Query psy15195
Match_columns 232
No_of_seqs 46 out of 48
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:59:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1428|consensus 100.0 6.4E-54 1.4E-58 439.1 17.4 196 12-231 1744-1946(3738)
2 PF00431 CUB: CUB domain CUB d 82.0 17 0.00036 26.3 9.1 71 53-140 39-109 (110)
3 cd00041 CUB CUB domain; extrac 69.9 39 0.00084 24.4 8.2 55 70-141 57-111 (113)
4 PF11623 DUF3252: Protein of u 51.7 12 0.00026 27.2 2.0 24 109-141 1-24 (53)
5 PF00868 Transglut_N: Transglu 48.8 1.2E+02 0.0026 24.3 7.6 66 55-124 36-103 (118)
6 KOG3378|consensus 47.3 13 0.00028 35.7 2.1 37 186-225 66-102 (385)
7 PRK02888 nitrous-oxide reducta 41.4 64 0.0014 33.6 6.1 71 55-141 544-617 (635)
8 PF12945 YcgR_2: Flagellar pro 40.0 42 0.00091 24.1 3.4 31 109-147 47-77 (87)
9 PF12606 RELT: Tumour necrosis 37.0 10 0.00023 27.0 -0.2 11 133-143 25-35 (50)
10 cd01202 FRS2 Fibroblast growth 26.2 44 0.00095 27.2 1.7 35 89-139 42-78 (102)
11 PF03564 DUF1759: Protein of u 24.7 1.2E+02 0.0026 24.0 3.9 55 169-227 74-128 (145)
12 PF14990 DUF4516: Domain of un 24.5 71 0.0015 22.7 2.3 21 165-185 24-44 (47)
13 smart00310 PTBI Phosphotyrosin 24.0 2.1E+02 0.0046 22.8 5.2 50 70-139 28-79 (98)
14 TIGR02657 amicyanin amicyanin. 21.7 1.7E+02 0.0036 21.5 4.0 72 57-145 5-76 (83)
15 PF06525 SoxE: Sulfocyanin (So 21.6 3.8E+02 0.0083 24.0 6.8 51 51-112 60-114 (196)
16 smart00137 MAM Domain in mepri 20.3 4.7E+02 0.01 21.2 8.9 86 34-125 47-142 (161)
No 1
>KOG1428|consensus
Probab=100.00 E-value=6.4e-54 Score=439.06 Aligned_cols=196 Identities=27% Similarity=0.479 Sum_probs=183.1
Q ss_pred CcccccccccccCCCCCCCccccceeEe------ecceeE-EEecCCcceEEEEEecCCcccccccceEEEeecCCCCCC
Q psy15195 12 SNFVQDSHTTSITNSSGPTSLSVQDLWL------KPQAVT-TVSFPDCVKWLTVEFDPKCGTCQAEDTLQLFIPMRPENP 84 (232)
Q Consensus 12 ~~~~~~s~~~~~~~~~~~~ttS~hy~~v------k~atv~-~V~FP~~V~wm~leFDprc~TaQ~eD~L~Iyip~~~~~~ 84 (232)
+++|+|| +.++++++-||++| |||+.+ +|.||++|+||||||||+|+|||.||+|+||+|.|.++
T Consensus 1744 ~~dS~DS-------G~dt~~s~~~~tVvESqHPYKP~t~~~~V~~~E~a~~i~v~FsPdC~TAQ~dD~L~i~l~i~~~S- 1815 (3738)
T KOG1428|consen 1744 SYDSDDS-------GCDTPYSGIVTTVVESQHPYKPNTSSSMVLLFEEADYICVRFSPDCQTAQFDDQLTIYLKIDEHS- 1815 (3738)
T ss_pred CCCCCCC-------CcCCccccceEEEeeccCCCCCcccceeeeecccccEEEEEeCCCcCcccccceEEEEEEecccc-
Confidence 6777777 77888999999999 899888 99999999999999999999999999999999998764
Q ss_pred CCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeEEEEEeeecCCCCchhHHHHHHHHHH
Q psy15195 85 SESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYEWYYNPGEGLHRLESELSFL 164 (232)
Q Consensus 85 ~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~ViGYe~~~~~~~~L~~LE~ELs~L 164 (232)
|+|+.|+||+ +||.++|||||||++|+||++|+|+++++++||||.|+|+||+..+ +++.++|||||+||
