVKWLTVEFD 61
RL +F S+ N+SG P+ LS Q + L +V P K V
Sbjct: 541 RLRSFKDKRLAQSVRNTSGSEPVAPNLPSDLS-QQMCLPASHAVSVIHPSSRKTRGVPLS 599
Query: 62 -------PKCGTCQAEDTLQLFIPMRPENPSESSSYIAV 93
PKC C +Q+F+P+ + S+SS +++
Sbjct: 600 EAGNVKSPKCQNCHGNIPVQVFVPVGDQTHSKSSEELSL 638
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,467,328
Number of Sequences: 539616
Number of extensions: 3697955
Number of successful extensions: 6422
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6409
Number of HSP's gapped (non-prelim): 11
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)