Query psy15195
Match_columns 232
No_of_seqs 46 out of 48
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 23:00:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1spp_B Major seminal plasma gl 78.4 8.9 0.0003 28.4 7.4 70 53-145 42-111 (116)
2 2wno_A Tumor necrosis factor-i 77.1 24 0.00081 27.4 10.2 70 58-148 54-123 (149)
3 1sfp_A ASFP; spermadhesin, bov 68.1 19 0.00064 26.4 6.9 66 53-141 43-108 (114)
4 1spp_A Major seminal plasma gl 64.3 21 0.00073 26.0 6.6 64 55-142 41-104 (109)
5 4gz9_A Neuropilin-1, A5 protei 61.3 29 0.001 32.9 8.5 78 46-141 39-120 (577)
6 3poj_A Mannan-binding lectin s 58.4 49 0.0017 23.9 7.7 50 70-140 63-112 (115)
7 2jz2_A SSL0352 protein; SH3-li 50.5 8.7 0.0003 27.9 2.2 25 109-142 1-25 (66)
8 2qqk_A Neuropilin-2; VEGF rece 41.4 99 0.0034 28.9 8.6 58 69-143 62-119 (579)
9 1nt0_A MAsp2, mannose-binding 40.5 1.5E+02 0.005 25.0 8.8 85 32-142 178-275 (286)
10 4hci_A Cupredoxin 1; structura 39.0 18 0.00062 26.0 2.5 63 59-140 24-86 (100)
11 1nzi_A Complement C1S componen 36.9 1.3E+02 0.0046 22.6 9.8 38 107-148 82-119 (159)
12 2v76_A Docking protein 1; alte 36.2 12 0.00041 29.0 1.2 54 70-139 31-86 (107)
13 1p5t_A DOK1, docking protein 1 32.1 18 0.00063 28.9 1.6 53 71-139 34-88 (127)
14 3erx_A Pseudoazurin; copper pr 25.5 1.5E+02 0.0051 22.6 5.8 62 57-140 15-79 (123)
15 2qqo_A Neuropilin-2; VEGF rece 25.5 3.7E+02 0.013 24.2 10.6 59 70-145 69-127 (460)
16 2cua_A Protein (CUA); CUA cent 22.8 68 0.0023 25.0 3.4 60 59-140 56-117 (135)
17 2qqm_A Neuropilin-1; VEGF rece 22.8 4.2E+02 0.014 23.8 10.4 60 69-145 71-130 (450)
18 2qqk_A Neuropilin-2; VEGF rece 22.1 4.8E+02 0.016 24.2 9.8 60 69-145 187-246 (579)
19 1b3i_A PETE protein, protein ( 22.0 1E+02 0.0034 21.4 3.9 67 58-140 14-83 (97)
20 1iuz_A Plastocyanin; electron 21.7 83 0.0028 22.2 3.5 62 58-140 13-84 (98)
21 1iby_A Nitrosocyanin; RED copp 20.0 71 0.0024 23.1 2.8 66 59-143 34-99 (112)
No 1
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=78.37 E-value=8.9 Score=28.40 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=47.1
Q ss_pred ceEEEEEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCC
Q psy15195 53 VKWLTVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRA 132 (232)
Q Consensus 53 V~wm~leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~ 132 (232)
|+.-...||=+|. .|+|.||-.... -+.+.+|-+ +. | ..++-.||.+.+.|-|.+. .
T Consensus 42 I~l~f~~f~l~C~----~D~l~i~dg~~~---------~~~~~~~CG--~~-p-~~~~S~~n~l~v~F~Sd~~------~ 98 (116)
T 1spp_B 42 VRMAIPYLNLACG----KEYVEVFDGLLS---------GPSYGKLCA--GA-A-IVFLSTANTMTIKYNRISG------N 98 (116)
T ss_dssp EEEEEEEEECCBT----TEEEEEESSSTT---------SCEEEEESE--EE-E-EEEECSSSEEEEEEEESSC------S
T ss_pred EEEEEeeCcccCC----CCEEEEEcCCCC---------CcccccccC--cC-C-CCEEecCCEEEEEEEECCC------C
Confidence 4444446776775 499999965422 135556655 24 7 6788899999999987643 3
Q ss_pred CccceeEEEEEee
Q psy15195 133 PSYGFKCLVTGYE 145 (232)
Q Consensus 133 ~~yGFkC~ViGYe 145 (232)
..-||++......
