BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15197
(902 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QQW|A Chain A, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|B Chain B, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|C Chain C, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|D Chain D, Crystal Structure Of Human Erythrocyte Catalase
pdb|1F4J|A Chain A, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|B Chain B, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|C Chain C, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|D Chain D, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
Length = 527
Score = 549 bits (1414), Expect = e-156, Method: Compositional matrix adjust.
Identities = 254/391 (64%), Positives = 307/391 (78%), Gaps = 1/391 (0%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT +KA +F IGK+TP+A RFSTV GE GSADT RDPRGFA+KFYTEDGNWD
Sbjct: 85 FEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWD 144
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RDP F FIHSQKRNP THL+D D WDF SL PE+ HQV LFSDRG
Sbjct: 145 LVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRG 204
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IPDG RHM+GYGSHTFKLVN + E VYCKFH++TDQGIKN+S + A +L+ DPDY IRD
Sbjct: 205 IPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDYGIRD 264
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ IA G +PSWTFYIQVMTF +A+T+ +NPFD+TK+WP D+PL+PVG +VL++NP N
Sbjct: 265 LFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVN 324
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQ+AF+P+N+ PGIE +PDKMLQGRL +Y DTH HRLG N+ IPVNCPYR RVA
Sbjct: 325 YFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVA 384
Query: 811 NYQRDAPMAI-DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPR 869
NYQRD PM + DNQ GAPNYYPNSF PE P + +G+V+R+ T ++DN +Q R
Sbjct: 385 NYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVR 444
Query: 870 ILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
+ NVL++ R R+ NIA LK A FIQ
Sbjct: 445 AFYVNVLNEEQRKRLCENIAGHLKDAQIFIQ 475
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 84 EESSCEIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAK 143
+ ++ + V TT AGNPV + + T+GP GP+ ++D + D++ HF ER PERVVHAK
Sbjct: 18 QRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAK 77
Query: 144 GGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203
G GAFGYFE I K Y K+F G++ P V + G G +
Sbjct: 78 GAGAFGYFEVTHDITK-------------YSKAKVFEHIGKKTPIAVRFSTVAGESGSAD 124
Query: 204 VRKLPAG 210
+ P G
Sbjct: 125 TVRDPRG 131
>pdb|3NWL|A Chain A, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
pdb|3NWL|B Chain B, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
pdb|3NWL|C Chain C, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
pdb|3NWL|D Chain D, The Crystal Structure Of The P212121 Form Of Bovine Liver
Catalase Previously Characterized By Electron Microscopy
Length = 527
Score = 549 bits (1414), Expect = e-156, Method: Compositional matrix adjust.
Identities = 256/391 (65%), Positives = 305/391 (78%), Gaps = 1/391 (0%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT +KA +F IGK+TP+A RFSTV GE GSADT RDPRGFA+KFYTEDGNWD
Sbjct: 85 FEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWD 144
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RD F FIHSQKRNP THL+D D WDF SL PE+ HQV LFSDRG
Sbjct: 145 LVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRG 204
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IPDG RHM GYGSHTFKLVN D E VYCKFH++TDQGIKN+S + A +LA DPDY +RD
Sbjct: 205 IPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRD 264
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ IA GN+PSWT YIQVMTF EA+ + +NPFD+TK+WP D+PL+PVG +VL++NP N
Sbjct: 265 LFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVN 324
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQLAF+P+N+ PGIEP+PDKMLQGRL +Y DTH HRLG N+ QIPVNCPYR RVA
Sbjct: 325 YFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVA 384
Query: 811 NYQRDAPMA-IDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPR 869
NYQRD PM +DNQ GAPNYYPNSF PE P + +GDV+R+ + ++DN +Q R
Sbjct: 385 NYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVR 444
Query: 870 ILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
+ VL++ R R+ NIA LK A FIQ
Sbjct: 445 TFYLKVLNEEQRKRLCENIAGHLKDAQLFIQ 475
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 14/128 (10%)
Query: 84 EESSCEIP-VDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHA 142
E+ + + P V TT GNPV + T+GP GP+ ++D + D++ HF ER PERVVHA
Sbjct: 17 EQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHA 76
Query: 143 KGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
KG GAFGYFE I + Y K+F G+R P V + G G
Sbjct: 77 KGAGAFGYFEVTHDITR-------------YSKAKVFEHIGKRTPIAVRFSTVAGESGSA 123
Query: 203 EVRKLPAG 210
+ + P G
Sbjct: 124 DTVRDPRG 131
>pdb|1DGH|A Chain A, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGH|C Chain C, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGB|A Chain A, Human Erythrocyte Catalase
pdb|1DGB|B Chain B, Human Erythrocyte Catalase
pdb|1DGB|C Chain C, Human Erythrocyte Catalase
pdb|1DGB|D Chain D, Human Erythrocyte Catalase
Length = 498
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 254/391 (64%), Positives = 307/391 (78%), Gaps = 1/391 (0%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT +KA +F IGK+TP+A RFSTV GE GSADT RDPRGFA+KFYTEDGNWD
Sbjct: 82 FEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWD 141
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RDP F FIHSQKRNP THL+D D WDF SL PE+ HQV LFSDRG
Sbjct: 142 LVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRG 201
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IPDG RHM+GYGSHTFKLVN + E VYCKFH++TDQGIKN+S + A +L+ DPDY IRD
Sbjct: 202 IPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDYGIRD 261
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ IA G +PSWTFYIQVMTF +A+T+ +NPFD+TK+WP D+PL+PVG +VL++NP N
Sbjct: 262 LFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVN 321
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQ+AF+P+N+ PGIE +PDKMLQGRL +Y DTH HRLG N+ IPVNCPYR RVA
Sbjct: 322 YFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVA 381
Query: 811 NYQRDAPMAI-DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPR 869
NYQRD PM + DNQ GAPNYYPNSF PE P + +G+V+R+ T ++DN +Q R
Sbjct: 382 NYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVR 441
Query: 870 ILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
+ NVL++ R R+ NIA LK A FIQ
Sbjct: 442 AFYVNVLNEEQRKRLCENIAGHLKDAQIFIQ 472
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 84 EESSCEIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAK 143
+ ++ + V TT AGNPV + + T+GP GP+ ++D + D++ HF ER PERVVHAK
Sbjct: 15 QRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAK 74
Query: 144 GGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203
G GAFGYFE I K Y K+F G++ P V + G G +
Sbjct: 75 GAGAFGYFEVTHDITK-------------YSKAKVFEHIGKKTPIAVRFSTVAGESGSAD 121
Query: 204 VRKLPAG 210
+ P G
Sbjct: 122 TVRDPRG 128
>pdb|1DGH|B Chain B, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGH|D Chain D, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
Length = 498
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 254/391 (64%), Positives = 307/391 (78%), Gaps = 1/391 (0%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT +KA +F IGK+TP+A RFSTV GE GSADT RDPRGFA+KFYTEDGNWD
Sbjct: 82 FEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWD 141
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RDP F FIHSQKRNP THL+D D WDF SL PE+ HQV LFSDRG
Sbjct: 142 LVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRG 201
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IPDG RHM+GYGSHTFKLVN + E VYCKFH++TDQGIKN+S + A +L+ DPDY IRD
Sbjct: 202 IPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDYGIRD 261
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ IA G +PSWTFYIQVMTF +A+T+ +NPFD+TK+WP D+PL+PVG +VL++NP N
Sbjct: 262 LFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVN 321
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQ+AF+P+N+ PGIE +PDKMLQGRL +Y DTH HRLG N+ IPVNCPYR RVA
Sbjct: 322 YFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVA 381
Query: 811 NYQRDAPMAI-DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPR 869
NYQRD PM + DNQ GAPNYYPNSF PE P + +G+V+R+ T ++DN +Q R
Sbjct: 382 NYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVR 441
Query: 870 ILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
+ NVL++ R R+ NIA LK A FIQ
Sbjct: 442 AFYVNVLNEEQRKRLCENIAGHLKDAQIFIQ 472
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 84 EESSCEIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAK 143
+ ++ + V TT AGNPV + + T+GP GP+ ++D + D++ HF ER PERVV AK
Sbjct: 15 QRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVXAK 74
Query: 144 GGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203
G GAFGYFE I K Y K+F G++ P V + G G +
Sbjct: 75 GAGAFGYFEVTHDITK-------------YSKAKVFEHIGKKTPIAVRFSTVAGESGSAD 121
Query: 204 VRKLPAG 210
+ P G
Sbjct: 122 TVRDPRG 128
>pdb|1DGG|A Chain A, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|B Chain B, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|C Chain C, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|D Chain D, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGF|A Chain A, Human Erythrocyte Catalase
pdb|1DGF|B Chain B, Human Erythrocyte Catalase
pdb|1DGF|C Chain C, Human Erythrocyte Catalase
pdb|1DGF|D Chain D, Human Erythrocyte Catalase
Length = 497
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 254/391 (64%), Positives = 307/391 (78%), Gaps = 1/391 (0%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT +KA +F IGK+TP+A RFSTV GE GSADT RDPRGFA+KFYTEDGNWD
Sbjct: 81 FEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWD 140
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RDP F FIHSQKRNP THL+D D WDF SL PE+ HQV LFSDRG
Sbjct: 141 LVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRG 200
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IPDG RHM+GYGSHTFKLVN + E VYCKFH++TDQGIKN+S + A +L+ DPDY IRD
Sbjct: 201 IPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDYGIRD 260
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ IA G +PSWTFYIQVMTF +A+T+ +NPFD+TK+WP D+PL+PVG +VL++NP N
Sbjct: 261 LFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVN 320
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQ+AF+P+N+ PGIE +PDKMLQGRL +Y DTH HRLG N+ IPVNCPYR RVA
Sbjct: 321 YFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVA 380
Query: 811 NYQRDAPMAI-DNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPR 869
NYQRD PM + DNQ GAPNYYPNSF PE P + +G+V+R+ T ++DN +Q R
Sbjct: 381 NYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVR 440
Query: 870 ILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
+ NVL++ R R+ NIA LK A FIQ
Sbjct: 441 AFYVNVLNEEQRKRLCENIAGHLKDAQIFIQ 471
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 84 EESSCEIPVDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAK 143
+ ++ + V TT AGNPV + + T+GP GP+ ++D + D++ HF ER PERVVHAK
Sbjct: 14 QRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAK 73
Query: 144 GGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFE 203
G GAFGYFE I K Y K+F G++ P V + G G +
Sbjct: 74 GAGAFGYFEVTHDITK-------------YSKAKVFEHIGKKTPIAVRFSTVAGESGSAD 120
Query: 204 VRKLPAG 210
+ P G
Sbjct: 121 TVRDPRG 127
>pdb|7CAT|A Chain A, The Nadph Binding Site On Beef Liver Catalase
pdb|8CAT|A Chain A, The Nadph Binding Site On Beef Liver Catalase
pdb|8CAT|B Chain B, The Nadph Binding Site On Beef Liver Catalase
pdb|4BLC|A Chain A, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|B Chain B, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|C Chain C, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|4BLC|D Chain D, The Structure Of Orthorhombic Crystals Of Beef Liver
Catalase
pdb|1TGU|A Chain A, The Crystal Structure Of Bovine Liver Catalase Without
Nadph
pdb|1TGU|B Chain B, The Crystal Structure Of Bovine Liver Catalase Without
Nadph
pdb|1TGU|C Chain C, The Crystal Structure Of Bovine Liver Catalase Without
Nadph
pdb|1TGU|D Chain D, The Crystal Structure Of Bovine Liver Catalase Without
Nadph
pdb|1TH2|A Chain A, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH2|B Chain B, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH2|C Chain C, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH2|D Chain D, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With Azide
pdb|1TH3|A Chain A, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH3|B Chain B, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH3|C Chain C, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH3|D Chain D, Crystal Structure Of Nadph Depleted Bovine Live Catalase
Complexed With Cyanide
pdb|1TH4|A Chain A, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|1TH4|B Chain B, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|1TH4|C Chain C, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|1TH4|D Chain D, Crystal Structure Of Nadph Depleted Bovine Liver Catalase
Complexed With 3-Amino-1,2,4-Triazole
pdb|7CAT|B Chain B, The Nadph Binding Site On Beef Liver Catalase
Length = 506
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 256/391 (65%), Positives = 305/391 (78%), Gaps = 1/391 (0%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT +KA +F IGK+TP+A RFSTV GE GSADT RDPRGFA+KFYTEDGNWD
Sbjct: 84 FEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWD 143
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RD F FIHSQKRNP THL+D D WDF SL PE+ HQV LFSDRG
Sbjct: 144 LVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRG 203
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IPDG RHM GYGSHTFKLVN D E VYCKFH++TDQGIKN+S + A +LA DPDY +RD
Sbjct: 204 IPDGHRHMDGYGSHTFKLVNADGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRD 263
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ IA GN+PSWT YIQVMTF EA+ + +NPFD+TK+WP D+PL+PVG +VL++NP N
Sbjct: 264 LFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVN 323
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQLAF+P+N+ PGIEP+PDKMLQGRL +Y DTH HRLG N+ QIPVNCPYR RVA
Sbjct: 324 YFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVA 383
Query: 811 NYQRDAPMA-IDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPR 869
NYQRD PM +DNQ GAPNYYPNSF PE P + +GDV+R+ + ++DN +Q R
Sbjct: 384 NYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVR 443
Query: 870 ILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
+ VL++ R R+ NIA LK A FIQ
Sbjct: 444 TFYLKVLNEEQRKRLCENIAGHLKDAQLFIQ 474
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 14/128 (10%)
Query: 84 EESSCEIP-VDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHA 142
E+ + + P V TT GNPV + T+GP GP+ ++D + D++ HF ER PERVVHA
Sbjct: 16 EQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHA 75
Query: 143 KGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
KG GAFGYFE I + Y K+F G+R P V + G G
Sbjct: 76 KGAGAFGYFEVTHDITR-------------YSKAKVFEHIGKRTPIAVRFSTVAGESGSA 122
Query: 203 EVRKLPAG 210
+ + P G
Sbjct: 123 DTVRDPRG 130
>pdb|3RGP|A Chain A, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGP|B Chain B, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGP|C Chain C, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGP|D Chain D, Structural And Kinetic Analysis Of The Beef Liver Catalase
Complexed With Nitric Oxide
pdb|3RGS|A Chain A, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RGS|B Chain B, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RGS|C Chain C, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RGS|D Chain D, Structural And Kinetic Analysis Of The Beef Liver Catalase
With The Ammonia As A Ligand
pdb|3RE8|A Chain A, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
pdb|3RE8|B Chain B, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
pdb|3RE8|C Chain C, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
pdb|3RE8|D Chain D, Structural And Kinetic Analysis Of The Beef Liver Catalase
Interacting With Nitric Oxide
Length = 499
Score = 546 bits (1407), Expect = e-155, Method: Compositional matrix adjust.