T Consensus 1816 -----~m~ier~~GS---~WPs~~miLPGN~~mF~LdasS~~~~~~seq~fGy~~~v~GY~~G~--nd~tmrLEqdLv~L 1885 (3738)
T KOG1428|consen 1816 -----YMPIERCYGS---EWPSYPMILPGNCLMFVLDASSAVEGATSEQMFGYHVTVTGYLVGY--NDSTMRLEQDLVWL 1885 (3738)
T ss_pred -----ceeehhccCC---CCCcceEEecCceEEEEEecchhhhccchhhhcceEEEEEEEEecC--CcchhHHHHHHHHh
Confidence 9999877774 9999999999999999999999999999999999999999999974 99999999999998
Q ss_pred HHHHHHHhhhhhcCCCCCCCCcccccccchHHHHHHHHHhhhhhhhhcccCCCcchHHHHhcCCCCC
Q psy15195 165 GAMCAASLLKKDLILPPTGEELDEEWGESLEDLMENVYSKHSQLLSKGFALSSIPTIHQALDGVLPY 231 (232)
Q Consensus 165 ga~cAa~Llk~dl~lP~~~~~~~~e~l~~~ee~a~~i~~~h~sLL~KGl~ls~~pTi~eal~~~lP~ 231 (232)
+| ++||+++|||+.++ ++|+++++||+|++++++|++||+|||+|||+|||.|+|+++||.
T Consensus 1886 ~A----~~~r~~~qLPI~~s--~~E~Ls~~Ed~t~hl~ekH~~lL~KGLsLSHSPTl~E~~t~~~P~ 1946 (3738)
T KOG1428|consen 1886 SA----NACRIMTQLPINPS--NIEHLSTAEDDTRHLFEKHGSLLKKGLSLSHSPTLSELCTKGQPP 1946 (3738)
T ss_pred hH----HHHHHHhcCCCCch--hHHHHHhhHHHHHHHHHhcchhhhcccccccCchHHHHHhCCCCC
Confidence 85 47788899998655 789999999999999999999999999999999999999999996
No 2
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=82.04 E-value=17 Score=26.32 Aligned_cols=71 Identities=15% Similarity=0.302 Sum_probs=43.3
Q ss_pred ceEEEEEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCC
Q psy15195 53 VKWLTVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRA 132 (232)
Q Consensus 53 V~wm~leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~ 132 (232)
|+.-..+||-++...-..|.|.||-..+.. .+.+.+|-+ ...|. .++..+|.|++.|.+. ...
T Consensus 39 I~l~f~~~~~~~~~~c~~d~l~v~~g~~~~--------~~~~~~~cg--~~~~~-~i~s~~~~l~i~f~s~------~~~ 101 (110)
T PF00431_consen 39 IRLTFLSFDLESSDSCCQDYLEVYDGNDES--------SPLLGRFCG--SSPPP-SIISSSNSLFIRFHSD------SSN 101 (110)
T ss_dssp EEEEEEEEEB--TTTSTSSEEEEESSSSTT--------SEEEEEESS--SSCCE-EEEESSSEEEEEEEES------SSS
T ss_pred eeeccccccceeeeeecccceeEEeecccc--------ceeeeeccC--CcCCc-cEEECCCEEEEEEEEC------CCC
Confidence 333334555553333346999999666432 234445544 35564 5789999999999986 344
Q ss_pred CccceeEE
Q psy15195 133 PSYGFKCL 140 (232)
Q Consensus 133 ~~yGFkC~ 140 (232)
+..||+.+
T Consensus 102 ~~~gF~~~ 109 (110)
T PF00431_consen 102 SSRGFKAT 109 (110)
T ss_dssp TTSEEEEE
T ss_pred CCccEEEE
Confidence 56788753
No 3
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=69.92 E-value=39 Score=24.40 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=36.3
Q ss_pred cceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeEEE
Q psy15195 70 EDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLV 141 (232)
Q Consensus 70 eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~V 141 (232)
.|.|.||-...... ..+.+|-+ .-+...++.+||.+.+.|-+.+. ...-||++..