T Consensus 99 ~~~GF~~~y~~~~ 111 (116)
T 1spp_B 99 SSSPFLIYFYGSS 111 (116)
T ss_dssp CCCCCEEEEEEEC
T ss_pred CCCCEEEEEEEeC
Confidence 4679998876543
No 2
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=77.13 E-value=24 Score=27.45 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=46.1
Q ss_pred EEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccce
Q psy15195 58 VEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGF 137 (232)
Q Consensus 58 leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGF 137 (232)
||-++.|. .|+|.||-..... -+.+.+|-+ +.-| ..++-.||.+.+.|-|.+. ...-||
T Consensus 54 le~~~~C~----~D~l~I~dg~~~~--------~~~~~~~CG--~~~p-~~~~S~~n~l~v~F~Sd~~------~~~~GF 112 (149)
T 2wno_A 54 LEDDPGCL----ADYVEIYDSYDDV--------HGFVGRYCG--DELP-DDIISTGNVMTLKFLSDAS------VTAGGF 112 (149)
T ss_dssp CCCCTTCC----SSEEEEESSSSSS--------SSEEEEECS--SSCC-CCEECSSSEEEEEEECCSS------CCCCEE
T ss_pred ecCCCCCC----CCEEEEecCCCCC--------cceeeeEcC--CCCC-CCEEEeCCEEEEEEEECCC------CCCCCE
Confidence 33344564 6999999665322 134445554 2445 4788899999999987643 356799
Q ss_pred eEEEEEeeecC
Q psy15195 138 KCLVTGYEWYY 148 (232)
Q Consensus 138 kC~ViGYe~~~ 148 (232)
++........+
T Consensus 113 ~a~y~~~~~~~ 123 (149)
T 2wno_A 113 QIKYVAMDPVS 123 (149)
T ss_dssp EEEEEEECC--
T ss_pred EEEEEEECCCc
Confidence 99988877654
No 3
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=68.12 E-value=19 Score=26.43 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=43.7
Q ss_pred ceEEEEEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCC
Q psy15195 53 VKWLTVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRA 132 (232)
Q Consensus 53 V~wm~leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~ 132 (232)
|+.-...||-+|. .|+|.||-.... -+.+.+|-+ +. | ..++-.||.+.+.|-+.+. .
T Consensus 43 I~l~f~~f~l~C~----~D~l~i~dg~~~---------~~~~~~~CG--~~-p-~~~~S~~n~l~v~F~Sd~~------~ 99 (114)
T 1sfp_A 43 VRVSIQYLQLNCN----KESLEIIDGLPG---------SPVLGKICE--GS-L-MDYRSSGSIMTVKYIREPE------H 99 (114)
T ss_dssp EEEEEEEEECCTT----TEEEEEESSSTT---------SCEEEEESE--EE-E-EEEECSSSEEEEEEEECTT------S
T ss_pred EEEEEeeeeeecC----CCEEEEEcCCCC---------CcceeEecC--cC-C-CCEEecCCeEEEEEEECCC------C
Confidence 3333346777774 599999955421 135556655 24 7 5888899999999988643 2
Q ss_pred CccceeEEE
Q psy15195 133 PSYGFKCLV 141 (232)
Q Consensus 133 ~~yGFkC~V 141 (232)
..-||+..-
T Consensus 100 ~~~GF~~~y 108 (114)
T 1sfp_A 100 PASFYEVLY 108 (114)
T ss_dssp CCCCCEEEE
T ss_pred CCCCEEEEE
Confidence 457888764
No 4
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=64.30 E-value=21 Score=26.03 Aligned_cols=64 Identities=8% Similarity=0.078 Sum_probs=41.8
Q ss_pred EEEEEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCc
Q psy15195 55 WLTVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPS 134 (232)
Q Consensus 55 wm~leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~ 134 (232)
.-...||-+|. .|+|.||-.... -+.+.+|-+ . . | ..+.- ||.+.+.|-|.+. .+.