Identities = 255/391 (65%), Positives = 306/391 (78%), Gaps = 1/391 (0%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT +KA +F IGK+TP+A RFSTV GE GSADT RDPRGFA+KFYTEDGNWD
Sbjct: 82 FEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWD 141
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RD F FIHSQKRNP THL+D D WDF SL PE+ HQV LFSDRG
Sbjct: 142 LVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRG 201
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IPDG RHM+GYGSHTFKLVN + E VYCKFH++TDQGIKN+S + A +LA DPDY +RD
Sbjct: 202 IPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLAHEDPDYGLRD 261
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ IA GN+PSWT YIQVMTF EA+ + +NPFD+TK+WP D+PL+PVG +VL++NP N
Sbjct: 262 LFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVN 321
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQLAF+P+N+ PGIEP+PDKMLQGRL +Y DTH HRLG N+ QIPVNCPYR RVA
Sbjct: 322 YFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVNCPYRARVA 381
Query: 811 NYQRDAPMA-IDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPR 869
NYQRD PM +DNQ GAPNYYPNSF PE P + +GDV+R+ + ++DN +Q R
Sbjct: 382 NYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALEHRTHFSGDVQRFNSANDDNVTQVR 441
Query: 870 ILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
+ VL++ R R+ NIA LK A FIQ
Sbjct: 442 TFYLKVLNEEQRKRLCENIAGHLKDAQLFIQ 472
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 14/128 (10%)
Query: 84 EESSCEIP-VDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHA 142
E+ + + P V TT GNPV + T+GP GP+ ++D + D++ HF ER PERVVHA
Sbjct: 14 EQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHA 73
Query: 143 KGGGAFGYFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
KG GAFGYFE I + Y K+F G+R P V + G G
Sbjct: 74 KGAGAFGYFEVTHDITR-------------YSKAKVFEHIGKRTPIAVRFSTVAGESGSA 120
Query: 203 EVRKLPAG 210
+ + P G
Sbjct: 121 DTVRDPRG 128
>pdb|1SI8|A Chain A, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|B Chain B, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|C Chain C, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|D Chain D, Crystal Structure Of E. Faecalis Catalase
Length = 484
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 266/383 (69%), Gaps = 4/383 (1%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ V+ + TKA SE+GK+TP+ ARFSTV GE GS+DT RDPRGFALKFYT++GN+D
Sbjct: 64 FKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEGNYD 123
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RD +F FIHSQKRNP THL+ +A WDF S PE+ HQV IL SDRG
Sbjct: 124 LVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRG 183
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IP FRHMHG+GSHTFK VN E + K+HF+T+QGIKN+ Q A ++A +PD+ I D
Sbjct: 184 IPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFHIED 243
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ I FPSWT +Q++ + +A T + FDVTK Q ++PL+ VG M L++NP N
Sbjct: 244 LHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPEN 303
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQ+ F+P N +PGIE +PDK+LQGRL +Y D H HR+GAN +Q+P+N + V
Sbjct: 304 YFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQA-KAPVN 362
Query: 811 NYQRDAPMAIDNQNGAPNYYPNSF-KGPEPTPRGAWSTYNATGDVKRYKTEDEDNFSQPR 869
NYQ+D M +N N NY PNS+ + P+ P S++ G+V Y + ++D+F+Q
Sbjct: 363 NYQKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNY-SYNQDHFTQAN 421
Query: 870 ILWSNVLDDAARDRMTTNIASVL 892
L+ N+L ++ + NIA+ L
Sbjct: 422 ALY-NLLPSEEKENLINNIAASL 443
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 42/67 (62%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACL 219
T G GPV ++D + L+KL HF+ ER PERVVHAKG GA G F+V + A K +F
Sbjct: 22 TAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFKVSQSMAQYTKADFLSE 81
Query: 220 VMRIVPL 226
V + PL
Sbjct: 82 VGKETPL 88
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TTS G+PV T G GPV ++D + L+KL HF ER PERVVHAKG GA G F+
Sbjct: 7 TTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFKV 66
Query: 154 RETIIK 159
+++ +
Sbjct: 67 SQSMAQ 72
>pdb|1H6N|A Chain A, Formation Of A Tyrosyl Radical Intermediate In Proteus
Mirabilis Catalase By Directed Mutagenesis And
Consequences For Nucleotide Reactivity
Length = 484
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/400 (50%), Positives = 261/400 (65%), Gaps = 20/400 (5%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT T+A IFSE+GK+T + ARFSTV GERG+AD RD RGFALKFYTE+GNWD
Sbjct: 64 FTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWD 123
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
+VGNNTP+F++RDP +F H KR+P T++R+ WDF S LPE+ HQ+ I SDRG
Sbjct: 124 MVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRG 183
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
+P +R +HGYGSHT+ +NKDNE + KFHFR QGIKN+ A L D + S RD
Sbjct: 184 LPLSYRFVHGYGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRD 243
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ I +G++P W IQ+M +EA T +NPFD+TK+WP +D+PL+ VG+ L++NP N
Sbjct: 244 LFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDN 303
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y++++EQ AF+P N++PGI +PDKMLQGRL SY D H +RLG N +QIPVN P +
Sbjct: 304 YFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAP-KCPFH 362
Query: 811 NYQRDAPMAIDNQNG-APNYYPNS---------FKGPEPTPRGAWSTYNATGDVKRYKTE 860
NY RD M +D +G Y PNS FK P + GA +N E
Sbjct: 363 NYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWN--------HRE 414
Query: 861 DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
DED FSQPR L+ +L D RM IA L A+ Q
Sbjct: 415 DEDYFSQPRALYE-LLSDDEHQRMFARIAGELSQASKETQ 453
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+AG PV + T GP GP+ L+D ++L+KL HF E PER HAKG GAFG F
Sbjct: 7 TTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRXHAKGSGAFGTFTV 66
Query: 154 RETIIK 159
I K
Sbjct: 67 THDITK 72
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 153 DRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
D +I T GP GP+ L+D ++L+KL HF E PER HAKG GAFG F V
Sbjct: 16 DNNNVI-TAGPRGPMLLQDVWFLEKLAHFDREVIPERRXHAKGSGAFGTFTV 66
>pdb|1M85|A Chain A, Structure Of Proteus Mirabilis Catalase For The Native
Form
pdb|1MQF|A Chain A, Compound I From Proteus Mirabilis Catalase
pdb|1NM0|A Chain A, Proteus Mirabilis Catalase In Complex With Formiate
pdb|2CAG|A Chain A, Catalase Compound Ii
pdb|2CAH|A Chain A, Structure Of Proteus Mirabilis Pr Catalase For The Native
Form (e- Fe(iii)) Complexed With Nadph
Length = 484
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/400 (50%), Positives = 261/400 (65%), Gaps = 20/400 (5%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT T+A IFSE+GK+T + ARFSTV GERG+AD RD RGFALKFYTE+GNWD
Sbjct: 64 FTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWD 123
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
+VGNNTP+F++RDP +F H KR+P T++R+ WDF S LPE+ HQ+ I SDRG
Sbjct: 124 MVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRG 183
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
+P +R +HG+GSHT+ +NKDNE + KFHFR QGIKN+ A L D + S RD
Sbjct: 184 LPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRD 243
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ I +G++P W IQ+M +EA T +NPFD+TK+WP +D+PL+ VG+ L++NP N
Sbjct: 244 LFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDN 303
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y++++EQ AF+P N++PGI +PDKMLQGRL SY D H +RLG N +QIPVN P +
Sbjct: 304 YFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAP-KCPFH 362
Query: 811 NYQRDAPMAIDNQNG-APNYYPNS---------FKGPEPTPRGAWSTYNATGDVKRYKTE 860
NY RD M +D +G Y PNS FK P + GA +N E
Sbjct: 363 NYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWN--------HRE 414
Query: 861 DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
DED FSQPR L+ +L D RM IA L A+ Q
Sbjct: 415 DEDYFSQPRALYE-LLSDDEHQRMFARIAGELSQASKETQ 453
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+AG PV + T GP GP+ L+D ++L+KL HF E PER HAKG GAFG F
Sbjct: 7 TTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRXHAKGSGAFGTFTV 66
Query: 154 RETIIK 159
I K
Sbjct: 67 THDITK 72
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 153 DRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
D +I T GP GP+ L+D ++L+KL HF E PER HAKG GAFG F V
Sbjct: 16 DNNNVI-TAGPRGPMLLQDVWFLEKLAHFDREVIPERRXHAKGSGAFGTFTV 66
>pdb|1E93|A Chain A, High Resolution Structure And Biochemical Properties Of A
Recombinant Catalase Depleted In Iron
Length = 484
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/400 (50%), Positives = 261/400 (65%), Gaps = 20/400 (5%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT T+A IFSE+GK+T + ARFSTV GERG+AD RD RGFALKFYTE+GNWD
Sbjct: 64 FTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWD 123
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
+VGNNTP+F++RDP +F H KR+P T++R+ WDF S LPE+ HQ+ I SDRG
Sbjct: 124 MVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRG 183
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
+P +R +HG+GSHT+ +NKDNE + KFHFR QGIKN+ A L D + S RD
Sbjct: 184 LPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRD 243
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ I +G++P W IQ+M +EA T +NPFD+TK+WP +D+PL+ VG+ L++NP N
Sbjct: 244 LFEAIKRGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDN 303
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y++++EQ AF+P N++PGI +PDKMLQGRL SY D H +RLG N +QIPVN P +
Sbjct: 304 YFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAP-KCPFH 362
Query: 811 NYQRDAPMAIDNQNG-APNYYPNS---------FKGPEPTPRGAWSTYNATGDVKRYKTE 860
NY RD M +D +G Y PNS FK P + GA +N E
Sbjct: 363 NYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWN--------HRE 414
Query: 861 DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
DED FSQPR L+ +L D RM IA L A+ Q
Sbjct: 415 DEDYFSQPRALYE-LLSDDEHQRMFARIAGELSQASKETQ 453
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+AG PV + T GP GP+ L+D ++L+KL HF E PER HAKG GAFG F
Sbjct: 7 TTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRXHAKGSGAFGTFTV 66
Query: 154 RETIIK 159
I K
Sbjct: 67 THDITK 72
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 153 DRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
D +I T GP GP+ L+D ++L+KL HF E PER HAKG GAFG F V
Sbjct: 16 DNNNVI-TAGPRGPMLLQDVWFLEKLAHFDREVIPERRXHAKGSGAFGTFTV 66
>pdb|3HB6|A Chain A, Inactive Mutant H54f Of Proteus Mirabilis Catalase
Length = 484
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/400 (50%), Positives = 261/400 (65%), Gaps = 20/400 (5%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT T+A IFSE+GK+T + ARFSTV GERG+AD RD RGFALKFYTE+GNWD
Sbjct: 64 FTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWD 123
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
+VGNNTP+F++RDP +F H KR+P T++R+ WDF S LPE+ HQ+ I SDRG
Sbjct: 124 MVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRG 183
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
+P +R +HG+GSHT+ +NKDNE + KFHFR QGIKN+ A L D + S RD
Sbjct: 184 LPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRD 243
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ I +G++P W IQ+M +EA T +NPFD+TK+WP +D+PL+ VG+ L++NP N
Sbjct: 244 LFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDN 303
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y++++EQ AF+P N++PGI +PDKMLQGRL SY D H +RLG N +QIPVN P +
Sbjct: 304 YFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAP-KCPFH 362
Query: 811 NYQRDAPMAIDNQNG-APNYYPNS---------FKGPEPTPRGAWSTYNATGDVKRYKTE 860
NY RD M +D +G Y PNS FK P + GA +N E
Sbjct: 363 NYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWN--------HRE 414
Query: 861 DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
DED FSQPR L+ +L D RM IA L A+ Q
Sbjct: 415 DEDYFSQPRALYE-LLSDDEHQRMFARIAGELSQASKETQ 453
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 40/66 (60%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+AG PV + T GP GP+ L+D ++L+KL HF E PER + AKG GAFG F
Sbjct: 7 TTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRMFAKGSGAFGTFTV 66
Query: 154 RETIIK 159
I K
Sbjct: 67 THDITK 72
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 153 DRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
D +I T GP GP+ L+D ++L+KL HF E PER + AKG GAFG F V
Sbjct: 16 DNNNVI-TAGPRGPMLLQDVWFLEKLAHFDREVIPERRMFAKGSGAFGTFTV 66
>pdb|1H7K|A Chain A, Formation Of A Tyrosyl Radical Intermediate In Proteus
Mirabilis Catalase By Directed Mutagenesis And
Consequences For Nucleotide Reactivity
Length = 483
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/400 (49%), Positives = 261/400 (65%), Gaps = 20/400 (5%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT T+A IFSE+GK+T + ARFSTV GERG+AD RD RGFALKFYTE+GNWD
Sbjct: 63 FTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWD 122
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
+VGNNTP+F++RDP +F H KR+P T++R+ WDF S LPE+ HQ+ I SDRG
Sbjct: 123 MVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRG 182
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
+P +R +HG+GSHT+ +NKDNE + KFH+R QGIKN+ A L D + S RD
Sbjct: 183 LPLSYRFVHGFGSHTYSFINKDNERFWVKFHYRCQQGIKNLMDDEAEALVGKDRESSQRD 242
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ I +G++P W IQ+M +EA T +NPFD+TK+WP +D+PL+ VG+ L++NP N
Sbjct: 243 LFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDN 302
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y++++EQ AF+P N++PGI +PDKMLQGRL SY D H +RLG N +QIPVN P +
Sbjct: 303 YFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAP-KCPFH 361
Query: 811 NYQRDAPMAIDNQNG-APNYYPNS---------FKGPEPTPRGAWSTYNATGDVKRYKTE 860
NY RD M +D +G Y PNS FK P + GA +N E
Sbjct: 362 NYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWN--------HRE 413
Query: 861 DEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
DED FSQPR L+ +L D RM IA L A+ Q
Sbjct: 414 DEDYFSQPRALYE-LLSDDEHQRMFARIAGELSQASKETQ 452
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+AG PV + T GP GP+ L+D ++L+KL HF E PER HAKG GAFG F
Sbjct: 6 TTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRXHAKGSGAFGTFTV 65
Query: 154 RETIIK 159
I K
Sbjct: 66 THDITK 71
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 153 DRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
D +I T GP GP+ L+D ++L+KL HF E PER HAKG GAFG F V
Sbjct: 15 DNNNVI-TAGPRGPMLLQDVWFLEKLAHFDREVIPERRXHAKGSGAFGTFTV 65
>pdb|2XQ1|A Chain A, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|B Chain B, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|C Chain C, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|D Chain D, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|E Chain E, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|F Chain F, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|G Chain G, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|H Chain H, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|I Chain I, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|J Chain J, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|K Chain K, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|L Chain L, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|M Chain M, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|N Chain N, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|O Chain O, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|P Chain P, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
Length = 509
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/399 (48%), Positives = 260/399 (65%), Gaps = 10/399 (2%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VT DIT + A +GK+T + RFSTV GE+GSADT RDPRGFA KFYTEDGN D
Sbjct: 77 FEVTDDITDVCSAKFLDTVGKKTRIFTRFSTVGGEKGSADTARDPRGFATKFYTEDGNLD 136
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LV NNTPIFF+RDP +F HFIH+QKRNP T+L+D + FWD+++ E+ HQVM LFS+RG
Sbjct: 137 LVYNNTPIFFIRDPIKFPHFIHTQKRNPATNLKDPNMFWDYLTANDESLHQVMYLFSNRG 196
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
P +R M+GY HT+K N E VY + HF +QG+ N+ + A +LA DPD+S RD
Sbjct: 197 TPASYRTMNGYSGHTYKWYNSKGEWVYVQVHFIANQGVHNLLDEEAGRLAGEDPDHSTRD 256
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L++ I KG++PSW YIQ MT E++K ++ FD+TK+WP DFPL G L++NP N
Sbjct: 257 LWEAIEKGDYPSWECYIQTMTLEQSKKLPFSVFDLTKVWPHKDFPLRHFGRFTLNENPKN 316
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
YYAE EQ+AF+P++ +PG+EP+ D +LQ RL SY DTH HRLG N++QIPVNCP +
Sbjct: 317 YYAETEQIAFSPSHTVPGMEPSNDPVLQSRLFSYPDTHRHRLGPNYHQIPVNCPLKSGSF 376
Query: 811 N-YQRDAPMAID-NQNGAPNYYPNSFKGP-----EPTPRGAWSTYNATGDVKRYKTEDED 863
N RD PM +D N G PN Y N++ P P G TG+V Y E D
Sbjct: 377 NPINRDGPMCVDGNLGGTPN-YANAYNCPIQYAVSPKASGNKPDEKYTGEVVPYHWEHTD 435
Query: 864 -NFSQPRILWSNV-LDDAARDRMTTNIASVLKLAAPFIQ 900
++ QP++ W + ++ + N+A+ + A FIQ
Sbjct: 436 YDYFQPKMFWKVLGRTPGEQESLVKNVANHVSAADEFIQ 474
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 91 PVDTTSAGNPVDS----------ETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVV 140
PV TTS G PV T K P GP+ L+D +D L HF ER PERVV
Sbjct: 7 PVFTTSQGCPVSDPFTTQRIPLDSTGYKYAPPIGPLLLQDFKLIDTLSHFDRERIPERVV 66
Query: 141 HAKGGGAFGYFEDRETI 157
HAKG GA+G FE + I
Sbjct: 67 HAKGAGAYGVFEVTDDI 83
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%)
Query: 156 TIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIE 215
T K P GP+ L+D +D L HF ER PERVVHAKG GA+G FEV V +
Sbjct: 31 TGYKYAPPIGPLLLQDFKLIDTLSHFDRERIPERVVHAKGAGAYGVFEVTDDITDVCSAK 90
Query: 216 F 216
F
Sbjct: 91 F 91
>pdb|2ISA|A Chain A, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|B Chain B, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|C Chain C, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|D Chain D, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|E Chain E, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|F Chain F, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|G Chain G, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|H Chain H, Crystal Structure Of Vibrio Salmonicida Catalase
Length = 483
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/371 (51%), Positives = 241/371 (64%), Gaps = 17/371 (4%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VTHDIT TKA IFS+IGK+T + ARFSTV GERG+AD RD RGF+LKFYTE+GNWD
Sbjct: 63 FTVTHDITKYTKAKIFSDIGKKTDMFARFSTVAGERGAADAERDIRGFSLKFYTEEGNWD 122
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
L GNNTP+FF+RDP +F H+ KR+P T++R WDF + LPE HQV I+ SDRG
Sbjct: 123 LAGNNTPVFFLRDPLKFPDLNHAVKRDPRTNMRSAKNNWDFWTSLPEALHQVTIVMSDRG 182
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IP +RHMHG+GSHTF +N DNE + KFHF + QGIKN+S A +L D + RD
Sbjct: 183 IPATYRHMHGFGSHTFSFINSDNERYWVKFHFVSQQGIKNLSDAEAGELVGNDRESHQRD 242
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L D+I +FP WT +Q+M +A T +NPFD+TK+WP D+PL+ VG L++NP N
