RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15195
         (232 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 39/256 (15%), Positives = 70/256 (27%), Gaps = 89/256 (34%)

Query: 27  SGPTSLSVQDLWLKPQAVTTVSFPDCVKWLTVEFDPKCGTCQAEDTL-----QLFIPMRP 81
           SG T +++         V        + WL +        C + +T+     +L   + P
Sbjct: 161 SGKTWVALDVC--LSYKVQCK-MDFKIFWLNL------KNCNSPETVLEMLQKLLYQIDP 211

Query: 82  ---ENPSESSSYIAVTHKLSNG---YTQWPQYT---IVLPGNEVIFTLETASDYVKDDR- 131
                   SS+     H +        +   Y    +VL               V++ + 
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-------------LNVQNAKA 258

Query: 132 APSYGFKC--LVT-----------GYEWYY----NPGEGLHRLESE---LSFLG------ 165
             ++   C  L+T                +    +    L   E +   L +L       
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 166 --AMCAASLLKKDLILPPTGEELDEE---WGE---------------SLEDLMENVYSKH 205
              +   +  +  +I     E + +    W                 SL  L    Y K 
Sbjct: 319 PREVLTTNPRRLSII----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 206 SQLLSKGFALSS-IPT 220
              LS  F  S+ IPT
Sbjct: 375 FDRLSV-FPPSAHIPT 389


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 28.2 bits (62), Expect = 1.7
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 7/35 (20%)

Query: 184 EELDE-------EWGESLEDLMENVYSKHSQLLSK 211
           +ELD        EW E  +  +E    + S+ + K
Sbjct: 99  QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 3.6
 Identities = 18/148 (12%), Positives = 36/148 (24%), Gaps = 59/148 (39%)

Query: 51  DCVKWLTVEFDPKCGTCQAEDTLQLFIPMRPENPSES-SSYIAVTHKLSNGYTQWPQYTI 109
           + ++WL    +P        +T           P +     I ++  L  G  Q   Y +
Sbjct: 214 NILEWLE---NP-------SNT-----------PDKDYLLSIPISCPL-IGVIQLAHYVV 251

Query: 110 VLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYEWYYNPGEGLHRLESELSFLGAMCA 169
                                          + G+     PGE    L+        +  
Sbjct: 252 T----------------------------AKLLGF----TPGELRSYLKGATGHSQGLVT 279

Query: 170 ASLLKKDLILPPTGEELDEEWGESLEDL 197
           A  +        + E       +++  L
Sbjct: 280 AVAIA----ETDSWESFFVSVRKAITVL 303


>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold,
           electron transport; NMR {Escherichia coli} PDB: 2hnb_A
          Length = 147

 Score = 26.4 bits (59), Expect = 5.2
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 142 TGYEWYYNPGEGLHRLESELSFLGAMCAASLLKKDLILPPTGEELDEEWGESLEDLME 199
             Y+ +    + L      L   GA      LK +++     E+  EEW  S  +L++
Sbjct: 93  REYDTFCGAIDKLEAE---LKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLLK 147


>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
           {Galactomyces geotrichum} SCOP: c.69.1.17
          Length = 544

 Score = 27.0 bits (60), Expect = 5.9
 Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 5/42 (11%)

Query: 98  SNGYTQWPQYTIVLPGNEVIFTLETASDYVKDD--RAPSYGF 137
                QW QYT      + +  +    + ++ D  R      
Sbjct: 497 GTNLLQWDQYT---DEGKEMLEIHMTDNVMRTDDYRIEGISN 535


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 6.5
 Identities = 4/24 (16%), Positives = 12/24 (50%), Gaps = 7/24 (29%)

Query: 70 EDTLQLFIPMRPENPSESSSYIAV 93
          + +L+L+         +S+  +A+
Sbjct: 26 QASLKLYAD-------DSAPALAI 42


>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
           shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
           enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
          Length = 358

 Score = 26.3 bits (59), Expect = 9.9
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 20/86 (23%)

Query: 133 PSYG-FKCLVTGYEWYYNPGEGLHRLESELSFLGAMCA--------------ASLLKKDL 177
           P  G F    +   +++NP       E + + +G +                  + +K +
Sbjct: 68  PDIGMFTYDESTKLFWFNPSSFET--EGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLM 125

Query: 178 ILPPTG---EELDEEWGESLEDLMEN 200
               T     +      +SL+DL+E 
Sbjct: 126 GKKGTFRDLGDSHPVLYQSLKDLLEY 151


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,467,318
Number of extensions: 189897
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 17
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.9 bits)