T Consensus 41 l~f~~f~l~C~----~D~l~I~dg~~~---------~~~~~~~CG-~-~-p-~~~~S-~n~l~v~F~Sd~~------~~~ 96 (109)
T 1spp_A 41 VSIPTLNLTCG----KEYVEVLEGAPG---------SKSLGKFCE-G-L-S-ILNRG-SSGMTVKYKRDSG------HPA 96 (109)
T ss_dssp EEEEEEECCTT----TEEEEEESSSTT---------SCEEEEESE-E-E-E-EEEEE-CTTCEEEEEECTT------CCC
T ss_pred EEEeeeeccCC----CCEEEEEeCCCC---------CchhhhhhC-C-C-C-CCEEE-CCEEEEEEEeCCC------CCC
Confidence 33346777774 599999955421 135556655 2 3 6 45666 9999999988643 356
Q ss_pred cceeEEEE
Q psy15195 135 YGFKCLVT 142 (232)
Q Consensus 135 yGFkC~Vi 142 (232)
-||++...
T Consensus 97 ~GF~~~y~ 104 (109)
T 1spp_A 97 SPYEIIFL 104 (109)
T ss_dssp CCCEEEEE
T ss_pred CCEEEEEE
Confidence 89988754
No 5
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=61.31 E-value=29 Score=32.90 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=46.5
Q ss_pred EEecCCcceEEEEEec----CCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEE
Q psy15195 46 TVSFPDCVKWLTVEFD----PKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLE 121 (232)
Q Consensus 46 ~V~FP~~V~wm~leFD----prc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLE 121 (232)
.|.-|+.-+-+.|.|+ -+.. .=..|+|.||-..... .+++.+|-+ +.-|. .++-.||.+++.|.
T Consensus 39 ~I~~p~~~~~I~L~F~~~f~le~~-~C~~Dyl~I~dG~~~~--------~~~lg~~CG--~~~p~-~i~S~~n~l~v~F~ 106 (577)
T 4gz9_A 39 LIQAPEPYQRIMINFNPHFDLEDR-DCKYDYVEVIDGENEG--------GRLWGKFCG--KIAPS-PVVSSGPFLFIKFV 106 (577)
T ss_dssp EEECSSTTCCEEEEECSCCBCCCG-GGTSSEEEEEESSSTT--------SEEEEEECS--SSCCC-CEECSSSEEEEEEE
T ss_pred EEEECCCCcEEEEEEEeeeeecCC-CCCccEEEEEeCCCCC--------CcEEEEecC--CCCCC-CEEEeCCeEEEEEE
Confidence 5555654334455553 2211 1136999999765322 345555554 34454 68899999999998
Q ss_pred ccccccCCCCCCccceeEEE
Q psy15195 122 TASDYVKDDRAPSYGFKCLV 141 (232)
Q Consensus 122 TAS~y~~~~~~~~yGFkC~V 141 (232)
|-+. ...-||+...
T Consensus 107 SD~s------~~~~GF~a~y 120 (577)
T 4gz9_A 107 SDYE------THGAGFSIRY 120 (577)
T ss_dssp CCSS------CCCCBCEEEE
T ss_pred ECCC------CCCCCeEEEE
Confidence 7532 3345887764
No 6
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=58.42 E-value=49 Score=23.85 Aligned_cols=50 Identities=10% Similarity=0.136 Sum_probs=33.9
Q ss_pred cceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeEE
Q psy15195 70 EDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCL 140 (232)
Q Consensus 70 eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~ 140 (232)
.|+|.||-.. +.+.+|-+ ..-| ..++-.||.+.+.|-+.. ....-||+..