Sbjct: 243 LLDSIDNQDFPKWTLKVQIMPEADAATVPYNPFDLTKVWPHKDYPLIEVGEFELNRNPQN 302
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQ AFNP N++PGI +PDKMLQGRL +Y D +RLG N IPVN P R V
Sbjct: 303 YFAEVEQAAFNPANVVPGISFSPDKMLQGRLFAYGDAQRYRLGVNHQHIPVNAP-RCPVH 361
Query: 811 NYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWST--------YNATGDVKRY-KTED 861
+Y RD M +D G S G EP +G W+ N G + ED
Sbjct: 362 SYHRDGAMRVDGNFG-------STLGYEPNDQGQWAEQPDFSEPPLNLDGAAAHWDHRED 414
Query: 862 EDNFSQPRILW 872
ED FSQP L+
Sbjct: 415 EDYFSQPGDLF 425
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+AG PV ++T G GP L+D ++L+KL HF E PER HAKG GA+G F
Sbjct: 6 TTAAGCPVAHNQNVQTAGKRGPQLLQDVWFLEKLAHFDREVIPERRXHAKGSGAYGTFTV 65
Query: 154 RETIIK 159
I K
Sbjct: 66 THDITK 71
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 158 IKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
++T G GP L+D ++L+KL HF E PER HAKG GA+G F V
Sbjct: 19 VQTAGKRGPQLLQDVWFLEKLAHFDREVIPERRXHAKGSGAYGTFTV 65
>pdb|1QWL|A Chain A, Structure Of Helicobacter Pylori Catalase
pdb|1QWL|B Chain B, Structure Of Helicobacter Pylori Catalase
pdb|1QWM|A Chain A, Structure Of Helicobacter Pylori Catalase With Formic Acid
Bound
pdb|1QWM|B Chain B, Structure Of Helicobacter Pylori Catalase With Formic Acid
Bound
Length = 505
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/389 (49%), Positives = 255/389 (65%), Gaps = 9/389 (2%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VT DIT TKA IFS++GK+T RFSTV GERGSAD RDPRGFA+K+YTE+GNWD
Sbjct: 66 FTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWD 125
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTP+FF+RD +F FIH+QKR+P T+L + D WDF S +PE+ +QV + SDRG
Sbjct: 126 LVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQVTWVMSDRG 185
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IP FRHM G+GSHTF L+N E + KFHF T QG+K+++ + A ++ DPD + RD
Sbjct: 186 IPKSFRHMDGFGSHTFSLINAKGERFWVKFHFHTMQGVKHLTNEEAAEIRKHDPDSNQRD 245
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L+D IA+G++P W IQVM E+AK YR++PFDVTKIW D+PL+ VG + L+KNP N
Sbjct: 246 LFDAIARGDYPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYTQDYPLMEVGIVELNKNPEN 305
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQ AF P N++PGI +PD+MLQGRL SY DTH +RLG N+ QIPVN P R
Sbjct: 306 YFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKP-RCPFH 364
Query: 811 NYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKR-------YKTEDED 863
+ RD M NY P+S G + +N K Y+ +D D
Sbjct: 365 SSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSD 424
Query: 864 NFSQPRILWSNVLDDAARDRMTTNIASVL 892
++QP + ++ D ++R+ I L
Sbjct: 425 YYTQPGDYYRSLPAD-EKERLHDTIGESL 452
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G PV + + T GP GPV L+ T++L+KL F ER PERVVHAKG GA+G F
Sbjct: 9 TTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTF-- 66
Query: 154 RETIIKTIGPHGPVPL-----EDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
T+ K I + + + T + +GER V G A Y+
Sbjct: 67 --TVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYY 118
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 147 AFG--YFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
AFG ++D I T GP GPV L+ T++L+KL F ER PERVVHAKG GA+G F V
Sbjct: 11 AFGAPVWDDNNVI--TAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTV 68
Query: 205 RK 206
K
Sbjct: 69 TK 70
>pdb|2A9E|A Chain A, Helicobacter Pylori Catalase Compound I
pdb|2A9E|B Chain B, Helicobacter Pylori Catalase Compound I
pdb|2IQF|A Chain A, Crystal Structure Of Helicobacter Pylori Catalase Compound
I
pdb|2IQF|B Chain B, Crystal Structure Of Helicobacter Pylori Catalase Compound
I
Length = 505
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/389 (49%), Positives = 253/389 (65%), Gaps = 9/389 (2%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VT DIT TKA IFS++GK+T RFSTV GERGSAD RDPRGFA+K+YTE+GNWD
Sbjct: 66 FTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWD 125
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTP+FF+RD +F FIH+QKR+P T+L + D WDF S +PE+ +QV + SDRG
Sbjct: 126 LVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDXVWDFWSNVPESLYQVTWVXSDRG 185
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IP FRHM G+GSHTF L+N E + KFHF T QG+K+++ + A ++ DPD + RD
Sbjct: 186 IPKSFRHMDGFGSHTFSLINAKGERFWVKFHFHTMQGVKHLTNEEAAEIRKHDPDSNQRD 245
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L+D IA+G++P W IQVM E+AK YR++PFDVTKIW D+PL VG + L+KNP N
Sbjct: 246 LFDAIARGDYPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYTQDYPLXEVGIVELNKNPEN 305
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE+EQ AF P N++PGI +PD+MLQGRL SY DTH +RLG N+ QIPVN P R
Sbjct: 306 YFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKP-RCPFH 364
Query: 811 NYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNATGDVKR-------YKTEDED 863
+ RD NY P+S G + +N K Y+ +D D
Sbjct: 365 SSSRDGYXQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSD 424
Query: 864 NFSQPRILWSNVLDDAARDRMTTNIASVL 892
++QP + ++ D ++R+ I L
Sbjct: 425 YYTQPGDYYRSLPAD-EKERLHDTIGESL 452
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G PV + + T GP GPV L+ T++L+KL F ER PERVVHAKG GA+G F
Sbjct: 9 TTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTF-- 66
Query: 154 RETIIKTIGPHGPVPLEDTY--YLDKLFHFS---GERNPERVVHAKGGGAFGYF 202
T+ K I + + + F FS GER V G A Y+
Sbjct: 67 --TVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYY 118
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 147 AFG--YFEDRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
AFG ++D I T GP GPV L+ T++L+KL F ER PERVVHAKG GA+G F V
Sbjct: 11 AFGAPVWDDNNVI--TAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTV 68
Query: 205 RK 206
K
Sbjct: 69 TK 70
>pdb|1A4E|A Chain A, Catalase A From Saccharomyces Cerevisiae
pdb|1A4E|B Chain B, Catalase A From Saccharomyces Cerevisiae
pdb|1A4E|C Chain C, Catalase A From Saccharomyces Cerevisiae
pdb|1A4E|D Chain D, Catalase A From Saccharomyces Cerevisiae
Length = 488
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/327 (54%), Positives = 233/327 (71%), Gaps = 6/327 (1%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VT DIT + +A+FS+IGK+T RFSTV G++GSADT RDPRGFA KFYTE+GN D
Sbjct: 66 FEVTDDITDICGSAMFSKIGKRTKCLTRFSTVGGDKGSADTVRDPRGFATKFYTEEGNLD 125
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETT---HQVMILFS 627
V NNTP+FF+RDP +F HFIH+QKRNP T+LRD D FWDF++ PE HQVMILFS
Sbjct: 126 WVYNNTPVFFIRDPSKFPHFIHTQKRNPQTNLRDADMFWDFLTT-PENQVAIHQVMILFS 184
Query: 628 DRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYS 687
DRG P +R MHGY HT+K NK+ + Y + H +TDQGIKN++ + ATK+A ++PDY
Sbjct: 185 DRGTPANYRSMHGYSGHTYKWSNKNGDWHYVQVHIKTDQGIKNLTIEEATKIAGSNPDYC 244
Query: 688 IRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKN 747
+DL++ I GN+PSWT YIQ MT +AK ++ FD+TK+WPQ FPL VG +VL++N
Sbjct: 245 QQDLFEAIQNGNYPSWTVYIQTMTERDAKKLPFSVFDLTKVWPQGQFPLRRVGKIVLNEN 304
Query: 748 PGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRV 807
P N++A++EQ AF P+ +P E + D +LQ RL SY D H +RLG NF+QIPVNCPY
Sbjct: 305 PLNFFAQVEQAAFAPSTTVPYQEASADPVLQARLFSYADAHRYRLGPNFHQIPVNCPYAS 364
Query: 808 RVANYQ-RDAPMAIDNQNGA-PNYYPN 832
+ N RD PM ++ G+ P Y N
Sbjct: 365 KFFNPAIRDGPMNVNGNFGSEPTYLAN 391
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%)
Query: 92 VDTTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYF 151
V T S GNP++ + + IG HGP+ L+D +D L HF E P+R HA G GAFGYF
Sbjct: 7 VVTNSTGNPINEPFVTQRIGEHGPLLLQDYNLIDSLAHFNRENIPQRNPHAHGSGAFGYF 66
Query: 152 EDRETIIKTIG 162
E + I G
Sbjct: 67 EVTDDITDICG 77
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 157 IIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
+ + IG HGP+ L+D +D L HF+ E P+R HA G GAFGYFEV
Sbjct: 21 VTQRIGEHGPLLLQDYNLIDSLAHFNRENIPQRNPHAHGSGAFGYFEV 68
>pdb|1HBZ|A Chain A, Catalase From Micrococcus Lysodeikticu
Length = 498
Score = 340 bits (871), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 176/387 (45%), Positives = 236/387 (60%), Gaps = 6/387 (1%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VT D++ TKA +F + G +T RFSTV GE GS DT RD RGFAL+FYTE+GN+D
Sbjct: 66 FEVTEDVSKYTKALVF-QPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYD 124
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RDP +F HFI SQKR P + LRD WDF + PE+ HQV L RG
Sbjct: 125 LVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRG 184
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
+P +R M+GYGSHT+ VN E + K+HF + QG+ N+S ATK+A + D+ +D
Sbjct: 185 LPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQD 244
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L+++IAKG+ P W YIQ + +EE KTYR+NPFD+TK Q D+P + VG + L++NP N
Sbjct: 245 LFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPKN 304
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
++A+IE AF+P+N +PGI +PD+ML GR +Y D ++R+GA+ NQ+PVN P V
Sbjct: 305 HFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNA-VH 363
Query: 811 NYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRG----AWSTYNATGDVKRYKTEDEDNFS 866
NY + M D+ Y PNS G W + D+D+F
Sbjct: 364 NYAFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFG 423
Query: 867 QPRILWSNVLDDAARDRMTTNIASVLK 893
Q L V D RD +A LK
Sbjct: 424 QAGTLVREVFSDQERDDFVETVAGALK 450
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
T G P S+ T+G GP+ L DT+ L+ HF PER HAKG GAFG FE
Sbjct: 9 TRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEV 68
Query: 154 RETIIK 159
E + K
Sbjct: 69 TEDVSK 74
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 153 DRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
DR+++ T+G GP+ L DT+ L+ HF+ PER HAKG GAFG FEV
Sbjct: 19 DRQSL--TVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEV 68
>pdb|1GWH|A Chain A, Atomic Resolution Structure Of Micrococcus Lysodeikticus
Catalase Complexed With Nadph
pdb|1GWE|A Chain A, Atomic Resolution Structure Of Micrococcus Lysodeikticus
Catalase
Length = 503
Score = 339 bits (869), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 176/387 (45%), Positives = 236/387 (60%), Gaps = 6/387 (1%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VT D++ TKA +F + G +T RFSTV GE GS DT RD RGFAL+FYTE+GN+D
Sbjct: 71 FEVTEDVSKYTKALVF-QPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYD 129
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RDP +F HFI SQKR P + LRD WDF + PE+ HQV L RG
Sbjct: 130 LVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRG 189
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
+P +R M+GYGSHT+ VN E + K+HF + QG+ N+S ATK+A + D+ +D
Sbjct: 190 LPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQD 249
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L+++IAKG+ P W YIQ + +EE KTYR+NPFD+TK Q D+P + VG + L++NP N
Sbjct: 250 LFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPEN 309
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
++A+IE AF+P+N +PGI +PD+ML GR +Y D ++R+GA+ NQ+PVN P V
Sbjct: 310 HFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNA-VH 368
Query: 811 NYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRG----AWSTYNATGDVKRYKTEDEDNFS 866
NY + M D+ Y PNS G W + D+D+F
Sbjct: 369 NYAFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFG 428
Query: 867 QPRILWSNVLDDAARDRMTTNIASVLK 893
Q L V D RD +A LK
Sbjct: 429 QAGTLVREVFSDQERDDFVETVAGALK 455
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
T G P S+ T+G GP+ L DT+ L+ HF PER HAKG GAFG FE
Sbjct: 14 TRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEV 73
Query: 154 RETIIK 159
E + K
Sbjct: 74 TEDVSK 79
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 153 DRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
DR+++ T+G GP+ L DT+ L+ HF+ PER HAKG GAFG FEV
Sbjct: 24 DRQSL--TVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEV 73
>pdb|1GWF|A Chain A, Compound Ii Structure Of Micrococcus Lysodeikticus
Catalase
Length = 503
Score = 335 bits (860), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 175/387 (45%), Positives = 235/387 (60%), Gaps = 6/387 (1%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ VT D++ TKA +F + G +T RFSTV GE GS DT RD RGFAL+FYTE+GN+D
Sbjct: 71 FEVTEDVSKYTKALVF-QPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYD 129
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
LVGNNTPIFF+RDP +F HFI SQKR P + LRD WDF + PE+ HQV L RG
Sbjct: 130 LVGNNTPIFFLRDPXKFTHFIRSQKRLPDSGLRDATXQWDFWTNNPESAHQVTYLXGPRG 189
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
+P +R M+GYGSHT+ VN E + K+HF + QG+ N+S ATK+A + D+ +D
Sbjct: 190 LPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQD 249
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
L+++IAKG+ P W YIQ + +EE KTYR+NPFD+TK Q D+P + VG + L++NP N
Sbjct: 250 LFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPEN 309
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
++A+IE AF+P+N +PGI +PD+ML GR +Y D ++R+GA+ NQ+PVN P V
Sbjct: 310 HFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNA-VH 368
Query: 811 NYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRG----AWSTYNATGDVKRYKTEDEDNFS 866
NY + D+ Y PNS G W + D+D+F
Sbjct: 369 NYAFEGQXWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFG 428
Query: 867 QPRILWSNVLDDAARDRMTTNIASVLK 893
Q L V D RD +A LK
Sbjct: 429 QAGTLVREVFSDQERDDFVETVAGALK 455
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
T G P S+ T+G GP+ L DT+ L+ HF PER HAKG GAFG FE
Sbjct: 14 TRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRXNIPERRPHAKGSGAFGEFEV 73
Query: 154 RETIIK 159
E + K
Sbjct: 74 TEDVSK 79
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 153 DRETIIKTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
DR+++ T+G GP+ L DT+ L+ HF+ PER HAKG GAFG FEV
Sbjct: 24 DRQSL--TVGSEGPIVLHDTHLLETHQHFNRXNIPERRPHAKGSGAFGEFEV 73
>pdb|2J2M|A Chain A, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|B Chain B, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|C Chain C, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|D Chain D, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
Length = 491
Score = 311 bits (798), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 153/359 (42%), Positives = 219/359 (61%), Gaps = 3/359 (0%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ V + + TKAA E G + PV ARFSTV S +T RDPRGF++KFYTE+GNWD
Sbjct: 66 FKVKNSMKKYTKAAFLQEEGTEVPVFARFSTVIHGTHSPETLRDPRGFSVKFYTEEGNWD 125
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDRG 630
VGNN P+FF+RD +F +HS K +P T+++D D +WDF++L PE+T+ +M +F+D G
Sbjct: 126 FVGNNLPVFFIRDAMKFPDMVHSLKPDPRTNIQDPDRYWDFMTLRPESTNMLMHIFTDEG 185
Query: 631 IPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRD 690
IP +R M G H+FK VN VY K + +G+ N+S AT++ D +++ D
Sbjct: 186 IPASYRKMRGSSVHSFKWVNAHGNTVYIKLRWVPKEGVHNLSADEATEVQGKDFNHASND 245
Query: 691 LYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGN 750
+ I G+FP W ++QV+ + + + ++P D TK W + P VG M L+KN N
Sbjct: 246 TFQAIENGDFPEWDLFVQVLDPADVENFDFDPLDATKDWFEDVIPFQHVGTMTLNKNVDN 305
Query: 751 YYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYRVRVA 810
Y+AE E + FNP L+PG+ P+ DK+LQGRL SY DT HR+G N+ Q+P+NCP+ +V
Sbjct: 306 YFAETESVGFNPGVLVPGMLPSEDKLLQGRLFSYSDTQRHRIGPNYQQLPINCPF-AQVN 364
Query: 811 NYQRDAPMAIDNQNGAPNYYPNSFKG-PEPTPRGAWSTYNATGDVK-RYKTEDEDNFSQ 867
NYQRD M Q + NY PN ++ P+ TP T D+ R + E +NF Q
Sbjct: 365 NYQRDGAMPFKQQTSSVNYEPNRYQDEPKQTPEYTEDTQPLHDDIHGRLEIEKTNNFGQ 423
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G P+ +T G GP LED ++K+ HF ER PERVVHA+G GA G F+
Sbjct: 9 TTNQGVPIGDNQNSRTAGRRGPTLLEDYQLIEKIAHFDRERVPERVVHARGFGAHGVFKV 68
Query: 154 RETIIK 159
+ ++ K
Sbjct: 69 KNSMKK 74
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 159 KTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEF 216
+T G GP LED ++K+ HF ER PERVVHA+G GA G F+V+ K F
Sbjct: 23 RTAGRRGPTLLEDYQLIEKIAHFDRERVPERVVHARGFGAHGVFKVKNSMKKYTKAAF 80
>pdb|1M7S|A Chain A, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|B Chain B, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|C Chain C, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|D Chain D, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
Length = 484
Score = 299 bits (765), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 223/377 (59%), Gaps = 10/377 (2%)
Query: 499 VVFNITTPITIGYPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGF 558
VV T + + + DI+ L+KA +F G++TPV RFS+V S +T RDP GF
Sbjct: 50 VVHARGTGVKGEFTASADISDLSKATVFKS-GEKTPVFVRFSSVVHGNHSPETLRDPHGF 108
Query: 559 ALKFYTEDGNWDLVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPET 618
A KFYT DGNWDLVGNN P FF+RD +F +H+ K +P T+L + +DF S +PE
Sbjct: 109 ATKFYTADGNWDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDSRRFDFFSHVPEA 168
Query: 619 THQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATK 678
T + +L+S+ G P G+R M G G H +KLVN E Y KFH+++ QGIKN+ P+ +
Sbjct: 169 TRTLTLLYSNEGTPAGYRFMDGNGVHAYKLVNAKGEVHYVKFHWKSLQGIKNLDPKEVAQ 228
Query: 679 LAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLP 738
+ + D + DL I KG+FP W Y+QV+ EE + ++P D TKIWP D P
Sbjct: 229 VQSKDYSHLTNDLVGAIKKGDFPKWDLYVQVLKPEELAKFDFDPLDATKIWP--DVPEKK 286
Query: 739 VGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQ 798
+G MVL+KN N++ E EQ+A P NL+PGIEP+ D++LQGR+ SY DT ++RLGAN
Sbjct: 287 IGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPSEDRLLQGRVFSYADTQMYRLGANGLS 346
Query: 799 IPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTP---RGAWSTYNATGDVK 855
+PVN P +V V N +D + + NY P+ EP P + +S +G +
Sbjct: 347 LPVNQP-KVAVNNGNQDGALNTGHTTSGVNYEPSRL---EPRPADDKARYSELPLSGTTQ 402
Query: 856 RYKTEDEDNFSQPRILW 872
+ K E NF Q L+
Sbjct: 403 QAKITREQNFKQAGDLY 419
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 27/44 (61%)
Query: 159 KTIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
+T G GPV L+D L KL F ER PERVVHA+G G G F
Sbjct: 19 QTAGAQGPVLLQDVQLLQKLQRFDRERIPERVVHARGTGVKGEF 62
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 27/44 (61%)
Query: 108 KTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYF 151
+T G GPV L+D L KL F ER PERVVHA+G G G F
Sbjct: 19 QTAGAQGPVLLQDVQLLQKLQRFDRERIPERVVHARGTGVKGEF 62
>pdb|3P9S|A Chain A, Structure Of I274a Variant Of E. Coli Kate
pdb|3P9S|B Chain B, Structure Of I274a Variant Of E. Coli Kate
pdb|3P9S|C Chain C, Structure Of I274a Variant Of E. Coli Kate
pdb|3P9S|D Chain D, Structure Of I274a Variant Of E. Coli Kate
Length = 753
Score = 286 bits (733), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 224/373 (60%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G+HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGAHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|3TTT|A Chain A, Structure Of F413y Variant Of E. Coli Kate
pdb|3TTT|B Chain B, Structure Of F413y Variant Of E. Coli Kate
pdb|3TTT|C Chain C, Structure Of F413y Variant Of E. Coli Kate
pdb|3TTT|D Chain D, Structure Of F413y Variant Of E. Coli Kate
Length = 753