T Consensus 57 ~d~l~i~~g~~~~~--------~~~~~~Cg---~~~~~~~~s~~~~~~i~f~s~~~------~~~~GF~~~y 111 (113)
T cd00041 57 YDYLEIYDGPSTSS--------PLLGRFCG---STLPPPIISSGNSLTVRFRSDSS------VTGRGFKATY 111 (113)
T ss_pred CcEEEEEcCCCCcc--------ccceeeEC---CCCCCCEEecCCEEEEEEEeCCC------CCCCCEEEEE
Confidence 69999997764321 12234443 12246689999999999987643 2567998765
No 4
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=51.69 E-value=12 Score=27.18 Aligned_cols=24 Identities=38% Similarity=0.740 Sum_probs=14.2
Q ss_pred eEecCCeEEEEEEccccccCCCCCCccceeEEE
Q psy15195 109 IVLPGNEVIFTLETASDYVKDDRAPSYGFKCLV 141 (232)
Q Consensus 109 lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~V 141 (232)
+|+||..|. ++|++..+|||.-.|
T Consensus 1 ~ilPG~~V~---------V~n~~~~Y~~y~G~V 24 (53)
T PF11623_consen 1 MILPGSTVR---------VKNPNDIYYGYEGFV 24 (53)
T ss_dssp ---TT-EEE---------E--TTSTTTT-EEEE
T ss_pred CccCCCEEE---------EeCCCCccchheEEE
Confidence 578998885 578999999998776
No 5
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=48.82 E-value=1.2e+02 Score=24.26 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=43.9
Q ss_pred EEEEEecCCcccccccceEEEeecCC--CCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccc
Q psy15195 55 WLTVEFDPKCGTCQAEDTLQLFIPMR--PENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETAS 124 (232)
Q Consensus 55 wm~leFDprc~TaQ~eD~L~Iyip~~--~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS 124 (232)
.|+|+|+-+ .-+..|.|.+..-.. +.....|....|+..... ...|--...-.-||++.+++-+..
T Consensus 36 ~i~l~f~r~--~~~~~d~l~l~~~~G~~P~~~~gT~~~~~~~~~~~--~~~W~a~v~~~~~~~~tv~V~spa 103 (118)
T PF00868_consen 36 TITLRFNRP--FDPSKDQLSLEFETGPNPSESKGTKVVFPVSSSLD--SSSWSARVESQDGNSVTVSVTSPA 103 (118)
T ss_dssp EEEEEESSS----TTTEEEEEEEEESSS--TTTTSEEEEEECSSS---TSSSEEEEEEEETTEEEEEEE--T
T ss_pred EEEEEEcCC--cCCCCcEEEEEEEEecccccCCCcEEEEEEccCCC--CCCEEEEEEecCCCEEEEEEECCC
Confidence 789999998 888889988775443 222123445666633333 579999999999999999998873
No 6
>KOG3378|consensus
Probab=47.33 E-value=13 Score=35.65 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=31.7
Q ss_pred cccccccchHHHHHHHHHhhhhhhhhcccCCCcchHHHHh
Q psy15195 186 LDEEWGESLEDLMENVYSKHSQLLSKGFALSSIPTIHQAL 225 (232)
Q Consensus 186 ~~~e~l~~~ee~a~~i~~~h~sLL~KGl~ls~~pTi~eal 225 (232)
.+++|++.++|-.+||..||.+| |..++|-|+|.|-|
T Consensus 66 kNIdDLssL~~~l~qig~KHral---qIK~ehypiVGe~L 102 (385)
T KOG3378|consen 66 KNIDDLSSLEEYLAQIGRKHRAL---QIKLEHYPIVGESL 102 (385)
T ss_pred cChhhHHHHHHHHHHHhhhhhhe---eechhhCccHHHHH
Confidence 46789999999999999999988 55688999988755
No 7
>PRK02888 nitrous-oxide reductase; Validated
Probab=41.36 E-value=64 Score=33.56 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=46.4