T Consensus 63 ~D~l~i~dg~------------~~~~~~CG--~~~p-~~~~s~~~~l~i~F~Sd~------~~~~~GF~~~ 112 (115)
T 3poj_A 63 YDYIKIKAGS------------KVWGPFCG--EKSP-EPISTQSHSIQILFRSDN------SGENRGWRLS 112 (115)
T ss_dssp SCEEEEEETT------------EEEEEECB--SSCC-CCEECCCSEEEEEEECCS------SCCCCBCEEE
T ss_pred CeEEEEEcCC------------cccccCcC--CCCC-CCEEecCCEEEEEEEcCC------CCCCCCEEEE
Confidence 6999999543 13334544 2445 468889999999998753 3345788875
No 7
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=50.45 E-value=8.7 Score=27.91 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=20.4
Q ss_pred eEecCCeEEEEEEccccccCCCCCCccceeEEEE
Q psy15195 109 IVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVT 142 (232)
Q Consensus 109 lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~Vi 142 (232)
+|+||..|. ++|++..+|||.-.|-
T Consensus 1 ~ilPG~~V~---------V~np~~~Yy~y~G~VQ 25 (66)
T 2jz2_A 1 MIFPGATVR---------VTNVDDTYYRFEGLVQ 25 (66)
T ss_dssp CCCTTCEEE---------ECCTTSTTBTCEEEEE
T ss_pred CccCCCEEE---------EeCCCCcccceeEEEE
Confidence 578998885 5789999999987763
No 8
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=41.36 E-value=99 Score=28.94 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=36.5
Q ss_pred ccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeEEEEE
Q psy15195 69 AEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTG 143 (232)
Q Consensus 69 ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~ViG 143 (232)
..|+|.||-...... +.+.+|-+ ..-| ..++-.||.+.+.|-|.+. ...-||+....-
T Consensus 62 ~~D~l~i~dg~~~~~--------~~l~~~CG--~~~p-~~i~S~~n~l~v~F~Sd~~------~~~~GF~~~y~~ 119 (579)
T 2qqk_A 62 KYDFIEIRDGDSESA--------DLLGKHCG--NIAP-PTIISSGSMLYIKFTSDYA------RQGAGFSLRYEI 119 (579)
T ss_dssp SSSEEEEEESSSTTS--------EEEEEECT--TSCC-CCEECSSSEEEEEEECC---------CCCBCEEEEEE
T ss_pred CeeEEEEEeCCCCCc--------ceeeeECC--CCCC-CCEEecCCEEEEEEEECCC------CCCCceEEEEEE
Confidence 379999997653321 34445544 3456 4578899999999987642 234588776543
No 9
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=40.47 E-value=1.5e+02 Score=24.99 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred cccceeEeecceeE---EEecCCcceEEEEEe-c---------CCcccccccceEEEeecCCCCCCCCCCccceeecccC
Q psy15195 32 LSVQDLWLKPQAVT---TVSFPDCVKWLTVEF-D---------PKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLS 98 (232)
Q Consensus 32 tS~hy~~vk~atv~---~V~FP~~V~wm~leF-D---------prc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~ 98 (232)
+||.|=-..|+-.. .|.-|+.- -+.|+| | ..| ..|+|.||-.. +.+.+|-
T Consensus 178 ~SP~yP~~Yp~~~~C~w~I~~~~g~-~I~l~f~~~f~le~~~~~~C----~~D~l~i~dg~------------~~~~~~C 240 (286)
T 1nt0_A 178 SSPEYPQPYPKLSSCAYNIRLEEGF-SITLDFVESFDVEMHPEAQC----PYDSLKIQTDK------------REYGPFC 240 (286)
T ss_dssp ECTTTTSCCCSSCEEEEEEECCSSC-EEEEEECSCCBBCCC----C------CEEEEECSS------------CEEEEEC
T ss_pred eCCCCCCCCCCCCEEEEEEECCCce-EEEEEEeceEEeccCCCCCC----CCcEEEEEeCC------------cceEEEc
Q ss_pred CCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeEEEE
Q psy15195 99 NGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVT 142 (232)
Q Consensus 99 ~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~Vi 142 (232)
+ .-.-..++-.||.+.+.|-|. ...+.-||+....
T Consensus 241 G---~~~p~~~~S~~n~l~i~F~sd------~~~~~~GF~~~y~ 275 (286)
T 1nt0_A 241 G---KTLPPRIETDSNKVTITFTTD------ESGNHTGWKIHYT 275 (286)
T ss_dssp B---SSCCCCEECSSSEEEEEEECC------SCCCCCBCEEEEE
T ss_pred C---CCCCCCEEeeCCEEEEEEEeC------CCCCCCCEEEEEE
No 10
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=39.00 E-value=18 Score=25.96 Aligned_cols=63 Identities=21% Similarity=0.357 Sum_probs=38.4
Q ss_pred EecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCcccee
Q psy15195 59 EFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFK 138 (232)
Q Consensus 59 eFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFk 138 (232)
.|+|.--+.++-|.+++.+.+..... -.++ ...++ ....+.||....+.|. -++...|.|.