Score = 286 bits (732), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 224/373 (60%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL+SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLYSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|3TTV|A Chain A, Structure Of The F413e Variant Of E. Coli Kate
pdb|3TTV|B Chain B, Structure Of The F413e Variant Of E. Coli Kate
pdb|3TTV|C Chain C, Structure Of The F413e Variant Of E. Coli Kate
pdb|3TTV|D Chain D, Structure Of The F413e Variant Of E. Coli Kate
Length = 753
Score = 286 bits (731), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 224/373 (60%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL+SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLYSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKIAHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKIAHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|4ENV|A Chain A, Structure Of The S234i Variant Of E. Coli Kate
pdb|4ENV|B Chain B, Structure Of The S234i Variant Of E. Coli Kate
pdb|4ENV|C Chain C, Structure Of The S234i Variant Of E. Coli Kate
pdb|4ENV|D Chain D, Structure Of The S234i Variant Of E. Coli Kate
Length = 753
Score = 286 bits (731), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 224/377 (59%), Gaps = 29/377 (7%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNP--------VTHLRDWDAFWDFISLLPETTHQVMILFSD 628
PIFF++D +F F+H+ K P + H D FWD++SL PET H VM SD
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQIAH----DTFWDYVSLQPETLHNVMWAMSD 259
Query: 629 RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSI 688
RGIP +R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+
Sbjct: 260 RGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHR 319
Query: 689 RDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNP 748
R+L++ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP
Sbjct: 320 RELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNP 379
Query: 749 GNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CP 804
N++AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CP
Sbjct: 380 DNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCP 439
Query: 805 YRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKR 856
Y N+QRD + NY PNS P TP RG + +Y G+ R
Sbjct: 440 YH----NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVR 495
Query: 857 YKTED-EDNFSQPRILW 872
++ + +S PR+ W
Sbjct: 496 ERSPSFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|3TTU|A Chain A, Structure Of F413y/h128n Double Variant Of E. Coli Kate
pdb|3TTU|B Chain B, Structure Of F413y/h128n Double Variant Of E. Coli Kate
pdb|3TTU|C Chain C, Structure Of F413y/h128n Double Variant Of E. Coli Kate
pdb|3TTU|D Chain D, Structure Of F413y/h128n Double Variant Of E. Coli Kate
Length = 753
Score = 286 bits (731), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 224/373 (60%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL+SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLYSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+V+A+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVNARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+V+A+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVNARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|4ENU|A Chain A, Structure Of The S234d Variant Of E. Coli Kate
pdb|4ENU|B Chain B, Structure Of The S234d Variant Of E. Coli Kate
pdb|4ENU|C Chain C, Structure Of The S234d Variant Of E. Coli Kate
pdb|4ENU|D Chain D, Structure Of The S234d Variant Of E. Coli Kate
Length = 753
Score = 286 bits (731), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 159/373 (42%), Positives = 225/373 (60%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNP---VTHLRD-WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + +D D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQDAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|3P9R|A Chain A, Structure Of I274g Variant Of E. Coli Kate
pdb|3P9R|B Chain B, Structure Of I274g Variant Of E. Coli Kate
pdb|3P9R|C Chain C, Structure Of I274g Variant Of E. Coli Kate
pdb|3P9R|D Chain D, Structure Of I274g Variant Of E. Coli Kate
Length = 753
Score = 286 bits (731), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGGHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|3P9P|A Chain A, Structure Of I274v Variant Of E. Coli Kate
pdb|3P9P|B Chain B, Structure Of I274v Variant Of E. Coli Kate
pdb|3P9P|C Chain C, Structure Of I274v Variant Of E. Coli Kate
pdb|3P9P|D Chain D, Structure Of I274v Variant Of E. Coli Kate
Length = 753
Score = 285 bits (730), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGVHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|3TTW|A Chain A, Structure Of The F413e Variant Of E. Coli Kate
pdb|3TTW|B Chain B, Structure Of The F413e Variant Of E. Coli Kate
pdb|3TTW|C Chain C, Structure Of The F413e Variant Of E. Coli Kate
pdb|3TTW|D Chain D, Structure Of The F413e Variant Of E. Coli Kate
Length = 753
Score = 285 bits (730), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLESYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1GGH|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant
Length = 753
Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+V A+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVAARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+V A+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVAARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|4ENP|A Chain A, Structure Of E530a Variant E. Coli Kate
pdb|4ENP|B Chain B, Structure Of E530a Variant E. Coli Kate
pdb|4ENP|C Chain C, Structure Of E530a Variant E. Coli Kate
pdb|4ENP|D Chain D, Structure Of E530a Variant E. Coli Kate
Length = 753
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|3TTX|A Chain A, Structure Of The F413k Variant Of E. Coli Kate
pdb|3TTX|B Chain B, Structure Of The F413k Variant Of E. Coli Kate
pdb|3TTX|C Chain C, Structure Of The F413k Variant Of E. Coli Kate
pdb|3TTX|D Chain D, Structure Of The F413k Variant Of E. Coli Kate
Length = 753
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLKSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|4ENT|A Chain A, Structure Of The S234a Variant Of E. Coli Kate
pdb|4ENT|B Chain B, Structure Of The S234a Variant Of E. Coli Kate
pdb|4ENT|C Chain C, Structure Of The S234a Variant Of E. Coli Kate
pdb|4ENT|D Chain D, Structure Of The S234a Variant Of E. Coli Kate
Length = 753
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQAAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1IPH|A Chain A, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|B Chain B, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|C Chain C, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|D Chain D, Structure Of Catalase Hpii From Escherichia Coli
pdb|1GGE|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution
Length = 753
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|4ENS|A Chain A, Structure Of E530q Variant Of E. Coli Kate
pdb|4ENS|B Chain B, Structure Of E530q Variant Of E. Coli Kate
pdb|4ENS|C Chain C, Structure Of E530q Variant Of E. Coli Kate
pdb|4ENS|D Chain D, Structure Of E530q Variant Of E. Coli Kate
Length = 753
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|4ENW|A Chain A, Structure Of The S234n Variant Of E. Coli Kate
pdb|4ENW|B Chain B, Structure Of The S234n Variant Of E. Coli Kate
pdb|4ENW|C Chain C, Structure Of The S234n Variant Of E. Coli Kate
pdb|4ENW|D Chain D, Structure Of The S234n Variant Of E. Coli Kate
Length = 753
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHL----RDWDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQNAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|4ENR|A Chain A, Structure Of E530i Variant E. Coli Kate
pdb|4ENR|B Chain B, Structure Of E530i Variant E. Coli Kate
pdb|4ENR|C Chain C, Structure Of E530i Variant E. Coli Kate
pdb|4ENR|D Chain D, Structure Of E530i Variant E. Coli Kate
Length = 753
Score = 285 bits (728), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1GG9|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GGF|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide
Length = 753
Score = 285 bits (728), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+V+A+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVNARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+V+A+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVNARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1QF7|A Chain A, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|B Chain B, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|C Chain C, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|D Chain D, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
Length = 753
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 222/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFQPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|4ENQ|A Chain A, Structure Of E530d Variant E. Coli Kate
pdb|4ENQ|B Chain B, Structure Of E530d Variant E. Coli Kate
pdb|4ENQ|C Chain C, Structure Of E530d Variant E. Coli Kate
pdb|4ENQ|D Chain D, Structure Of E530d Variant E. Coli Kate
Length = 753
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1P81|A Chain A, Crystal Structure Of The D181e Variant Of Catalase Hpii
From E. Coli
pdb|1P81|B Chain B, Crystal Structure Of The D181e Variant Of Catalase Hpii
From E. Coli
pdb|1P81|C Chain C, Crystal Structure Of The D181e Variant Of Catalase Hpii
From E. Coli
pdb|1P81|D Chain D, Crystal Structure Of The D181e Variant Of Catalase Hpii
From E. Coli
Length = 753
Score = 283 bits (724), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT R+ RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVREIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1CF9|A Chain A, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|B Chain B, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|C Chain C, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|D Chain D, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
Length = 753
Score = 283 bits (724), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 222/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFST G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTCQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1QWS|A Chain A, Structure Of The D181n Variant Of Catalase Hpii From E.
Coli
pdb|1QWS|B Chain B, Structure Of The D181n Variant Of Catalase Hpii From E.
Coli
pdb|1QWS|C Chain C, Structure Of The D181n Variant Of Catalase Hpii From E.
Coli
pdb|1QWS|D Chain D, Structure Of The D181n Variant Of Catalase Hpii From E.
Coli
Length = 753
Score = 283 bits (724), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT R+ RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRNIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1GGK|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant
Length = 753
Score = 283 bits (724), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 223/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVG+NT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGHNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1P80|A Chain A, Crystal Structure Of The D181q Variant Of Catalase Hpii
From E. Coli
pdb|1P80|B Chain B, Crystal Structure Of The D181q Variant Of Catalase Hpii
From E. Coli
pdb|1P80|C Chain C, Crystal Structure Of The D181q Variant Of Catalase Hpii
From E. Coli
pdb|1P80|D Chain D, Crystal Structure Of The D181q Variant Of Catalase Hpii
From E. Coli
Length = 753
Score = 283 bits (723), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 222/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT R RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRQIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1P7Z|A Chain A, Crystal Structure Of The D181s Variant Of Catalase Hpii
From E. Coli
pdb|1P7Z|B Chain B, Crystal Structure Of The D181s Variant Of Catalase Hpii
From E. Coli
pdb|1P7Z|C Chain C, Crystal Structure Of The D181s Variant Of Catalase Hpii
From E. Coli
pdb|1P7Z|D Chain D, Crystal Structure Of The D181s Variant Of Catalase Hpii
From E. Coli
Length = 753
Score = 283 bits (723), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 222/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT R RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRSIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|3P9Q|A Chain A, Structure Of I274c Variant Of E. Coli Kate
pdb|3P9Q|B Chain B, Structure Of I274c Variant Of E. Coli Kate
pdb|3P9Q|C Chain C, Structure Of I274c Variant Of E. Coli Kate
pdb|3P9Q|D Chain D, Structure Of I274c Variant Of E. Coli Kate
pdb|3PQ2|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ2|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ2|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ2|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ3|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ3|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ3|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ3|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ4|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ4|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ4|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ4|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ5|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ5|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ5|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ5|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ6|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ6|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ6|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ6|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ7|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ7|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ7|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ7|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ8|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
pdb|3PQ8|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
pdb|3PQ8|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
pdb|3PQ8|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
Length = 753
Score = 282 bits (722), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 221/370 (59%), Gaps = 15/370 (4%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGCHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRVRVAN 811
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N P N
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRP-TAPYHN 442
Query: 812 YQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTED-E 862
+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 443 FQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFG 502
Query: 863 DNFSQPRILW 872
+ +S PR+ W
Sbjct: 503 EYYSHPRLFW 512
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1GGJ|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant
Length = 753
Score = 282 bits (722), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 222/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVG NT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGANT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1P7Y|A Chain A, Crystal Structure Of The D181a Variant Of Catalase Hpii
From E. Coli
pdb|1P7Y|B Chain B, Crystal Structure Of The D181a Variant Of Catalase Hpii
From E. Coli
pdb|1P7Y|C Chain C, Crystal Structure Of The D181a Variant Of Catalase Hpii
From E. Coli
pdb|1P7Y|D Chain D, Crystal Structure Of The D181a Variant Of Catalase Hpii
From E. Coli
Length = 753
Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 222/373 (59%), Gaps = 21/373 (5%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT R RGFA KFYTE+G +DLVGNNT
Sbjct: 144 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRAIRGFATKFYTEEGIFDLVGNNT 203
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHLRD----WDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 204 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 263
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDLY 692
+R M G+G HTF+L+N + + + +FH++ G ++ A KL DPD+ R+L+
Sbjct: 264 RSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELW 323
Query: 693 DNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYY 752
+ I G+FP + Q++ E+ + ++ D TK+ P+ P+ VG MVL++NP N++
Sbjct: 324 EAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFF 383
Query: 753 AEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVN---CPYRVR 808
AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF++IP+N CPY
Sbjct: 384 AENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYH-- 441
Query: 809 VANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWSTYN--ATGDVKRYKTE 860
N+QRD + NY PNS P TP RG + +Y G+ R ++
Sbjct: 442 --NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSP 499
Query: 861 D-EDNFSQPRILW 872
+ +S PR+ W
Sbjct: 500 SFGEYYSHPRLFW 512
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 98 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 157
Query: 222 RIVPL 226
+I P+
Sbjct: 158 KITPV 162
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 140
Query: 154 RETI 157
+++
Sbjct: 141 YKSL 144
>pdb|1SY7|A Chain A, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution.
pdb|1SY7|B Chain B, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution
Length = 715
Score = 274 bits (700), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/374 (38%), Positives = 212/374 (56%), Gaps = 10/374 (2%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ V + LT A + ++ ++TPV RFSTV G RGSADT RD RGFA+KFYTE+GNWD
Sbjct: 81 FKVYESASDLTMAPVLTDTSRETPVFVRFSTVLGSRGSADTVRDVRGFAVKFYTEEGNWD 140
Query: 571 LVGNNTPIFFVRDPFRFIHFIHSQKRNPVTHLRDWDA----FWDFISLLPETTHQVMILF 626
LVGNN P+FF++D +F IH+ K P + + FWDF E TH
Sbjct: 141 LVGNNIPVFFIQDAIKFPDVIHAGKPEPHNEVPQAQSAHNNFWDFQFNHTEATHMFTWAM 200
Query: 627 SDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDY 686
SDR IP R M G+G +T+ L+N + + KFH+ + G+ ++ A KLA DPD+
Sbjct: 201 SDRAIPRSLRMMQGFGVNTYTLINAQGKRHFVKFHWTPELGVHSLVWDEALKLAGQDPDF 260
Query: 687 SIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDK 746
+DL++ I G +P W F IQ + E+ + ++ D TKIWP+ P+ +G M L++
Sbjct: 261 HRKDLWEAIENGAYPKWKFGIQAIAEEDEHKFDFDILDATKIWPEDLVPVRYIGEMELNR 320
Query: 747 NPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGANFNQIPVNCPYR 806
NP ++ + EQ+AF ++++ GI + D +LQGR SY DT I RLG NF ++P+N P
Sbjct: 321 NPDEFFPQTEQIAFCTSHVVNGIGFSDDPLLQGRNFSYFDTQISRLGVNFQELPINRPV- 379
Query: 807 VRVANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTPRGAWSTY--NATGDVKRYKTED- 861