Q ss_pred EEEE---EecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCC
Q psy15195 55 WLTV---EFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDR 131 (232)
Q Consensus 55 wm~l---eFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~ 131 (232)
+|+- .|+|+.-+...-|.+++++-+-.. -+-|.+.|.- .+.--+..+.||....+.|.. ++
T Consensus 544 ym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~-------~~DViHGF~I--p~~nI~~dv~PG~t~svtF~a-------dk 607 (635)
T PRK02888 544 YMTSQAPAFGLREFTVKQGDEVTVIVTNLDK-------VEDLTHGFAI--PNYGVNMEVAPQATASVTFTA-------DK 607 (635)
T ss_pred EEEEEecccCCceEEecCCCEEEEEEEeCCc-------ccccccceee--cccCccEEEcCCceEEEEEEc-------CC
Confidence 4544 499999999999999999877311 0113344443 122246788999887777752 56
Q ss_pred CCccceeEEE
Q psy15195 132 APSYGFKCLV 141 (232)
Q Consensus 132 ~~~yGFkC~V 141 (232)
..-|-|.|+.
T Consensus 608 PGvy~~~Cte 617 (635)
T PRK02888 608 PGVYWYYCTW 617 (635)
T ss_pred CEEEEEECCc
Confidence 6677777764
No 8
>PF12945 YcgR_2: Flagellar protein YcgR; PDB: 2RDE_B 1YLN_A 3KYG_A.
Probab=39.98 E-value=42 Score=24.08 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=21.6
Q ss_pred eEecCCeEEEEEEccccccCCCCCCccceeEEEEEeeec
Q psy15195 109 IVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYEWY 147 (232)
Q Consensus 109 lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~ViGYe~~ 147 (232)
.+-+|++|.+.+-+.. +.|+|+|.|++....
T Consensus 47 ~l~~g~~v~v~~~~~~--------~~y~F~s~V~~~~~~ 77 (87)
T PF12945_consen 47 PLREGEEVIVRFISED--------GVYAFKSKVIGRISE 77 (87)
T ss_dssp CS-TT-EEEEEEEE-S--------CEEEEEEEEEEEE-S
T ss_pred eecCCCEEEEEEEECC--------eEEEEEEEEEEEEcC
Confidence 4458999998887652 299999999998733
No 9
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=37.00 E-value=10 Score=26.98 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=8.6
Q ss_pred CccceeEEEEE
Q psy15195 133 PSYGFKCLVTG 143 (232)
Q Consensus 133 ~~yGFkC~ViG 143 (232)
-.|||||+|--
T Consensus 25 K~ygYkht~d~ 35 (50)
T PF12606_consen 25 KAYGYKHTVDP 35 (50)
T ss_pred hccccccccCC
Confidence 36999999854
No 10
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=26.23 E-value=44 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=25.4
Q ss_pred ccce--eecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeE
Q psy15195 89 SYIA--VTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKC 139 (232)
Q Consensus 89 ~y~p--v~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC 139 (232)
.-|| .+|+||- |.-+|+||+..-. ..-...|-|+|
T Consensus 42 ~~WPl~~LRRYG~--------------d~~~FsFEAGRRC--~tGeG~f~F~t 78 (102)
T cd01202 42 VVWPLLCLRRYGY--------------NSDLFSFESGRRC--QTGEGIFAFRC 78 (102)