T Consensus 24 ~F~P~~i~v~~G~tV~~~~~n~d~~~---H~~~--~~~~~-------~~~~~~pg~~~~~~~t-------~~~~G~Y~y~ 84 (100)
T 4hci_A 24 YFNPNVITIPINESTTLLLKNKGKSE---HTFT--IKKLG-------IDVVVESGKEKNITVK-------PKSAGTYELI 84 (100)
T ss_dssp EEESSEEEECTTSCEEEEEEECSSSC---EEEE--EGGGT-------EEEEECTTCEEEEEEC-------CCSCEEEEEE
T ss_pred EEeCCEEEECCCCEEEEEEEcCCCce---EEEE--EecCC-------cceeecCCcceeEEEe-------cccCceEEEE
Confidence 58999889999998876654422110 0111 11222 2356788987776663 2566789999
Q ss_pred EE
Q psy15195 139 CL 140 (232)
Q Consensus 139 C~ 140 (232)
|.
T Consensus 85 C~ 86 (100)
T 4hci_A 85 CR 86 (100)
T ss_dssp CT
T ss_pred Cc
Confidence 95
No 11
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=36.93 E-value=1.3e+02 Score=22.61 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=27.6
Q ss_pred ceeEecCCeEEEEEEccccccCCCCCCccceeEEEEEeeecC
Q psy15195 107 YTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYEWYY 148 (232)
Q Consensus 107 ~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~ViGYe~~~ 148 (232)
..++-.||.+.+.|.|.+...+ ..-||+......+..+
T Consensus 82 ~~~~S~~n~l~v~F~Sd~~~~~----~~~GF~~~y~~~d~~e 119 (159)
T 1nzi_A 82 EEFQVPYNKLQVIFKSDFSNEE----RFTGFAAYYVATDINE 119 (159)
T ss_dssp EEEEESSSEEEEEEEECSCCTT----CCCEEEEEEEEEECCT
T ss_pred eeEEecCCeEEEEEEecCccCc----ccccceeeeecccCcc
Confidence 5789999999999998644322 2579998776665443
No 12
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens}
Probab=36.24 E-value=12 Score=28.99 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=30.8
Q ss_pred cceEEEeecCCCCCCCCCCccce--eecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeE
Q psy15195 70 EDTLQLFIPMRPENPSESSSYIA--VTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKC 139 (232)
Q Consensus 70 eD~L~Iyip~~~~~~~~t~~y~p--v~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC 139 (232)
+|.|.|+.+......+.....|| .+|+||- +.-.|+||+...- ..-...|.|+|
T Consensus 31 ~~~l~L~~~~~~~~~~~~~~~Wp~~~LRryG~--------------d~~~FsFEaGRrc--~tG~G~f~F~~ 86 (107)
T 2v76_A 31 AERLTLLTVGAQSQILEPLLSWPYTLLRRYGR--------------DKVMFSFEAGRRC--PSGPGTFTFQT 86 (107)
T ss_dssp SSEEEEEEEC----CEEEEEEEEGGGEEEEEE--------------CSSEEEEEECTTS--TTCSEEEEEEC
T ss_pred CCEEEEEecCccCCCCceeEEEEhHHhhhcCc--------------cCCEEEEEecCCC--CCCCcEEEEEe
Confidence 35566665432111111223688 7899997 2357999998444 33455788875
No 13
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} SCOP: b.55.1.2 PDB: 1uef_A*
Probab=32.05 E-value=18 Score=28.92 Aligned_cols=53 Identities=13% Similarity=0.280 Sum_probs=32.0
Q ss_pred ceEEEeecCCCCCCCCCCccce--eecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeE
Q psy15195 71 DTLQLFIPMRPENPSESSSYIA--VTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKC 139 (232)
Q Consensus 71 D~L~Iyip~~~~~~~~t~~y~p--v~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC 139 (232)
|.|.|+.+.......+..-.|| .+|+||- +.-.|+||+...- ..-...|.|+|
T Consensus 34 ~~l~L~~~~~~~~~~~~l~~Wp~~~LRryG~--------------d~~~FsFEaGRrC--~tGeG~f~F~t 88 (127)
T 1p5t_A 34 EKLTLLTLGAQSQILEPLLFWPYTLLRRYGR--------------DKVMFSFEAGRRC--PSGPGTFTFQT 88 (127)
T ss_dssp SEEEEEEECTTTCSEEEEEEEEGGGEEEEEE--------------CSSEEEEEECTTS--TTCSEEEEEEC
T ss_pred CEEEEEecCcccCCCcceEEEehHHhhhcCc--------------cCCEEEEEecCCC--CCCCcEEEEEe
Confidence 5566665432111111224688 7899996 3468999998544 33456888875
No 14
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=25.48 E-value=1.5e+02 Score=22.63 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=41.2
Q ss_pred EEEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCce---eEecCCeEEEEEEccccccCCCCCC
Q psy15195 57 TVEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYT---IVLPGNEVIFTLETASDYVKDDRAP 133 (232)
Q Consensus 57 ~leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~---lllPGN~v~FsLETAS~y~~~~~~~ 133 (232)
.+.|+|.--+..+-|.+........+. +. +. ...||... .+-||.+..+.|+ +..