V N+ RD M G NYYPN F P G + Y G R ++
Sbjct: 380 CPVMNFNRDGAMRHTISRGTVNYYPNRFDACPPASLKEGGYLEYAQKVAGIKARARSAKF 439
Query: 862 EDNFSQPRILWSNV 875
+++FSQ ++ ++++
Sbjct: 440 KEHFSQAQLFYNSM 453
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 165 GPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEV 204
GP LED + +++ F ER PERVVHA+G GAFG F+V
Sbjct: 44 GPSLLEDPFARERIMRFDHERIPERVVHARGSGAFGKFKV 83
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 114 GPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFEDRET 156
GP LED + +++ F ER PERVVHA+G GAFG F+ E+
Sbjct: 44 GPSLLEDPFARERIMRFDHERIPERVVHARGSGAFGKFKVYES 86
>pdb|4AUE|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 717
Score = 268 bits (686), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 217/375 (57%), Gaps = 17/375 (4%)
Query: 516 DITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNN 575
D +++T A+ + GKQTPV RFSTV G RGSADT RD GFA +FYT++GN+D+VGNN
Sbjct: 116 DWSNITAASFLNATGKQTPVFVRFSTVAGSRGSADTARDVHGFATRFYTDEGNFDIVGNN 175
Query: 576 TPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSDRGI 631
P+FF++D +F IHS K P + D+ WDF S P T H + S GI
Sbjct: 176 IPVFFIQDAIQFPDLIHSVKPRPDNEIPQAATAHDSAWDFFSQQPSTMHTLFWAMSGHGI 235
Query: 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDL 691
P +RHM G+G HTF+ V D K+HF++ QG ++ + A L+ + D+ +DL
Sbjct: 236 PRSYRHMDGFGVHTFRFVKDDGSSKLIKWHFKSRQGKASLVWEEAQVLSGKNADFHRQDL 295
Query: 692 YDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNY 751
+D I GN P W +Q++ +A+ + ++ D TKI P+ PL +G + LD+NP NY
Sbjct: 296 WDAIESGNGPEWDVCVQIVDESQAQAFGFDLLDPTKIIPEEYAPLTKLGLLKLDRNPTNY 355
Query: 752 YAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRVRVA 810
+AE EQ+ F P +++ GI+ T D +LQGRL SY+DT ++R G NF Q+P+N P RV +
Sbjct: 356 FAETEQVMFQPGHIVRGIDFTEDPLLQGRLFSYLDTQLNRNGGPNFEQLPINMP-RVPIH 414
Query: 811 NYQRD-APMAIDNQNGAPNYYPNSFKGPEP------TPRGAWSTYNATGD---VKRYKTE 860
N RD A ++N P Y PN+ P RG ++ T V+
Sbjct: 415 NNNRDGAGQMFIHRNKYP-YTPNTLNSGYPRQANQNAGRGFFTAPGRTASGALVREVSPT 473
Query: 861 DEDNFSQPRILWSNV 875
D++SQPR+ ++++
Sbjct: 474 FNDHWSQPRLFFNSL 488
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYF 151
T+ G P+ +T +K G GP LED + K+ HF ER PER VHA+G GA G F
Sbjct: 55 TSDVGGPIQDQTSLKA-GIRGPTLLEDFMFRQKIQHFDHERVPERAVHARGAGAHGTF 111
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
G GP LED + K+ HF ER PER VHA+G GA G F
Sbjct: 71 GIRGPTLLEDFMFRQKIQHFDHERVPERAVHARGAGAHGTF 111
>pdb|4AUL|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 268 bits (686), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 217/375 (57%), Gaps = 17/375 (4%)
Query: 516 DITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNN 575
D +++T A+ + GKQTPV RFSTV G RGSADT RD GFA +FYT++GN+D+VGNN
Sbjct: 118 DWSNITAASFLNATGKQTPVFVRFSTVAGSRGSADTARDVHGFATRFYTDEGNFDIVGNN 177
Query: 576 TPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSDRGI 631
P+FF++D +F IHS K P + D+ WDF S P T H + S GI
Sbjct: 178 IPVFFIQDAIQFPDLIHSVKPRPDNEIPQAATAHDSAWDFFSQQPSTMHTLFWAMSGHGI 237
Query: 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDL 691
P +RHM G+G HTF+ V D K+HF++ QG ++ + A L+ + D+ +DL
Sbjct: 238 PRSYRHMDGFGVHTFRFVKDDGSSKLIKWHFKSRQGKASLVWEEAQVLSGKNADFHRQDL 297
Query: 692 YDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNY 751
+D I GN P W +Q++ +A+ + ++ D TKI P+ PL +G + LD+NP NY
Sbjct: 298 WDAIESGNGPEWDVCVQIVDESQAQAFGFDLLDPTKIIPEEYAPLTKLGLLKLDRNPTNY 357
Query: 752 YAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRVRVA 810
+AE EQ+ F P +++ GI+ T D +LQGRL SY+DT ++R G NF Q+P+N P RV +
Sbjct: 358 FAETEQVMFQPGHIVRGIDFTEDPLLQGRLFSYLDTQLNRNGGPNFEQLPINMP-RVPIH 416
Query: 811 NYQRD-APMAIDNQNGAPNYYPNSFKGPEP------TPRGAWSTYNATGD---VKRYKTE 860
N RD A ++N P Y PN+ P RG ++ T V+
Sbjct: 417 NNNRDGAGQMFIHRNKYP-YTPNTLNSGYPRQANQNAGRGFFTAPGRTASGALVREVSPT 475
Query: 861 DEDNFSQPRILWSNV 875
D++SQPR+ ++++
Sbjct: 476 FNDHWSQPRLFFNSL 490
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYF 151
T+ G P+ +T +K G GP LED + K+ HF ER PER V+A+G GA G F
Sbjct: 57 TSDVGGPIQDQTSLKA-GIRGPTLLEDFMFRQKIQHFDHERVPERAVNARGAGAHGTF 113
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
G GP LED + K+ HF ER PER V+A+G GA G F
Sbjct: 73 GIRGPTLLEDFMFRQKIQHFDHERVPERAVNARGAGAHGTF 113
>pdb|4AUM|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 268 bits (686), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 217/375 (57%), Gaps = 17/375 (4%)
Query: 516 DITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNN 575
D +++T A+ + GKQTPV RFSTV G RGSADT RD GFA +FYT++GN+D+VGNN
Sbjct: 118 DWSNITAASFLNATGKQTPVFVRFSTVAGSRGSADTARDVHGFATRFYTDEGNFDIVGNN 177
Query: 576 TPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSDRGI 631
P+FF++D +F IHS K P + D+ WDF S P T H + S GI
Sbjct: 178 IPVFFIQDAIQFPDLIHSVKPRPDNEIPQAATAHDSAWDFFSQQPSTMHTLFWAMSGHGI 237
Query: 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDL 691
P +RHM G+G HTF+ V D K+HF++ QG ++ + A L+ + D+ +DL
Sbjct: 238 PRSYRHMDGFGVHTFRFVKDDGSSKLIKWHFKSRQGKASLVWEEAQVLSGKNADFHRQDL 297
Query: 692 YDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNY 751
+D I GN P W +Q++ +A+ + ++ D TKI P+ PL +G + LD+NP NY
Sbjct: 298 WDAIESGNGPEWDVCVQIVDESQAQAFGFDLLDPTKIIPEEYAPLTKLGLLKLDRNPTNY 357
Query: 752 YAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRVRVA 810
+AE EQ+ F P +++ GI+ T D +LQGRL SY+DT ++R G NF Q+P+N P RV +
Sbjct: 358 FAETEQVMFQPGHIVRGIDFTEDPLLQGRLFSYLDTQLNRNGGPNFEQLPINMP-RVPIH 416
Query: 811 NYQRD-APMAIDNQNGAPNYYPNSFKGPEP------TPRGAWSTYNATGD---VKRYKTE 860
N RD A ++N P Y PN+ P RG ++ T V+
Sbjct: 417 NNNRDGAGQMFIHRNKYP-YTPNTLNSGYPRQANQNAGRGFFTAPGRTASGALVREVSPT 475
Query: 861 DEDNFSQPRILWSNV 875
D++SQPR+ ++++
Sbjct: 476 FNDHWSQPRLFFNSL 490
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYF 151
T+ G P+ +T +K G GP LED + K+ HF ER PER VHA+G GA G F
Sbjct: 57 TSDVGGPIQDQTSLKA-GIRGPTLLEDFMFRQKIQHFDHERVPERAVHARGAGAHGTF 113
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
G GP LED + K+ HF ER PER VHA+G GA G F
Sbjct: 73 GIRGPTLLEDFMFRQKIQHFDHERVPERAVHARGAGAHGTF 113
>pdb|4AUN|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|E Chain E, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|F Chain F, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|G Chain G, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|H Chain H, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/375 (39%), Positives = 216/375 (57%), Gaps = 17/375 (4%)
Query: 516 DITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNN 575
D +++T A+ + GKQTPV RFST G RGSADT RD GFA +FYT++GN+D+VGNN
Sbjct: 118 DWSNITAASFLNATGKQTPVFVRFSTFAGSRGSADTARDVHGFATRFYTDEGNFDIVGNN 177
Query: 576 TPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSDRGI 631
P+FF++D +F IHS K P + D+ WDF S P T H + S GI
Sbjct: 178 IPVFFIQDAIQFPDLIHSVKPRPDNEIPQAATAHDSAWDFFSQQPSTMHTLFWAMSGHGI 237
Query: 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDL 691
P +RHM G+G HTF+ V D K+HF++ QG ++ + A L+ + D+ +DL
Sbjct: 238 PRSYRHMDGFGVHTFRFVKDDGSSKLIKWHFKSRQGKASLVWEEAQVLSGKNADFHRQDL 297
Query: 692 YDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNY 751
+D I GN P W +Q++ +A+ + ++ D TKI P+ PL +G + LD+NP NY
Sbjct: 298 WDAIESGNGPEWDVCVQIVDESQAQAFGFDLLDPTKIIPEEYAPLTKLGLLKLDRNPTNY 357
Query: 752 YAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRVRVA 810
+AE EQ+ F P +++ GI+ T D +LQGRL SY+DT ++R G NF Q+P+N P RV +
Sbjct: 358 FAETEQVMFQPGHIVRGIDFTEDPLLQGRLFSYLDTQLNRNGGPNFEQLPINMP-RVPIH 416
Query: 811 NYQRD-APMAIDNQNGAPNYYPNSFKGPEP------TPRGAWSTYNATGD---VKRYKTE 860
N RD A ++N P Y PN+ P RG ++ T V+
Sbjct: 417 NNNRDGAGQMFIHRNKYP-YTPNTLNSGYPRQANQNAGRGFFTAPGRTASGALVREVSPT 475
Query: 861 DEDNFSQPRILWSNV 875
D++SQPR+ ++++
Sbjct: 476 FNDHWSQPRLFFNSL 490
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYF 151
T+ G P+ +T +K G GP LED + K+ HF ER PER VHA+G GA G F
Sbjct: 57 TSDVGGPIQDQTSLKA-GIRGPTLLEDFMFRQKIQHFDHERVPERAVHARGAGAHGTF 113
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
G GP LED + K+ HF ER PER VHA+G GA G F
Sbjct: 73 GIRGPTLLEDFMFRQKIQHFDHERVPERAVHARGAGAHGTF 113
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 266 bits (679), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 224/374 (59%), Gaps = 15/374 (4%)
Query: 516 DITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNN 575
D +++T A+ KQTPV RFSTV G RGSADT RD GFA +FYT++GN+D+VGNN
Sbjct: 86 DWSNITAASFLGAKDKQTPVFVRFSTVAGSRGSADTARDVHGFATRFYTDEGNFDIVGNN 145
Query: 576 TPIFFVRDPFRFIHFIHSQKRNPVTHL----RDWDAFWDFISLLPETTHQVMILFSDRGI 631
P+FF++D RF IHS K +P + D+ WDF S P H + S GI
Sbjct: 146 IPVFFIQDAIRFPDLIHSVKPSPDNEVPQAATAHDSAWDFFSSQPSALHTLFWAMSGNGI 205
Query: 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDL 691
P +RHM G+G HTF+LV +D + K+H++T QG + + A LA + D+ +DL
Sbjct: 206 PRSYRHMDGFGIHTFRLVTEDGKSKLVKWHWKTKQGKAALVWEEAQVLAGKNADFHRQDL 265
Query: 692 YDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNY 751
+D I GN PSW +Q++ ++A+ Y ++ D TK P+ PL +G M L++NP NY
Sbjct: 266 WDAIESGNAPSWELAVQLIDEDKAQAYGFDLLDPTKFLPEEFAPLQVLGEMTLNRNPMNY 325
Query: 752 YAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHR-LGANFNQIPVNCPYRVRVA 810
+AE EQ++F P +++ G++ T D +LQGRL+SY+DT ++R G NF Q+P+N P V
Sbjct: 326 FAETEQISFQPGHIVRGVDFTEDPLLQGRLYSYLDTQLNRHRGPNFEQLPINRPVS-GVH 384
Query: 811 NYQRD----APMAIDNQNGAPNYYPNSF--KGPEPTPRGAWST--YNATGDVKRYKTED- 861
N RD A + + + +P+Y + + + RG ++T A+G + R +
Sbjct: 385 NNHRDGQGQAWIHKNIHHYSPSYLNKGYPAQANQTVGRGFFTTPGRTASGVLNRELSATF 444
Query: 862 EDNFSQPRILWSNV 875
+D+++QPR+ ++++
Sbjct: 445 DDHYTQPRLFFNSL 458
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 89 EIPVD------TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHA 142
E+ VD TT G ++ + +K G G LED + KL HF ER PERVVHA
Sbjct: 14 EVEVDDNGQFMTTDFGGNIEEQFSLKA-GGRGSTLLEDFIFRQKLQHFDHERIPERVVHA 72
Query: 143 KGGGAFGYF 151
+G GA G F
Sbjct: 73 RGAGAHGIF 81
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 25/41 (60%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
G G LED + KL HF ER PERVVHA+G GA G F
Sbjct: 41 GGRGSTLLEDFIFRQKLQHFDHERIPERVVHARGAGAHGIF 81
>pdb|2IUF|A Chain A, The Structures Of Penicillium Vitale Catalase: Resting
State, Oxidised State (Compound I) And Complex With
Aminotriazole
pdb|2IUF|E Chain E, The Structures Of Penicillium Vitale Catalase: Resting
State, Oxidised State (Compound I) And Complex With
Aminotriazole
Length = 688
Score = 262 bits (669), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/417 (35%), Positives = 234/417 (56%), Gaps = 43/417 (10%)
Query: 516 DITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNN 575
D ++LT A+ S GK+TP+ RFSTV G RGSADT RD GFA +FYT++GN+D+VGNN
Sbjct: 78 DWSNLTAASFLSAEGKETPMFTRFSTVAGSRGSADTARDVHGFATRFYTDEGNFDIVGNN 137
Query: 576 TPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSDRGI 631
P+FF++D F IH+ K + D+ WDF S P H ++ + GI
Sbjct: 138 IPVFFIQDAILFPDLIHAVKPRGDNQIPQAATAHDSAWDFFSQQPSVLHTLLWAXAGHGI 197
Query: 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDL 691
P FRH++G+G HTF+LV D + KFH++ QG + + A + A + D+ +DL
Sbjct: 198 PRSFRHVNGFGVHTFRLVTDDGKTKLVKFHWKGLQGKASFVWEEAQQTAGKNADFXRQDL 257
Query: 692 YDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNY 751
+ +I G FP W +Q+M ++ + ++ D TKI P+ P+ +G M L++NP NY
Sbjct: 258 FQSIQAGRFPEWELGVQIMQEQDQLKFGFDLLDPTKIVPEELVPVTILGKMQLNRNPXNY 317
Query: 752 YAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRVRVA 810
+AE EQ+ F P +++ G++ T D +LQGRL SY+DT ++R G NF Q+P+N P
Sbjct: 318 FAETEQVMFQPGHIVRGVDFTEDPLLQGRLFSYLDTQLNRHGGPNFEQLPINRPR----- 372
Query: 811 NYQRDAPMAIDNQNGAPNYY----PNSFKGPEPTPRGAWSTYN--------------ATG 852
AP+ +N++GA + PN++ P +G+ N A+G
Sbjct: 373 -----APIHNNNRDGAGQMFIPLDPNAYS-PNTENKGSPKQANETVGKGFFTAPERTASG 426
Query: 853 DVKR-YKTEDEDNFSQPRILWSNVLD-------DAARDRMTTNIASVLKLAAPFIQI 901
++R T E+N+SQPR+ W+++++ DA R T+N++S + IQ+
Sbjct: 427 KLQRTLSTTFENNWSQPRLFWNSLVNAQKEFIVDAXRFE-TSNVSSSVVRDDVIIQL 482
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYF 151
T++ G P+ E + + G G L+D + +K+ F ER PER VHA+G GA G F
Sbjct: 17 TSNVGGPIQDENSL-SAGQRGATLLQDFIFREKIQRFDHERVPERAVHARGTGAHGTF 73
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
+ G G L+D + +K+ F ER PER VHA+G GA G F
Sbjct: 31 SAGQRGATLLQDFIFREKIQRFDHERVPERAVHARGTGAHGTF 73
>pdb|2XF2|A Chain A, Pvc-At
pdb|2XF2|E Chain E, Pvc-At
Length = 688
Score = 262 bits (669), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 150/417 (35%), Positives = 234/417 (56%), Gaps = 43/417 (10%)
Query: 516 DITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNN 575
D ++LT A+ S GK+TP+ RFSTV G RGSADT RD GFA +FYT++GN+D+VGNN
Sbjct: 78 DWSNLTAASFLSAEGKETPMFTRFSTVAGSRGSADTARDVHGFATRFYTDEGNFDIVGNN 137
Query: 576 TPIFFVRDPFRFIHFIHSQKRNPVTHLRDW----DAFWDFISLLPETTHQVMILFSDRGI 631
P+FF++D F IH+ K + D+ WDF S P H ++ + GI
Sbjct: 138 IPVFFIQDAILFPDLIHAVKPRGDNQIPQAATAHDSAWDFFSQQPSVLHTLLWAMAGHGI 197
Query: 632 PDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIRDL 691
P FRH++G+G HTF+LV D + KFH++ QG + + A + A + D+ +DL
Sbjct: 198 PRSFRHVNGFGVHTFRLVTDDGKTKLVKFHWKGLQGKASFVWEEAQQTAGKNADFMRQDL 257
Query: 692 YDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNY 751
+ +I G FP W +Q+M ++ + ++ D TKI P+ P+ +G M L++NP NY
Sbjct: 258 FQSIQAGRFPEWELGVQIMQEQDQLKFGFDLLDPTKIVPEELVPVTILGKMQLNRNPMNY 317
Query: 752 YAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NFNQIPVNCPYRVRVA 810
+AE EQ+ F P +++ G++ T D +LQGRL SY+DT ++R G NF Q+P+N P
Sbjct: 318 FAETEQVMFQPGHIVRGVDFTEDPLLQGRLFSYLDTQLNRHGGPNFEQLPINRPR----- 372
Query: 811 NYQRDAPMAIDNQNGAPNYY----PNSFKGPEPTPRGAWSTYN--------------ATG 852
AP+ +N++GA + PN++ P +G+ N A+G
Sbjct: 373 -----APIHNNNRDGAGQMFIPLDPNAYS-PNTENKGSPKQANETVGKGFFTAPERTASG 426
Query: 853 DVKR-YKTEDEDNFSQPRILWSNVLD-------DAARDRMTTNIASVLKLAAPFIQI 901
++R T E+N+SQPR+ W+++++ DA R T+N++S + IQ+
Sbjct: 427 KLQRTLSTTFENNWSQPRLFWNSLVNAQKEFIVDAMRFE-TSNVSSSVVRDDVIIQL 482
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYF 151
T++ G P+ E + + G G L+D + +K+ F ER PER VHA+G GA G F
Sbjct: 17 TSNVGGPIQDENSL-SAGQRGATLLQDFIFREKIQRFDHERVPERAVHARGTGAHGTF 73
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 160 TIGPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYF 202
+ G G L+D + +K+ F ER PER VHA+G GA G F
Sbjct: 31 SAGQRGATLLQDFIFREKIQRFDHERVPERAVHARGTGAHGTF 73
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 185/312 (59%), Gaps = 6/312 (1%)
Query: 226 LEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDAT 285
L+ + RGIT+D+ +FETK T++DAPGH+DF+ NMITGA+QAD A+LVV A
Sbjct: 59 LDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSAR 118
Query: 286 RGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT--VSWSQDRFQEIVTKLGAFLK 343
+GEFE G + GQTREH LL R++G+ Q+ V +NK+D V++ Q R++ +V+ L F+K
Sbjct: 119 KGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMK 178
Query: 344 QAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRM 403
G++ I ++P S G+NL S P + WY+GP L++ +D + P++P+ KPLR+
Sbjct: 179 GLGYQVDKIPFIPVSAWKGDNLIERS--PNM-PWYNGPTLVEALDQLQPPAKPVDKPLRI 235
Query: 404 SVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNV 463
V ++Y G+G GRVETGV+ G+KV+ P V V+++ + + A GDN+
Sbjct: 236 PVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNI 295
Query: 464 SVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGY-PVTHDITHLTK 522
+ + ++ G + L P V+ +FEARI V + IT+GY PV H T
Sbjct: 296 GFAVRGVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVS 355
Query: 523 AAIFSEIGKQTP 534
+ I K P
Sbjct: 356 SRIIEIKAKLDP 367
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETG 83
K ++LVVIGHVD GKSTL+GHLLY +G + +++ + E ++K GK+SF +AWILD+
Sbjct: 4 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 63
Query: 84 EESSCEIPVDTT 95
EE I +D T
Sbjct: 64 EERERGITIDLT 75
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 185/312 (59%), Gaps = 6/312 (1%)
Query: 226 LEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDAT 285
L+ + RGIT+D+ +FETK T++DAPGH+DF+ NMITGA+QAD A+LVV A
Sbjct: 62 LDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSAR 121
Query: 286 RGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDT--VSWSQDRFQEIVTKLGAFLK 343
+GEFE G + GQTREH LL R++G+ Q+ V +NK+D V++ Q R++ +V+ L F+K
Sbjct: 122 KGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMK 181
Query: 344 QAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRM 403
G++ I ++P S G+NL S P + WY+GP L++ +D + P++P+ KPLR+
Sbjct: 182 GLGYQVDKIPFIPVSAWKGDNLIERS--PNM-PWYNGPTLVEALDQLQPPAKPVDKPLRI 238
Query: 404 SVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNV 463
V ++Y G+G GRVETGV+ G+KV+ P V V+++ + + A GDN+
Sbjct: 239 PVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNI 298
Query: 464 SVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGY-PVTHDITHLTK 522
+ + ++ G + L P V+ +FEARI V + IT+GY PV H T
Sbjct: 299 GFAVRGVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVS 358
Query: 523 AAIFSEIGKQTP 534
+ I K P
Sbjct: 359 SRIIEIKAKLDP 370
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETG 83
K ++LVVIGHVD GKSTL+GHLLY +G + +++ + E ++K GK+SF +AWILD+
Sbjct: 7 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 66
Query: 84 EESSCEIPVDTT 95
EE I +D T
Sbjct: 67 EERERGITIDLT 78
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 174/281 (61%), Gaps = 8/281 (2%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGF 293
++G T++VG++ FET+ K+ T+LDAPGHK F+PNMI GA+QAD+A+LV+ A +GEFETGF
Sbjct: 78 DKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGF 137
Query: 294 ESGGQTREHALLVRSLGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFR-DS 350
E GGQTREHA+L ++ GV L V+INK+D TV+WS +R++E KL FLK+ GF
Sbjct: 138 EKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKK 197
Query: 351 DIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYK 410
DI ++PCSGLTG NL S WY G + +DN +R + P+R+ + D YK
Sbjct: 198 DIHFMPCSGLTGANLKEQSD---FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK 254
Query: 411 STGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNY 470
G+ + G++E+G I G+++++ P V + D+ G+N+ + L
Sbjct: 255 DMGT--VVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGI 312
Query: 471 DQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGY 511
+++ + GF+L + S+ C F+ +IV+ + I GY
Sbjct: 313 EEEEILPGFILCDPSNLCHSGRTFDVQIVIIEHKSIICPGY 353
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 21 AGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILD 80
A K +++V IGHVDAGKST+ G ++YL G V R + K+E E+K+ ++++ +W LD
Sbjct: 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALD 71
Query: 81 ETGEE 85
EE
Sbjct: 72 TNQEE 76
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 185/312 (59%), Gaps = 6/312 (1%)
Query: 226 LEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDAT 285
L+ + RG+T+++ +FETK + T++DAPGH+DF+ NMITGA+QAD A+LVV A
Sbjct: 59 LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAK 118