T ss_pred EEccHHHhHhhcc--------------CCCEEEEEccCcC--CCCCCEEEEEc
Confidence 3566 4789997 4578999998433 34557888988
No 11
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=24.73 E-value=1.2e+02 Score=24.03 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=39.5
Q ss_pred HHHhhhhhcCCCCCCCCcccccccchHHHHHHHHHhhhhhhhhcccCCCcchHHHHhcC
Q psy15195 169 AASLLKKDLILPPTGEELDEEWGESLEDLMENVYSKHSQLLSKGFALSSIPTIHQALDG 227 (232)
Q Consensus 169 Aa~Llk~dl~lP~~~~~~~~e~l~~~ee~a~~i~~~h~sLL~KGl~ls~~pTi~eal~~ 227 (232)
..+++.+..++|++.. ++.+.+...+..+-.-..+|-..|-.+.+..+++..+.+
T Consensus 74 ~~~~~~~l~~l~~~~~----~d~~~L~~~~~~v~~~i~~L~~lg~~~~~~~l~~~i~~K 128 (145)
T PF03564_consen 74 IQALLEELRNLPPISN----DDPEALRSLVDKVNNCIRALKALGVNVDDPLLISIILSK 128 (145)
T ss_pred HHHHHHHHhccccccc----hhHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4578889999997543 456666666667777778888889888865666655544
No 12
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=24.50 E-value=71 Score=22.66 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhhcCCCCCCCC
Q psy15195 165 GAMCAASLLKKDLILPPTGEE 185 (232)
Q Consensus 165 ga~cAa~Llk~dl~lP~~~~~ 185 (232)
||.|--+.+|.|+-+|+++..
T Consensus 24 GA~vVH~~ykPdltiP~i~~~ 44 (47)
T PF14990_consen 24 GASVVHNIYKPDLTIPEIPPK 44 (47)
T ss_pred hhHHHHHHhCccCCCCCCCCC
Confidence 443444889999999988753
No 13
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=23.99 E-value=2.1e+02 Score=22.77 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=31.4
Q ss_pred cceEEEeecCCCCCCCCCCccce--eecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeE
Q psy15195 70 EDTLQLFIPMRPENPSESSSYIA--VTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKC 139 (232)
Q Consensus 70 eD~L~Iyip~~~~~~~~t~~y~p--v~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC 139 (232)
.|.|.++-.. +. ...--|| .+|+||. |.-.|+||+. .--..-...|-|+|
T Consensus 28 ~~~L~L~~~~-~~---~~~~~wpl~~lRRyG~--------------~~~~FsfEaG--Rrc~tG~G~f~f~t 79 (98)
T smart00310 28 SETLVLWRLN-PR---VELVVWPLLSLRRYGR--------------DKNFFFFEAG--RRCVSGPGEFTFQT 79 (98)
T ss_pred CcEEEEEecC-CC---ccEEEeehhHeeeecC--------------CCCEEEEEcc--CcCCCCCCEEEEEc
Confidence 4556666522 11 1223577 7899997 5678999997 33334556788885
No 14
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=21.66 E-value=1.7e+02 Score=21.52 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=42.7
Q ss_pred EEEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccc
Q psy15195 57 TVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYG 136 (232)
Q Consensus 57 ~leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yG 136 (232)
-..|+|.--+.++-|.+.. ...+...+ + -...........| ...++-||.+..|.|+. ...|.