T Consensus 15 ~~~F~P~~i~V~~GdtV~f~~~~~~H~---------v~--~~--~~~~P~g~~~f~~~pg~t~s~TF~---------~pG 72 (123)
T 3erx_A 15 AMVFEPAFVRAEPGDVINFVPTDKSHN---------VE--AI--KEILPEGVESFKSKINESYTLTVT---------EPG 72 (123)
T ss_dssp EEEEESSEEEECTTEEEEEEESSTTCC---------CE--EC--TTSSCTTCCCCBCCTTCCEEEEEC---------SCE
T ss_pred cEeEeCCEEEECCCCEEEEEECCCCce---------EE--Ec--CCcCCCCccceecCCCCEEEEEeC---------CCe
Confidence 378999999999999998776553322 10 01 11345431 2358988888883 457
Q ss_pred ccceeEE
Q psy15195 134 SYGFKCL 140 (232)
Q Consensus 134 ~yGFkC~ 140 (232)
.|.|.|+
T Consensus 73 ~y~y~C~ 79 (123)
T 3erx_A 73 LYGVKCT 79 (123)
T ss_dssp EEEEECG
T ss_pred EEEEEeC
Confidence 8889998
No 15
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=25.45 E-value=3.7e+02 Score=24.20 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=40.8
Q ss_pred cceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeEEEEEee
Q psy15195 70 EDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYE 145 (232)
Q Consensus 70 eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~ViGYe 145 (232)
.|+|.||-..... -|.+.+|-+ +.-|. .++-.||.+.+.|-|.+. ...-||++......
T Consensus 69 ~D~l~i~dg~~~~--------~~~~~~~CG--~~~p~-~i~S~~n~l~v~F~Sd~~------~~~~GF~~~y~~~~ 127 (460)
T 2qqo_A 69 YDWLDIWDGIPHV--------GPLIGKYCG--TKTPS-ELRSSTGILSLTFHTDMA------VAKDGFSARYYLVH 127 (460)
T ss_dssp SSEEEEESSSTTT--------SCEEEEECT--TCCCC-CEEECSSEEEEEEECCSS------CCCCEEEEEEEEEC
T ss_pred CCEEEEEcCCCCC--------CcccceEeC--CcCCc-CEEeeCCEEEEEEeccce------eecCcEEEEEEEEe
Confidence 6999999665322 234555554 34564 678899999999987643 34579999877654
No 16
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=22.79 E-value=68 Score=24.96 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=35.7
Q ss_pred EecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecC--CeEEEEEEccccccCCCCCCccc
Q psy15195 59 EFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPG--NEVIFTLETASDYVKDDRAPSYG 136 (232)
Q Consensus 59 eFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPG--N~v~FsLETAS~y~~~~~~~~yG 136 (232)
.|+|..-+....|.+++.+.+..--+ .+| + ..++. ...++|| |+++|.+ ++...|.