Query: 286 RGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLK 343
+GE+E G GQTREH +L +++G++QL V +NK+D + + R++EIV ++ F++
Sbjct: 119 KGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMR 178
Query: 344 QAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRM 403
GF + + +VP +G+N+T S+ WY+GP L + +D + P +P+ KPLR+
Sbjct: 179 SYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNGPTLEEYLDQLELPPKPVDKPLRI 235
Query: 404 SVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNV 463
+ D+Y +G G GRVE+GV+ G+K++ P +V V+++ + A GDN+
Sbjct: 236 PIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNI 295
Query: 464 SVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGY-PVTHDITHLTK 522
+ +++++ G ++ ++P V+ +F ARI+V T + GY PV H T
Sbjct: 296 GFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVA 355
Query: 523 AAIFSEIGKQTP 534
+ + K P
Sbjct: 356 CRVSELVSKLDP 367
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETG 83
K L+L+VIGHVD GKSTL+G LL G + + + + E +KKLGK+S +A++LD
Sbjct: 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 63
Query: 84 EESSCEIPVDTT 95
EE + ++ T
Sbjct: 64 EERERGVTINLT 75
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 219 bits (558), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 11/310 (3%)
Query: 226 LEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDAT 285
L+ + +G T++VG++ FET+ + +LLDAPGHK ++ NMI GA+QAD+ +LV+ A
Sbjct: 96 LDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR 155
Query: 286 RGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLK 343
RGEFE GFE GGQTREHA+L R+ G+N L VVINK+D +V WS++R++E V KL FL+
Sbjct: 156 RGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLR 215
Query: 344 Q-AGFRD-SDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPL 401
+ AG+ +D++Y+P S TG+N+ ++ WY GP LL+ +D+ R + P
Sbjct: 216 RVAGYNSKTDVKYMPVSAYTGQNVKDRVD-SSVCPWYQGPSLLEYLDSMTHLERKVNAPF 274
Query: 402 RMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVY--VDEMSVSAAYA 459
M ++ YK G+ + G++E G I V+V P N+ V A+Y DE +S++
Sbjct: 275 IMPIASKYKDLGT--ILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADE-EISSSIC 331
Query: 460 GDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYPVTHDITH 519
GD V + + D +V G++L+ +P +++F A+I + + + +T GY I
Sbjct: 332 GDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHT 390
Query: 520 LTKAAIFSEI 529
+ F+++
Sbjct: 391 AVEEVSFAKL 400
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 45/63 (71%)
Query: 23 GKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDET 82
GK +++V IGHVDAGKSTL G++L+L G V R + K E E+K+ GK+S+ +W LD T
Sbjct: 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDST 99
Query: 83 GEE 85
EE
Sbjct: 100 SEE 102
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 168/314 (53%), Gaps = 10/314 (3%)
Query: 226 LEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDAT 285
L+ + + RGIT+D+ +FET +T++DAPGH+DFI NMITG +QAD A+L++
Sbjct: 60 LDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGG 119
Query: 286 RGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA 345
GEFE G GQTREHALL +LGV QL V +NK+D+V W + RFQEIV + F+K+
Sbjct: 120 VGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKV 179
Query: 346 GFRDSDIEYVPCSGLTGENLT-TPSQVPALTSW--------YSGPCLLDVIDNFKTPSRP 396
G+ + +VP SG G+N+ + P W G LL+ ID + PSRP
Sbjct: 180 GYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRP 239
Query: 397 LTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSA 456
KPLR+ + D+YK G G GRVETGVI G V P T VK+V + +
Sbjct: 240 TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQ 299
Query: 457 AYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPV-SSKFEARIVVFNITTPITIGYPVTH 515
GDNV + N + + G + + + P + F A ++V N I+ GY
Sbjct: 300 GVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVL 359
Query: 516 DITHLTKAAIFSEI 529
D A F E+
Sbjct: 360 DCHTAHIACRFDEL 373
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 46/70 (65%)
Query: 24 KGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETG 83
K +++VVIGHVD+GKST GHL+Y G + R I K E E+ +LGK SF YAW+LD+
Sbjct: 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLK 64
Query: 84 EESSCEIPVD 93
E I +D
Sbjct: 65 AERERGITID 74
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 212 bits (539), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 175/315 (55%), Gaps = 15/315 (4%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RG+TMDV + FE+ K + DAPGH+DFI MI GA+ AD A+LVVD+++ FE GF
Sbjct: 239 RGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFL 298
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL-KQAGFRDSDIE 353
GQTREHA L+R+LG++++ V +NKLD +SWS+DRFQEI + FL K GF+ S++
Sbjct: 299 ENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVH 358
Query: 354 YVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTG 413
+VP S ++G NL L WY GP LL +D P +P KPLR+S+ D+Y+S
Sbjct: 359 FVPISAISGTNLIQKDS-SDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPR 417
Query: 414 SGYCIAGRVETGVILAGEKVM-VQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472
S + GRVE G + + + V Q + + + S + A AGD V++ L + +
Sbjct: 418 S-VTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEV 476
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYPVTHDITHLTKAAIFSEIGKQ 532
+ G +LS +P F A I F+I PI G + + HL +
Sbjct: 477 NQLRPGDILSNYENPVRRVRSFVAEIQTFDIHGPILSGSTL---VLHLGRTV-------- 525
Query: 533 TPVAARFSTVWGERG 547
T V+ + TV +R
Sbjct: 526 TSVSLKIVTVNNKRS 540
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 19 EQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWI 78
EQ+ K +HLVV GHVD+GKST++G +++ +G +++R + K E+ GK SF YAW+
Sbjct: 170 EQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWL 229
Query: 79 LDETGEESSCEIPVDTTS 96
LD T EE + + +D S
Sbjct: 230 LDTTEEERARGVTMDVAS 247
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 160/296 (54%), Gaps = 18/296 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RG+T+ + S F T T++DAPGH+DF+PN I G +QAD+A+L VD + FE+GF+
Sbjct: 229 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD 288
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
GQT+EH LL SLG++ L + +NK+D V WSQ RF+EI +KL +L GF + +I +
Sbjct: 289 LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINW 348
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN--FKTP--SRPLTK--PLRMSVSDI 408
VP SG +GE + + WY+GP L+ ++N FK + + K P SV +I
Sbjct: 349 VPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEI 408
Query: 409 Y---KSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV--------DEMSVSAA 457
K++ ++G++E+G I GE + + P + V + V + A
Sbjct: 409 IPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVA 468
Query: 458 YAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSK-FEARIVVFNITTPITIGYP 512
GD V++ L +++ G L + + + S++ F + F++ P+ G P
Sbjct: 469 IKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTP 524
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 27 LHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEES 86
L VV+GHVDAGKSTLMG LLY + V+ ++ K + ES+ +GK SF +AWI+D+T EE
Sbjct: 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEER 227
Query: 87 SCEIPVDTTSA 97
+ V ++
Sbjct: 228 ERGVTVSICTS 238
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 160/296 (54%), Gaps = 18/296 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RG+T+ + S F T T++DAPGH+DF+PN I G +QAD+A+L VD + FE+GF+
Sbjct: 95 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD 154
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
GQT+EH LL SLG++ L + +NK+D V WSQ RF+EI +KL +L GF + +I +
Sbjct: 155 LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINW 214
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN--FKTP--SRPLTK--PLRMSVSDI 408
VP SG +GE + + WY+GP L+ ++N FK + + K P SV +I
Sbjct: 215 VPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEI 274
Query: 409 Y---KSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV--------DEMSVSAA 457
K++ ++G++E+G I GE + + P + V + V + A
Sbjct: 275 IPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVA 334
Query: 458 YAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSK-FEARIVVFNITTPITIGYP 512
GD V++ L +++ G L + + + S++ F + F++ P+ G P
Sbjct: 335 IKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTP 390
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 27 LHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEES 86
L VV+GHVDAGKSTLMG LLY + V+ ++ K + ES+ +GK SF +AWI+D+T EE
Sbjct: 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEER 93
Query: 87 SCEIPVDTTSA 97
+ V ++
Sbjct: 94 ERGVTVSICTS 104
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 155/296 (52%), Gaps = 18/296 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RG+T+ + S F T T++DAPGH+DF+PN I G +QAD A+L VD + FE+GF+
Sbjct: 95 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFESGFD 154
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
GQT+EH LL SLG++ L + NK D V WSQ RF+EI +KL +L GF + +I +
Sbjct: 155 LDGQTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINW 214
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDN--FKTP--SRPLTK--PLRMSVSDI 408
VP SG +GE + + WY+GP L ++N FK + + K P SV +I
Sbjct: 215 VPISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKENEGINKDDPFLFSVLEI 274
Query: 409 Y---KSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYV--------DEMSVSAA 457
K++ ++G++E+G I GE + + P + V + V + A
Sbjct: 275 IPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVA 334
Query: 458 YAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSK-FEARIVVFNITTPITIGYP 512
GD V++ L +++ G L + + + S++ F + F+ P+ G P
Sbjct: 335 IKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDXNRPLLPGTP 390
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%)
Query: 27 LHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQSFMYAWILDETGEES 86
L VV+GHVDAGKSTL G LLY + V+ ++ K + ES+ GK SF +AWI D+T EE
Sbjct: 34 LSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEER 93
Query: 87 SCEIPVDTTSA 97
+ V ++
Sbjct: 94 ERGVTVSICTS 104
>pdb|1YE9|A Chain A, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|B Chain B, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|C Chain C, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|D Chain D, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|I Chain I, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|J Chain J, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|K Chain K, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|L Chain L, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
Length = 226
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 101/151 (66%), Gaps = 4/151 (2%)
Query: 517 ITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWDLVGNNT 576
++ +TKA S+ K TPV RFSTV G GSADT RD RGFA KFYTE+G +DLVGNNT
Sbjct: 70 LSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNT 129
Query: 577 PIFFVRDPFRFIHFIHSQKRNPVTHL----RDWDAFWDFISLLPETTHQVMILFSDRGIP 632
PIFF++D +F F+H+ K P + D FWD++SL PET H VM SDRGIP
Sbjct: 130 PIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIP 189
Query: 633 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 663
+R M G+G HTF+L+N + + + +FH++
Sbjct: 190 RSYRTMEGFGIHTFRLINAEGKATFVRFHWK 220
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 162 GPHGPVPLEDTYYLDKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVM 221
G GP LED +K+ HF ER PER+VHA+G A GYF+ K + + K +F
Sbjct: 24 GSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN 83
Query: 222 RIVPL 226
+I P+
Sbjct: 84 KITPV 88
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 94 TTSAGNPVDSETIIKTIGPHGPVPLEDTYYLDKLFHFAGERNPERVVHAKGGGAFGYFED 153
TT+ G + + G GP LED +K+ HF ER PER+VHA+G A GYF+
Sbjct: 7 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQP 66
Query: 154 RETI 157
+++
Sbjct: 67 YKSL 70
>pdb|1YE9|E Chain E, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|F Chain F, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|G Chain G, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|H Chain H, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|M Chain M, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|N Chain N, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|O Chain O, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
pdb|1YE9|P Chain P, Crystal Structure Of Proteolytically Truncated Catalase
Hpii From E. Coli
Length = 259
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 125/236 (52%), Gaps = 17/236 (7%)
Query: 678 KLAATDPDYSIRDLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLL 737
KL DPD+ R+L++ I G+FP + Q++ E+ + ++ D TK+ P+ P+
Sbjct: 1 KLTGRDPDFHRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQ 60
Query: 738 PVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGA-NF 796
VG MVL++NP N++AE EQ AF+P +++PG++ T D +LQGRL SY DT I RLG NF
Sbjct: 61 RVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNF 120
Query: 797 NQIPVN---CPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKG--PEPTP----RGAWST 847
++IP+N CPY N+QRD + NY PNS P TP RG + +
Sbjct: 121 HEIPINRPTCPYH----NFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFES 176
Query: 848 YNAT---GDVKRYKTEDEDNFSQPRILWSNVLDDAARDRMTTNIASVLKLAAPFIQ 900
Y V+ + +S PR+ W + R + + K+ P+I+
Sbjct: 177 YQERVEGNKVRERSPSFGEYYSHPRLFWLSQTPFEQRHIVDGFSFELSKVVRPYIR 232
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 170
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L E P W LLD ID + TP R + KP M V D++
Sbjct: 171 IRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV + L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + V
Sbjct: 291 RGVSREEVERGQVLAKPGSITP-HTKFEASVYVLK 324
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 170
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L + P W LLD ID + TP R + KP M V D++
Sbjct: 171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV V L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + V
Sbjct: 291 RGVSREEVERGQVLAKPGSITP-HTKFEASVYVLK 324
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 170
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L + P W LLD ID + TP R + KP M V D++
Sbjct: 171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV V L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + V
Sbjct: 291 RGVSREEVERGQVLAKPGSITP-HTKFEASVYVLK 324
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 170
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L + P W LLD ID + TP R + KP M V D++
Sbjct: 171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV V L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + V
Sbjct: 291 RGVSREEVERGQVLAKPGSITP-HTKFEASVYVLK 324
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 170
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L + P W LLD ID + TP R + KP M V D++
Sbjct: 171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV V L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + V
Sbjct: 291 RGVSREEVERGQVLAKPGSITP-HTKFEASVYVLK 324
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 170
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L + P W LLD ID + TP R + KP M V D++
Sbjct: 171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV V L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + V
Sbjct: 291 RGVSREEVERGQVLAKPGSITP-HTKFEASVYVLK 324
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 170
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L + P W LLD ID + TP R + KP M V D++
Sbjct: 171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV V L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + V
Sbjct: 291 RGVSREEVERGQVLAKPGSITP-HTKFEASVYVLK 324
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 60 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 115
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 116 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 171
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L + P W LLD ID + TP R + KP M V D++
Sbjct: 172 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 231
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV V L
Sbjct: 232 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLL 291
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + V
Sbjct: 292 RGVSREEVERGQVLAKPGSITP-HTKFEASVYVLK 325
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 170
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L E P W LLD ID + TP R + KP M V D++
Sbjct: 171 IRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV + L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + +
Sbjct: 291 RGVSREEVERGQVLAKPGSITP-HTKFEASVYILK 324
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D PGH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V + + ++ L Q F ++
Sbjct: 115 ---QTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPV 170
Query: 355 VPCSGLTG--ENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L E P W LLD ID + TP R + KP M V D++
Sbjct: 171 IRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + P+ T V V + ++ AGDNV + L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ P +KFEA + +
Sbjct: 291 RGVSREEVERGQVLAKPGSITP-HTKFEASVYILK 324
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ET ++ + +D GH D+I NMITGA Q D A+LVV A G
Sbjct: 59 RGITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMR---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK+D V ++ + ++ L Q FR ++
Sbjct: 115 ---QTREHILLARQVGVRYIVVFMNKVDMVD-DRELLDLVEMEVRDLLNQYEFRGDEVRV 170
Query: 355 VPCSGLTG-ENLTTPSQVPALTSWYSGPC--LLDVIDNF-KTPSRPLTKPLRMSVSDIYK 410
+ S L E + + + + LLD ID + +T R + K M V D++
Sbjct: 171 IRGSALLALEEMHKNRKTKRGENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFT 230
Query: 411 STGSGYCIAGRVETGVILAGEKVMV---QPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTL 467
TG G GR+E G + G++V + + T V V + ++ AGDNV + L
Sbjct: 231 ITGRGTVATGRIERGKVKVGDEVEIVGLARETRKTVVTGVEMHRKTLQEGIAGDNVGLLL 290
Query: 468 LNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ V G +L++ +KFEA + +
Sbjct: 291 RGVSREEVERGQVLAKRG-SITRHTKFEASVYILK 324
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 141/286 (49%), Gaps = 18/286 (6%)
Query: 214 IEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGAT 273
++ A LV +G+ + +GIT+DV F T + + D PGH+ + N TGA+
Sbjct: 73 VDLALLV------DGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGAS 126
Query: 274 QADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQE 333
D+A+++VDA G +T QTR H+ + LG+ + V INK D + + F+
Sbjct: 127 TCDLAIILVDARYG-VQT------QTRRHSYIASLLGIKHIVVAINKXDLNGFDERVFES 179
Query: 334 IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTP 393
I F + F+ + +VP S L G+N+ S+ + WY+G L ++++ +
Sbjct: 180 IKADYLKFAEGIAFKPTTXAFVPXSALKGDNVVNKSE---RSPWYAGQSLXEILETVEIA 236
Query: 394 SRPLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMS 453
S LR V + + + AG + +G++ G++++V P + + VK++ E
Sbjct: 237 SDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGE 296
