RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15195
(232 letters)
>gnl|CDD|234154 TIGR03272, methan_mark_6, putative methanogenesis marker protein 6.
Members of this protein family, to date, are found in a
completed prokaryotic genome if and only if the species
is one of the archaeal methanogens. The exact function
is unknown, but likely is linked to methanogenesis or a
process closely connected to it [Energy metabolism,
Methanogenesis].
Length = 132
Score = 28.5 bits (64), Expect = 1.4
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 150 PGEGLHRLESELSFLGAMCAASLLKKDLILPPTGEELDEEWGESLEDLME 199
P G H+LE+E+ L + A L+K + P E++E S+++ +
Sbjct: 81 PRPGFHQLEAEVELLDRIGEA--LEK--LEKPKEVEVEEPEKISVDEFKK 126
>gnl|CDD|222673 pfam14315, DUF4380, Domain of unknown function (DUF4380). This
family of proteins is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 288 and 372 amino acids in length. There are two
completely conserved residues (G and E) that may be
functionally important.
Length = 274
Score = 29.2 bits (66), Expect = 1.5
Identities = 21/107 (19%), Positives = 31/107 (28%), Gaps = 21/107 (19%)
Query: 35 QDLWLKPQAVTTVSFPDCVKWLTVEFDPKCGTCQAEDTLQLFIPMRPENP---------S 85
LW+ P+ PD +D + L P P+
Sbjct: 62 HRLWIGPENPPRTYPPDPQLDN-----GPYTVSIDKDGVVLTSPPSPKTGLQLTRTITLD 116
Query: 86 ESSSYIAVTHKLSNGYTQWPQ------YTIVLPGNEVIFTLETASDY 126
+ +TH L+N P T + PG V L A D+
Sbjct: 117 PGRPELHITHTLTN-IGLTPVEWALWFLTRLAPGGRVFVPLAPAGDH 162
>gnl|CDD|226516 COG4029, COG4029, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 142
Score = 28.2 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 150 PGEGLHRLESELSFLGAMCAASLLKKDLILPPTGEELDEE 189
P G H+LE E+ L + A L D EE+ E
Sbjct: 89 PRPGFHQLEREVELLDLIGEA-LDALD-----KPEEVALE 122
>gnl|CDD|235238 PRK04171, PRK04171, ribosome biogenesis protein; Provisional.
Length = 222
Score = 28.7 bits (65), Expect = 2.4
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 163 FLGAMCAASLLKKDLILPPTGEELDEEWGESLEDLMENVYSKHSQLLSK 211
F+G M LLK+ + PP GE L E +SLE+L+E + LLS+
Sbjct: 109 FVGLM--EQLLKEGRV-PPNGEPLLEIENKSLEELLEEIGPDRIILLSE 154
>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of
proteins similar to the TRX-related human transmembrane
protein, TMX. TMX is a type I integral membrane protein;
the N-terminal redox active TRX domain is present in the
endoplasmic reticulum (ER) lumen while the C-terminus is
oriented towards the cytoplasm. It is expressed in many
cell types and its active site motif (CPAC) is unique.
In vitro, TMX reduces interchain disulfides of insulin
and renatures inactive RNase containing incorrect
disulfide bonds. The C. elegans homolog, DPY-11, is
expressed only in the hypodermis and resides in the
cytoplasm. It is required for body and sensory organ
morphogeneis. Another uncharacterized TRX-related
transmembrane protein, human TMX4, is included in the
alignment. The active site sequence of TMX4 is CPSC.
Length = 101
Score = 27.0 bits (60), Expect = 3.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 179 LPPTGEELDEEWGESLEDLMENVYSKHSQLLSKGFALSSIPTIHQALDGV 228
L P EE +W + L + V LS F ++++PTI+ A DGV
Sbjct: 34 LQPEWEEF-ADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV 82
>gnl|CDD|173941 cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD)
catalyzes the reduction of phosphonoacetaldehyde (PnAA)
to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate
dehydrogenase (HEPD) catalyzes the reduction of
phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate
(HEP) with either NADH or NADPH as a cofactor. NADH is
the preferred cofactor. PnAA is a biosynthetic
intermediate for several phosphonates such as the
antibiotic fosfomycin, phosphinothricin tripeptide
(PTT), and 2-aminoethylphosphonate (AEP). This enzyme is
named PhpC in PTT biosynthesis pathway in Streptomyces
hygroscopicus and S. viridochromogenes. Members of this
family are only found in bacteria.
Length = 367
Score = 27.6 bits (62), Expect = 5.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 198 MENVYSKHSQLLSKGFALSSIPTIHQALDGVL 229
+E+ +SK+S S+ +A +I I + L +L
Sbjct: 193 IESYWSKNSTPESRAYARRAIRLILENLPPLL 224
>gnl|CDD|217076 pfam02511, Thy1, Thymidylate synthase complementing protein.
Thymidylate synthase complementing protein (Thy1)
complements the thymidine growth requirement of the
organisms in which it is found, but shows no homology to
thymidylate synthase.
Length = 189
Score = 27.2 bits (61), Expect = 5.3
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 178 ILPPTGEELD---EEWGESLEDLMENVYSKHSQLLSKGFA 214
+PP E D +E E E+ ME Y + +LL KG A
Sbjct: 91 YVPPELREQDEEAKELLEEFEEAMEEAYEAYEELLEKGIA 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.405
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,522,809
Number of extensions: 1030268
Number of successful extensions: 610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 8
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.8 bits)