T Consensus 56 ~f~P~~l~Vp~G~~V~~~vts~DV~H----sf~-i-p~~~~-------k~d~~PG~~~~~~~~~---------~~~G~y~ 113 (135)
T 2cua_A 56 GYQPNPIEVPQGAEIVFKITSPDVIH----GFH-V-EGTNI-------NVEVLPGEVSTVRYTF---------KRPGEYR 113 (135)
T ss_dssp EEESSSEEEETTSEEEEEEEBSSSCE----EEE-E-TTSSC-------EEEECBTBCEEEEEEC---------CSCEEEE
T ss_pred EEECCEEEEcCCCEEEEEEEeCCccc----eEE-e-cCCCc-------eeEeCCCCcEEEEEEc---------CCCEEEE
Confidence 46788778888888887765532100 121 1 12232 3568999 6777766 4456677
Q ss_pred eeEE
Q psy15195 137 FKCL 140 (232)
Q Consensus 137 FkC~ 140 (232)
|.|+
T Consensus 114 ~~C~ 117 (135)
T 2cua_A 114 IICN 117 (135)
T ss_dssp EECC
T ss_pred EECc
Confidence 7774
No 17
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=22.76 E-value=4.2e+02 Score=23.76 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=41.6
Q ss_pred ccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeEEEEEee
Q psy15195 69 AEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYE 145 (232)
Q Consensus 69 ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~ViGYe 145 (232)
..|+|.||-..... -|.+.+|-+ +.=|. .++-.||.+.+.|-|.+. ...-||++......
T Consensus 71 ~~D~l~i~dg~~~~--------~~~~~~~CG--~~~p~-~i~S~~n~l~v~F~Sd~~------~~~~GF~~~y~~~~ 130 (450)
T 2qqm_A 71 RYDRLEIWDGFPDV--------GPHIGRYCG--QKTPG-RIRSSSGILSMVFYTDSA------IAKEGFSANYSVLQ 130 (450)
T ss_dssp CSSEEEEESSSTTT--------SCEEEEECT--TCCCC-EEEECSSEEEEEEECCSS------CCCCEEEEEEEECC
T ss_pred CCcEEEEecCCCCC--------CccceeecC--CcCCC-cEEEcCCEEEEEEEeCCc------cccCCeEEEEeccc
Confidence 47999999665322 234555554 24454 588999999999987643 34689999877664
No 18
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=22.06 E-value=4.8e+02 Score=24.22 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=40.3
Q ss_pred ccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCccceeEEEEEee
Q psy15195 69 AEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYE 145 (232)
Q Consensus 69 ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFkC~ViGYe 145 (232)
..|+|.||-..... -|.+.+|-+ ..-| ..++-.||.+.+.|.|... .+.-||++...-..
T Consensus 187 ~~D~l~I~dg~~~~--------~~~~~~~CG--~~~p-~~i~S~~n~l~i~F~sd~~------~~~~GF~~~y~~~~ 246 (579)
T 2qqk_A 187 KYDWLDIWDGIPHV--------GPLIGKYCG--TKTP-SELRSSTGILSLTFHTDMA------VAKDGFSARYYLVH 246 (579)
T ss_dssp -CCEEEEESSSTTT--------SCEEEEECS--SSCC-CCEEECSSEEEEEEECCSS------CCCCEEEEEEEEEE
T ss_pred CCEEEEEEeCCCCC--------CceeEEeCC--CCCC-CcEEeeCCeEEEEEecccc------ccccceEEEEEEEe
Confidence 36999999665322 235555554 2445 4578899999999988643 34679999876554
No 19
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=22.05 E-value=1e+02 Score=21.42 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=37.6
Q ss_pred EEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCC--CCCCCCC-ceeEecCCeEEEEEEccccccCCCCCCc
Q psy15195 58 VEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSN--GYTQWPQ-YTIVLPGNEVIFTLETASDYVKDDRAPS 134 (232)
Q Consensus 58 leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~--~~s~WP~-~~lllPGN~v~FsLETAS~y~~~~~~~~ 134 (232)
..|+|.--+.++-|.+.+. ..+...+ .+- +...+. ....|.. ...+-||.+..+.| ++...
T Consensus 14 ~~F~P~~i~v~~G~~V~~~-n~~~~~H-----~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~tf---------~~~G~ 77 (97)
T 1b3i_A 14 PLYEPKALSISAGDTVEFV-MNKVGPH-----NVI-FDKVPAGESAPALSNTKLAIAPGSFYSVTL---------GTPGT 77 (97)
T ss_dssp EEEESSEEEECTTCEEEEE-ECSSCCC-----CBE-EEECCTTSCHHHHCBCCCCCSCSCCEEEEC---------CSCSE
T ss_pred cEEeCCEEEECCCCEEEEE-ECCCCCe-----EEE-EeCCCCccccccccccceecCCCCEEEEEe---------CCCeE
Confidence 6899999999999987654 2221111 011 111110 0011222 34567898887766 35577
Q ss_pred cceeEE
Q psy15195 135 YGFKCL 140 (232)
Q Consensus 135 yGFkC~ 140 (232)
|-|.|.