Query: 454 VSAAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIV 499
+ A G +VTL D+ ++S G LL + VS F+A +V
Sbjct: 297 LEQAGPGQ--AVTLTXEDEIDISRGDLLVHADNVPQVSDAFDAXLV 340
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 5 VNKDKLKKIEEYTREQAGGKGRLHLVVIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETE 64
+++D L + ++ R++ L + G+VD GKSTL+G LL+ + + +
Sbjct: 8 ISEDILAYLGQHERKEX-----LRFLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRD 62
Query: 65 SKKLG 69
SKK G
Sbjct: 63 SKKSG 67
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 59 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D
Sbjct: 115 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 170
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGS 414
V S L + L ++ A +G LD P R + KP + + D++ +G
Sbjct: 171 VRGSAL--KALEGDAEWEAKILELAG--FLD--SYIPEPERAIDKPFLLPIEDVFSISGR 224
Query: 415 GYCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472
G + GRVE G+I GE+V + + + +T V + + AG+NV V L +
Sbjct: 225 GTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 284
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
+ + G +L++ P +KFE+ + + +
Sbjct: 285 EEIERGQVLAKPGTIKP-HTKFESEVYILS 313
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 59 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 114
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D
Sbjct: 115 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 170
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGS 414
V S L + L ++ A +G LD P R + KP + + D++ +G
Sbjct: 171 VRGSAL--KALEGDAEWEAKILELAG--FLD--SYIPEPERAIDKPFLLPIEDVFSISGR 224
Query: 415 GYCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472
G + GRVE G+I GE+V + + + +T V + + AG+NV V L +
Sbjct: 225 GTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 284
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
+ + G +L++ P +KFE+ + + +
Sbjct: 285 EEIERGQVLAKPGTIKP-HTKFESEVYILS 313
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 58 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 113
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D
Sbjct: 114 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 169
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGS 414
V S L + L ++ A +G LD P R + KP + + D++ +G
Sbjct: 170 VRGSAL--KALEGDAEWEAKILELAG--FLD--SYIPEPERAIDKPFLLPIEDVFSISGR 223
Query: 415 GYCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472
G + GRVE G+I GE+V + + + +T V + + AG+NV V L +
Sbjct: 224 GTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 283
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
+ + G +L++ P +KFE+ + + +
Sbjct: 284 EEIERGQVLAKPGTIKP-HTKFESEVYILS 312
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 58 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 113
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D
Sbjct: 114 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 169
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGS 414
V S L + L ++ A +G LD P R + KP + + D++ +G
Sbjct: 170 VRGSAL--KALEGDAEWEAKILELAG--FLD--SYIPEPERAIDKPFLLPIEDVFSISGR 223
Query: 415 GYCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472
G + GRVE G+I GE+V + + + +T V + + AG+NV V L +
Sbjct: 224 GTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 283
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
+ + G +L++ P +KFE+ + + +
Sbjct: 284 EEIERGQVLAKPGTIKP-HTKFESEVYILS 312
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 58 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 113
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D
Sbjct: 114 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 169
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGS 414
V S L + L ++ A +G LD P R + KP + + D++ +G
Sbjct: 170 VRGSAL--KALEGDAEWEAKILELAG--FLD--SYIPEPERAIDKPFLLPIEDVFSISGR 223
Query: 415 GYCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472
G + GRVE G+I GE+V + + + +T V + + AG+NV V L +
Sbjct: 224 GTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 283
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
+ + G +L++ P +KFE+ + + +
Sbjct: 284 EEIERGQVLAKPGTIKP-HTKFESEVYILS 312
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 50 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 105
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D
Sbjct: 106 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 161
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGS 414
V S L + L ++ A +G LD P R + KP + + D++ +G
Sbjct: 162 VRGSAL--KALEGDAEWEAKILELAG--FLD--SYIPEPERAIDKPFLLPIEDVFSISGR 215
Query: 415 GYCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472
G + GRVE G+I GE+V + + + +T V + + AG+NV V L +
Sbjct: 216 GTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 275
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
+ + G +L++ P +KFE+ + + +
Sbjct: 276 EEIERGQVLAKPGTIKP-HTKFESEVYILS 304
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 44 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 99
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D
Sbjct: 100 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 155
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGS 414
V S L + L ++ A +G LD P R + KP + + D++ +G
Sbjct: 156 VRGSAL--KALEGDAEWEAKILELAG--FLD--SYIPEPERAIDKPFLLPIEDVFSISGR 209
Query: 415 GYCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQ 472
G + GRVE G+I GE+V + + + +T V + + AG+NV V L +
Sbjct: 210 GTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 269
Query: 473 QNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
+ + G +L++ P +KFE+ + + +
Sbjct: 270 EEIERGQVLAKPGTIKP-HTKFESEVYILS 298
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 17/271 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ T ++ D PGH D++ NMITG D +LVV A G
Sbjct: 50 RGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP---- 105
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D V S+ + + ++ L + G++ +
Sbjct: 106 ---QTREHLLLARQIGVEHVVVYVNKADAVQDSE-MVELVELEIRELLTEFGYKGEETPI 161
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF-KTPSRPLTKPLRMSVSDIYKSTG 413
+ S L P S LLD +D + P+R L KP + V +Y G
Sbjct: 162 IVGSALCALEQRDPE-----LGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPG 216
Query: 414 SGYCIAGRVETGVILAGEKV--MVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYD 471
G + G +E G++ G++ + +N T V + + S+ A AGDN+ +
Sbjct: 217 RGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLK 276
Query: 472 QQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++++ G ++++ P K EA++ +
Sbjct: 277 REDLRRGLVMAKPGSIQP-HQKVEAQVYILT 306
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 19/271 (7%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 343 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 398
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D
Sbjct: 399 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 454
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF-KTPSRPLTKPLRMSVSDIYKSTG 413
V S L + L L +D++ P R + KP + + D++ +G
Sbjct: 455 VRGSALKALEGDAEWEAKILE-------LAGFLDSYIPEPERAIDKPFLLPIEDVFSISG 507
Query: 414 SGYCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYD 471
G + GRVE G+I GE+V + + + +T V + + AG+NV V L
Sbjct: 508 RGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIK 567
Query: 472 QQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ + G +L++ P +KFE+ + + +
Sbjct: 568 REEIERGQVLAKPGTIKP-HTKFESEVYILS 597
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 21/272 (7%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 343 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP---- 398
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D
Sbjct: 399 ---QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPI 454
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPC-LLDVIDNF-KTPSRPLTKPLRMSVSDIYKST 412
V S L + W + L +D++ P R + KP + + D++ +
Sbjct: 455 VRGSAL--------KALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSIS 506
Query: 413 GSGYCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNY 470
G G + GRVE G+I GE+V + + + +T V + + AG+NV V L
Sbjct: 507 GRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGI 566
Query: 471 DQQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++ + G +L++ P +KFE+ + + +
Sbjct: 567 KREEIERGQVLAKPGTIKP-HTKFESEVYILS 597
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 133/269 (49%), Gaps = 17/269 (6%)
Query: 236 GITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFES 295
GIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP----- 55
Query: 296 GGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYV 355
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D V
Sbjct: 56 --QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPIV 112
Query: 356 PCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSG 415
S L + L ++ A +G LD P R + KP + + D++ +G G
Sbjct: 113 RGSAL--KALEGDAEWEAKILELAG--FLD--SYIPEPERAIDKPFLLPIEDVFSISGRG 166
Query: 416 YCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQ 473
+ GRVE G+I GE+V + + + +T V + + AG+NV V L ++
Sbjct: 167 TVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKRE 226
Query: 474 NVSVGFLLSELSHPCPVSSKFEARIVVFN 502
+ G +L++ P +KFE+ + + +
Sbjct: 227 EIERGQVLAKPGTIKP-HTKFESEVYILS 254
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 133/269 (49%), Gaps = 17/269 (6%)
Query: 236 GITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFES 295
GIT++ +++T T++ +D PGH D++ NMITGA Q D A+LVV AT G
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMP----- 55
Query: 296 GGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYV 355
QTREH LL R +GV + V +NK D + ++ + + ++ L Q F D V
Sbjct: 56 --QTREHILLGRQVGVPYIIVFLNKCD-MVDDEELLELVEMEVRELLSQYDFPGDDTPIV 112
Query: 356 PCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTGSG 415
S L + L ++ A +G LD P R + KP + + D++ +G G
Sbjct: 113 RGSAL--KALEGDAEWEAKILELAG--FLD--SYIPEPERAIDKPFLLPIEDVFSISGRG 166
Query: 416 YCIAGRVETGVILAGEKVMVQ--PQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQ 473
+ GRVE G+I GE+V + + + +T V + + AG+NV V L ++
Sbjct: 167 TVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKRE 226
Query: 474 NVSVGFLLSELSHPCPVSSKFEARIVVFN 502
+ G +L++ P +KFE+ + + +
Sbjct: 227 EIERGQVLAKPGTIKP-HTKFESEVYILS 254
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 122/271 (45%), Gaps = 17/271 (6%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT++ ++ T ++ D PGH D++ N ITG D +LVV A G
Sbjct: 61 RGITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXP---- 116
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEY 354
QTREH LL R +GV + V +NK D V S+ + + ++ L + G++ +
Sbjct: 117 ---QTREHLLLARQIGVEHVVVYVNKADAVQDSE-XVELVELEIRELLTEFGYKGEETPI 172
Query: 355 VPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNF-KTPSRPLTKPLRMSVSDIYKSTG 413
+ S L P S LLD +D + P+R L KP + V +Y G
Sbjct: 173 IVGSALCALEQRDPE-----LGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPG 227
Query: 414 SGYCIAGRVETGVILAGEKV--MVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYD 471
G + G +E G++ G++ + +N T V + S+ A AGDN+ +
Sbjct: 228 RGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEXFHKSLDRAEAGDNLGALVRGLK 287
Query: 472 QQNVSVGFLLSELSHPCPVSSKFEARIVVFN 502
++++ G + ++ P K EA++ +
Sbjct: 288 REDLRRGLVXAKPGSIQP-HQKVEAQVYILT 317
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 127/270 (47%), Gaps = 25/270 (9%)
Query: 235 RGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFE 294
RGIT+D+G S F+ + ITL+DAPGH D I +++ A D+AL+VVDA G
Sbjct: 57 RGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG------- 109
Query: 295 SGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA-GFRDSDIE 353
QT EH L++ + + VVI K D + + E++ K + L+ ++S I
Sbjct: 110 PKTQTGEHMLILDHFNIPII-VVITKSDNAGTEEIKRTEMIMK--SILQSTHNLKNSSI- 165
Query: 354 YVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDIYKSTG 413
+P S TG + + +T+ + + + FK P + + G
Sbjct: 166 -IPISAKTGFGVDELKNL-IITTLNNAEIIRNTESYFKMP-----------LDHAFPIKG 212
Query: 414 SGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYAGDNVSVTLLNYDQQ 473
+G + G + G++ G+++ V P N T V+++ + SV A AGD V + + D +
Sbjct: 213 AGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAK 272
Query: 474 NVSVGFLLSELSHPCPVSSKFEARIVVFNI 503
+ G +L+ K A+I + +I
Sbjct: 273 QIYRGXILTSKDTKLQTVDKIVAKIKISDI 302
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 396 PLTKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVS 455
PL P+R+ + D YK G+ + G++E+G I G+++++ P V + D++
Sbjct: 2 PLGSPIRLPIVDKYKDMGT--VVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETD 59
Query: 456 AAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGY 511
G+N+ + L +++ + GF+L + ++ C F+A+IV+ + I GY
Sbjct: 60 TVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGY 115
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 398 TKPLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVY--VDEMSVS 455
+ P M ++ YK G+ + G++E G I V+V P N+ V A+Y DE +S
Sbjct: 5 SAPFIMPIASKYKDLGT--ILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADE-EIS 61
Query: 456 AAYAGDNVSVTLLNYDQQNVSVGFLLSELSHPCPVSSKFEARIVVFNITTPITIGYPVTH 515
++ GD V + + D +V G++L+ +P +++F A+I + + + +T GY
Sbjct: 62 SSICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVM 120
Query: 516 DITHLTKAAIFSEI 529
I + F+++
Sbjct: 121 HIHTAVEEVSFAKL 134
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 34/196 (17%)
Query: 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310
+ I+ +DAPGH+ + M++GA D A+LVV A + QTREH + + +G
Sbjct: 81 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP------QTREHFVALGIIG 134
Query: 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 370
V L +V NK+D VS + Q ++ F K G ++ +P S L N+ +
Sbjct: 135 VKNLIIVQNKVDVVSKEEALSQ--YRQIKQFTK--GTWAENVPIIPVSALHKINIDS--- 187
Query: 371 VPALTSWYSGPCLLDVIDNF-KTPSRPLT-KPLRMSVS--DIYK-----STGSGYCIAGR 421
L++ I+ + KTP R L+ KP+ + + D+ K + G I G
Sbjct: 188 ------------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGS 235
Query: 422 VETGVILAGEKVMVQP 437
+ G+ +++ V P
Sbjct: 236 IIQGLFKVDQEIKVLP 251
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 34/196 (17%)
Query: 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310
+ I+ +DAPGH+ + M++GA D A+LVV A + QTREH + + +G
Sbjct: 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP------QTREHFVALGIIG 128
Query: 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 370
V L +V NK+D VS + Q ++ F K G ++ +P S L N+ +
Sbjct: 129 VKNLIIVQNKVDVVSKEEALSQ--YRQIKQFTK--GTWAENVPIIPVSALHKINIDS--- 181
Query: 371 VPALTSWYSGPCLLDVIDNF-KTPSRPLT-KPLRMSVS--DIYK-----STGSGYCIAGR 421
L++ I+ + KTP R L+ KP+ + + D+ K + G I G
Sbjct: 182 ------------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGS 229
Query: 422 VETGVILAGEKVMVQP 437
+ G+ +++ V P
Sbjct: 230 IIQGLFKVDQEIKVLP 245
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 34/196 (17%)
Query: 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310
+ I+ +DAPGH+ + M++GA D A+LVV A + QTREH + + +G
Sbjct: 87 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP------QTREHFVALGIIG 140
Query: 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 370
V L +V NK+D VS + Q ++ F K G ++ +P S L N+ +
Sbjct: 141 VKNLIIVQNKVDVVSKEEALSQ--YRQIKQFTK--GTWAENVPIIPVSALHKINIDS--- 193
Query: 371 VPALTSWYSGPCLLDVIDNF-KTPSRPLT-KPLRMSVS--DIYK-----STGSGYCIAGR 421
L++ I+ + KTP R L+ KP+ + + D+ K + G I G
Sbjct: 194 ------------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGS 241
Query: 422 VETGVILAGEKVMVQP 437
+ G+ +++ V P
Sbjct: 242 IIQGLFKVDQEIKVLP 257
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 34/196 (17%)
Query: 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310
+ I+ +DAPGH+ + M++GA D A+LVV A + QTREH + + +G
Sbjct: 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP------QTREHFVALGIIG 139
Query: 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 370
V L +V NK+D VS + Q ++ F K G ++ +P S L N+ +
Sbjct: 140 VKNLIIVQNKVDVVSKEEALSQ--YRQIKQFTK--GTWAENVPIIPVSALHKINIDS--- 192
Query: 371 VPALTSWYSGPCLLDVIDNF-KTPSRPLT-KPLRMSVS--DIYK-----STGSGYCIAGR 421
L++ I+ + KTP R L+ KP+ + + D+ K + G I G
Sbjct: 193 ------------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGS 240
Query: 422 VETGVILAGEKVMVQP 437
+ G+ +++ V P
Sbjct: 241 IIQGLFKVDQEIKVLP 256
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 101/240 (42%), Gaps = 57/240 (23%)
Query: 230 ASALNRGITMDVGQSQFETK-----------------------TKYITLLDAPGHKDFIP 266
+ L RGIT+ +G + E + + ++ +DAPGH+ +
Sbjct: 39 SEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMT 98
Query: 267 NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSW 326
M+ GA+ D A+LV+ A QTREH + ++ +G + + NK++ V
Sbjct: 99 TMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQKNIIIAQNKIELV-- 150
Query: 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDV 386
+++ E ++ F++ ++ I +P S L G N+ L+
Sbjct: 151 DKEKALENYRQIKEFIEGTVAENAPI--IPISALHGANIDV---------------LVKA 193
Query: 387 IDNF-KTPSRPLTKPLRMSVS---DIYKSTGS-----GYCIAGRVETGVILAGEKVMVQP 437
I++F TP R KP +M V D+ K G + G + G + G+++ ++P
Sbjct: 194 IEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRP 253
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 34/201 (16%)
Query: 251 KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLG 310
+ ++ +D+PGH+ + M++GA+ D A+LV+ A + QT+EH + + LG
Sbjct: 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQP------QTKEHLMALEILG 134
Query: 311 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 370
++++ +V NK+D V Q +E ++ F+K ++ I +P S N+
Sbjct: 135 IDKIIIVQNKIDLVDEKQ--AEENYEQIKEFVKGTIAENAPI--IPISAHHEANIDV--- 187
Query: 371 VPALTSWYSGPCLLDVIDNF-KTPSRPLTKPLRMSVS---DIYKSTG-----SGYCIAGR 421
LL I +F TP R RM V+ DI K G + G
Sbjct: 188 ------------LLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGA 235
Query: 422 VETGVILAGEKVMVQPQNEVT 442
+ GV G+++ ++P +VT
Sbjct: 236 IIQGVFKVGDEIEIRPGIKVT 256
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 52/229 (22%)
Query: 230 ASALNRGITMDVGQSQFETK-----------------------TKYITLLDAPGHKDFIP 266
+ L RGIT+ +G + E + + ++ +DAPGH+ +
Sbjct: 39 SEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMT 98
Query: 267 NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSW 326
M+ GA+ D A+LV+ A QTREH + ++ +G + + NK++ V
Sbjct: 99 TMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQKNIIIAQNKIELV-- 150
Query: 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDV 386
+++ E ++ F++ ++ I +P S L G N+ L+
Sbjct: 151 DKEKALENYRQIKEFIEGTVAENAPI--IPISALHGANIDV---------------LVKA 193
Query: 387 IDNF-KTPSRPLTKPLRMSVS---DIYKSTGSGYCIAGRVETGVILAGE 431
I++F TP R KP +M V D+ K + G V G I+ G+
Sbjct: 194 IEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGK 242
>pdb|3E4W|A Chain A, Crystal Structure Of A 33kda Catalase-Related Protein From
Mycobacterium Avium Subsp. Paratuberculosis.
