RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15195
         (232 letters)



>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 146

 Score = 26.2 bits (57), Expect = 2.1
 Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 6/107 (5%)

Query: 94  THKLSNGYTQWPQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYEWYYNPGEG 153
             +         Q     P   V       S         ++       G   Y    + 
Sbjct: 44  ASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFA--VFSLGDTSYEFFCQS 101

Query: 154 LHRLESELSFLGAMCAASLLKKDLILPPTGEELDEEWGESLEDLMEN 200
               +S+L+ LG       +  D+      +    EW   + D +++
Sbjct: 102 GKDFDSKLAELGGERLLDRVDADV----EYQAAASEWRARVVDALKS 144


>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 128

 Score = 25.0 bits (54), Expect = 5.5
 Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 181 PTGEELDEEWGESLEDLMENVY 202
           P+ EE+ + W +S + LM +  
Sbjct: 1   PSPEEV-QSWAQSFDKLMHSPA 21


>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 138

 Score = 25.0 bits (54), Expect = 5.6
 Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 181 PTGEELDEEWGESLEDLMEN 200
           PT   + E W  +  +L+ +
Sbjct: 6   PTKMRV-ERWAFNFSELIRD 24


>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
           {Leishmania mexicana mexicana [TaxId: 44270]}
          Length = 143

 Score = 24.6 bits (53), Expect = 7.6
 Identities = 18/116 (15%), Positives = 29/116 (25%), Gaps = 14/116 (12%)

Query: 105 PQYTIVLPGNEVIFTLETASDYVKDDRAPSYGFKCLVTGYEWYYNPGEGLHRLESELSFL 164
            Q  IV  G+EV   ++ A     + R       C                 L + +  +
Sbjct: 19  LQLVIVASGSEVSLAVDAAKALSGELRVRVVSMPCQELFDAQPDT--YRQAVLPAGVPVV 76

Query: 165 GAMCAASLLKKDLILPPTGEELDEEWGESL--EDLM-------ENVYSKHSQLLSK 211
                 S   +       G      +G S     L        E V     +L  +
Sbjct: 77  SVEAYVSFGWEKYSHAHVG---MSGFGASAPAGVLYKKFGITVEEVVRTGRELAKR 129


>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 241

 Score = 24.8 bits (54), Expect = 9.6
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 177 LILPPTGEELDEEWGESLEDLMENVYSKHSQLLSK 211
            +   T  E   +  + LE  +  +      +L K
Sbjct: 135 GMGNLTLNEPFVKEKKELELSLAYLAKLDG-ILEK 168


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 859,787
Number of extensions: 38364
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 10
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.6 bits)