T Consensus 78 y~y~C~ 83 (97)
T 1b3i_A 78 YSFYCT 83 (97)
T ss_dssp EEEECS
T ss_pred EEEEcc
Confidence 999997
No 20
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=21.74 E-value=83 Score=22.17 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=37.6
Q ss_pred EEecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCc----------eeEecCCeEEEEEEcccccc
Q psy15195 58 VEFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQY----------TIVLPGNEVIFTLETASDYV 127 (232)
Q Consensus 58 leFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~----------~lllPGN~v~FsLETAS~y~ 127 (232)
..|+|.--+.++-|.+.+.-. +...+ . + .+. ...||.. .++-||.+..+.|
T Consensus 13 ~~F~P~~i~v~~GdtV~~~n~-~~~~H-----~--v--~~~--~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf------- 73 (98)
T 1iuz_A 13 LAFVPSKISVAAGEAIEFVNN-AGFPH-----N--I--VFD--EDAVPAGVDADAISYDDYLNSKGETVVRKL------- 73 (98)
T ss_dssp CSEESSEEEECTTCEEEEEEC-SSCCE-----E--E--EEC--TTSSCTTCCHHHHCEEEEECSTTCEEEEEC-------
T ss_pred cEEeCCEEEECCCCEEEEEEC-CCCCE-----E--E--EEe--CCCCccccccccccccccccCCCCEEEEEc-------
Confidence 579999999999998876422 21110 0 1 011 1245542 3567898877766
Q ss_pred CCCCCCccceeEE
Q psy15195 128 KDDRAPSYGFKCL 140 (232)
Q Consensus 128 ~~~~~~~yGFkC~ 140 (232)
++...|-|.|.
T Consensus 74 --~~~G~y~y~C~ 84 (98)
T 1iuz_A 74 --STPGVYGVYCE 84 (98)
T ss_dssp --CSCEEEEEECT
T ss_pred --CCCEEEEEEch
Confidence 34567888886
No 21
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=20.00 E-value=71 Score=23.05 Aligned_cols=66 Identities=11% Similarity=0.276 Sum_probs=42.7
Q ss_pred EecCCcccccccceEEEeecCCCCCCCCCCccceeecccCCCCCCCCCceeEecCCeEEEEEEccccccCCCCCCcccee
Q psy15195 59 EFDPKCGTCQAEDTLQLFIPMRPENPSESSSYIAVTHKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFK 138 (232)
Q Consensus 59 eFDprc~TaQ~eD~L~Iyip~~~~~~~~t~~y~pv~~~f~~~~s~WP~~~lllPGN~v~FsLETAS~y~~~~~~~~yGFk 138 (232)
.|+|.--+..+-|.+++.+.+..... -.+ - +..++ -...+.||.+..+.|. + ++...|.|.
T Consensus 34 ~f~p~~i~v~~G~~V~~~~~n~d~~~---H~~-~-i~~~~-------~~~~i~pG~~~~~~f~-~------~~~G~y~~~ 94 (112)
T 1iby_A 34 LNEPETLVVKKGDAVKVVVENKSPIS---EGF-S-IDAFG-------VQEVIKAGETKTISFT-A------DKAGAFTIW 94 (112)
T ss_dssp EEESCEEEEETTCEEEEEEEECSSSC---EEE-E-EGGGT-------EEEEECTTCEEEEEEE-C------CSCEEEEEB
T ss_pred EEcCCEEEEeCCCEEEEEEEECCCCe---EEE-E-EcCCC-------ceeEeCCCCEEEEEEE-C------CCCEEEEEE
Confidence 48999999999999998665533210 011 1 11222 1456889998888884 2 466789999
Q ss_pred EEEEE
Q psy15195 139 CLVTG 143 (232)
Q Consensus 139 C~ViG 143 (232)
|...+
T Consensus 95 C~~~~ 99 (112)
T 1iby_A 95 CQLHP 99 (112)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 97654
Done!