T Consensus 5 ~~~F~P~~i~v~~GdtVt~-~N~d~~~H--n----v~~~~g~~~~~~~-~~~~~~~g~~~~~tf~~---------~G~y~ 67 (83)
T TIGR02657 5 KMKYETPELHVKVGDTVTW-INREAMPH--N----VHFVAGVLGEAAL-KGPMMKKEQAYSLTFTE---------AGTYD 67 (83)
T ss_pred eeEEcCCEEEECCCCEEEE-EECCCCCc--c----EEecCCCCccccc-cccccCCCCEEEEECCC---------CEEEE
Confidence 4679999999999999875 44433211 0 0111111001233 23345788888887753 46899
Q ss_pred eeEEEEEee
Q psy15195 137 FKCLVTGYE 145 (232)
Q Consensus 137 FkC~ViGYe 145 (232)
|.|.+.-.+
T Consensus 68 y~C~~Hp~M 76 (83)
T TIGR02657 68 YHCTPHPFM 76 (83)
T ss_pred EEcCCCCCC
Confidence 999875543
No 15
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=21.60 E-value=3.8e+02 Score=24.05 Aligned_cols=51 Identities=12% Similarity=0.277 Sum_probs=26.9
Q ss_pred CcceEEEEEecCCcc----cccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEec
Q psy15195 51 DCVKWLTVEFDPKCG----TCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLP 112 (232)
Q Consensus 51 ~~V~wm~leFDprc~----TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllP 112 (232)
++|-|-.+.-|..-. -...+-.+.||+|.. |.|.=+|-+ ....|++.+|++
T Consensus 60 kTV~i~l~a~~~~~~~~nfnGts~G~m~i~VPAG----------w~V~i~f~N-~~~l~Hnl~iv~ 114 (196)
T PF06525_consen 60 KTVFIYLVAWSSGTNPFNFNGTSNGQMTIYVPAG----------WNVQITFTN-QESLPHNLVIVQ 114 (196)
T ss_pred CEEEEEEEEccCCCCceeeecccCCcEEEEEcCC----------CEEEEEEEc-CCCCCeeEEEEe
Confidence 445454444444220 123345699999984 445445555 345566655543
No 16
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=20.28 E-value=4.7e+02 Score=21.16 Aligned_cols=86 Identities=10% Similarity=0.087 Sum_probs=49.5
Q ss_pred cceeEe-----ecceeEEEe---cCCcceEEEEEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCC
Q psy15195 34 VQDLWL-----KPQAVTTVS---FPDCVKWLTVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWP 105 (232)
Q Consensus 34 ~hy~~v-----k~atv~~V~---FP~~V~wm~leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP 105 (232)
-||..| ++...+++. |+......||+|.=.-. ...-..|.||+...... . .-++...-|.....|-
T Consensus 47 G~y~~v~~~~~~~g~~A~L~SP~~~~~~~~~cl~F~Y~m~-G~~~g~L~V~~~~~~~~--~---~~~lw~~~g~~~~~W~ 120 (161)
T smart00137 47 GHFMFFETSSGAPGQTARLLSPPLYENRSTHCLTFWYYMY-GSGSGTLNVYVRENNGS--Q---DTLLWSRSGTQGGQWL 120 (161)
T ss_pred eeEEEEECCCCCCCCEEEEECCcccCCCCCeEEEEEEEec-CCCCCEEEEEEEeCCCC--C---ceEeEEEcCCCCCceE
Confidence 588888 233333211 33333456677763332 33445799999742211 1 1122223344356999
Q ss_pred CceeEec--CCeEEEEEEcccc
Q psy15195 106 QYTIVLP--GNEVIFTLETASD 125 (232)
Q Consensus 106 ~~~lllP--GN~v~FsLETAS~ 125 (232)
...|-|+ .+...+.||....
T Consensus 121 ~~~v~l~~~~~~fqi~fe~~~g 142 (161)
T smart00137 121 QAEVALSKWQQPFQVVFEGTRG 142 (161)
T ss_pred EEEEEecCCCCcEEEEEEEEEc
Confidence 9999997 6888888887754
Done!