P2(1)2(1)2(1) Crystal Form.
pdb|3E4W|B Chain B, Crystal Structure Of A 33kda Catalase-Related Protein From
Mycobacterium Avium Subsp. Paratuberculosis.
P2(1)2(1)2(1) Crystal Form.
pdb|3E4Y|A Chain A, Crystal Structure Of A 33kda Catalase-Related Protein From
Mycobacterium Avium Subsp. Paratuberculosis.
I2(1)2(1)2(1) Crystal Form
Length = 320
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 104/286 (36%), Gaps = 19/286 (6%)
Query: 511 YPVTHDITHLTKAAIFSEIGKQTPVAARFSTVWGERGSADTNRDPRGFALKFYTEDGNWD 570
+ T D L+ A G P RFS G D RG A+KF DG+
Sbjct: 45 FTATRDAVMLSAAPHLD--GSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTT 102
Query: 571 LVGNNTPIFFVRD-PFRFIHFIHSQKRNPVTHLRDWDAFWDFISLLPETTHQVMILFSDR 629
V T V P FI + + + T LR + P + +L
Sbjct: 103 DVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLR----LATHLLTHPRLLGALPLLREAN 158
Query: 630 GIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRTDQGIKNISPQTATKLAATDPDYSIR 689
IP + +G H F+ + D + ++H + +S A+ DPD+
Sbjct: 159 RIPASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLS---ASDARGKDPDFLTD 215
Query: 690 DLYDNIAKGNFPSWTFYIQVMTFEEAKTYRWNPFDVTKIWPQSDFPLLPVGHMVLDKNPG 749
+L + G + F +Q+ ++ D + W + ++ VG + +
Sbjct: 216 ELAARLQDGPV-RFDFRVQIAGPTDST------VDPSSAWQSTQ--IVTVGTVTITGPDT 266
Query: 750 NYYAEIEQLAFNPNNLIPGIEPTPDKMLQGRLHSYIDTHIHRLGAN 795
+ + F+P + GIEP+ D +L+ R Y + R G +
Sbjct: 267 EREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGVD 312
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 57/240 (23%)
Query: 230 ASALNRGITMDVGQSQFETK-----------------------TKYITLLDAPGHKDFIP 266
+ L RGIT+ +G + E + + ++ +D+PGH+ +
Sbjct: 40 SEELRRGITIKIGFADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMT 99
Query: 267 NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSW 326
M+ GA+ D A+LV+ A QTREH + ++ +G + + NK++ V
Sbjct: 100 TMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQKNIIIAQNKIELV-- 151
Query: 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDV 386
+++ E ++ F+K ++ I +P S L G N+ L+
Sbjct: 152 DKEKALENYRQIKEFIKGTVAENAPI--IPISALHGANIDV---------------LVKA 194
Query: 387 IDNF-KTPSRPLTKPLRMSVS---DIYK-----STGSGYCIAGRVETGVILAGEKVMVQP 437
I+ F TP R KP +M V D+ K G + G + G + G+++ ++P
Sbjct: 195 IEEFIPTPKRDSNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRP 254
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 209 AGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNM 268
AG VK A R + +A RGI++ QF + + + LLD PGH+DF +
Sbjct: 61 AGSVKARKAA---RHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDT 117
Query: 269 ITGATQADVALLVVDATRG 287
T D AL+V+DA +G
Sbjct: 118 YRVLTAVDSALVVIDAAKG 136
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGI++ QF K I LLD PGH DF + T D AL V+DA +G
Sbjct: 65 QRGISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKG 118
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGF 293
RGIT+ G + F+ + + ++D PGH DF+ + + D A+L++ A + G
Sbjct: 50 QRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISA-----KDGV 104
Query: 294 ESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR-FQEIVTKLGA 340
++ + HAL R +G+ + INK+D +Q+I KL A
Sbjct: 105 QAQTRILFHAL--RKMGIPTI-FFINKIDQNGIDLSTVYQDIKEKLSA 149
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 27 LHLVVIGHVDAGKSTLMGHLLYLMGRVS 54
+++ V+ HVDAGK+TL LLY G ++
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAIT 30
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 229 IASALNRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
+AS GIT +G ET+ IT LD PGH F GA D+ +LVV A G
Sbjct: 29 VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG 87
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 97/240 (40%), Gaps = 57/240 (23%)
Query: 230 ASALNRGITMDVGQSQFETK-----------------------TKYITLLDAPGHKDFIP 266
+ L RGIT+ +G + E + + ++ +DAPGH+
Sbjct: 39 SEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXT 98
Query: 267 NMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSW 326
+ GA+ D A+LV+ A QTREH ++ +G + + NK++ V
Sbjct: 99 TXLAGASLXDGAILVIAANEPCPRP------QTREHLXALQIIGQKNIIIAQNKIELV-- 150
Query: 327 SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDV 386
+++ E ++ F++ ++ I +P S L G N+ L+
Sbjct: 151 DKEKALENYRQIKEFIEGTVAENAPI--IPISALHGANIDV---------------LVKA 193
Query: 387 IDNF-KTPSRPLTKP---LRMSVSDIYKSTGS-----GYCIAGRVETGVILAGEKVMVQP 437
I++F TP R KP L + D+ K G + G + G + G+++ ++P
Sbjct: 194 IEDFIPTPKRDPNKPPKXLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRP 253
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 236 GITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFES 295
GIT +G Q K IT LD PGH+ F GA D+ +LVV A G E+
Sbjct: 40 GITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEA 99
Query: 296 GGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDR-FQEIV 335
+ + + V INK+D + DR QE++
Sbjct: 100 INHAKAANVPII--------VAINKMDKPEANPDRVMQELM 132
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGI++ QF + LLD PGH+DF + T D L+V+DA +G
Sbjct: 65 QRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGI++ QF + LLD PGH+DF + T D L+V+DA +G
Sbjct: 65 QRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 229 IASALNRGITMDVGQSQFETKT-KYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
+A+ GIT +G + + IT LD PGH F G D+ +LVV A G
Sbjct: 29 VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG 88
Query: 288 EFETGFESGGQTRE-HALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG 346
+ ES ++ H +V + INK D ++ ++ + + G
Sbjct: 89 VMKQTVESIQHAKDAHVPIV---------LAINKCDKAEADPEKVKKELLAYDVVCEDYG 139
Query: 347 FRDSDIEYVPCSGLTGENLTTPSQ 370
D++ V S LTGEN+ ++
Sbjct: 140 ---GDVQAVHVSALTGENMMALAE 160
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 100/262 (38%), Gaps = 38/262 (14%)
Query: 234 NRGITMDVGQSQFETKTK-----YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGE 288
RGIT+ + + K K + L+D PGH DF + + ALL++DA++G
Sbjct: 51 ERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Query: 289 FETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR 348
+ + E L++ VINK+D S DR ++ + ++ +
Sbjct: 111 EAQTVANFWKAVEQDLVIIP--------VINKIDLPSADVDRVKKQIEEVLGLDPEEAIL 162
Query: 349 DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDI 408
S E G+ E + L +++ P KPL+ + D
Sbjct: 163 ASAKE-----GIGIEEI-----------------LEAIVNRIPPPKGDPQKPLKALIFDS 200
Query: 409 YKSTGSGYCIAGRVETGVILAGEKVMVQ---PQNEVTTVKAVYVDEMSVSAAYAGDNVSV 465
Y G R+ G + G+K+M+ + EVT V A AGD +
Sbjct: 201 YYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYI 260
Query: 466 TLLNYDQQNVSVGFLLSELSHP 487
D +++ +G ++ +P
Sbjct: 261 AASIKDVRDIRIGDTITHAKNP 282
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 28 HLVVIGHVDAGKSTLMGHLLYLMGRVSARE 57
+ +I HVD GKSTL LL G +S RE
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISERE 37
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 83/219 (37%), Gaps = 46/219 (21%)
Query: 256 LDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQLG 315
+D PGH+ F G AD+A+L+VD GF+ QT+E AL + +
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVD-----INEGFKP--QTQE-ALNILRMYRTPFV 126
Query: 316 VVINKLDTV-SWS------------------QDRFQEIVTKLGAFLKQAGFRD------- 349
V NK+D + W Q + V +L L + GF
Sbjct: 127 VAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVT 186
Query: 350 ---SDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVS 406
S + +P S +TGE +P L + G + + K P R ++
Sbjct: 187 DFASQVSIIPISAITGEG------IPELLTMLMGLAQQYLREQLKIEE---DSPARGTIL 237
Query: 407 DIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVK 445
++ + TG G I + G++ + + + +V + +
Sbjct: 238 EVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTR 276
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 400 PLRMSVSDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVKAVYVDEMSVSAAYA 459
P R+ + + TG G + G V+ G+ +K + P + ++++ ++ + +A A
Sbjct: 192 PARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPA 251
Query: 460 GDNVSVTLLNYDQQNVSVGFLLS-------ELSHPCPVSSKFEARI 498
G V L N +++ GF++S + + C V SKF +I
Sbjct: 252 GTRVGXRLKNVQAKDIERGFIISDKEIVTTDYTLECTV-SKFTKKI 296
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 46/220 (20%)
Query: 255 LLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVNQL 314
+D PGH+ F G AD+A+L+VD GF+ QT+E ++R
Sbjct: 74 FIDTPGHEAFTTLRKRGGALADLAILIVD-----INEGFKP--QTQEALNILRXYR-TPF 125
Query: 315 GVVINKLDTV-SWS------------------QDRFQEIVTKLGAFLKQAGFRD------ 349
V NK+D + W Q + V +L L + GF
Sbjct: 126 VVAANKIDRIHGWRVHEGRPFXETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRV 185
Query: 350 ----SDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSV 405
S + +P S +TGE +P L + G + + K P R ++
Sbjct: 186 TDFASQVSIIPISAITGEG------IPELLTXLXGLAQQYLREQLKIEE---DSPARGTI 236
Query: 406 SDIYKSTGSGYCIAGRVETGVILAGEKVMVQPQNEVTTVK 445
++ + TG G I + G++ + + +V + +
Sbjct: 237 LEVKEETGLGXTIDAVIYDGILRKDDTIAXXTSKDVISTR 276
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 98/262 (37%), Gaps = 38/262 (14%)
Query: 234 NRGITMDVGQSQFETKTK-----YITLLDAPGHKDFIPNMITGATQADVALLVVDATRGE 288
RGIT+ + K K + L+D PGH DF + + ALL++DA++G
Sbjct: 51 ERGITVKXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Query: 289 FETGFESGGQTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR 348
+ + E L++ VINK+D S DR ++ + ++ +
Sbjct: 111 EAQTVANFWKAVEQDLVIIP--------VINKIDLPSADVDRVKKQIEEVLGLDPEEAIL 162
Query: 349 DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIDNFKTPSRPLTKPLRMSVSDI 408
S E G+ E + L +++ P KPL+ + D
Sbjct: 163 ASAKE-----GIGIEEI-----------------LEAIVNRIPPPKGDPQKPLKALIFDS 200
Query: 409 YKSTGSGYCIAGRVETGVILAGEKVMVQ---PQNEVTTVKAVYVDEMSVSAAYAGDNVSV 465
Y G R+ G + G+K+ + + EVT V A AGD +
Sbjct: 201 YYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEYEVTEVGAQTPKXTKFDKLSAGDVGYI 260
Query: 466 TLLNYDQQNVSVGFLLSELSHP 487
D +++ +G ++ +P
Sbjct: 261 AASIKDVRDIRIGDTITHAKNP 282
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 28 HLVVIGHVDAGKSTLMGHLLYLMGRVSARE 57
+ +I HVD GKSTL LL G +S RE
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISERE 37
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 238 TMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGG 297
T+ G + + + LLDAPG+ DF+ + AD AL+ V A E G + G
Sbjct: 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSA-----EAGVQVG- 114
Query: 298 QTREHALLVRSLGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL 342
T + LG+ ++ VV+ KLD +++ + LG L
Sbjct: 115 -TERAWTVAERLGLPRM-VVVTKLDKGGDYYALLEDLRSTLGPIL 157
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGIT+ + K I ++DAPGH DF + D A++V D+++G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGIT+ + K I ++DAPGH DF + D A++V D+++G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGIT+ + K I ++DAPGH DF + D A++V D+++G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 185 RNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQS 244
RN + H G + + ++ G+ E V+ + LE RGIT+
Sbjct: 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLER-----ERGITIKAQSV 59
Query: 245 QFETK-----TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
+ K T + +D PGH DF + + ALLVVDA +G
Sbjct: 60 TLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG 107
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 31 VIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQ 71
+I H+D GKSTL ++ + G +S RE+ +S L ++
Sbjct: 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERE 49
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 185 RNPERVVHAKGGGAFGYFEVRKLPAGVVKIEFACLVMRIVPLEGIASALNRGITMDVGQS 244
RN + H G + + ++ G+ E V+ + LE RGIT+
Sbjct: 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLER-----ERGITIKAQSV 59
Query: 245 QFETK-----TKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
+ K T + +D PGH DF + + ALLVVDA +G
Sbjct: 60 TLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG 107
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 31 VIGHVDAGKSTLMGHLLYLMGRVSAREIHKHETESKKLGKQ 71
+I H+D GKSTL ++ + G +S RE+ +S L ++
Sbjct: 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERE 49
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 253 ITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312
I L+D+PGH DF + D AL+VVD G + +L ++LG
Sbjct: 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC---------VQTETVLRQALGER 150
Query: 313 -QLGVVINKLD 322
+ VVINK+D
Sbjct: 151 IKPVVVINKVD 161
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 253 ITLLDAPGHKDFIPNMITGATQADVALLVVDATRGEFETGFESGGQTREHALLVRSLGVN 312
I L+D+PGH DF + D AL+VVD G + +L ++LG
Sbjct: 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC---------VQTETVLRQALGER 150
Query: 313 -QLGVVINKLD 322
+ VVINK+D
Sbjct: 151 IKPVVVINKVD 161
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 796 FNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT 851
F ++ N + NY RDA +D A YYP +++G + W YN +
Sbjct: 120 FTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSS----WYNYNQS 171
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 796 FNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT 851
F ++ N + NY RDA +D A YYP +++G + W YN +
Sbjct: 120 FTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSS----WYNYNQS 171
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 796 FNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT 851
F ++ N + NY RDA +D A YYP +++G + W YN +
Sbjct: 120 FTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSS----WYNYNQS 171
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 796 FNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT 851
F ++ N + NY RDA +D A YYP +++G + W YN +
Sbjct: 103 FTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSS----WYNYNQS 154
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 796 FNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT 851
F ++ N + NY RDA +D A YYP +++G + W YN +
Sbjct: 103 FTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSS----WYNYNQS 154
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 796 FNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT 851
F ++ N + NY RDA +D A YYP +++G + W YN +
Sbjct: 103 FTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSS----WYNYNQS 154
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 796 FNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT 851
F ++ N + NY RDA +D A YYP +++G + W YN +
Sbjct: 103 FTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSS----WYNYNQS 154
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 796 FNQIPVNCPYRVRVANYQRDAPMAIDNQNGAPNYYPNSFKGPEPTPRGAWSTYNAT 851
F ++ N + NY RDA +D A YYP +++G + W YN +
Sbjct: 103 FTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSS----WYNYNQS 154
>pdb|1TTO|A Chain A, Crystal Structure Of The Rnase T1 Variant R2
pdb|1TTO|B Chain B, Crystal Structure Of The Rnase T1 Variant R2
pdb|1TTO|C Chain C, Crystal Structure Of The Rnase T1 Variant R2
Length = 104
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 720 WNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGI 769
WN FD + P ++P+L G + +PG +++ FN NN + G+
Sbjct: 45 WNGFDFSVSSPYYEYPILSSGDVYSGGSPG-----ADRVVFNENNQLAGV 89
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGIT+ + K I ++D PGH DF + D A++V D+++G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGIT+ + K I ++D PGH DF + D A++V D+++G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGIT+ + K I ++D PGH DF + D A++V D+++G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 28 HLVVIGHVDAGKSTLMGHLLYLMGRV-SAREIHK 60
++V+ H+DAGK+T +LY GR+ E+H+
Sbjct: 14 NIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHE 47
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGIT+ + K I ++D PGH DF + D A++V D+++G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 234 NRGITMDVGQSQFETKTKYITLLDAPGHKDFIPNMITGATQADVALLVVDATRG 287
RGIT+ + K I ++D PGH DF + D A++V D+++G
Sbjct: 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1Q9E|A Chain A, Rnase T1 Variant With Adenine Specificity
pdb|1Q9E|B Chain B, Rnase T1 Variant With Adenine Specificity
pdb|1Q9E|C Chain C, Rnase T1 Variant With Adenine Specificity
Length = 104
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 720 WNPFDVTKIWPQSDFPLLPVGHMVLDKNPGNYYAEIEQLAFNPNNLIPGI 769
WN FD + P ++P+L G + +PG +++ FN NN + G+
Sbjct: 45 WNGFDFSVSSPYYEWPILSSGDVYSGGSPG-----ADRVVFNENNQLAGV 89
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 31 VIGHVDAGKSTLMGHLLYLMGRV 53
+I H+DAGK+T +LY GR+
Sbjct: 15 IIAHIDAGKTTTTERILYYTGRI 37
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 31 VIGHVDAGKSTLMGHLLYLMGRV 53
+I H+DAGK+T +LY GR+
Sbjct: 15 IIAHIDAGKTTTTERILYYTGRI 37
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|C Chain C, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|E Chain E, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|G Chain G, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 176 DKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIE 215
D +F F ++N + H GG++ YFE LP + +++
Sbjct: 89 DVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVK 128
>pdb|1DPE|A Chain A, Dipeptide-Binding Protein
Length = 507
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 176 DKLFHFSGERNPERVVHAKGGGAFGYFEVRKLPAGVVKIE 215
D +F F ++N + H GG++ YFE LP + +++
Sbjct: 89 DVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVK 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,789,952
Number of Sequences: 62578
Number of extensions: 1384159
Number of successful extensions: 3625
Number of sequences better than 100.0: 165
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3057
Number of HSP's gapped (non-prelim): 362
length of query: 902
length of database: 14,973,337
effective HSP length: 108
effective length of query: 794
effective length of database: 8,214,913
effective search space: 6522640922
effective search space used: 6522640922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)